AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694350 MtrunA17_Chr4g0045091 92.439 410 4 1 1 383 1 410 0.0 766
Msa0694350 MtrunA17_Chr3g0133761 44.938 405 188 7 11 383 5 406 6.97e-110 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694350 AT2G15695.1 51.064 423 155 8 9 383 2 420 5.17e-136 395
Msa0694350 AT5G44250.1 42.611 406 193 10 11 383 5 403 4.11e-101 305
Msa0694350 AT5G44250.2 45.277 307 157 7 81 383 3 302 3.81e-84 258

Find 114 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTGTCTTCAGAATTT+TGG 0.059999 4_4:-63640938 Msa0694350:intron
CTAGATGTTACAAGTGATTT+TGG 0.148183 4_4:-63641205 Msa0694350:CDS
TTGTTTAGGAACTGTGTTTC+TGG 0.150597 4_4:-63641250 Msa0694350:CDS
AGCTGCTGTGAGCCATTTAT+TGG 0.192871 4_4:-63640661 Msa0694350:CDS
AATTCACGTGTTTCGCTTAC+TGG 0.198836 4_4:-63643815 Msa0694350:five_prime_UTR
CCTAAAACTAAAGGCCAATT+TGG 0.216009 4_4:-63644049 Msa0694350:five_prime_UTR
TCCCAACCTTCAACATTCTT+TGG 0.240471 4_4:+63640321 None:intergenic
ATGCGTTTAATTCCTCTAAA+AGG 0.247530 4_4:+63640252 None:intergenic
GTTGACCTTTACTCCTCTTT+AGG 0.255986 4_4:-63643640 Msa0694350:CDS
GATATGAATATGATAGATTT+TGG 0.260174 4_4:-63640128 Msa0694350:three_prime_UTR
ACTTACTGTTAGAAATAAAC+TGG 0.276365 4_4:-63639910 Msa0694350:three_prime_UTR
TCCTTTGTCTCGTAAAATTC+AGG 0.280019 4_4:+63640152 None:intergenic
TCTGGACATATATATGATTC+TGG 0.283472 4_4:-63641232 Msa0694350:CDS
CGCTGTGAGCGCTGATGCTT+GGG 0.291912 4_4:+63640376 None:intergenic
AACAACAATGATAGAGAATC+TGG 0.310572 4_4:-63640447 Msa0694350:CDS
AGTTCCACAAAACCTGTTAC+AGG 0.311517 4_4:-63643668 Msa0694350:CDS
ATATATTTGTGGGAATAAAT+AGG 0.316543 4_4:-63639744 Msa0694350:three_prime_UTR
GACCATCAAAGCTTGTTTCT+TGG 0.325748 4_4:-63641141 Msa0694350:CDS
GTTGAATTTGAAGATTGATA+TGG 0.338521 4_4:-63640032 Msa0694350:three_prime_UTR
GGTCAACGAATTCCTGTAAC+AGG 0.339829 4_4:+63643656 None:intergenic
AATAAGAATGAATAATAAAA+TGG 0.342130 4_4:+63643991 None:intergenic
GGTAATATAATTGTTTGAAA+TGG 0.347177 4_4:-63639857 Msa0694350:three_prime_UTR
ACACGGCCTTCTCCAATAAA+TGG 0.355167 4_4:+63640649 None:intergenic
AGCATGACTGTCAATTGTTT+AGG 0.377794 4_4:-63641264 Msa0694350:CDS
ATCAGCGCTCACAGCGTCCT+TGG 0.388256 4_4:-63640369 Msa0694350:CDS
GAGTTTGACAGAAGTTGATA+TGG 0.397401 4_4:-63639626 Msa0694350:three_prime_UTR
ACCATCAAAGCTTGTTTCTT+GGG 0.398334 4_4:-63641140 Msa0694350:CDS
TCCGAACATAAAATGAGAAA+TGG 0.399424 4_4:+63640911 None:intergenic
GTAGCAAAGTCTGTTGCATC+TGG 0.399698 4_4:-63641118 Msa0694350:CDS
TAGACACTGGATATCCAAAT+TGG 0.403204 4_4:+63644035 None:intergenic
ACCCAAGAAACAAGCTTTGA+TGG 0.403500 4_4:+63641139 None:intergenic
GGCTCACAGCAGCTCTGTAT+TGG 0.405682 4_4:+63640670 None:intergenic
AATCTCAATCAGCTGATCAT+TGG 0.409867 4_4:-63641066 Msa0694350:CDS
GCCGGCCGTTGTATCGTATC+TGG 0.415002 4_4:-63640094 Msa0694350:three_prime_UTR
ACCTTTACTCCTCTTTAGGT+TGG 0.415566 4_4:-63643636 Msa0694350:CDS
CGAGAAAGAACTGGTATTGA+TGG 0.422478 4_4:-63640597 Msa0694350:CDS
GTAAGAAAAGCAGAATATTC+CGG 0.423883 4_4:-63639677 Msa0694350:three_prime_UTR
GAATCGTTGTAATCTTTGCT+TGG 0.425804 4_4:-63643696 Msa0694350:CDS
TGATTGCCGTAGATATAAAC+AGG 0.428325 4_4:-63639981 Msa0694350:three_prime_UTR
AGAAACAAGCTTTGATGGTC+CGG 0.428964 4_4:+63641144 None:intergenic
AATCGTTGTAATCTTTGCTT+GGG 0.431280 4_4:-63643695 Msa0694350:CDS
ACGCTGTGAGCGCTGATGCT+TGG 0.436180 4_4:+63640375 None:intergenic
TCAGCGCTCACAGCGTCCTT+GGG 0.444207 4_4:-63640368 Msa0694350:CDS
TACGAGGCGGTAACATCTAC+TGG 0.455529 4_4:-63643747 Msa0694350:CDS
ATCGCTATGCGTGGAGTTGA+AGG 0.456928 4_4:-63643778 Msa0694350:exon
TGAGGAAAGTGCGGTGCCAT+TGG 0.467523 4_4:-63641917 Msa0694350:CDS
AATTAATTGCAACTTTCTGC+AGG 0.468910 4_4:+63640541 None:intergenic
TGATCACCTGTTTATATCTA+CGG 0.470526 4_4:+63639975 None:intergenic
ATAATTGTTGTCACTCAGAA+AGG 0.471723 4_4:-63639946 Msa0694350:three_prime_UTR
TGGGAAGCTAGGAGCACAAA+CGG 0.476633 4_4:+63640395 None:intergenic
TTGTGTCTGTATATATTTGT+GGG 0.477753 4_4:-63639754 Msa0694350:three_prime_UTR
TTGTTATGTCCTGCTGAACT+AGG 0.479809 4_4:+63640465 None:intergenic
TAACAGTGATGGCTTTGAAT+CGG 0.486402 4_4:+63643894 None:intergenic
TCCAAAGAATGTTGAAGGTT+GGG 0.486461 4_4:-63640322 Msa0694350:CDS
AAGAGAATTCCAACCTAAAG+AGG 0.487518 4_4:+63643627 None:intergenic
AAAGTCTGTTGCATCTGGTT+TGG 0.487705 4_4:-63641113 Msa0694350:CDS
GGTTGCGATGATTCAACTAT+CGG 0.504787 4_4:-63640062 Msa0694350:three_prime_UTR
TGTGTTCCAAAGAATGTTGA+AGG 0.505151 4_4:-63640327 Msa0694350:CDS
TCTTCTTTCTGTTCGTCCCG+TGG 0.505476 4_4:+63640420 None:intergenic
TAATTGTTGTCACTCAGAAA+GGG 0.506377 4_4:-63639945 Msa0694350:three_prime_UTR
TTTAGAGGAATTAAACGCAT+TGG 0.506775 4_4:-63640249 Msa0694350:CDS
ATTCACGTGTTTCGCTTACT+GGG 0.507630 4_4:-63643814 Msa0694350:five_prime_UTR
TCCAACCTAAAGAGGAGTAA+AGG 0.510951 4_4:+63643635 None:intergenic
AATAATAAAATGGTGGGTGA+TGG 0.512020 4_4:+63644001 None:intergenic
ACAGCAGCTCTGTATTGGAT+TGG 0.516355 4_4:+63640675 None:intergenic
ATACTTGAACGAGAAAGAAC+TGG 0.518031 4_4:-63640606 Msa0694350:CDS
GAAACAAGCTTTGATGGTCC+GGG 0.522040 4_4:+63641145 None:intergenic
AAATCACTTGTAACATCTAG+TGG 0.525521 4_4:+63641208 None:intergenic
ATGCACAGCTCCACTCAACT+TGG 0.526381 4_4:-63641381 Msa0694350:intron
TCAATCAGCTGATCATTGGC+AGG 0.527299 4_4:-63641062 Msa0694350:CDS
AAGAATGAATAATAAAATGG+TGG 0.527859 4_4:+63643994 None:intergenic
TCAAACAATTATATTACCTA+GGG 0.531119 4_4:+63639862 None:intergenic
GCGCTGATGCTTGGGAAGCT+AGG 0.531134 4_4:+63640384 None:intergenic
TTTGTGTCTGTATATATTTG+TGG 0.536831 4_4:-63639755 Msa0694350:three_prime_UTR
AACTGGGTGATGTTTGACTA+AGG 0.537810 4_4:-63639893 Msa0694350:three_prime_UTR
CTCTTCATCCAGGTTCAATG+AGG 0.542042 4_4:-63641935 Msa0694350:intron
CCTTCCATTGCAAAAGTGCC+CGG 0.550129 4_4:-63641163 Msa0694350:CDS
ACACGAATCCCTAAAACTAA+AGG 0.551875 4_4:-63644058 Msa0694350:five_prime_UTR
GTTGCGATGATTCAACTATC+GGG 0.555172 4_4:-63640061 Msa0694350:three_prime_UTR
TTCCAAAGAATGTTGAAGGT+TGG 0.557791 4_4:-63640323 Msa0694350:CDS
TGTGAGCCATTTATTGGAGA+AGG 0.562192 4_4:-63640655 Msa0694350:CDS
GCCAGATACGATACAACGGC+CGG 0.565479 4_4:+63640093 None:intergenic
TTCAAACAATTATATTACCT+AGG 0.572767 4_4:+63639861 None:intergenic
AATTGCATTACCAAGTTGAG+TGG 0.572964 4_4:+63641371 None:intergenic
CAATCAGAAAATAACAGTGA+TGG 0.574090 4_4:+63643883 None:intergenic
GGGAAGCTAGGAGCACAAAC+GGG 0.575953 4_4:+63640396 None:intergenic
GAATAAATAGGCCATGTTTG+AGG 0.576240 4_4:-63639732 Msa0694350:three_prime_UTR
AGAATGAATAATAAAATGGT+GGG 0.578892 4_4:+63643995 None:intergenic
ATAGAGAATCTGGGATTCCA+CGG 0.590079 4_4:-63640437 Msa0694350:CDS
TTAAACGCATTGGTCGCTCT+AGG 0.593892 4_4:-63640239 Msa0694350:CDS
ACAGAAGTTGATATGGCGTA+TGG 0.600105 4_4:-63639619 Msa0694350:three_prime_UTR
TTGTCACTCAGAAAGGGGAG+TGG 0.607190 4_4:-63639939 Msa0694350:three_prime_UTR
ATACAAATGCAGCTTAGTGA+AGG 0.607255 4_4:-63641407 Msa0694350:intron
ACGAGGCGGTAACATCTACT+GGG 0.608927 4_4:-63643746 Msa0694350:CDS
AAACACGACACTGATTTCAA+AGG 0.610001 4_4:-63643718 Msa0694350:CDS
ACAACAATGATAGAGAATCT+GGG 0.610595 4_4:-63640446 Msa0694350:CDS
AATTGTTGTCACTCAGAAAG+GGG 0.610604 4_4:-63639944 Msa0694350:three_prime_UTR
GTTGAAGGTTGTGCCGTACG+AGG 0.611614 4_4:-63643763 Msa0694350:CDS
ATAATAAAATGGTGGGTGAT+GGG 0.612121 4_4:+63644002 None:intergenic
TCTCATATCATCGCTATGCG+TGG 0.615765 4_4:-63643787 Msa0694350:exon
TATCGTATCTGGCAGTGCAA+TGG 0.622553 4_4:-63640083 Msa0694350:three_prime_UTR
GTAGATGTTACCGCCTCGTA+CGG 0.628127 4_4:+63643750 None:intergenic
TTTGTGGGAATCGGAATGGG+AGG 0.631152 4_4:-63640287 Msa0694350:CDS
TAGAGAATCTGGGATTCCAC+GGG 0.635772 4_4:-63640436 Msa0694350:CDS
AATCAAACAAAGTAAAACAC+CGG 0.640359 4_4:+63639658 None:intergenic
GACTAAGGTAACTACTCCCT+AGG 0.640949 4_4:-63639878 Msa0694350:three_prime_UTR
CTTACTGTTAGAAATAAACT+GGG 0.641712 4_4:-63639909 Msa0694350:three_prime_UTR
CTGAGAAGCTCATCTCACGT+TGG 0.660450 4_4:-63640803 Msa0694350:intron
GAAGGTTGTGCCGTACGAGG+CGG 0.663173 4_4:-63643760 Msa0694350:CDS
CAGGTTCAATGAGGAAAGTG+CGG 0.674947 4_4:-63641926 Msa0694350:CDS
TGGAAGGGTGTAGAGAAAAG+CGG 0.685152 4_4:+63641179 None:intergenic
GGGTGATGCTGAGTAGACAC+TGG 0.688398 4_4:+63644022 None:intergenic
CACTGCCAGATACGATACAA+CGG 0.709393 4_4:+63640089 None:intergenic
CGAGGCGGTAACATCTACTG+GGG 0.743069 4_4:-63643745 Msa0694350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAATGAATAATAAAA+TGG + chr4_4:63639694-63639713 None:intergenic 10.0%
!!! AATCTTTGTTTAGTAATTTT+TGG - chr4_4:63640269-63640288 Msa0694350:CDS 15.0%
!! TTGTCAATTTACAATTAATT+AGG - chr4_4:63641864-63641883 Msa0694350:intron 15.0%
!! AGAATGAATAATAAAATGGT+GGG + chr4_4:63639690-63639709 None:intergenic 20.0%
!! AAGAATGAATAATAAAATGG+TGG + chr4_4:63639691-63639710 None:intergenic 20.0%
!!! TTGAAGCTTTTTTTTTTCTA+TGG + chr4_4:63639826-63639845 None:intergenic 20.0%
!!! CATTTTTTTTTCAATTTCGT+TGG - chr4_4:63640132-63640151 Msa0694350:three_prime_UTR 20.0%
!! AATAGAATTATTGGATTTAG+AGG - chr4_4:63640161-63640180 Msa0694350:three_prime_UTR 20.0%
!!! AGTATAATCATGTATGATTT+TGG - chr4_4:63640300-63640319 Msa0694350:CDS 20.0%
!!! CGATCAGAATTATTATATTT+TGG - chr4_4:63640359-63640378 Msa0694350:CDS 20.0%
!!! TCAGAATTATTATATTTTGG+AGG - chr4_4:63640362-63640381 Msa0694350:CDS 20.0%
!! ACTTGTGAAATTAAGAATAT+GGG - chr4_4:63640818-63640837 Msa0694350:CDS 20.0%
!!! GATTTCATTTTTATTCCTAT+AGG - chr4_4:63640953-63640972 Msa0694350:intron 20.0%
!!! TAATGATATTTAGAATGACA+AGG - chr4_4:63641102-63641121 Msa0694350:CDS 20.0%
!!! AATATTTTTAGAGTTGGTTA+GGG + chr4_4:63641336-63641355 None:intergenic 20.0%
!!! ATTCTGAATATTTTTAGAGT+TGG + chr4_4:63641342-63641361 None:intergenic 20.0%
!!! ACACGTTATTTTTTTGAATA+AGG - chr4_4:63641643-63641662 Msa0694350:intron 20.0%
!! TTCATACCAAAGATAAAAAT+TGG + chr4_4:63642194-63642213 None:intergenic 20.0%
!! TGAATTAATAAATTCCACAA+TGG + chr4_4:63642385-63642404 None:intergenic 20.0%
!! TAGTTATTATTATCTGATTC+AGG - chr4_4:63642968-63642987 Msa0694350:intron 20.0%
!!! GATATGAATATGATAGATTT+TGG - chr4_4:63643554-63643573 Msa0694350:intron 20.0%
!! TCAAACAATTATATTACCTA+GGG + chr4_4:63643823-63643842 None:intergenic 20.0%
!! TTCAAACAATTATATTACCT+AGG + chr4_4:63643824-63643843 None:intergenic 20.0%
!! GGTAATATAATTGTTTGAAA+TGG - chr4_4:63643825-63643844 Msa0694350:five_prime_UTR 20.0%
!! ATATATTTGTGGGAATAAAT+AGG - chr4_4:63643938-63643957 Msa0694350:five_prime_UTR 20.0%
! AATCCAATAATTCTATTCCA+TGG + chr4_4:63640158-63640177 None:intergenic 25.0%
! AATTTGCGAAGTTAATAGAT+AGG - chr4_4:63640635-63640654 Msa0694350:CDS 25.0%
! AATAAGTTACTCCAAAGATT+GGG - chr4_4:63640728-63640747 Msa0694350:intron 25.0%
! GACTTGTGAAATTAAGAATA+TGG - chr4_4:63640817-63640836 Msa0694350:CDS 25.0%
!! CAAGATTCAATGCTATATTT+TGG + chr4_4:63640889-63640908 None:intergenic 25.0%
!!! ATATTTTTAGAGTTGGTTAG+GGG + chr4_4:63641335-63641354 None:intergenic 25.0%
!!! GAATATTTTTAGAGTTGGTT+AGG + chr4_4:63641337-63641356 None:intergenic 25.0%
! TAACTTACAAGTATACTGAT+AGG + chr4_4:63641535-63641554 None:intergenic 25.0%
! GTATTTGTAAGAACAGATTT+AGG + chr4_4:63641581-63641600 None:intergenic 25.0%
! ATAACCAACTAAGTATCTAT+TGG - chr4_4:63641618-63641637 Msa0694350:intron 25.0%
! TCAAAAACATAAAATGCCAA+TGG + chr4_4:63641784-63641803 None:intergenic 25.0%
!!! TGTTTTTGATGAACTTATTG+AGG - chr4_4:63641795-63641814 Msa0694350:intron 25.0%
!!! CAATAGAAGAAACTTTTTCT+TGG - chr4_4:63641927-63641946 Msa0694350:intron 25.0%
!! ACTTGTTAAGAAATCAAAAG+AGG + chr4_4:63642021-63642040 None:intergenic 25.0%
! TTTAAGTGAAAAGATTGCTT+TGG - chr4_4:63642064-63642083 Msa0694350:intron 25.0%
! TTAAGTGAAAAGATTGCTTT+GGG - chr4_4:63642065-63642084 Msa0694350:intron 25.0%
!! AGTCATCCAATTTTTATCTT+TGG - chr4_4:63642185-63642204 Msa0694350:intron 25.0%
!! ATTGTTGTCTTCAGAATTTT+GGG - chr4_4:63642745-63642764 Msa0694350:intron 25.0%
!! TCCATTTCTCATTTTATGTT+CGG - chr4_4:63642770-63642789 Msa0694350:intron 25.0%
! GTTGAATTTGAAGATTGATA+TGG - chr4_4:63643650-63643669 Msa0694350:CDS 25.0%
! ACTTACTGTTAGAAATAAAC+TGG - chr4_4:63643772-63643791 Msa0694350:CDS 25.0%
! CTTACTGTTAGAAATAAACT+GGG - chr4_4:63643773-63643792 Msa0694350:CDS 25.0%
!! TTTTCTTTTTGACAATTCTG+AGG - chr4_4:63643874-63643893 Msa0694350:five_prime_UTR 25.0%
! TTTGTGTCTGTATATATTTG+TGG - chr4_4:63643927-63643946 Msa0694350:five_prime_UTR 25.0%
! TTGTGTCTGTATATATTTGT+GGG - chr4_4:63643928-63643947 Msa0694350:five_prime_UTR 25.0%
! AATCAAACAAAGTAAAACAC+CGG + chr4_4:63644027-63644046 None:intergenic 25.0%
!!! CAAATTGGCCTTTAGTTTTA+GGG + chr4_4:63639635-63639654 None:intergenic 30.0%
!! ATAATAAAATGGTGGGTGAT+GGG + chr4_4:63639683-63639702 None:intergenic 30.0%
!! AATAATAAAATGGTGGGTGA+TGG + chr4_4:63639684-63639703 None:intergenic 30.0%
CAATCAGAAAATAACAGTGA+TGG + chr4_4:63639802-63639821 None:intergenic 30.0%
AATCGTTGTAATCTTTGCTT+GGG - chr4_4:63639987-63640006 Msa0694350:three_prime_UTR 30.0%
!! TTTAGAGGTTGATAGATTGA+TGG - chr4_4:63640176-63640195 Msa0694350:three_prime_UTR 30.0%
!! TTAGAGGTTGATAGATTGAT+GGG - chr4_4:63640177-63640196 Msa0694350:three_prime_UTR 30.0%
! ATGTTGTGTACTTAGTTCTT+TGG - chr4_4:63640331-63640350 Msa0694350:CDS 30.0%
!! TCCTTCTAGTTAAGTGTTTT+TGG - chr4_4:63640394-63640413 Msa0694350:CDS 30.0%
!! CCTTCTAGTTAAGTGTTTTT+GGG - chr4_4:63640395-63640414 Msa0694350:CDS 30.0%
TATAACCATTCCAAATGGTT+AGG + chr4_4:63640479-63640498 None:intergenic 30.0%
TATAGCAACAAAAACTACCT+TGG - chr4_4:63640495-63640514 Msa0694350:CDS 30.0%
AGACAACTAATGCTAAGAAA+AGG + chr4_4:63640587-63640606 None:intergenic 30.0%
! TTTTCTTAGCATTAGTTGTC+TGG - chr4_4:63640586-63640605 Msa0694350:CDS 30.0%
AGAAAGTAGAAACTATATGC+TGG - chr4_4:63640662-63640681 Msa0694350:CDS 30.0%
CTTATTCTACTCTCAACAAA+TGG + chr4_4:63640714-63640733 None:intergenic 30.0%
GAATAAGTTACTCCAAAGAT+TGG - chr4_4:63640727-63640746 Msa0694350:intron 30.0%
GTGAAATTAAGAATATGGGT+AGG - chr4_4:63640822-63640841 Msa0694350:CDS 30.0%
AATTAAGAATATGGGTAGGT+TGG - chr4_4:63640826-63640845 Msa0694350:CDS 30.0%
TGTTTAGTTGCTTCAATTTC+TGG - chr4_4:63641005-63641024 Msa0694350:intron 30.0%
ATATACTAATATGCTGTTGC+GGG + chr4_4:63641152-63641171 None:intergenic 30.0%
CATATACTAATATGCTGTTG+CGG + chr4_4:63641153-63641172 None:intergenic 30.0%
!!! TCCTTTTTTATTTTCCACCA+CGG + chr4_4:63641246-63641265 None:intergenic 30.0%
TGGTGGAAAATAAAAAAGGA+AGG - chr4_4:63641246-63641265 Msa0694350:CDS 30.0%
GGTGGAAAATAAAAAAGGAA+GGG - chr4_4:63641247-63641266 Msa0694350:CDS 30.0%
CTTGTAAGTTATATGTAGCT+TGG - chr4_4:63641544-63641563 Msa0694350:intron 30.0%
GTAACCAATAGATACTTAGT+TGG + chr4_4:63641625-63641644 None:intergenic 30.0%
AGGTGAGCACAAATTTAATA+CGG + chr4_4:63641675-63641694 None:intergenic 30.0%
! CTGAAATAATTTGTACAGAC+AGG + chr4_4:63642157-63642176 None:intergenic 30.0%
CTGTCTGTACAAATTATTTC+AGG - chr4_4:63642155-63642174 Msa0694350:intron 30.0%
! TTGAAGTTGTGTATGTCTTT+TGG - chr4_4:63642223-63642242 Msa0694350:intron 30.0%
! TGAAGTTGTGTATGTCTTTT+GGG - chr4_4:63642224-63642243 Msa0694350:intron 30.0%
GTATGGAAAGCAATTATAGT+AGG + chr4_4:63642259-63642278 None:intergenic 30.0%
TCTGGACATATATATGATTC+TGG - chr4_4:63642450-63642469 Msa0694350:intron 30.0%
AAATCACTTGTAACATCTAG+TGG + chr4_4:63642477-63642496 None:intergenic 30.0%
! CTAGATGTTACAAGTGATTT+TGG - chr4_4:63642477-63642496 Msa0694350:intron 30.0%
CTGAAGACAACAATGAAATT+AGG + chr4_4:63642739-63642758 None:intergenic 30.0%
! CATTGTTGTCTTCAGAATTT+TGG - chr4_4:63642744-63642763 Msa0694350:intron 30.0%
! TTGTTGTCTTCAGAATTTTG+GGG - chr4_4:63642746-63642765 Msa0694350:intron 30.0%
TCCGAACATAAAATGAGAAA+TGG + chr4_4:63642774-63642793 None:intergenic 30.0%
ACCCATGTTAAATTATGTTC+TGG - chr4_4:63642912-63642931 Msa0694350:intron 30.0%
GCCAGAACATAATTTAACAT+GGG + chr4_4:63642916-63642935 None:intergenic 30.0%
TGCCAGAACATAATTTAACA+TGG + chr4_4:63642917-63642936 None:intergenic 30.0%
AATTAATTGCAACTTTCTGC+AGG + chr4_4:63643144-63643163 None:intergenic 30.0%
AACAACAATGATAGAGAATC+TGG - chr4_4:63643235-63643254 Msa0694350:intron 30.0%
ACAACAATGATAGAGAATCT+GGG - chr4_4:63643236-63643255 Msa0694350:intron 30.0%
! ATGTGAAATTTTGTGGGAAT+CGG - chr4_4:63643386-63643405 Msa0694350:intron 30.0%
ATGCGTTTAATTCCTCTAAA+AGG + chr4_4:63643433-63643452 None:intergenic 30.0%
TTTAGAGGAATTAAACGCAT+TGG - chr4_4:63643433-63643452 Msa0694350:intron 30.0%
TGATCACCTGTTTATATCTA+CGG + chr4_4:63643710-63643729 None:intergenic 30.0%
ATAATTGTTGTCACTCAGAA+AGG - chr4_4:63643736-63643755 Msa0694350:CDS 30.0%
TAATTGTTGTCACTCAGAAA+GGG - chr4_4:63643737-63643756 Msa0694350:CDS 30.0%
AAATGGAAAAAGATGAACTG+AGG - chr4_4:63643842-63643861 Msa0694350:five_prime_UTR 30.0%
!!! CAATTTTTTAGCCTCAAACA+TGG + chr4_4:63643964-63643983 None:intergenic 30.0%
GTAAGAAAAGCAGAATATTC+CGG - chr4_4:63644005-63644024 Msa0694350:five_prime_UTR 30.0%
ACACGAATCCCTAAAACTAA+AGG - chr4_4:63639624-63639643 Msa0694350:three_prime_UTR 35.0%
!!! CCAAATTGGCCTTTAGTTTT+AGG + chr4_4:63639636-63639655 None:intergenic 35.0%
CCTAAAACTAAAGGCCAATT+TGG - chr4_4:63639633-63639652 Msa0694350:three_prime_UTR 35.0%
TAGACACTGGATATCCAAAT+TGG + chr4_4:63639650-63639669 None:intergenic 35.0%
!! TAACAGTGATGGCTTTGAAT+CGG + chr4_4:63639791-63639810 None:intergenic 35.0%
!! AAACACGACACTGATTTCAA+AGG - chr4_4:63639964-63639983 Msa0694350:three_prime_UTR 35.0%
GAATCGTTGTAATCTTTGCT+TGG - chr4_4:63639986-63640005 Msa0694350:three_prime_UTR 35.0%
! AATTCCTGTAACAGGTTTTG+TGG + chr4_4:63640021-63640040 None:intergenic 35.0%
AAGAGAATTCCAACCTAAAG+AGG + chr4_4:63640058-63640077 None:intergenic 35.0%
CTAGAAAAGAGAAACTTACG+CGG + chr4_4:63640103-63640122 None:intergenic 35.0%
!! TTTTTCAATTTCGTTGGCCA+TGG - chr4_4:63640138-63640157 Msa0694350:three_prime_UTR 35.0%
TGGCCATGGAATAGAATTAT+TGG - chr4_4:63640152-63640171 Msa0694350:three_prime_UTR 35.0%
CCCAAAAACACTTAACTAGA+AGG + chr4_4:63640398-63640417 None:intergenic 35.0%
GTTATGTTTGCCTAACCATT+TGG - chr4_4:63640466-63640485 Msa0694350:CDS 35.0%
GTTGCTATAACCATTCCAAA+TGG + chr4_4:63640484-63640503 None:intergenic 35.0%
TCAAACATTTGATCGTATGC+TGG - chr4_4:63640559-63640578 Msa0694350:CDS 35.0%
TTGCGAAGTTAATAGATAGG+TGG - chr4_4:63640638-63640657 Msa0694350:CDS 35.0%
CTAGTCTCTTACATTCCTAT+AGG + chr4_4:63640971-63640990 None:intergenic 35.0%
! ACCGTGGTGGAAAATAAAAA+AGG - chr4_4:63641242-63641261 Msa0694350:CDS 35.0%
!! GGGAATATTTTCTCTGGTTT+AGG + chr4_4:63641315-63641334 None:intergenic 35.0%
AAGTATACTGATAGGACACT+TGG + chr4_4:63641527-63641546 None:intergenic 35.0%
TGAGCACAAATTTAATACGG+TGG + chr4_4:63641672-63641691 None:intergenic 35.0%
! TCACAATTTTCTCTTCATCC+AGG - chr4_4:63641737-63641756 Msa0694350:intron 35.0%
ACCTATGACTATGACACTTA+GGG + chr4_4:63642045-63642064 None:intergenic 35.0%
AACCTATGACTATGACACTT+AGG + chr4_4:63642046-63642065 None:intergenic 35.0%
GAAAAAGAAGCAAACACAAC+AGG + chr4_4:63642120-63642139 None:intergenic 35.0%
! TGTTTGCTTCTTTTTCTGCT+GGG - chr4_4:63642124-63642143 Msa0694350:intron 35.0%
! GAAGTTGTGTATGTCTTTTG+GGG - chr4_4:63642225-63642244 Msa0694350:intron 35.0%
TTCACTAAGCTGCATTTGTA+TGG + chr4_4:63642276-63642295 None:intergenic 35.0%
ATACAAATGCAGCTTAGTGA+AGG - chr4_4:63642275-63642294 Msa0694350:intron 35.0%
! AATTGCATTACCAAGTTGAG+TGG + chr4_4:63642314-63642333 None:intergenic 35.0%
ATCAATCAAAGTAGAAAGCG+AGG + chr4_4:63642343-63642362 None:intergenic 35.0%
GCTTTCTACTTTGATTGATG+TGG - chr4_4:63642344-63642363 Msa0694350:intron 35.0%
AGCATGACTGTCAATTGTTT+AGG - chr4_4:63642418-63642437 Msa0694350:intron 35.0%
TTGTTTAGGAACTGTGTTTC+TGG - chr4_4:63642432-63642451 Msa0694350:intron 35.0%
! ACCATCAAAGCTTGTTTCTT+GGG - chr4_4:63642542-63642561 Msa0694350:intron 35.0%
AATCTCAATCAGCTGATCAT+TGG - chr4_4:63642616-63642635 Msa0694350:intron 35.0%
AGTAATCTATCTTGACCATC+TGG - chr4_4:63642663-63642682 Msa0694350:intron 35.0%
GAATGTTTAGTGGCATGTTT+CGG - chr4_4:63642685-63642704 Msa0694350:intron 35.0%
! TTTTCGTGAATACGTTGACA+CGG + chr4_4:63643053-63643072 None:intergenic 35.0%
ATACTTGAACGAGAAAGAAC+TGG - chr4_4:63643076-63643095 Msa0694350:intron 35.0%
!!! AGTTTTAGAAGAGTTGCAGT+GGG - chr4_4:63643172-63643191 Msa0694350:intron 35.0%
TGTGTTCCAAAGAATGTTGA+AGG - chr4_4:63643355-63643374 Msa0694350:intron 35.0%
TTCCAAAGAATGTTGAAGGT+TGG - chr4_4:63643359-63643378 Msa0694350:intron 35.0%
TCCAAAGAATGTTGAAGGTT+GGG - chr4_4:63643360-63643379 Msa0694350:intron 35.0%
! TGGGATGATGTGAAATTTTG+TGG - chr4_4:63643379-63643398 Msa0694350:intron 35.0%
! GGGATGATGTGAAATTTTGT+GGG - chr4_4:63643380-63643399 Msa0694350:intron 35.0%
! AAATTTTGTGGGAATCGGAA+TGG - chr4_4:63643391-63643410 Msa0694350:intron 35.0%
! AATTTTGTGGGAATCGGAAT+GGG - chr4_4:63643392-63643411 Msa0694350:intron 35.0%
! TCCTGAATTTTACGAGACAA+AGG - chr4_4:63643529-63643548 Msa0694350:intron 35.0%
TCCTTTGTCTCGTAAAATTC+AGG + chr4_4:63643533-63643552 None:intergenic 35.0%
! TGAATTTTACGAGACAAAGG+AGG - chr4_4:63643532-63643551 Msa0694350:intron 35.0%
!! ATAGATTTTGGTGCAACAGT+GGG - chr4_4:63643566-63643585 Msa0694350:intron 35.0%
TGATTGCCGTAGATATAAAC+AGG - chr4_4:63643701-63643720 Msa0694350:CDS 35.0%
AATTGTTGTCACTCAGAAAG+GGG - chr4_4:63643738-63643757 Msa0694350:CDS 35.0%
!!! TTTTTGACAATTCTGAGGTG+AGG - chr4_4:63643879-63643898 Msa0694350:five_prime_UTR 35.0%
GAATAAATAGGCCATGTTTG+AGG - chr4_4:63643950-63643969 Msa0694350:five_prime_UTR 35.0%
!! GAGTTTGACAGAAGTTGATA+TGG - chr4_4:63644056-63644075 Msa0694350:five_prime_UTR 35.0%
AATTCACGTGTTTCGCTTAC+TGG - chr4_4:63639867-63639886 Msa0694350:three_prime_UTR 40.0%
ATTCACGTGTTTCGCTTACT+GGG - chr4_4:63639868-63639887 Msa0694350:three_prime_UTR 40.0%
AGTTCCACAAAACCTGTTAC+AGG - chr4_4:63640014-63640033 Msa0694350:three_prime_UTR 40.0%
GTTGACCTTTACTCCTCTTT+AGG - chr4_4:63640042-63640061 Msa0694350:three_prime_UTR 40.0%
ACCTTTACTCCTCTTTAGGT+TGG - chr4_4:63640046-63640065 Msa0694350:three_prime_UTR 40.0%
TCCAACCTAAAGAGGAGTAA+AGG + chr4_4:63640050-63640069 None:intergenic 40.0%
!! GGTTGATAGATTGATGGGTT+TGG - chr4_4:63640182-63640201 Msa0694350:three_prime_UTR 40.0%
TTTGCCTTAAGCTTGTGAGA+GGG - chr4_4:63640424-63640443 Msa0694350:CDS 40.0%
GTTTGCCTAACCATTTGGAA+TGG - chr4_4:63640471-63640490 Msa0694350:CDS 40.0%
! AACATGCAAAGCATCATCCA+AGG + chr4_4:63640515-63640534 None:intergenic 40.0%
AAGTTACTCCAAAGATTGGG+TGG - chr4_4:63640731-63640750 Msa0694350:intron 40.0%
AGTTACTCCAAAGATTGGGT+GGG - chr4_4:63640732-63640751 Msa0694350:intron 40.0%
TTACTAACCCACCCAATCTT+TGG + chr4_4:63640742-63640761 None:intergenic 40.0%
TGAATCTTGTAAGACAGCCA+TGG - chr4_4:63640900-63640919 Msa0694350:CDS 40.0%
GTTAGAAGTTCTCGAAACTC+TGG + chr4_4:63641278-63641297 None:intergenic 40.0%
! GGTTAGGGGAATATTTTCTC+TGG + chr4_4:63641321-63641340 None:intergenic 40.0%
AGAGGATGAGTTAGTTAGTG+AGG + chr4_4:63641409-63641428 None:intergenic 40.0%
TACACCAAACCAATGAGTCA+AGG + chr4_4:63641695-63641714 None:intergenic 40.0%
!! GGTTTGGTGTACAATACTGA+TGG - chr4_4:63641704-63641723 Msa0694350:intron 40.0%
AAAATGCTAACAAGCACCCT+TGG - chr4_4:63641887-63641906 Msa0694350:intron 40.0%
AAATGCTAACAAGCACCCTT+GGG - chr4_4:63641888-63641907 Msa0694350:CDS 40.0%
! GTGTTTGCTTCTTTTTCTGC+TGG - chr4_4:63642123-63642142 Msa0694350:intron 40.0%
! TGATGTGGTTTTCTACATCG+CGG - chr4_4:63642359-63642378 Msa0694350:intron 40.0%
! AGAAACAAGCTTTGATGGTC+CGG + chr4_4:63642541-63642560 None:intergenic 40.0%
! GACCATCAAAGCTTGTTTCT+TGG - chr4_4:63642541-63642560 Msa0694350:intron 40.0%
! ACCCAAGAAACAAGCTTTGA+TGG + chr4_4:63642546-63642565 None:intergenic 40.0%
AAAGTCTGTTGCATCTGGTT+TGG - chr4_4:63642569-63642588 Msa0694350:intron 40.0%
! TGACCATCTGGAATGTTTAG+TGG - chr4_4:63642675-63642694 Msa0694350:intron 40.0%
ATGCCACTAAACATTCCAGA+TGG + chr4_4:63642681-63642700 None:intergenic 40.0%
TGTGAGCCATTTATTGGAGA+AGG - chr4_4:63643027-63643046 Msa0694350:intron 40.0%
! CGAGAAAGAACTGGTATTGA+TGG - chr4_4:63643085-63643104 Msa0694350:intron 40.0%
!!! GAGTTTTAGAAGAGTTGCAG+TGG - chr4_4:63643171-63643190 Msa0694350:intron 40.0%
CTGAACTAGGCAAAAAGAAG+TGG + chr4_4:63643207-63643226 None:intergenic 40.0%
! TTCTTTTTGCCTAGTTCAGC+AGG - chr4_4:63643208-63643227 Msa0694350:intron 40.0%
TTGTTATGTCCTGCTGAACT+AGG + chr4_4:63643220-63643239 None:intergenic 40.0%
! ATAGAGAATCTGGGATTCCA+CGG - chr4_4:63643245-63643264 Msa0694350:intron 40.0%
CGTCAAAAAGAAATTGCCCA+AGG + chr4_4:63643333-63643352 None:intergenic 40.0%
TCCCAACCTTCAACATTCTT+TGG + chr4_4:63643364-63643383 None:intergenic 40.0%
!! GATAGATTTTGGTGCAACAG+TGG - chr4_4:63643565-63643584 Msa0694350:intron 40.0%
GGTTGCGATGATTCAACTAT+CGG - chr4_4:63643620-63643639 Msa0694350:CDS 40.0%
GTTGCGATGATTCAACTATC+GGG - chr4_4:63643621-63643640 Msa0694350:CDS 40.0%
AACTGGGTGATGTTTGACTA+AGG - chr4_4:63643789-63643808 Msa0694350:exon 40.0%
!! ACAGAAGTTGATATGGCGTA+TGG - chr4_4:63644063-63644082 Msa0694350:five_prime_UTR 40.0%
TCTCATATCATCGCTATGCG+TGG - chr4_4:63639895-63639914 Msa0694350:three_prime_UTR 45.0%
GGTCAACGAATTCCTGTAAC+AGG + chr4_4:63640029-63640048 None:intergenic 45.0%
!! GATGGGTTTGGTGTTACTTG+TGG - chr4_4:63640194-63640213 Msa0694350:three_prime_UTR 45.0%
!! GGTTTGGTGTTACTTGTGGA+TGG - chr4_4:63640198-63640217 Msa0694350:three_prime_UTR 45.0%
CTTTGCCTTAAGCTTGTGAG+AGG - chr4_4:63640423-63640442 Msa0694350:CDS 45.0%
TTGCCTTAAGCTTGTGAGAG+GGG - chr4_4:63640425-63640444 Msa0694350:CDS 45.0%
! AACTATATGCTGGTCTGCTC+TGG - chr4_4:63640672-63640691 Msa0694350:CDS 45.0%
! AGAATATGGGTAGGTTGGAG+AGG - chr4_4:63640831-63640850 Msa0694350:CDS 45.0%
AAGTGTTCCAGCTGAATCCA+TGG + chr4_4:63640920-63640939 None:intergenic 45.0%
!! GGTTTAGGAGCATTTAGCTC+TGG + chr4_4:63641300-63641319 None:intergenic 45.0%
TGTGCACCAATCTCATGTGA+GGG + chr4_4:63641386-63641405 None:intergenic 45.0%
TGCACGAAGGGAAAAAAGGT+GGG + chr4_4:63641441-63641460 None:intergenic 45.0%
TTGCACGAAGGGAAAAAAGG+TGG + chr4_4:63641442-63641461 None:intergenic 45.0%
GGTTTGCACGAAGGGAAAAA+AGG + chr4_4:63641445-63641464 None:intergenic 45.0%
! TTCTGGAAGGTTTGCACGAA+GGG + chr4_4:63641453-63641472 None:intergenic 45.0%
TTGTGCTCACCTTGACTCAT+TGG - chr4_4:63641683-63641702 Msa0694350:intron 45.0%
! CTCACCTTGACTCATTGGTT+TGG - chr4_4:63641688-63641707 Msa0694350:intron 45.0%
CTCTTCATCCAGGTTCAATG+AGG - chr4_4:63641747-63641766 Msa0694350:intron 45.0%
CAGGTTCAATGAGGAAAGTG+CGG - chr4_4:63641756-63641775 Msa0694350:intron 45.0%
AATGCTAACAAGCACCCTTG+GGG - chr4_4:63641889-63641908 Msa0694350:CDS 45.0%
CTTCTAAACAAGTGCCCCAA+GGG + chr4_4:63641906-63641925 None:intergenic 45.0%
ACTTCTAAACAAGTGCCCCA+AGG + chr4_4:63641907-63641926 None:intergenic 45.0%
GCCCTAAGTGTCATAGTCAT+AGG - chr4_4:63642041-63642060 Msa0694350:intron 45.0%
! AAGATTGCTTTGGGTTACGC+AGG - chr4_4:63642074-63642093 Msa0694350:intron 45.0%
GAAGCAAACACAACAGGACA+TGG + chr4_4:63642114-63642133 None:intergenic 45.0%
! TGGAAGGGTGTAGAGAAAAG+CGG + chr4_4:63642506-63642525 None:intergenic 45.0%
! GAAACAAGCTTTGATGGTCC+GGG + chr4_4:63642540-63642559 None:intergenic 45.0%
GTAGCAAAGTCTGTTGCATC+TGG - chr4_4:63642564-63642583 Msa0694350:intron 45.0%
TCAATCAGCTGATCATTGGC+AGG - chr4_4:63642620-63642639 Msa0694350:intron 45.0%
ACAGCAGCTCTGTATTGGAT+TGG + chr4_4:63643010-63643029 None:intergenic 45.0%
AGCTGCTGTGAGCCATTTAT+TGG - chr4_4:63643021-63643040 Msa0694350:intron 45.0%
ACACGGCCTTCTCCAATAAA+TGG + chr4_4:63643036-63643055 None:intergenic 45.0%
GGCAAAAAGAAGTGGTCACT+TGG + chr4_4:63643199-63643218 None:intergenic 45.0%
! TAGAGAATCTGGGATTCCAC+GGG - chr4_4:63643246-63643265 Msa0694350:intron 45.0%
! TCACGTGTGTCACCTTTTAG+AGG - chr4_4:63643418-63643437 Msa0694350:intron 45.0%
! TTAAACGCATTGGTCGCTCT+AGG - chr4_4:63643443-63643462 Msa0694350:intron 45.0%
CACTGCCAGATACGATACAA+CGG + chr4_4:63643596-63643615 None:intergenic 45.0%
TATCGTATCTGGCAGTGCAA+TGG - chr4_4:63643599-63643618 Msa0694350:intron 45.0%
GACTAAGGTAACTACTCCCT+AGG - chr4_4:63643804-63643823 Msa0694350:five_prime_UTR 45.0%
ATCGCTATGCGTGGAGTTGA+AGG - chr4_4:63639904-63639923 Msa0694350:three_prime_UTR 50.0%
GTAGATGTTACCGCCTCGTA+CGG + chr4_4:63639935-63639954 None:intergenic 50.0%
TACGAGGCGGTAACATCTAC+TGG - chr4_4:63639935-63639954 Msa0694350:three_prime_UTR 50.0%
ACGAGGCGGTAACATCTACT+GGG - chr4_4:63639936-63639955 Msa0694350:three_prime_UTR 50.0%
TCTGCTCTGGCAACTTGAAC+AGG - chr4_4:63640685-63640704 Msa0694350:CDS 50.0%
CTGCTCTGGCAACTTGAACA+GGG - chr4_4:63640686-63640705 Msa0694350:CDS 50.0%
TGCTCTGGCAACTTGAACAG+GGG - chr4_4:63640687-63640706 Msa0694350:CDS 50.0%
AAGACAGCCATGGATTCAGC+TGG - chr4_4:63640910-63640929 Msa0694350:CDS 50.0%
GGATTCAGCTGGAACACTTG+TGG - chr4_4:63640921-63640940 Msa0694350:CDS 50.0%
TTCAGCTGGAACACTTGTGG+AGG - chr4_4:63640924-63640943 Msa0694350:CDS 50.0%
TCAGCTGGAACACTTGTGGA+GGG - chr4_4:63640925-63640944 Msa0694350:CDS 50.0%
CAATCTCATGTGAGGGGGTT+GGG + chr4_4:63641379-63641398 None:intergenic 50.0%
TGCACCAATCTCATGTGAGG+GGG + chr4_4:63641384-63641403 None:intergenic 50.0%
GTGCACCAATCTCATGTGAG+GGG + chr4_4:63641385-63641404 None:intergenic 50.0%
GTGTGCACCAATCTCATGTG+AGG + chr4_4:63641387-63641406 None:intergenic 50.0%
AGGGAAAAAAGGTGGGGCAA+GGG + chr4_4:63641434-63641453 None:intergenic 50.0%
AAGGGAAAAAAGGTGGGGCA+AGG + chr4_4:63641435-63641454 None:intergenic 50.0%
GCACGAAGGGAAAAAAGGTG+GGG + chr4_4:63641440-63641459 None:intergenic 50.0%
! CTTCTGGAAGGTTTGCACGA+AGG + chr4_4:63641454-63641473 None:intergenic 50.0%
AAACCTTCCAGAAGCTGGCT+CGG - chr4_4:63641460-63641479 Msa0694350:intron 50.0%
CCATGGTGAGCTAAGCAATG+GGG + chr4_4:63641495-63641514 None:intergenic 50.0%
CCCATGGTGAGCTAAGCAAT+GGG + chr4_4:63641496-63641515 None:intergenic 50.0%
CCCATTGCTTAGCTCACCAT+GGG - chr4_4:63641493-63641512 Msa0694350:intron 50.0%
! CTTAGCTCACCATGGGCTAT+AGG - chr4_4:63641500-63641519 Msa0694350:intron 50.0%
ACACTTGGACCTATAGCCCA+TGG + chr4_4:63641512-63641531 None:intergenic 50.0%
CGCACTTTCCTCATTGAACC+TGG + chr4_4:63641758-63641777 None:intergenic 50.0%
! TTTGGGTTACGCAGGTGCTA+AGG - chr4_4:63642082-63642101 Msa0694350:intron 50.0%
TTACGCAGGTGCTAAGGACT+AGG - chr4_4:63642088-63642107 Msa0694350:intron 50.0%
ATGCACAGCTCCACTCAACT+TGG - chr4_4:63642301-63642320 Msa0694350:intron 50.0%
TTTCTACATCGCGGCCATTG+TGG - chr4_4:63642368-63642387 Msa0694350:intron 50.0%
! CGGGCACTTTTGCAATGGAA+GGG + chr4_4:63642521-63642540 None:intergenic 50.0%
!! CCTTCCATTGCAAAAGTGCC+CGG - chr4_4:63642519-63642538 Msa0694350:intron 50.0%
CTGAGAAGCTCATCTCACGT+TGG - chr4_4:63642879-63642898 Msa0694350:intron 50.0%
TCTTCTTTCTGTTCGTCCCG+TGG + chr4_4:63643265-63643284 None:intergenic 50.0%
! TGGGAAGCTAGGAGCACAAA+CGG + chr4_4:63643290-63643309 None:intergenic 50.0%
TTTGTGGGAATCGGAATGGG+AGG - chr4_4:63643395-63643414 Msa0694350:intron 50.0%
!! ATTTTGGTGCAACAGTGGGC+CGG - chr4_4:63643570-63643589 Msa0694350:intron 50.0%
TTGTCACTCAGAAAGGGGAG+TGG - chr4_4:63643743-63643762 Msa0694350:CDS 50.0%
GGGTGATGCTGAGTAGACAC+TGG + chr4_4:63639663-63639682 None:intergenic 55.0%
GTTGAAGGTTGTGCCGTACG+AGG - chr4_4:63639919-63639938 Msa0694350:three_prime_UTR 55.0%
CGAGGCGGTAACATCTACTG+GGG - chr4_4:63639937-63639956 Msa0694350:three_prime_UTR 55.0%
GCTCCCCTCTCACAAGCTTA+AGG + chr4_4:63640431-63640450 None:intergenic 55.0%
TGAGCTCAAGAGCTCTACCG+TGG - chr4_4:63641226-63641245 Msa0694350:CDS 55.0%
!! AGGGGGTTGGGTAGTGGAAA+GGG + chr4_4:63641367-63641386 None:intergenic 55.0%
CCAATCTCATGTGAGGGGGT+TGG + chr4_4:63641380-63641399 None:intergenic 55.0%
CCAACCCCCTCACATGAGAT+TGG - chr4_4:63641377-63641396 Msa0694350:intron 55.0%
GGAAAAAAGGTGGGGCAAGG+GGG + chr4_4:63641432-63641451 None:intergenic 55.0%
GGGAAAAAAGGTGGGGCAAG+GGG + chr4_4:63641433-63641452 None:intergenic 55.0%
CGTGCAAACCTTCCAGAAGC+TGG - chr4_4:63641455-63641474 Msa0694350:intron 55.0%
! AACCTTCCAGAAGCTGGCTC+GGG - chr4_4:63641461-63641480 Msa0694350:intron 55.0%
CCCCATTGCTTAGCTCACCA+TGG - chr4_4:63641492-63641511 Msa0694350:intron 55.0%
GCCCATGGTGAGCTAAGCAA+TGG + chr4_4:63641497-63641516 None:intergenic 55.0%
!! TGAGGAAAGTGCGGTGCCAT+TGG - chr4_4:63641765-63641784 Msa0694350:intron 55.0%
! CCGGGCACTTTTGCAATGGA+AGG + chr4_4:63642522-63642541 None:intergenic 55.0%
! TGGTCCGGGCACTTTTGCAA+TGG + chr4_4:63642526-63642545 None:intergenic 55.0%
GGCTCACAGCAGCTCTGTAT+TGG + chr4_4:63643015-63643034 None:intergenic 55.0%
! GGGAAGCTAGGAGCACAAAC+GGG + chr4_4:63643289-63643308 None:intergenic 55.0%
GCCAGATACGATACAACGGC+CGG + chr4_4:63643592-63643611 None:intergenic 55.0%
GAAGGTTGTGCCGTACGAGG+CGG - chr4_4:63639922-63639941 Msa0694350:three_prime_UTR 60.0%
GCTCAAGAGCTCTACCGTGG+TGG - chr4_4:63641229-63641248 Msa0694350:CDS 60.0%
!! GGGGGTTGGGTAGTGGAAAG+GGG + chr4_4:63641366-63641385 None:intergenic 60.0%
!! GAGGGGGTTGGGTAGTGGAA+AGG + chr4_4:63641368-63641387 None:intergenic 60.0%
CATGTGAGGGGGTTGGGTAG+TGG + chr4_4:63641373-63641392 None:intergenic 60.0%
! GCGCTGATGCTTGGGAAGCT+AGG + chr4_4:63643301-63643320 None:intergenic 60.0%
!! CGCTGTGAGCGCTGATGCTT+GGG + chr4_4:63643309-63643328 None:intergenic 60.0%
!! ACGCTGTGAGCGCTGATGCT+TGG + chr4_4:63643310-63643329 None:intergenic 60.0%
ATCAGCGCTCACAGCGTCCT+TGG - chr4_4:63643313-63643332 Msa0694350:intron 60.0%
TCAGCGCTCACAGCGTCCTT+GGG - chr4_4:63643314-63643333 Msa0694350:intron 60.0%
GCCGGCCGTTGTATCGTATC+TGG - chr4_4:63643588-63643607 Msa0694350:intron 60.0%
AAAGGTGGGGCAAGGGGGAG+AGG + chr4_4:63641427-63641446 None:intergenic 65.0%
AGCCCGAGCCAGCTTCTGGA+AGG + chr4_4:63641466-63641485 None:intergenic 65.0%
!! TTCCAGAAGCTGGCTCGGGC+TGG - chr4_4:63641465-63641484 Msa0694350:intron 65.0%
AACCAGCCCGAGCCAGCTTC+TGG + chr4_4:63641470-63641489 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63639616 63644088 63639616 ID=Msa0694350;Name=Msa0694350
chr4_4 mRNA 63639616 63644088 63639616 ID=Msa0694350-mRNA-1;Parent=Msa0694350;Name=Msa0694350-mRNA-1;_AED=0.21;_eAED=0.21;_QI=294|0.8|1|1|1|1|6|617|383
chr4_4 exon 63639616 63640714 63639616 ID=Msa0694350-mRNA-1:exon:18029;Parent=Msa0694350-mRNA-1
chr4_4 exon 63640804 63640945 63640804 ID=Msa0694350-mRNA-1:exon:18028;Parent=Msa0694350-mRNA-1
chr4_4 exon 63641045 63641284 63641045 ID=Msa0694350-mRNA-1:exon:18027;Parent=Msa0694350-mRNA-1
chr4_4 exon 63641382 63641417 63641382 ID=Msa0694350-mRNA-1:exon:18026;Parent=Msa0694350-mRNA-1
chr4_4 exon 63641888 63641945 63641888 ID=Msa0694350-mRNA-1:exon:18025;Parent=Msa0694350-mRNA-1
chr4_4 exon 63643601 63644088 63643601 ID=Msa0694350-mRNA-1:exon:18024;Parent=Msa0694350-mRNA-1
chr4_4 five_prime_UTR 63643795 63644088 63643795 ID=Msa0694350-mRNA-1:five_prime_utr;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63643601 63643794 63643601 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63641888 63641945 63641888 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63641382 63641417 63641382 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63641045 63641284 63641045 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63640804 63640945 63640804 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 CDS 63640233 63640714 63640233 ID=Msa0694350-mRNA-1:cds;Parent=Msa0694350-mRNA-1
chr4_4 three_prime_UTR 63639616 63640232 63639616 ID=Msa0694350-mRNA-1:three_prime_utr;Parent=Msa0694350-mRNA-1
Gene Sequence

>Msa0694350

ATGCGTGGAGTTGAAGGTTGTGCCGTACGAGGCGGTAACATCTACTGGGGAAGAAAACACGACACTGATTTCAAAGGAATCGTTGTAATCTTTGCTTGGGTTTCAGTTCCACAAAACCTGTTACAGGAATTCGTTGACCTTTACTCCTCTTTAGGTTGGAATTCTCTTGTTTGTTATGCTCATTATCTATCCGCGTTCAATGAGGAAAGTGCGGTGCCATTGGCATTTTATGTTTTTGATGAACTTATTGAGCTTAGTGAAGGAAGATGCACAGCTCCACTCAACTTGCATGACTGTCAATTGTTTAGGAACTGTGTTTCTGGACATATATATGATTCTGGTCCACTAGATGTTACAAGTGATTTTGGCTTCCGCTTTTCTCTACACCCTTCCATTGCAAAAGTGCCCGGACCATCAAAGCTTGTTTCTTGGGTAGCAAAGTCTGTTGCATCTGGTTTGGATGCTTTATACTTGACTAGATTTGAATCTCAATCAGCTGATCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGGGCTCCATTTCTCATTTTATGTTCGGAGAATGATGAACTTGTGAGATATCAAAGTATCTATGATTTTGCTCAACGATTACGCAATCTCAACGCTGATGTCAATCTTGTAAATCTGAGAAGCTCATCTCACGTTGGTCATTATGAACATCATCCAATCCAATACAGAGCTGCTGTGAGCCATTTATTGGAGAAGGCCGTGTCAACGTATTCACGAAAAGTTATACTTGAACGAGAAAGAACTGGTATTGATGGTACGCACGACGAGATATCTGAGTTAATCTGTGACCTGCAGAAAGTTGCAATTAATTCAAATGAGAGTTTTAGAAGAGTTGCAGTGGGACCAAGTGACCACTTCTTTTTGCCTAGTTCAGCAGGACATAACAACAATGATAGAGAATCTGGGATTCCACGGGACGAACAGAAAGAAGAACCCGTTTGTGCTCCTAGCTTCCCAAGCATCAGCGCTCACAGCGTCCTTGGGCAATTTCTTTTTGACGTTTGTGTTCCAAAGAATGTTGAAGGTTGGGATGATGTGAAATTTTGTGGGAATCGGAATGGGAGGTCACGTGTGTCACCTTTTAGAGGAATTAAACGCATTGGTCGCTCTAGGTTATGA
Protein sequence

>Msa0694350

MRGVEGCAVRGGNIYWGRKHDTDFKGIVVIFAWVSVPQNLLQEFVDLYSSLGWNSLVCYAHYLSAFNEESAVPLAFYVFDELIELSEGRCTAPLNLHDCQLFRNCVSGHIYDSGPLDVTSDFGFRFSLHPSIAKVPGPSKLVSWVAKSVASGLDALYLTRFESQSADHWQALYSSVNFGAPFLILCSENDELVRYQSIYDFAQRLRNLNADVNLVNLRSSSHVGHYEHHPIQYRAAVSHLLEKAVSTYSRKVILERERTGIDGTHDEISELICDLQKVAINSNESFRRVAVGPSDHFFLPSSAGHNNNDRESGIPRDEQKEEPVCAPSFPSISAHSVLGQFLFDVCVPKNVEGWDDVKFCGNRNGRSRVSPFRGIKRIGRSRL*