Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563880 | XP_013446599.1 | 95.914 | 514 | 21 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1005 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563880 | sp|A0A1P8B760|AMI4G_ARATH | 62.857 | 490 | 168 | 6 | 27 | 511 | 30 | 510 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563880 | A0A072TTV4 | 95.914 | 514 | 21 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1005 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111310 | Msa0563880 | 0.816790 | 4.611578e-52 | -8.615850e-47 |
| Msa0563880 | Msa0577470 | 0.917148 | 7.555828e-86 | -8.615850e-47 |
| Msa0563880 | Msa0577800 | 0.924719 | 4.834869e-90 | -8.615850e-47 |
| Msa0563880 | Msa1306810 | 0.919604 | 3.657616e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563880 | MtrunA17_Chr8g0377701 | 95.914 | 514 | 21 | 0 | 1 | 514 | 1 | 514 | 0.0 | 1005 |
| Msa0563880 | MtrunA17_Chr8g0377691 | 91.829 | 514 | 41 | 1 | 1 | 514 | 1 | 513 | 0.0 | 950 |
| Msa0563880 | MtrunA17_Chr8g0377651 | 85.825 | 515 | 68 | 2 | 1 | 514 | 3 | 513 | 0.0 | 899 |
| Msa0563880 | MtrunA17_Chr8g0377641 | 85.019 | 514 | 71 | 2 | 1 | 513 | 1 | 509 | 0.0 | 898 |
| Msa0563880 | MtrunA17_Chr8g0377681 | 83.465 | 508 | 82 | 2 | 6 | 512 | 3 | 509 | 0.0 | 862 |
| Msa0563880 | MtrunA17_Chr4g0037521 | 60.913 | 504 | 182 | 9 | 16 | 509 | 9 | 507 | 0.0 | 580 |
| Msa0563880 | MtrunA17_Chr4g0037491 | 58.224 | 304 | 115 | 7 | 206 | 500 | 1 | 301 | 1.67e-115 | 343 |
| Msa0563880 | MtrunA17_Chr8g0377661 | 88.158 | 76 | 9 | 0 | 439 | 514 | 1 | 76 | 3.55e-39 | 137 |
| Msa0563880 | MtrunA17_Chr4g0037501 | 64.894 | 94 | 31 | 2 | 106 | 197 | 2 | 95 | 1.85e-29 | 111 |
| Msa0563880 | MtrunA17_Chr8g0385461 | 33.600 | 250 | 149 | 7 | 41 | 288 | 162 | 396 | 2.91e-29 | 121 |
| Msa0563880 | MtrunA17_Chr3g0097801 | 33.574 | 277 | 175 | 5 | 45 | 318 | 46 | 316 | 7.15e-28 | 117 |
| Msa0563880 | MtrunA17_Chr2g0279961 | 24.638 | 483 | 317 | 13 | 42 | 501 | 130 | 588 | 1.46e-22 | 101 |
| Msa0563880 | MtrunA17_Chr3g0130801 | 29.237 | 236 | 156 | 6 | 41 | 272 | 200 | 428 | 1.72e-14 | 76.3 |
| Msa0563880 | MtrunA17_Chr1g0191741 | 39.450 | 109 | 60 | 3 | 151 | 258 | 73 | 176 | 8.04e-13 | 70.5 |
| Msa0563880 | MtrunA17_Chr8g0384851 | 26.740 | 273 | 189 | 6 | 21 | 288 | 116 | 382 | 1.28e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563880 | AT4G34880.2 | 62.857 | 490 | 168 | 6 | 27 | 511 | 30 | 510 | 0.0 | 574 |
| Msa0563880 | AT4G34880.1 | 56.237 | 489 | 156 | 7 | 27 | 511 | 30 | 464 | 6.66e-179 | 511 |
| Msa0563880 | AT5G07360.1 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 2.99e-28 | 119 |
| Msa0563880 | AT5G07360.3 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 2.99e-28 | 119 |
| Msa0563880 | AT3G25660.1 | 34.237 | 295 | 177 | 9 | 53 | 341 | 57 | 340 | 1.42e-26 | 113 |
| Msa0563880 | AT5G07360.2 | 33.197 | 244 | 143 | 7 | 41 | 282 | 204 | 429 | 1.28e-24 | 108 |
| Msa0563880 | AT5G64440.1 | 24.554 | 505 | 318 | 14 | 36 | 509 | 125 | 597 | 2.17e-21 | 98.2 |
| Msa0563880 | AT1G08980.1 | 38.655 | 119 | 67 | 3 | 141 | 258 | 64 | 177 | 3.52e-13 | 72.0 |
Find 146 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACATACTCACCAATTT+TGG | 0.161024 | 4_1:+64321327 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-64323021 | Msa0563880:CDS |
| CCCCTTTGAGAACCGGGTTT+TGG | 0.237663 | 4_1:+64323129 | None:intergenic |
| GTGAAGCAACTAACTCTTTC+AGG | 0.258408 | 4_1:+64321394 | None:intergenic |
| GAAAGATGGGGCTATTATAT+TGG | 0.260577 | 4_1:-64322892 | Msa0563880:CDS |
| ATGTTATCTTTAACCAAAAT+AGG | 0.263164 | 4_1:+64323008 | None:intergenic |
| CTGAAATTACTACGTCAAAT+TGG | 0.279005 | 4_1:+64320536 | None:intergenic |
| AGCTACACCTGAACACATTA+AGG | 0.284913 | 4_1:-64321629 | Msa0563880:intron |
| TACCCAACTGTGTCCTGCCT+TGG | 0.287369 | 4_1:+64321980 | None:intergenic |
| TCAGTCATATTCATGGAAAT+TGG | 0.291590 | 4_1:+64320760 | None:intergenic |
| GTTTGGAAATGACACCTTAC+TGG | 0.294526 | 4_1:-64321664 | Msa0563880:CDS |
| CTCCTAGTGCTTGGAGTGCC+AGG | 0.297565 | 4_1:-64322824 | Msa0563880:CDS |
| GGACTTACCTTAATGTGTTC+AGG | 0.300442 | 4_1:+64321622 | None:intergenic |
| GTGTCCTGCCTTGGGCTAAT+TGG | 0.303506 | 4_1:+64321989 | None:intergenic |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+64321744 | None:intergenic |
| CAATTTGACGTAGTAATTTC+AGG | 0.308301 | 4_1:-64320535 | Msa0563880:three_prime_UTR |
| AATATCAGTAGCAGCAAATA+TGG | 0.311054 | 4_1:-64322125 | Msa0563880:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:+64323189 | None:intergenic |
| CAACAAGAAACACCCAAAAT+TGG | 0.320154 | 4_1:-64321340 | Msa0563880:intron |
| AAAACCTGAAGGGCATAAAA+TGG | 0.325616 | 4_1:+64322069 | None:intergenic |
| AAGCAGCAAGTTCTCTTTCA+AGG | 0.348616 | 4_1:-64323043 | Msa0563880:CDS |
| AGTCTAAATTATAACATTGT+TGG | 0.349517 | 4_1:-64320679 | Msa0563880:three_prime_UTR |
| TCCAACACCCCTTTGAGAAC+CGG | 0.350483 | 4_1:+64323122 | None:intergenic |
| AAAGATGGGGCTATTATATT+GGG | 0.355646 | 4_1:-64322891 | Msa0563880:CDS |
| GTGCCATTTGGAATTTGCTT+TGG | 0.364629 | 4_1:-64320899 | Msa0563880:CDS |
| TGAGTGAGTGGTCATATTAC+AGG | 0.365318 | 4_1:-64322857 | Msa0563880:CDS |
| TTTAGCCACGTACTTGCTAT+TGG | 0.366366 | 4_1:-64320965 | Msa0563880:CDS |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 4_1:+64323092 | None:intergenic |
| CAGCTTGCACCATGACATCT+TGG | 0.377208 | 4_1:+64321116 | None:intergenic |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:+64321843 | None:intergenic |
| TGGATTGAAAGGAAAGAGAT+TGG | 0.383085 | 4_1:-64321709 | Msa0563880:CDS |
| AGAAGAATCAGTCATATTCA+TGG | 0.384908 | 4_1:+64320753 | None:intergenic |
| GTAAGACTATACTACGAGTT+TGG | 0.390772 | 4_1:-64321681 | Msa0563880:CDS |
| TATGAAAAGGGTGTGCCATT+TGG | 0.392987 | 4_1:-64320911 | Msa0563880:CDS |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:+64321407 | None:intergenic |
| CAAGGTTTACCCAATGTGTA+TGG | 0.395569 | 4_1:+64322169 | None:intergenic |
| CAGGCGTTGTTAACAAGTTA+AGG | 0.399616 | 4_1:-64322914 | Msa0563880:CDS |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:+64323269 | None:intergenic |
| CCATTTGGAATTTGCTTTGG+AGG | 0.404999 | 4_1:-64320896 | Msa0563880:CDS |
| CTTTCAACTTTGAAGACTCA+TGG | 0.405050 | 4_1:-64323354 | None:intergenic |
| TGGTCATATTACAGGTCTAA+TGG | 0.405157 | 4_1:-64322849 | Msa0563880:CDS |
| TAAAGATAACATTGCAACTA+AGG | 0.406275 | 4_1:-64322997 | Msa0563880:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:-64320953 | Msa0563880:CDS |
| ACCCAACTGTGTCCTGCCTT+GGG | 0.411284 | 4_1:+64321981 | None:intergenic |
| GCTTTCTTTGGAAGGCAAGC+TGG | 0.416703 | 4_1:+64323201 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+64320857 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:-64321729 | Msa0563880:CDS |
| CTACACCTGCTCTACTAGTT+AGG | 0.423846 | 4_1:+64322014 | None:intergenic |
| TTAACAACGCCTGCGTCTCT+TGG | 0.430259 | 4_1:+64322924 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.432727 | 4_1:-64321097 | Msa0563880:CDS |
| ACGTGGCTAAAGGACCAAAA+AGG | 0.434770 | 4_1:+64320977 | None:intergenic |
| GTTAACAAGTTAAGGAAAGA+TGG | 0.438548 | 4_1:-64322906 | Msa0563880:CDS |
| TTATCACCAACATTGTTGAT+TGG | 0.441192 | 4_1:-64320656 | Msa0563880:three_prime_UTR |
| TTGTAGGAGAAACTTGAGTA+TGG | 0.448530 | 4_1:-64321139 | Msa0563880:intron |
| CCAACACCCCTTTGAGAACC+GGG | 0.448929 | 4_1:+64323123 | None:intergenic |
| GACAATGGATTCTACATGTA+TGG | 0.451823 | 4_1:-64320618 | Msa0563880:three_prime_UTR |
| TCCAAAACCCGGTTCTCAAA+GGG | 0.455269 | 4_1:-64323130 | Msa0563880:CDS |
| TTGATTGGTCTGAAAATCTA+CGG | 0.472177 | 4_1:-64320641 | Msa0563880:three_prime_UTR |
| TTAACAAGTTAAGGAAAGAT+GGG | 0.476414 | 4_1:-64322905 | Msa0563880:CDS |
| CTAAAGAAAGATGGATTGAA+AGG | 0.478881 | 4_1:-64321720 | Msa0563880:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.485064 | 4_1:-64320887 | Msa0563880:CDS |
| TATGTTCTTGAGACCATAGC+AGG | 0.488452 | 4_1:-64321813 | Msa0563880:CDS |
| TCCTAGTGCTTGGAGTGCCA+GGG | 0.489006 | 4_1:-64322823 | Msa0563880:CDS |
| GCCCAAGGCAGGACACAGTT+GGG | 0.500606 | 4_1:-64321982 | Msa0563880:intron |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4_1:-64320924 | Msa0563880:CDS |
| TTCAGACCAATCAACAATGT+TGG | 0.504254 | 4_1:+64320650 | None:intergenic |
| AAGGGAGTGTAACTAGAAGA+AGG | 0.505383 | 4_1:+64323288 | None:intergenic |
| CCCGGTTCTCAAAGGGGTGT+TGG | 0.507779 | 4_1:-64323123 | Msa0563880:CDS |
| CAAACTTATAACTTTCGAAA+GGG | 0.508484 | 4_1:+64320797 | None:intergenic |
| TAGAGCTGACCAAGAGAGAT+GGG | 0.509333 | 4_1:-64323069 | Msa0563880:CDS |
| TGTAATATGACCACTCACTC+AGG | 0.511423 | 4_1:+64322859 | None:intergenic |
| GTGCAAGCTGAAAAGACAAA+TGG | 0.511979 | 4_1:-64321103 | Msa0563880:CDS |
| GGATTGAAAGGAAAGAGATT+GGG | 0.512951 | 4_1:-64321708 | Msa0563880:CDS |
| AGCCACGTACTTGCTATTGG+AGG | 0.513545 | 4_1:-64320962 | Msa0563880:CDS |
| GCATCAAAGTTCATCCCAAA+AGG | 0.514495 | 4_1:-64321759 | Msa0563880:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.516133 | 4_1:-64323131 | Msa0563880:CDS |
| TGGAGTGCCAGGGGTGGACA+TGG | 0.517155 | 4_1:-64322813 | Msa0563880:CDS |
| AATAGCAAGTACGTGGCTAA+AGG | 0.517260 | 4_1:+64320967 | None:intergenic |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:+64323193 | None:intergenic |
| CTAATGGAGCTCCTAGTGCT+TGG | 0.519023 | 4_1:-64322833 | Msa0563880:CDS |
| TACCTTTCCATGTCCACCCC+TGG | 0.520730 | 4_1:+64322806 | None:intergenic |
| TATAACTTTCGAAAGGGAGG+TGG | 0.521580 | 4_1:+64320803 | None:intergenic |
| GTGCAGAATCCATACACATT+GGG | 0.521797 | 4_1:-64322178 | Msa0563880:intron |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:-64323035 | Msa0563880:CDS |
| AGTGCTTGGAGTGCCAGGGG+TGG | 0.526595 | 4_1:-64322819 | Msa0563880:CDS |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.531370 | 4_1:+64321800 | None:intergenic |
| TGCCAGGGGTGGACATGGAA+AGG | 0.536044 | 4_1:-64322808 | Msa0563880:intron |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.540531 | 4_1:+64320896 | None:intergenic |
| CTACTAGTTAGGCCAACTGT+TGG | 0.540942 | 4_1:+64322025 | None:intergenic |
| AGCCCAAGGCAGGACACAGT+TGG | 0.542690 | 4_1:-64321983 | Msa0563880:CDS |
| CTAGAAGAAGGATTATAGAG+AGG | 0.543663 | 4_1:+64323300 | None:intergenic |
| CCTAGTGCTTGGAGTGCCAG+GGG | 0.544299 | 4_1:-64322822 | Msa0563880:CDS |
| ATGACAAGATGGTCACAAGA+TGG | 0.546422 | 4_1:-64321046 | Msa0563880:CDS |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:-64321379 | Msa0563880:CDS |
| TCAAACTTATAACTTTCGAA+AGG | 0.548021 | 4_1:+64320796 | None:intergenic |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:+64323270 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-64323243 | Msa0563880:CDS |
| GGTTCTCAAAGGGGTGTTGG+AGG | 0.557265 | 4_1:-64323120 | Msa0563880:CDS |
| AGTTCCAATTAGCCCAAGGC+AGG | 0.559502 | 4_1:-64321993 | Msa0563880:CDS |
| TCACGTTATCTTAACTCACT+AGG | 0.563298 | 4_1:-64320502 | Msa0563880:three_prime_UTR |
| CGTAGTAATTTCAGGTTGAG+CGG | 0.566097 | 4_1:-64320527 | Msa0563880:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:-64323257 | Msa0563880:CDS |
| TTTGCTTTGGAGGTTTGAAA+GGG | 0.567329 | 4_1:-64320886 | Msa0563880:CDS |
| TGATTGGTCTGAAAATCTAC+GGG | 0.570172 | 4_1:-64320640 | Msa0563880:three_prime_UTR |
| CCCCTGGCACTCCAAGCACT+AGG | 0.572355 | 4_1:+64322822 | None:intergenic |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:+64323247 | None:intergenic |
| GATAAGCTAAACACCACTGC+AGG | 0.575011 | 4_1:-64322975 | Msa0563880:CDS |
| GAAAGGAAAGAGATTGGGAG+TGG | 0.578868 | 4_1:-64321703 | Msa0563880:CDS |
| TGACAAGATGGTCACAAGAT+GGG | 0.579154 | 4_1:-64321045 | Msa0563880:CDS |
| GTATGGTGAAGTTGTACTCA+TGG | 0.581463 | 4_1:-64320601 | Msa0563880:three_prime_UTR |
| ATAGAGCTGACCAAGAGAGA+TGG | 0.582777 | 4_1:-64323070 | Msa0563880:CDS |
| GTTGGCCTAACTAGTAGAGC+AGG | 0.585664 | 4_1:-64322019 | Msa0563880:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:-64321057 | Msa0563880:CDS |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4_1:+64320935 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4_1:-64320923 | Msa0563880:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:-64323264 | Msa0563880:CDS |
| TCAGTGGTGCCAAGAGACGC+AGG | 0.598008 | 4_1:-64322933 | Msa0563880:CDS |
| ACTTATAACTTTCGAAAGGG+AGG | 0.598476 | 4_1:+64320800 | None:intergenic |
| TGTGCAGAATCCATACACAT+TGG | 0.601083 | 4_1:-64322179 | Msa0563880:intron |
| ACTACTGAGTTAAAACCTGA+AGG | 0.603248 | 4_1:+64322058 | None:intergenic |
| TACACATTGGGTAAACCTTG+TGG | 0.604950 | 4_1:-64322166 | Msa0563880:CDS |
| GGAAGGCCACCCTGAGTGAG+TGG | 0.605485 | 4_1:-64322869 | Msa0563880:CDS |
| AAGATGGGGCTATTATATTG+GGG | 0.606969 | 4_1:-64322890 | Msa0563880:CDS |
| TCTGAAAATCTACGGGACAA+TGG | 0.607126 | 4_1:-64320633 | Msa0563880:three_prime_UTR |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4_1:-64320935 | Msa0563880:CDS |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:-64321525 | Msa0563880:intron |
| CTACTGAGTTAAAACCTGAA+GGG | 0.616814 | 4_1:+64322059 | None:intergenic |
| GTAATATGACCACTCACTCA+GGG | 0.623022 | 4_1:+64322860 | None:intergenic |
| TGGGGCTATTATATTGGGGA+AGG | 0.626086 | 4_1:-64322886 | Msa0563880:CDS |
| TGAGTATGGCCAAGATGTCA+TGG | 0.627762 | 4_1:-64321125 | Msa0563880:CDS |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:+64322078 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.628996 | 4_1:-64322037 | Msa0563880:CDS |
| CCAAAACCCGGTTCTCAAAG+GGG | 0.630408 | 4_1:-64323129 | Msa0563880:CDS |
| CATATTCATGGAAATTGGAG+AGG | 0.631640 | 4_1:+64320765 | None:intergenic |
| AATATGGTAACTGTGTCACT+TGG | 0.633916 | 4_1:-64322109 | Msa0563880:CDS |
| GATCCACTGCTTGATCCACA+AGG | 0.638729 | 4_1:+64322151 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.639092 | 4_1:-64321997 | Msa0563880:CDS |
| TAACAAGTTAAGGAAAGATG+GGG | 0.642051 | 4_1:-64322904 | Msa0563880:CDS |
| AAACCTTGTGGATCAAGCAG+TGG | 0.643969 | 4_1:-64322154 | Msa0563880:CDS |
| ACAAATCAAAATCCAAAACC+CGG | 0.646481 | 4_1:-64323141 | Msa0563880:CDS |
| TCAAAGTTCATCCCAAAAGG+TGG | 0.647641 | 4_1:-64321756 | Msa0563880:CDS |
| ATATTCATGGAAATTGGAGA+GGG | 0.650938 | 4_1:+64320766 | None:intergenic |
| CAATGCAAAAGAGCCTGCAG+TGG | 0.652443 | 4_1:+64322962 | None:intergenic |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-64322094 | Msa0563880:CDS |
| AACCTCCAATAGCAAGTACG+TGG | 0.718611 | 4_1:+64320960 | None:intergenic |
| ATATGACCACTCACTCAGGG+TGG | 0.758632 | 4_1:+64322863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTTTATTTAAAAGTT+TGG | + | chr4_1:64321186-64321205 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTCAGTTTTATA+AGG | + | chr4_1:64321261-64321280 | None:intergenic | 10.0% |
| !!! | AATATTTTCTTACTTTTTTT+TGG | + | chr4_1:64321525-64321544 | None:intergenic | 10.0% |
| !!! | TACATAATAAATAATAGTTT+TGG | + | chr4_1:64322225-64322244 | None:intergenic | 10.0% |
| !! | AAACAAAATTTAAGAGTTAT+AGG | + | chr4_1:64321097-64321116 | None:intergenic | 15.0% |
| !!! | AAGTAAGAAAATATTTTTGA+AGG | - | chr4_1:64321530-64321549 | Msa0563880:intron | 15.0% |
| !! | ATGTTATCTTTAACCAAAAT+AGG | + | chr4_1:64320818-64320837 | None:intergenic | 20.0% |
| !! | AAATTTAAGAGTTATAGGTT+TGG | + | chr4_1:64321092-64321111 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTAGTTAAGTGA+TGG | - | chr4_1:64321202-64321221 | Msa0563880:intron | 20.0% |
| !! | TCACTAATAGTAATACTTAA+TGG | - | chr4_1:64321285-64321304 | Msa0563880:intron | 20.0% |
| !! | CACTAATAGTAATACTTAAT+GGG | - | chr4_1:64321286-64321305 | Msa0563880:intron | 20.0% |
| !!! | AAATATTATGTGTAGCTTTT+GGG | - | chr4_1:64321468-64321487 | Msa0563880:CDS | 20.0% |
| !!! | TTTTCTTACTTTTTTTTGGT+TGG | + | chr4_1:64321521-64321540 | None:intergenic | 20.0% |
| !!! | TCTTAAACTTAATTTTCTAG+CGG | + | chr4_1:64323099-64323118 | None:intergenic | 20.0% |
| !! | AGTCTAAATTATAACATTGT+TGG | - | chr4_1:64323144-64323163 | Msa0563880:CDS | 20.0% |
| !!! | TTTGGATTTTGATTTGTTTG+AGG | + | chr4_1:64320679-64320698 | None:intergenic | 25.0% |
| ! | TAAAGATAACATTGCAACTA+AGG | - | chr4_1:64320826-64320845 | Msa0563880:CDS | 25.0% |
| ! | TTAACAAGTTAAGGAAAGAT+GGG | - | chr4_1:64320918-64320937 | Msa0563880:CDS | 25.0% |
| ! | ATATTAGATTCTTAACAGCT+AGG | + | chr4_1:64321145-64321164 | None:intergenic | 25.0% |
| ! | CATAATATTTCCATAAGCTT+CGG | + | chr4_1:64321458-64321477 | None:intergenic | 25.0% |
| !! | GAAATATTATGTGTAGCTTT+TGG | - | chr4_1:64321467-64321486 | Msa0563880:CDS | 25.0% |
| !! | AATATTATGTGTAGCTTTTG+GGG | - | chr4_1:64321469-64321488 | Msa0563880:CDS | 25.0% |
| !!! | AAATATTTTTGAAGGCCTAA+AGG | - | chr4_1:64321538-64321557 | Msa0563880:intron | 25.0% |
| ! | ATTCATACTAAAGTTCCTAT+GGG | + | chr4_1:64321583-64321602 | None:intergenic | 25.0% |
| !! | AATGATGATTCTAGAAAATG+AGG | - | chr4_1:64321600-64321619 | Msa0563880:intron | 25.0% |
| ! | TTCACATAAAGAAAACGTAT+AGG | + | chr4_1:64321871-64321890 | None:intergenic | 25.0% |
| !!! | CTTAAAAGTTTTATCCAGTA+AGG | + | chr4_1:64322176-64322195 | None:intergenic | 25.0% |
| !! | TATACATACTCACCAATTTT+GGG | + | chr4_1:64322498-64322517 | None:intergenic | 25.0% |
| !! | TTATACATACTCACCAATTT+TGG | + | chr4_1:64322499-64322518 | None:intergenic | 25.0% |
| !! | GAAATGCTTTTGTAACAAAT+TGG | + | chr4_1:64322616-64322635 | None:intergenic | 25.0% |
| ! | AACTGTTGTATAAACATTGT+AGG | - | chr4_1:64322668-64322687 | Msa0563880:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | - | chr4_1:64322766-64322785 | Msa0563880:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:64322969-64322988 | None:intergenic | 25.0% |
| ! | CAAACTTATAACTTTCGAAA+GGG | + | chr4_1:64323029-64323048 | None:intergenic | 25.0% |
| ! | TCAAACTTATAACTTTCGAA+AGG | + | chr4_1:64323030-64323049 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | + | chr4_1:64320556-64320575 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:64320637-64320656 | None:intergenic | 30.0% | |
| ACAAATCAAAATCCAAAACC+CGG | - | chr4_1:64320682-64320701 | Msa0563880:three_prime_UTR | 30.0% | |
| GTTAACAAGTTAAGGAAAGA+TGG | - | chr4_1:64320917-64320936 | Msa0563880:CDS | 30.0% | |
| TAACAAGTTAAGGAAAGATG+GGG | - | chr4_1:64320919-64320938 | Msa0563880:CDS | 30.0% | |
| AAAGATGGGGCTATTATATT+GGG | - | chr4_1:64320932-64320951 | Msa0563880:CDS | 30.0% | |
| ! | CTTCTTACTTTATTTGACCA+TGG | - | chr4_1:64321052-64321071 | Msa0563880:CDS | 30.0% |
| ! | TTAGTTAAGTGATGGAGTAT+AGG | - | chr4_1:64321210-64321229 | Msa0563880:intron | 30.0% |
| !!! | TCTTACTTTTTTTTGGTTGG+AGG | + | chr4_1:64321518-64321537 | None:intergenic | 30.0% |
| CATAATGAAACCATTCCTTT+AGG | + | chr4_1:64321556-64321575 | None:intergenic | 30.0% | |
| CATTCATACTAAAGTTCCTA+TGG | + | chr4_1:64321584-64321603 | None:intergenic | 30.0% | |
| AATATCAGTAGCAGCAAATA+TGG | - | chr4_1:64321698-64321717 | Msa0563880:CDS | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | - | chr4_1:64322094-64322113 | Msa0563880:CDS | 30.0% |
| !! | CTAAAGAAAGATGGATTGAA+AGG | - | chr4_1:64322103-64322122 | Msa0563880:CDS | 30.0% |
| TGTGTACTTTCTTCAAAATC+AGG | - | chr4_1:64322290-64322309 | Msa0563880:intron | 30.0% | |
| ATATTCATGGAAATTGGAGA+GGG | + | chr4_1:64323060-64323079 | None:intergenic | 30.0% | |
| TCAGTCATATTCATGGAAAT+TGG | + | chr4_1:64323066-64323085 | None:intergenic | 30.0% | |
| AGAAGAATCAGTCATATTCA+TGG | + | chr4_1:64323073-64323092 | None:intergenic | 30.0% | |
| TTATCACCAACATTGTTGAT+TGG | - | chr4_1:64323167-64323186 | Msa0563880:CDS | 30.0% | |
| !! | TTGATTGGTCTGAAAATCTA+CGG | - | chr4_1:64323182-64323201 | Msa0563880:CDS | 30.0% |
| CTGAAATTACTACGTCAAAT+TGG | + | chr4_1:64323290-64323309 | None:intergenic | 30.0% | |
| CAATTTGACGTAGTAATTTC+AGG | - | chr4_1:64323288-64323307 | Msa0563880:CDS | 30.0% | |
| CTAGAAGAAGGATTATAGAG+AGG | + | chr4_1:64320526-64320545 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTGATAGCATAGA+AGG | + | chr4_1:64320557-64320576 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | - | chr4_1:64320559-64320578 | Msa0563880:three_prime_UTR | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | + | chr4_1:64320633-64320652 | None:intergenic | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:64320802-64320821 | Msa0563880:CDS | 35.0% |
| GAAAGATGGGGCTATTATAT+TGG | - | chr4_1:64320931-64320950 | Msa0563880:CDS | 35.0% | |
| AAGATGGGGCTATTATATTG+GGG | - | chr4_1:64320933-64320952 | Msa0563880:CDS | 35.0% | |
| TGGTCATATTACAGGTCTAA+TGG | - | chr4_1:64320974-64320993 | Msa0563880:CDS | 35.0% | |
| TGGATTACAAAGTAAGACCA+TGG | + | chr4_1:64321072-64321091 | None:intergenic | 35.0% | |
| ! | TTAAGTGATGGAGTATAGGT+TGG | - | chr4_1:64321214-64321233 | Msa0563880:intron | 35.0% |
| !! | GGACTTTTTGATAGTTTACG+AGG | - | chr4_1:64321235-64321254 | Msa0563880:intron | 35.0% |
| ACCTAAAACAAACACTTGTG+CGG | - | chr4_1:64321404-64321423 | Msa0563880:CDS | 35.0% | |
| TAGTCTCATTATCAGTCCAA+TGG | - | chr4_1:64321431-64321450 | Msa0563880:CDS | 35.0% | |
| !! | TTTTTGAAGGCCTAAAGGAA+TGG | - | chr4_1:64321543-64321562 | Msa0563880:intron | 35.0% |
| ATACTAAAGTTCCTATGGGA+AGG | + | chr4_1:64321579-64321598 | None:intergenic | 35.0% | |
| ! | AATATGGTAACTGTGTCACT+TGG | - | chr4_1:64321714-64321733 | Msa0563880:CDS | 35.0% |
| ! | AAAACCTGAAGGGCATAAAA+TGG | + | chr4_1:64321757-64321776 | None:intergenic | 35.0% |
| CTACTGAGTTAAAACCTGAA+GGG | + | chr4_1:64321767-64321786 | None:intergenic | 35.0% | |
| ACTACTGAGTTAAAACCTGA+AGG | + | chr4_1:64321768-64321787 | None:intergenic | 35.0% | |
| !!! | TTCAGGTTTTAACTCAGTAG+TGG | - | chr4_1:64321767-64321786 | Msa0563880:CDS | 35.0% |
| !!! | TCAGGTTTTAACTCAGTAGT+GGG | - | chr4_1:64321768-64321787 | Msa0563880:CDS | 35.0% |
| ! | ATGTGTAAACATTGATTGCG+TGG | - | chr4_1:64321946-64321965 | Msa0563880:intron | 35.0% |
| !!! | TTGATTGCGTGGTTTTGTAT+AGG | - | chr4_1:64321957-64321976 | Msa0563880:intron | 35.0% |
| ! | TTTTGTATAGGCCAATTTGC+AGG | - | chr4_1:64321969-64321988 | Msa0563880:intron | 35.0% |
| TGGATTGAAAGGAAAGAGAT+TGG | - | chr4_1:64322114-64322133 | Msa0563880:CDS | 35.0% | |
| GGATTGAAAGGAAAGAGATT+GGG | - | chr4_1:64322115-64322134 | Msa0563880:CDS | 35.0% | |
| GTAAGACTATACTACGAGTT+TGG | - | chr4_1:64322142-64322161 | Msa0563880:CDS | 35.0% | |
| ! | CTCTTTCAGGTACTTATTCA+AGG | + | chr4_1:64322419-64322438 | None:intergenic | 35.0% |
| !! | TTTTGGGTGTTTCTTGTTGA+AGG | + | chr4_1:64322482-64322501 | None:intergenic | 35.0% |
| CAACAAGAAACACCCAAAAT+TGG | - | chr4_1:64322483-64322502 | Msa0563880:intron | 35.0% | |
| ! | GCTTTTGTAACAAATTGGCA+TGG | + | chr4_1:64322611-64322630 | None:intergenic | 35.0% |
| TTGTAGGAGAAACTTGAGTA+TGG | - | chr4_1:64322684-64322703 | Msa0563880:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:64322726-64322745 | Msa0563880:intron | 35.0% | |
| ! | ATGCTGTAGTAACACCTTTT+TGG | - | chr4_1:64322832-64322851 | Msa0563880:CDS | 35.0% |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | - | chr4_1:64322936-64322955 | Msa0563880:CDS | 35.0% |
| !! | TTTGCTTTGGAGGTTTGAAA+GGG | - | chr4_1:64322937-64322956 | Msa0563880:CDS | 35.0% |
| ACTTATAACTTTCGAAAGGG+AGG | + | chr4_1:64323026-64323045 | None:intergenic | 35.0% | |
| CATATTCATGGAAATTGGAG+AGG | + | chr4_1:64323061-64323080 | None:intergenic | 35.0% | |
| TTCAGACCAATCAACAATGT+TGG | + | chr4_1:64323176-64323195 | None:intergenic | 35.0% | |
| !! | TGATTGGTCTGAAAATCTAC+GGG | - | chr4_1:64323183-64323202 | Msa0563880:CDS | 35.0% |
| ! | GACAATGGATTCTACATGTA+TGG | - | chr4_1:64323205-64323224 | Msa0563880:CDS | 35.0% |
| TCACGTTATCTTAACTCACT+AGG | - | chr4_1:64323321-64323340 | Msa0563880:CDS | 35.0% | |
| ! | AAGGGAGTGTAACTAGAAGA+AGG | + | chr4_1:64320538-64320557 | None:intergenic | 40.0% |
| AAGCAGCAAGTTCTCTTTCA+AGG | - | chr4_1:64320780-64320799 | Msa0563880:three_prime_UTR | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:64320788-64320807 | Msa0563880:exon | 40.0% | |
| ! | CAGGCGTTGTTAACAAGTTA+AGG | - | chr4_1:64320909-64320928 | Msa0563880:CDS | 40.0% |
| GTAATATGACCACTCACTCA+GGG | + | chr4_1:64320966-64320985 | None:intergenic | 40.0% | |
| TGTAATATGACCACTCACTC+AGG | + | chr4_1:64320967-64320986 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCATATTAC+AGG | - | chr4_1:64320966-64320985 | Msa0563880:CDS | 40.0% | |
| ATCCCCACAAAACACATTCA+TGG | - | chr4_1:64321362-64321381 | Msa0563880:CDS | 40.0% | |
| ! | TCGCCATGAATGTGTTTTGT+GGG | + | chr4_1:64321368-64321387 | None:intergenic | 40.0% |
| ! | TTCGCCATGAATGTGTTTTG+TGG | + | chr4_1:64321369-64321388 | None:intergenic | 40.0% |
| !! | TCCGCACAAGTGTTTGTTTT+AGG | + | chr4_1:64321408-64321427 | None:intergenic | 40.0% |
| TGCCAAAGGTCCTAATTACA+TGG | - | chr4_1:64321492-64321511 | Msa0563880:CDS | 40.0% | |
| GTTTCATTATGCCTTCCCAT+AGG | - | chr4_1:64321565-64321584 | Msa0563880:intron | 40.0% | |
| AGGAATTCACACTTGTGCTT+CGG | - | chr4_1:64321620-64321639 | Msa0563880:intron | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:64321644-64321663 | Msa0563880:CDS | 40.0% | |
| GTGCAGAATCCATACACATT+GGG | - | chr4_1:64321645-64321664 | Msa0563880:CDS | 40.0% | |
| CAAGGTTTACCCAATGTGTA+TGG | + | chr4_1:64321657-64321676 | None:intergenic | 40.0% | |
| TACACATTGGGTAAACCTTG+TGG | - | chr4_1:64321657-64321676 | Msa0563880:CDS | 40.0% | |
| ATAGCAAAATGTCTCTGCAG+AGG | + | chr4_1:64321923-64321942 | None:intergenic | 40.0% | |
| TCTGATACAGTCCTGCAAAT+TGG | + | chr4_1:64321983-64322002 | None:intergenic | 40.0% | |
| TATGTTCTTGAGACCATAGC+AGG | - | chr4_1:64322010-64322029 | Msa0563880:CDS | 40.0% | |
| GCATCAAAGTTCATCCCAAA+AGG | - | chr4_1:64322064-64322083 | Msa0563880:CDS | 40.0% | |
| TCAAAGTTCATCCCAAAAGG+TGG | - | chr4_1:64322067-64322086 | Msa0563880:CDS | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:64322081-64322100 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:64322082-64322101 | None:intergenic | 40.0% |
| GTTTGGAAATGACACCTTAC+TGG | - | chr4_1:64322159-64322178 | Msa0563880:CDS | 40.0% | |
| AGCTACACCTGAACACATTA+AGG | - | chr4_1:64322194-64322213 | Msa0563880:intron | 40.0% | |
| GGACTTACCTTAATGTGTTC+AGG | + | chr4_1:64322204-64322223 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | - | chr4_1:64322298-64322317 | Msa0563880:intron | 40.0% | |
| GTGAAGCAACTAACTCTTTC+AGG | + | chr4_1:64322432-64322451 | None:intergenic | 40.0% | |
| GTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:64322720-64322739 | Msa0563880:intron | 40.0% | |
| ATGACAAGATGGTCACAAGA+TGG | - | chr4_1:64322777-64322796 | Msa0563880:intron | 40.0% | |
| TGACAAGATGGTCACAAGAT+GGG | - | chr4_1:64322778-64322797 | Msa0563880:intron | 40.0% | |
| AATAGCAAGTACGTGGCTAA+AGG | + | chr4_1:64322859-64322878 | None:intergenic | 40.0% | |
| !! | TTTAGCCACGTACTTGCTAT+TGG | - | chr4_1:64322858-64322877 | Msa0563880:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:64322899-64322918 | Msa0563880:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:64322900-64322919 | Msa0563880:CDS | 40.0% | |
| ! | TATGAAAAGGGTGTGCCATT+TGG | - | chr4_1:64322912-64322931 | Msa0563880:CDS | 40.0% |
| !! | GTGCCATTTGGAATTTGCTT+TGG | - | chr4_1:64322924-64322943 | Msa0563880:CDS | 40.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | + | chr4_1:64322930-64322949 | None:intergenic | 40.0% | |
| ! | CCATTTGGAATTTGCTTTGG+AGG | - | chr4_1:64322927-64322946 | Msa0563880:CDS | 40.0% |
| TATAACTTTCGAAAGGGAGG+TGG | + | chr4_1:64323023-64323042 | None:intergenic | 40.0% | |
| TCTGAAAATCTACGGGACAA+TGG | - | chr4_1:64323190-64323209 | Msa0563880:CDS | 40.0% | |
| GTATGGTGAAGTTGTACTCA+TGG | - | chr4_1:64323222-64323241 | Msa0563880:CDS | 40.0% | |
| !! | CGTAGTAATTTCAGGTTGAG+CGG | - | chr4_1:64323296-64323315 | Msa0563880:CDS | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | - | chr4_1:64320566-64320585 | Msa0563880:three_prime_UTR | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:64320579-64320598 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:64320580-64320599 | Msa0563880:three_prime_UTR | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | - | chr4_1:64320692-64320711 | Msa0563880:three_prime_UTR | 45.0% | |
| TCCAAAACCCGGTTCTCAAA+GGG | - | chr4_1:64320693-64320712 | Msa0563880:three_prime_UTR | 45.0% | |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:64320734-64320753 | None:intergenic | 45.0% | |
| ATAGAGCTGACCAAGAGAGA+TGG | - | chr4_1:64320753-64320772 | Msa0563880:three_prime_UTR | 45.0% | |
| TAGAGCTGACCAAGAGAGAT+GGG | - | chr4_1:64320754-64320773 | Msa0563880:three_prime_UTR | 45.0% | |
| !!! | CTGCTTTTTCCCATCTCTCT+TGG | + | chr4_1:64320766-64320785 | None:intergenic | 45.0% |
| GATAAGCTAAACACCACTGC+AGG | - | chr4_1:64320848-64320867 | Msa0563880:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | - | chr4_1:64320874-64320893 | Msa0563880:CDS | 45.0% |
| TGGGGCTATTATATTGGGGA+AGG | - | chr4_1:64320937-64320956 | Msa0563880:CDS | 45.0% | |
| TTAACCGTAGCTGAGCTTGT+TGG | - | chr4_1:64321323-64321342 | Msa0563880:intron | 45.0% | |
| ! | TAACCGTAGCTGAGCTTGTT+GGG | - | chr4_1:64321324-64321343 | Msa0563880:intron | 45.0% |
| ! | CGCCATGAATGTGTTTTGTG+GGG | + | chr4_1:64321367-64321386 | None:intergenic | 45.0% |
| TTCCATAAGCTTCGGTCCAT+TGG | + | chr4_1:64321450-64321469 | None:intergenic | 45.0% | |
| GGCCATGTAATTAGGACCTT+TGG | + | chr4_1:64321497-64321516 | None:intergenic | 45.0% | |
| TGGTTGGAGGCCATGTAATT+AGG | + | chr4_1:64321505-64321524 | None:intergenic | 45.0% | |
| AAACCTTGTGGATCAAGCAG+TGG | - | chr4_1:64321669-64321688 | Msa0563880:CDS | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:64321729-64321748 | Msa0563880:CDS | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | + | chr4_1:64321748-64321767 | None:intergenic | 45.0% | |
| CTACTAGTTAGGCCAACTGT+TGG | + | chr4_1:64321801-64321820 | None:intergenic | 45.0% | |
| CTACACCTGCTCTACTAGTT+AGG | + | chr4_1:64321812-64321831 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | - | chr4_1:64321826-64321845 | Msa0563880:CDS | 45.0% | |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | + | chr4_1:64322026-64322045 | None:intergenic | 45.0% |
| GAAAGGAAAGAGATTGGGAG+TGG | - | chr4_1:64322120-64322139 | Msa0563880:CDS | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | - | chr4_1:64322444-64322463 | Msa0563880:intron | 45.0% | |
| ! | ACTTCTGCCAAGCTTTTCAC+TGG | + | chr4_1:64322454-64322473 | None:intergenic | 45.0% |
| TGAGTATGGCCAAGATGTCA+TGG | - | chr4_1:64322698-64322717 | Msa0563880:intron | 45.0% | |
| ACGTGGCTAAAGGACCAAAA+AGG | + | chr4_1:64322849-64322868 | None:intergenic | 45.0% | |
| AACCTCCAATAGCAAGTACG+TGG | + | chr4_1:64322866-64322885 | None:intergenic | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:64322870-64322889 | Msa0563880:CDS | 45.0% |
| ! | ACACCCTTTTCATATCCTGC+TGG | + | chr4_1:64322906-64322925 | None:intergenic | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGC+TGG | + | chr4_1:64320625-64320644 | None:intergenic | 50.0% |
| CCAAAACCCGGTTCTCAAAG+GGG | - | chr4_1:64320694-64320713 | Msa0563880:three_prime_UTR | 50.0% | |
| ! | TCCAACACCCCTTTGAGAAC+CGG | + | chr4_1:64320704-64320723 | None:intergenic | 50.0% |
| CAATGCAAAAGAGCCTGCAG+TGG | + | chr4_1:64320864-64320883 | None:intergenic | 50.0% | |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | - | chr4_1:64320866-64320885 | Msa0563880:CDS | 50.0% |
| TTAACAACGCCTGCGTCTCT+TGG | + | chr4_1:64320902-64320921 | None:intergenic | 50.0% | |
| ATATGACCACTCACTCAGGG+TGG | + | chr4_1:64320963-64320982 | None:intergenic | 50.0% | |
| CTAATGGAGCTCCTAGTGCT+TGG | - | chr4_1:64320990-64321009 | Msa0563880:CDS | 50.0% | |
| !! | AACCGTAGCTGAGCTTGTTG+GGG | - | chr4_1:64321325-64321344 | Msa0563880:intron | 50.0% |
| TTCCCCAACAAGCTCAGCTA+CGG | + | chr4_1:64321330-64321349 | None:intergenic | 50.0% | |
| ! | GTTTTGTGGGGATCGAACTG+CGG | + | chr4_1:64321355-64321374 | None:intergenic | 50.0% |
| GTCCAATGGACCGAAGCTTA+TGG | - | chr4_1:64321445-64321464 | Msa0563880:CDS | 50.0% | |
| !!! | TGTAGCTTTTGGGGTGCCAA+AGG | - | chr4_1:64321478-64321497 | Msa0563880:CDS | 50.0% |
| GATCCACTGCTTGATCCACA+AGG | + | chr4_1:64321675-64321694 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTTATGCCCTTC+AGG | - | chr4_1:64321750-64321769 | Msa0563880:CDS | 50.0% |
| GTGGGCATCAAACCAACAGT+TGG | - | chr4_1:64321786-64321805 | Msa0563880:CDS | 50.0% | |
| ! | GTTGGCCTAACTAGTAGAGC+AGG | - | chr4_1:64321804-64321823 | Msa0563880:CDS | 50.0% |
| AGTTCCAATTAGCCCAAGGC+AGG | - | chr4_1:64321830-64321849 | Msa0563880:CDS | 50.0% | |
| CAGCTTGCACCATGACATCT+TGG | + | chr4_1:64322710-64322729 | None:intergenic | 50.0% | |
| !! | AGCCACGTACTTGCTATTGG+AGG | - | chr4_1:64322861-64322880 | Msa0563880:CDS | 50.0% |
| !! | CCCCTTTGAGAACCGGGTTT+TGG | + | chr4_1:64320697-64320716 | None:intergenic | 55.0% |
| ! | CCAACACCCCTTTGAGAACC+GGG | + | chr4_1:64320703-64320722 | None:intergenic | 55.0% |
| !! | GGTTCTCAAAGGGGTGTTGG+AGG | - | chr4_1:64320703-64320722 | Msa0563880:three_prime_UTR | 55.0% |
| ! | TCCTAGTGCTTGGAGTGCCA+GGG | - | chr4_1:64321000-64321019 | Msa0563880:CDS | 55.0% |
| TACCTTTCCATGTCCACCCC+TGG | + | chr4_1:64321020-64321039 | None:intergenic | 55.0% | |
| !! | GTAGCTGAGCTTGTTGGGGA+AGG | - | chr4_1:64321329-64321348 | Msa0563880:intron | 55.0% |
| GTGTCCTGCCTTGGGCTAAT+TGG | + | chr4_1:64321837-64321856 | None:intergenic | 55.0% | |
| ACCCAACTGTGTCCTGCCTT+GGG | + | chr4_1:64321845-64321864 | None:intergenic | 55.0% | |
| TACCCAACTGTGTCCTGCCT+TGG | + | chr4_1:64321846-64321865 | None:intergenic | 55.0% | |
| ! | CCCGGTTCTCAAAGGGGTGT+TGG | - | chr4_1:64320700-64320719 | Msa0563880:three_prime_UTR | 60.0% |
| ! | TCAGTGGTGCCAAGAGACGC+AGG | - | chr4_1:64320890-64320909 | Msa0563880:CDS | 60.0% |
| ! | CTCCTAGTGCTTGGAGTGCC+AGG | - | chr4_1:64320999-64321018 | Msa0563880:CDS | 60.0% |
| ! | CCTAGTGCTTGGAGTGCCAG+GGG | - | chr4_1:64321001-64321020 | Msa0563880:CDS | 60.0% |
| TGCCAGGGGTGGACATGGAA+AGG | - | chr4_1:64321015-64321034 | Msa0563880:CDS | 60.0% | |
| AGCCCAAGGCAGGACACAGT+TGG | - | chr4_1:64321840-64321859 | Msa0563880:CDS | 60.0% | |
| GCCCAAGGCAGGACACAGTT+GGG | - | chr4_1:64321841-64321860 | Msa0563880:CDS | 60.0% | |
| CCTGCTGGAACACTCACTCC+AGG | + | chr4_1:64322891-64322910 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | - | chr4_1:64322888-64322907 | Msa0563880:CDS | 60.0% | |
| GGAAGGCCACCCTGAGTGAG+TGG | - | chr4_1:64320954-64320973 | Msa0563880:CDS | 65.0% | |
| CCCCTGGCACTCCAAGCACT+AGG | + | chr4_1:64321004-64321023 | None:intergenic | 65.0% | |
| ! | AGTGCTTGGAGTGCCAGGGG+TGG | - | chr4_1:64321004-64321023 | Msa0563880:CDS | 65.0% |
| ! | TGGAGTGCCAGGGGTGGACA+TGG | - | chr4_1:64321010-64321029 | Msa0563880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64320483 | 64323362 | 64320483 | ID=Msa0563880;Name=Msa0563880 |
| chr4_1 | mRNA | 64320483 | 64323362 | 64320483 | ID=Msa0563880-mRNA-1;Parent=Msa0563880;Name=Msa0563880-mRNA-1;_AED=0.40;_eAED=0.40;_QI=5|1|1|1|1|1|5|319|514 |
| chr4_1 | exon | 64320483 | 64321155 | 64320483 | ID=Msa0563880-mRNA-1:exon:20580;Parent=Msa0563880-mRNA-1 |
| chr4_1 | exon | 64321341 | 64321533 | 64321341 | ID=Msa0563880-mRNA-1:exon:20579;Parent=Msa0563880-mRNA-1 |
| chr4_1 | exon | 64321630 | 64321866 | 64321630 | ID=Msa0563880-mRNA-1:exon:20578;Parent=Msa0563880-mRNA-1 |
| chr4_1 | exon | 64321983 | 64322194 | 64321983 | ID=Msa0563880-mRNA-1:exon:20577;Parent=Msa0563880-mRNA-1 |
| chr4_1 | exon | 64322809 | 64323362 | 64322809 | ID=Msa0563880-mRNA-1:exon:20576;Parent=Msa0563880-mRNA-1 |
| chr4_1 | five_prime_UTR | 64323358 | 64323362 | 64323358 | ID=Msa0563880-mRNA-1:five_prime_utr;Parent=Msa0563880-mRNA-1 |
| chr4_1 | CDS | 64322809 | 64323357 | 64322809 | ID=Msa0563880-mRNA-1:cds;Parent=Msa0563880-mRNA-1 |
| chr4_1 | CDS | 64321983 | 64322194 | 64321983 | ID=Msa0563880-mRNA-1:cds;Parent=Msa0563880-mRNA-1 |
| chr4_1 | CDS | 64321630 | 64321866 | 64321630 | ID=Msa0563880-mRNA-1:cds;Parent=Msa0563880-mRNA-1 |
| chr4_1 | CDS | 64321341 | 64321533 | 64321341 | ID=Msa0563880-mRNA-1:cds;Parent=Msa0563880-mRNA-1 |
| chr4_1 | CDS | 64320802 | 64321155 | 64320802 | ID=Msa0563880-mRNA-1:cds;Parent=Msa0563880-mRNA-1 |
| chr4_1 | three_prime_UTR | 64320483 | 64320801 | 64320483 | ID=Msa0563880-mRNA-1:three_prime_utr;Parent=Msa0563880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
