Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577470 | XP_013446599.1 | 77.492 | 622 | 32 | 4 | 1 | 622 | 1 | 514 | 0.0 | 925 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577470 | sp|A0A1P8B760|AMI4G_ARATH | 62.994 | 354 | 119 | 4 | 27 | 377 | 30 | 374 | 4.79e-136 | 410 |
| Msa0577470 | sp|A0A1P8B760|AMI4G_ARATH | 60.870 | 184 | 68 | 3 | 440 | 619 | 327 | 510 | 1.84e-61 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577470 | A0A072TTV4 | 77.492 | 622 | 32 | 4 | 1 | 622 | 1 | 514 | 0.0 | 925 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563880 | Msa0577470 | 0.917148 | 7.555828e-86 | -8.615850e-47 |
| Msa0577470 | Msa0577800 | 0.988367 | 9.680737e-174 | -8.615850e-47 |
| Msa0577470 | Msa1067910 | 0.804700 | 1.904787e-49 | -8.615850e-47 |
| Msa0577470 | Msa1076640 | 0.800975 | 1.120105e-48 | -8.615850e-47 |
| Msa0577470 | Msa1306810 | 0.964969 | 5.307950e-124 | -8.615850e-47 |
| Msa0577470 | Msa1395580 | 0.814744 | 1.318211e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577470 | MtrunA17_Chr8g0377701 | 77.492 | 622 | 32 | 4 | 1 | 622 | 1 | 514 | 0.0 | 925 |
| Msa0577470 | MtrunA17_Chr8g0377691 | 74.277 | 622 | 51 | 5 | 1 | 622 | 1 | 513 | 0.0 | 870 |
| Msa0577470 | MtrunA17_Chr8g0377641 | 68.650 | 622 | 81 | 6 | 1 | 621 | 1 | 509 | 0.0 | 819 |
| Msa0577470 | MtrunA17_Chr8g0377681 | 67.370 | 616 | 91 | 6 | 6 | 620 | 3 | 509 | 0.0 | 787 |
| Msa0577470 | MtrunA17_Chr8g0377651 | 84.350 | 377 | 54 | 2 | 1 | 376 | 3 | 375 | 0.0 | 632 |
| Msa0577470 | MtrunA17_Chr8g0377651 | 86.339 | 183 | 25 | 0 | 440 | 622 | 331 | 513 | 9.47e-110 | 340 |
| Msa0577470 | MtrunA17_Chr4g0037521 | 58.915 | 387 | 138 | 9 | 33 | 408 | 26 | 402 | 3.74e-140 | 417 |
| Msa0577470 | MtrunA17_Chr4g0037521 | 58.242 | 182 | 72 | 3 | 440 | 617 | 326 | 507 | 2.80e-59 | 206 |
| Msa0577470 | MtrunA17_Chr4g0037491 | 60.335 | 179 | 59 | 5 | 206 | 376 | 1 | 175 | 3.19e-60 | 203 |
| Msa0577470 | MtrunA17_Chr4g0037491 | 52.874 | 174 | 76 | 4 | 440 | 608 | 129 | 301 | 9.20e-53 | 183 |
| Msa0577470 | MtrunA17_Chr8g0377661 | 88.158 | 76 | 9 | 0 | 547 | 622 | 1 | 76 | 1.19e-38 | 137 |
| Msa0577470 | MtrunA17_Chr4g0037501 | 65.957 | 94 | 30 | 2 | 106 | 197 | 2 | 95 | 5.95e-30 | 113 |
| Msa0577470 | MtrunA17_Chr8g0385461 | 34.000 | 250 | 148 | 7 | 41 | 288 | 162 | 396 | 9.37e-30 | 124 |
| Msa0577470 | MtrunA17_Chr3g0097801 | 33.574 | 277 | 175 | 5 | 45 | 318 | 46 | 316 | 1.50e-27 | 117 |
| Msa0577470 | MtrunA17_Chr2g0279961 | 27.273 | 297 | 205 | 5 | 42 | 334 | 130 | 419 | 1.89e-21 | 98.6 |
| Msa0577470 | MtrunA17_Chr3g0130801 | 28.346 | 254 | 170 | 7 | 41 | 289 | 200 | 446 | 6.96e-15 | 78.2 |
| Msa0577470 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 141 | 258 | 63 | 176 | 2.42e-13 | 72.4 |
| Msa0577470 | MtrunA17_Chr8g0384851 | 26.838 | 272 | 188 | 6 | 22 | 288 | 117 | 382 | 4.83e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577470 | AT4G34880.2 | 62.994 | 354 | 119 | 4 | 27 | 377 | 30 | 374 | 4.87e-137 | 410 |
| Msa0577470 | AT4G34880.2 | 60.870 | 184 | 68 | 3 | 440 | 619 | 327 | 510 | 1.87e-62 | 215 |
| Msa0577470 | AT4G34880.1 | 53.824 | 353 | 107 | 5 | 27 | 377 | 30 | 328 | 1.25e-113 | 348 |
| Msa0577470 | AT4G34880.1 | 60.870 | 184 | 68 | 3 | 440 | 619 | 281 | 464 | 1.03e-62 | 215 |
| Msa0577470 | AT5G07360.1 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 3.74e-28 | 120 |
| Msa0577470 | AT5G07360.3 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 3.74e-28 | 120 |
| Msa0577470 | AT3G25660.1 | 34.237 | 295 | 177 | 9 | 53 | 341 | 57 | 340 | 2.79e-26 | 113 |
| Msa0577470 | AT5G07360.2 | 33.197 | 244 | 143 | 7 | 41 | 282 | 204 | 429 | 1.13e-24 | 109 |
| Msa0577470 | AT5G64440.1 | 26.950 | 282 | 190 | 6 | 42 | 318 | 131 | 401 | 5.15e-19 | 91.7 |
| Msa0577470 | AT1G08980.1 | 39.496 | 119 | 66 | 3 | 141 | 258 | 64 | 177 | 5.49e-14 | 74.7 |
Find 154 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACATACTCACCAATTT+TGG | 0.161024 | 4_1:-81840808 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:+81838790 | Msa0577470:CDS |
| CCCCTTTGAGAACCGGGTTT+TGG | 0.237663 | 4_1:-81838682 | None:intergenic |
| GTGAAGCAACTAACTCTTTC+AGG | 0.258408 | 4_1:-81840741 | None:intergenic |
| GACACACACATAACTCTTTC+AGG | 0.260932 | 4_1:-81840417 | None:intergenic |
| GACACACACATAACTCTTTC+AGG | 0.260932 | 4_1:-81840579 | None:intergenic |
| CTGAAATTACTACGTCAAAT+TGG | 0.279005 | 4_1:-81841599 | None:intergenic |
| AGCTACACCTGAACACATTA+AGG | 0.284913 | 4_1:+81840182 | Msa0577470:CDS |
| TACCCAACTGTGTCCTGCCT+TGG | 0.287369 | 4_1:-81839831 | None:intergenic |
| GAAAGCTGGGGCTATTATAT+TGG | 0.290528 | 4_1:+81838919 | Msa0577470:CDS |
| TCAGTCATATTCATGGAAAT+TGG | 0.291590 | 4_1:-81841375 | None:intergenic |
| GTTTGGAAATGACACCTTAC+TGG | 0.294526 | 4_1:+81840147 | Msa0577470:CDS |
| CTCCTAGTGCTTGGAGTGCC+AGG | 0.297565 | 4_1:+81838987 | Msa0577470:CDS |
| GGACTTACCTTAATGTGTTC+AGG | 0.300442 | 4_1:-81840189 | None:intergenic |
| GTGTCCTGCCTTGGGCTAAT+TGG | 0.303506 | 4_1:-81839822 | None:intergenic |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:-81840067 | None:intergenic |
| CAATTTGACGTAGTAATTTC+AGG | 0.308301 | 4_1:+81841600 | Msa0577470:three_prime_UTR |
| AATATCAGTAGCAGCAAATA+TGG | 0.311054 | 4_1:+81839686 | Msa0577470:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:-81838622 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:-81838803 | None:intergenic |
| CAACAAGAAACACCCAAAAT+TGG | 0.320154 | 4_1:+81840795 | Msa0577470:CDS |
| AAAACCTGAAGGGCATAAAA+TGG | 0.325616 | 4_1:-81839742 | None:intergenic |
| AAGCAGCAAGTTCTCTTTCA+AGG | 0.348616 | 4_1:+81838768 | Msa0577470:CDS |
| AGTCTAAATTATAACATTGT+TGG | 0.349517 | 4_1:+81841456 | Msa0577470:three_prime_UTR |
| TCCAACACCCCTTTGAGAAC+CGG | 0.350483 | 4_1:-81838689 | None:intergenic |
| TGTGTACTTTCTTCAAAATC+AGG | 0.352651 | 4_1:+81840440 | Msa0577470:CDS |
| TGTGTACTTTCTTCAAAATC+AGG | 0.352651 | 4_1:+81840602 | Msa0577470:CDS |
| GTGCCATTTGGAATTTGCTT+TGG | 0.364629 | 4_1:+81841236 | Msa0577470:CDS |
| TGAGTGAGTGGTCATATTAC+AGG | 0.365318 | 4_1:+81838954 | Msa0577470:CDS |
| TTTAGCCACGTACTTGCTAT+TGG | 0.366366 | 4_1:+81841170 | Msa0577470:CDS |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 4_1:-81838719 | None:intergenic |
| AAAGCTGGGGCTATTATATT+GGG | 0.377072 | 4_1:+81838920 | Msa0577470:CDS |
| CAGCTTGCACCATGACATCT+TGG | 0.377208 | 4_1:-81841019 | None:intergenic |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:-81839968 | None:intergenic |
| TGGATTGAAAGGAAAGAGAT+TGG | 0.383085 | 4_1:+81840102 | Msa0577470:CDS |
| AGAAGAATCAGTCATATTCA+TGG | 0.384908 | 4_1:-81841382 | None:intergenic |
| GTAAGACTATACTACGAGTT+TGG | 0.390772 | 4_1:+81840130 | Msa0577470:CDS |
| TATGAAAAGGGTGTGCCATT+TGG | 0.392987 | 4_1:+81841224 | Msa0577470:CDS |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:-81840404 | None:intergenic |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:-81840566 | None:intergenic |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:-81840728 | None:intergenic |
| CAAGGTTTACCCAATGTGTA+TGG | 0.395569 | 4_1:-81839642 | None:intergenic |
| CAGGCGTTGTTAACAAGTTA+AGG | 0.399616 | 4_1:+81838897 | Msa0577470:CDS |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:-81838542 | None:intergenic |
| CCATTTGGAATTTGCTTTGG+AGG | 0.404999 | 4_1:+81841239 | Msa0577470:CDS |
| CTTTCAACTTTGAAGACTCA+TGG | 0.405050 | 4_1:+81838457 | None:intergenic |
| TGGTCATATTACAGGTCTAA+TGG | 0.405157 | 4_1:+81838962 | Msa0577470:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:+81841182 | Msa0577470:CDS |
| ACCCAACTGTGTCCTGCCTT+GGG | 0.411284 | 4_1:-81839830 | None:intergenic |
| GCTTTCTTTGGAAGGCAAGC+TGG | 0.416703 | 4_1:-81838610 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:-81841278 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:+81838814 | Msa0577470:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:+81840082 | Msa0577470:CDS |
| CTACACCTGCTCTACTAGTT+AGG | 0.423846 | 4_1:-81839797 | None:intergenic |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.430240 | 4_1:+81838905 | Msa0577470:CDS |
| TTAACAACGCCTGCGTCTCT+TGG | 0.430259 | 4_1:-81838887 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.432727 | 4_1:+81841038 | Msa0577470:CDS |
| ACGTGGCTAAAGGACCAAAA+AGG | 0.434770 | 4_1:-81841158 | None:intergenic |
| TTATCACCAACATTGTTGAT+TGG | 0.441192 | 4_1:+81841479 | Msa0577470:three_prime_UTR |
| TTGTAGGAGAAACTTGAGTA+TGG | 0.448530 | 4_1:+81840996 | Msa0577470:intron |
| CCAACACCCCTTTGAGAACC+GGG | 0.448929 | 4_1:-81838688 | None:intergenic |
| GACAATGGATTCTACATGTA+TGG | 0.451823 | 4_1:+81841517 | Msa0577470:three_prime_UTR |
| TCCAAAACCCGGTTCTCAAA+GGG | 0.455269 | 4_1:+81838681 | Msa0577470:CDS |
| TTGATTGGTCTGAAAATCTA+CGG | 0.472177 | 4_1:+81841494 | Msa0577470:three_prime_UTR |
| CTAAAGAAAGATGGATTGAA+AGG | 0.478881 | 4_1:+81840091 | Msa0577470:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.485064 | 4_1:+81841248 | Msa0577470:CDS |
| TATGTTCTTGAGACCATAGC+AGG | 0.488452 | 4_1:+81839998 | Msa0577470:CDS |
| TCCTAGTGCTTGGAGTGCCA+GGG | 0.489006 | 4_1:+81838988 | Msa0577470:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.496274 | 4_1:+81838906 | Msa0577470:CDS |
| GCCCAAGGCAGGACACAGTT+GGG | 0.500606 | 4_1:+81839829 | Msa0577470:CDS |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4_1:+81841211 | Msa0577470:CDS |
| TTCAGACCAATCAACAATGT+TGG | 0.504254 | 4_1:-81841485 | None:intergenic |
| AAGGGAGTGTAACTAGAAGA+AGG | 0.505383 | 4_1:-81838523 | None:intergenic |
| CCCGGTTCTCAAAGGGGTGT+TGG | 0.507779 | 4_1:+81838688 | Msa0577470:CDS |
| CAAACTTATAACTTTCGAAA+GGG | 0.508484 | 4_1:-81841338 | None:intergenic |
| TAGAGCTGACCAAGAGAGAT+GGG | 0.509333 | 4_1:+81838742 | Msa0577470:CDS |
| TGTAATATGACCACTCACTC+AGG | 0.511423 | 4_1:-81838952 | None:intergenic |
| GTGCAAGCTGAAAAGACAAA+TGG | 0.511979 | 4_1:+81841032 | Msa0577470:CDS |
| GGATTGAAAGGAAAGAGATT+GGG | 0.512951 | 4_1:+81840103 | Msa0577470:CDS |
| AGCCACGTACTTGCTATTGG+AGG | 0.513545 | 4_1:+81841173 | Msa0577470:CDS |
| GCATCAAAGTTCATCCCAAA+AGG | 0.514495 | 4_1:+81840052 | Msa0577470:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.516133 | 4_1:+81838680 | Msa0577470:CDS |
| TGGAGTGCCAGGGGTGGACA+TGG | 0.517155 | 4_1:+81838998 | Msa0577470:CDS |
| AATAGCAAGTACGTGGCTAA+AGG | 0.517260 | 4_1:-81841168 | None:intergenic |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:-81838618 | None:intergenic |
| CTAATGGAGCTCCTAGTGCT+TGG | 0.519023 | 4_1:+81838978 | Msa0577470:CDS |
| TACCTTTCCATGTCCACCCC+TGG | 0.520730 | 4_1:-81839005 | None:intergenic |
| TATAACTTTCGAAAGGGAGG+TGG | 0.521580 | 4_1:-81841332 | None:intergenic |
| GTGCAGAATCCATACACATT+GGG | 0.521797 | 4_1:+81839633 | Msa0577470:intron |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:+81838776 | Msa0577470:CDS |
| AGTGCTTGGAGTGCCAGGGG+TGG | 0.526595 | 4_1:+81838992 | Msa0577470:CDS |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.531370 | 4_1:-81840011 | None:intergenic |
| TGCCAGGGGTGGACATGGAA+AGG | 0.536044 | 4_1:+81839003 | Msa0577470:CDS |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.540531 | 4_1:-81841239 | None:intergenic |
| CTACTAGTTAGGCCAACTGT+TGG | 0.540942 | 4_1:-81839786 | None:intergenic |
| AGCCCAAGGCAGGACACAGT+TGG | 0.542690 | 4_1:+81839828 | Msa0577470:CDS |
| CTAGAAGAAGGATTATAGAG+AGG | 0.543663 | 4_1:-81838511 | None:intergenic |
| CCTAGTGCTTGGAGTGCCAG+GGG | 0.544299 | 4_1:+81838989 | Msa0577470:CDS |
| ATGACAAGATGGTCACAAGA+TGG | 0.546422 | 4_1:+81841089 | Msa0577470:CDS |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:+81840756 | Msa0577470:CDS |
| TCAAACTTATAACTTTCGAA+AGG | 0.548021 | 4_1:-81841339 | None:intergenic |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:-81838541 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:+81838568 | Msa0577470:CDS |
| GGTTCTCAAAGGGGTGTTGG+AGG | 0.557265 | 4_1:+81838691 | Msa0577470:CDS |
| AGTTCCAATTAGCCCAAGGC+AGG | 0.559502 | 4_1:+81839818 | Msa0577470:CDS |
| TCACGTTATCTTAACTCACT+AGG | 0.563298 | 4_1:+81841633 | Msa0577470:three_prime_UTR |
| CGTAGTAATTTCAGGTTGAG+CGG | 0.566097 | 4_1:+81841608 | Msa0577470:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:+81838554 | Msa0577470:CDS |
| TTTGCTTTGGAGGTTTGAAA+GGG | 0.567329 | 4_1:+81841249 | Msa0577470:CDS |
| TGATTGGTCTGAAAATCTAC+GGG | 0.570172 | 4_1:+81841495 | Msa0577470:three_prime_UTR |
| CCCCTGGCACTCCAAGCACT+AGG | 0.572355 | 4_1:-81838989 | None:intergenic |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:-81838564 | None:intergenic |
| GATAAGCTAAACACCACTGC+AGG | 0.575011 | 4_1:+81838836 | Msa0577470:CDS |
| GAAAGGAAAGAGATTGGGAG+TGG | 0.578868 | 4_1:+81840108 | Msa0577470:CDS |
| TGACAAGATGGTCACAAGAT+GGG | 0.579154 | 4_1:+81841090 | Msa0577470:CDS |
| GTATGGTGAAGTTGTACTCA+TGG | 0.581463 | 4_1:+81841534 | Msa0577470:three_prime_UTR |
| ATAGAGCTGACCAAGAGAGA+TGG | 0.582777 | 4_1:+81838741 | Msa0577470:CDS |
| GTTGGCCTAACTAGTAGAGC+AGG | 0.585664 | 4_1:+81839792 | Msa0577470:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:+81841078 | Msa0577470:CDS |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4_1:-81841200 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4_1:+81841212 | Msa0577470:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:+81838547 | Msa0577470:CDS |
| TCAGTGGTGCCAAGAGACGC+AGG | 0.598008 | 4_1:+81838878 | Msa0577470:CDS |
| ACTTATAACTTTCGAAAGGG+AGG | 0.598476 | 4_1:-81841335 | None:intergenic |
| TGTGCAGAATCCATACACAT+TGG | 0.601083 | 4_1:+81839632 | Msa0577470:intron |
| ACTACTGAGTTAAAACCTGA+AGG | 0.603248 | 4_1:-81839753 | None:intergenic |
| TACACATTGGGTAAACCTTG+TGG | 0.604950 | 4_1:+81839645 | Msa0577470:CDS |
| GGAAGGCCACCCTGAGTGAG+TGG | 0.605485 | 4_1:+81838942 | Msa0577470:CDS |
| TCTGAAAATCTACGGGACAA+TGG | 0.607126 | 4_1:+81841502 | Msa0577470:three_prime_UTR |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4_1:+81841200 | Msa0577470:CDS |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:+81840286 | Msa0577470:intron |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:+81840448 | Msa0577470:CDS |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:+81840610 | Msa0577470:CDS |
| CTACTGAGTTAAAACCTGAA+GGG | 0.616814 | 4_1:-81839752 | None:intergenic |
| GTAATATGACCACTCACTCA+GGG | 0.623022 | 4_1:-81838951 | None:intergenic |
| TGGGGCTATTATATTGGGGA+AGG | 0.627339 | 4_1:+81838925 | Msa0577470:CDS |
| TGAGTATGGCCAAGATGTCA+TGG | 0.627762 | 4_1:+81841010 | Msa0577470:CDS |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:-81839733 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.628996 | 4_1:+81839774 | Msa0577470:CDS |
| CCAAAACCCGGTTCTCAAAG+GGG | 0.630408 | 4_1:+81838682 | Msa0577470:CDS |
| CATATTCATGGAAATTGGAG+AGG | 0.631640 | 4_1:-81841370 | None:intergenic |
| AATATGGTAACTGTGTCACT+TGG | 0.633916 | 4_1:+81839702 | Msa0577470:CDS |
| GATCCACTGCTTGATCCACA+AGG | 0.638729 | 4_1:-81839660 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.639092 | 4_1:+81839814 | Msa0577470:CDS |
| AAACCTTGTGGATCAAGCAG+TGG | 0.643969 | 4_1:+81839657 | Msa0577470:CDS |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.646475 | 4_1:+81838907 | Msa0577470:CDS |
| ACAAATCAAAATCCAAAACC+CGG | 0.646481 | 4_1:+81838670 | Msa0577470:CDS |
| TCAAAGTTCATCCCAAAAGG+TGG | 0.647641 | 4_1:+81840055 | Msa0577470:CDS |
| ATATTCATGGAAATTGGAGA+GGG | 0.650938 | 4_1:-81841369 | None:intergenic |
| CAATGCAAAAGAGCCTGCAG+TGG | 0.652443 | 4_1:-81838849 | None:intergenic |
| AAGCTGGGGCTATTATATTG+GGG | 0.688618 | 4_1:+81838921 | Msa0577470:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:+81839717 | Msa0577470:CDS |
| AACCTCCAATAGCAAGTACG+TGG | 0.718611 | 4_1:-81841175 | None:intergenic |
| ATATGACCACTCACTCAGGG+TGG | 0.758632 | 4_1:-81838948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTTTATTTAAAAGTT+TGG | - | chr4_1:81839174-81839193 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTCAGTTTTATA+AGG | - | chr4_1:81839249-81839268 | None:intergenic | 10.0% |
| !!! | AATATTTTCTTACTTTTTTT+TGG | - | chr4_1:81839513-81839532 | None:intergenic | 10.0% |
| !!! | TACATAATAAATAATAGTTT+TGG | - | chr4_1:81840213-81840232 | None:intergenic | 10.0% |
| !! | AAACAAAATTTAAGAGTTAT+AGG | - | chr4_1:81839085-81839104 | None:intergenic | 15.0% |
| !!! | AAGTAAGAAAATATTTTTGA+AGG | + | chr4_1:81839518-81839537 | Msa0577470:intron | 15.0% |
| !! | AAATTTAAGAGTTATAGGTT+TGG | - | chr4_1:81839080-81839099 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTAGTTAAGTGA+TGG | + | chr4_1:81839190-81839209 | Msa0577470:intron | 20.0% |
| !! | TCACTAATAGTAATACTTAA+TGG | + | chr4_1:81839273-81839292 | Msa0577470:intron | 20.0% |
| !! | CACTAATAGTAATACTTAAT+GGG | + | chr4_1:81839274-81839293 | Msa0577470:intron | 20.0% |
| !!! | AAATATTATGTGTAGCTTTT+GGG | + | chr4_1:81839456-81839475 | Msa0577470:intron | 20.0% |
| !!! | TTTTCTTACTTTTTTTTGGT+TGG | - | chr4_1:81839509-81839528 | None:intergenic | 20.0% |
| !!! | TCTTAAACTTAATTTTCTAG+CGG | - | chr4_1:81841411-81841430 | None:intergenic | 20.0% |
| !! | AGTCTAAATTATAACATTGT+TGG | + | chr4_1:81841456-81841475 | Msa0577470:three_prime_UTR | 20.0% |
| !!! | TTTGGATTTTGATTTGTTTG+AGG | - | chr4_1:81838667-81838686 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr4_1:81838806-81838825 | None:intergenic | 25.0% |
| ! | ATATTAGATTCTTAACAGCT+AGG | - | chr4_1:81839133-81839152 | None:intergenic | 25.0% |
| ! | CATAATATTTCCATAAGCTT+CGG | - | chr4_1:81839446-81839465 | None:intergenic | 25.0% |
| !! | GAAATATTATGTGTAGCTTT+TGG | + | chr4_1:81839455-81839474 | Msa0577470:intron | 25.0% |
| !! | AATATTATGTGTAGCTTTTG+GGG | + | chr4_1:81839457-81839476 | Msa0577470:intron | 25.0% |
| !!! | AAATATTTTTGAAGGCCTAA+AGG | + | chr4_1:81839526-81839545 | Msa0577470:intron | 25.0% |
| ! | ATTCATACTAAAGTTCCTAT+GGG | - | chr4_1:81839571-81839590 | None:intergenic | 25.0% |
| !! | AATGATGATTCTAGAAAATG+AGG | + | chr4_1:81839588-81839607 | Msa0577470:intron | 25.0% |
| ! | TTCACATAAAGAAAACGTAT+AGG | - | chr4_1:81839859-81839878 | None:intergenic | 25.0% |
| !!! | CTTAAAAGTTTTATCCAGTA+AGG | - | chr4_1:81840164-81840183 | None:intergenic | 25.0% |
| !! | TATACATACTCACCAATTTT+GGG | - | chr4_1:81840810-81840829 | None:intergenic | 25.0% |
| !! | TTATACATACTCACCAATTT+TGG | - | chr4_1:81840811-81840830 | None:intergenic | 25.0% |
| !! | GAAATGCTTTTGTAACAAAT+TGG | - | chr4_1:81840928-81840947 | None:intergenic | 25.0% |
| ! | AACTGTTGTATAAACATTGT+AGG | + | chr4_1:81840980-81840999 | Msa0577470:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | + | chr4_1:81841078-81841097 | Msa0577470:CDS | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr4_1:81841281-81841300 | None:intergenic | 25.0% |
| ! | CAAACTTATAACTTTCGAAA+GGG | - | chr4_1:81841341-81841360 | None:intergenic | 25.0% |
| ! | TCAAACTTATAACTTTCGAA+AGG | - | chr4_1:81841342-81841361 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | - | chr4_1:81838544-81838563 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | - | chr4_1:81838625-81838644 | None:intergenic | 30.0% | |
| ACAAATCAAAATCCAAAACC+CGG | + | chr4_1:81838670-81838689 | Msa0577470:CDS | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4_1:81838796-81838815 | Msa0577470:CDS | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | + | chr4_1:81838814-81838833 | Msa0577470:CDS | 30.0% | |
| TTAACAAGTTAAGGAAAGCT+GGG | + | chr4_1:81838906-81838925 | Msa0577470:CDS | 30.0% | |
| ! | CTTCTTACTTTATTTGACCA+TGG | + | chr4_1:81839040-81839059 | Msa0577470:intron | 30.0% |
| ! | TTAGTTAAGTGATGGAGTAT+AGG | + | chr4_1:81839198-81839217 | Msa0577470:intron | 30.0% |
| !!! | TCTTACTTTTTTTTGGTTGG+AGG | - | chr4_1:81839506-81839525 | None:intergenic | 30.0% |
| CATAATGAAACCATTCCTTT+AGG | - | chr4_1:81839544-81839563 | None:intergenic | 30.0% | |
| CATTCATACTAAAGTTCCTA+TGG | - | chr4_1:81839572-81839591 | None:intergenic | 30.0% | |
| AATATCAGTAGCAGCAAATA+TGG | + | chr4_1:81839686-81839705 | Msa0577470:CDS | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | + | chr4_1:81840082-81840101 | Msa0577470:CDS | 30.0% |
| !! | CTAAAGAAAGATGGATTGAA+AGG | + | chr4_1:81840091-81840110 | Msa0577470:CDS | 30.0% |
| TGTGTACTTTCTTCAAAATC+AGG | + | chr4_1:81840278-81840297 | Msa0577470:intron | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | + | chr4_1:81840278-81840297 | Msa0577470:intron | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | + | chr4_1:81840278-81840297 | Msa0577470:intron | 30.0% | |
| ATATTCATGGAAATTGGAGA+GGG | - | chr4_1:81841372-81841391 | None:intergenic | 30.0% | |
| TCAGTCATATTCATGGAAAT+TGG | - | chr4_1:81841378-81841397 | None:intergenic | 30.0% | |
| AGAAGAATCAGTCATATTCA+TGG | - | chr4_1:81841385-81841404 | None:intergenic | 30.0% | |
| TTATCACCAACATTGTTGAT+TGG | + | chr4_1:81841479-81841498 | Msa0577470:three_prime_UTR | 30.0% | |
| !! | TTGATTGGTCTGAAAATCTA+CGG | + | chr4_1:81841494-81841513 | Msa0577470:three_prime_UTR | 30.0% |
| CTGAAATTACTACGTCAAAT+TGG | - | chr4_1:81841602-81841621 | None:intergenic | 30.0% | |
| CAATTTGACGTAGTAATTTC+AGG | + | chr4_1:81841600-81841619 | Msa0577470:three_prime_UTR | 30.0% | |
| CTAGAAGAAGGATTATAGAG+AGG | - | chr4_1:81838514-81838533 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTGATAGCATAGA+AGG | - | chr4_1:81838545-81838564 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | + | chr4_1:81838547-81838566 | Msa0577470:CDS | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | - | chr4_1:81838621-81838640 | None:intergenic | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4_1:81838790-81838809 | Msa0577470:CDS | 35.0% |
| GTTAACAAGTTAAGGAAAGC+TGG | + | chr4_1:81838905-81838924 | Msa0577470:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | + | chr4_1:81838907-81838926 | Msa0577470:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+GGG | + | chr4_1:81838920-81838939 | Msa0577470:CDS | 35.0% | |
| TGGTCATATTACAGGTCTAA+TGG | + | chr4_1:81838962-81838981 | Msa0577470:CDS | 35.0% | |
| TGGATTACAAAGTAAGACCA+TGG | - | chr4_1:81839060-81839079 | None:intergenic | 35.0% | |
| ! | TTAAGTGATGGAGTATAGGT+TGG | + | chr4_1:81839202-81839221 | Msa0577470:intron | 35.0% |
| !! | GGACTTTTTGATAGTTTACG+AGG | + | chr4_1:81839223-81839242 | Msa0577470:intron | 35.0% |
| ACCTAAAACAAACACTTGTG+CGG | + | chr4_1:81839392-81839411 | Msa0577470:intron | 35.0% | |
| TAGTCTCATTATCAGTCCAA+TGG | + | chr4_1:81839419-81839438 | Msa0577470:intron | 35.0% | |
| !! | TTTTTGAAGGCCTAAAGGAA+TGG | + | chr4_1:81839531-81839550 | Msa0577470:intron | 35.0% |
| ATACTAAAGTTCCTATGGGA+AGG | - | chr4_1:81839567-81839586 | None:intergenic | 35.0% | |
| ! | AATATGGTAACTGTGTCACT+TGG | + | chr4_1:81839702-81839721 | Msa0577470:CDS | 35.0% |
| ! | AAAACCTGAAGGGCATAAAA+TGG | - | chr4_1:81839745-81839764 | None:intergenic | 35.0% |
| CTACTGAGTTAAAACCTGAA+GGG | - | chr4_1:81839755-81839774 | None:intergenic | 35.0% | |
| ACTACTGAGTTAAAACCTGA+AGG | - | chr4_1:81839756-81839775 | None:intergenic | 35.0% | |
| !!! | TTCAGGTTTTAACTCAGTAG+TGG | + | chr4_1:81839755-81839774 | Msa0577470:CDS | 35.0% |
| !!! | TCAGGTTTTAACTCAGTAGT+GGG | + | chr4_1:81839756-81839775 | Msa0577470:CDS | 35.0% |
| ATAGCAAAATGTCTCTGTTG+AGG | - | chr4_1:81839911-81839930 | None:intergenic | 35.0% | |
| ! | ATGTGTAAACATTGATTGCG+TGG | + | chr4_1:81839934-81839953 | Msa0577470:intron | 35.0% |
| !!! | TTGATTGCGTGGTTTTGTAT+AGG | + | chr4_1:81839945-81839964 | Msa0577470:intron | 35.0% |
| ! | TTTTGTATAGGCCAATTTGC+AGG | + | chr4_1:81839957-81839976 | Msa0577470:intron | 35.0% |
| TGGATTGAAAGGAAAGAGAT+TGG | + | chr4_1:81840102-81840121 | Msa0577470:CDS | 35.0% | |
| GGATTGAAAGGAAAGAGATT+GGG | + | chr4_1:81840103-81840122 | Msa0577470:CDS | 35.0% | |
| GTAAGACTATACTACGAGTT+TGG | + | chr4_1:81840130-81840149 | Msa0577470:CDS | 35.0% | |
| ! | CTCTTTCAGGTACTTATTCA+AGG | - | chr4_1:81840407-81840426 | None:intergenic | 35.0% |
| ! | CTCTTTCAGGTACTTATTCA+AGG | - | chr4_1:81840407-81840426 | None:intergenic | 35.0% |
| ! | CTCTTTCAGGTACTTATTCA+AGG | - | chr4_1:81840407-81840426 | None:intergenic | 35.0% |
| !! | TTTTGGGTGTTTCTTGTTGA+AGG | - | chr4_1:81840794-81840813 | None:intergenic | 35.0% |
| CAACAAGAAACACCCAAAAT+TGG | + | chr4_1:81840795-81840814 | Msa0577470:CDS | 35.0% | |
| ! | GCTTTTGTAACAAATTGGCA+TGG | - | chr4_1:81840923-81840942 | None:intergenic | 35.0% |
| TTGTAGGAGAAACTTGAGTA+TGG | + | chr4_1:81840996-81841015 | Msa0577470:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | + | chr4_1:81841038-81841057 | Msa0577470:CDS | 35.0% | |
| ! | ATGCTGTAGTAACACCTTTT+TGG | + | chr4_1:81841144-81841163 | Msa0577470:CDS | 35.0% |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | + | chr4_1:81841248-81841267 | Msa0577470:CDS | 35.0% |
| !! | TTTGCTTTGGAGGTTTGAAA+GGG | + | chr4_1:81841249-81841268 | Msa0577470:CDS | 35.0% |
| ACTTATAACTTTCGAAAGGG+AGG | - | chr4_1:81841338-81841357 | None:intergenic | 35.0% | |
| CATATTCATGGAAATTGGAG+AGG | - | chr4_1:81841373-81841392 | None:intergenic | 35.0% | |
| TTCAGACCAATCAACAATGT+TGG | - | chr4_1:81841488-81841507 | None:intergenic | 35.0% | |
| !! | TGATTGGTCTGAAAATCTAC+GGG | + | chr4_1:81841495-81841514 | Msa0577470:three_prime_UTR | 35.0% |
| ! | GACAATGGATTCTACATGTA+TGG | + | chr4_1:81841517-81841536 | Msa0577470:three_prime_UTR | 35.0% |
| TCACGTTATCTTAACTCACT+AGG | + | chr4_1:81841633-81841652 | Msa0577470:three_prime_UTR | 35.0% | |
| ! | AAGGGAGTGTAACTAGAAGA+AGG | - | chr4_1:81838526-81838545 | None:intergenic | 40.0% |
| AAGCAGCAAGTTCTCTTTCA+AGG | + | chr4_1:81838768-81838787 | Msa0577470:CDS | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | + | chr4_1:81838776-81838795 | Msa0577470:CDS | 40.0% | |
| ! | CAGGCGTTGTTAACAAGTTA+AGG | + | chr4_1:81838897-81838916 | Msa0577470:CDS | 40.0% |
| GAAAGCTGGGGCTATTATAT+TGG | + | chr4_1:81838919-81838938 | Msa0577470:CDS | 40.0% | |
| AAGCTGGGGCTATTATATTG+GGG | + | chr4_1:81838921-81838940 | Msa0577470:CDS | 40.0% | |
| GTAATATGACCACTCACTCA+GGG | - | chr4_1:81838954-81838973 | None:intergenic | 40.0% | |
| TGTAATATGACCACTCACTC+AGG | - | chr4_1:81838955-81838974 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCATATTAC+AGG | + | chr4_1:81838954-81838973 | Msa0577470:CDS | 40.0% | |
| ATCCCCACAAAACACATTCA+TGG | + | chr4_1:81839350-81839369 | Msa0577470:intron | 40.0% | |
| ! | TCGCCATGAATGTGTTTTGT+GGG | - | chr4_1:81839356-81839375 | None:intergenic | 40.0% |
| ! | TTCGCCATGAATGTGTTTTG+TGG | - | chr4_1:81839357-81839376 | None:intergenic | 40.0% |
| !! | TCCGCACAAGTGTTTGTTTT+AGG | - | chr4_1:81839396-81839415 | None:intergenic | 40.0% |
| TGCCAAAGGTCCTAATTACA+TGG | + | chr4_1:81839480-81839499 | Msa0577470:intron | 40.0% | |
| GTTTCATTATGCCTTCCCAT+AGG | + | chr4_1:81839553-81839572 | Msa0577470:intron | 40.0% | |
| AGGAATTCACACTTGTGCTT+CGG | + | chr4_1:81839608-81839627 | Msa0577470:intron | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | + | chr4_1:81839632-81839651 | Msa0577470:intron | 40.0% | |
| GTGCAGAATCCATACACATT+GGG | + | chr4_1:81839633-81839652 | Msa0577470:intron | 40.0% | |
| CAAGGTTTACCCAATGTGTA+TGG | - | chr4_1:81839645-81839664 | None:intergenic | 40.0% | |
| TACACATTGGGTAAACCTTG+TGG | + | chr4_1:81839645-81839664 | Msa0577470:CDS | 40.0% | |
| TCTGATACAGTCCTGCAAAT+TGG | - | chr4_1:81839971-81839990 | None:intergenic | 40.0% | |
| TATGTTCTTGAGACCATAGC+AGG | + | chr4_1:81839998-81840017 | Msa0577470:CDS | 40.0% | |
| GCATCAAAGTTCATCCCAAA+AGG | + | chr4_1:81840052-81840071 | Msa0577470:CDS | 40.0% | |
| TCAAAGTTCATCCCAAAAGG+TGG | + | chr4_1:81840055-81840074 | Msa0577470:CDS | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | - | chr4_1:81840069-81840088 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | - | chr4_1:81840070-81840089 | None:intergenic | 40.0% |
| GTTTGGAAATGACACCTTAC+TGG | + | chr4_1:81840147-81840166 | Msa0577470:CDS | 40.0% | |
| AGCTACACCTGAACACATTA+AGG | + | chr4_1:81840182-81840201 | Msa0577470:CDS | 40.0% | |
| GGACTTACCTTAATGTGTTC+AGG | - | chr4_1:81840192-81840211 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | + | chr4_1:81840286-81840305 | Msa0577470:intron | 40.0% | |
| GACACACACATAACTCTTTC+AGG | - | chr4_1:81840420-81840439 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | + | chr4_1:81840286-81840305 | Msa0577470:intron | 40.0% | |
| GACACACACATAACTCTTTC+AGG | - | chr4_1:81840420-81840439 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | + | chr4_1:81840286-81840305 | Msa0577470:intron | 40.0% | |
| GTGAAGCAACTAACTCTTTC+AGG | - | chr4_1:81840744-81840763 | None:intergenic | 40.0% | |
| GTGCAAGCTGAAAAGACAAA+TGG | + | chr4_1:81841032-81841051 | Msa0577470:CDS | 40.0% | |
| ATGACAAGATGGTCACAAGA+TGG | + | chr4_1:81841089-81841108 | Msa0577470:CDS | 40.0% | |
| TGACAAGATGGTCACAAGAT+GGG | + | chr4_1:81841090-81841109 | Msa0577470:CDS | 40.0% | |
| AATAGCAAGTACGTGGCTAA+AGG | - | chr4_1:81841171-81841190 | None:intergenic | 40.0% | |
| !! | TTTAGCCACGTACTTGCTAT+TGG | + | chr4_1:81841170-81841189 | Msa0577470:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4_1:81841211-81841230 | Msa0577470:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr4_1:81841212-81841231 | Msa0577470:CDS | 40.0% | |
| ! | TATGAAAAGGGTGTGCCATT+TGG | + | chr4_1:81841224-81841243 | Msa0577470:CDS | 40.0% |
| !! | GTGCCATTTGGAATTTGCTT+TGG | + | chr4_1:81841236-81841255 | Msa0577470:CDS | 40.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | - | chr4_1:81841242-81841261 | None:intergenic | 40.0% | |
| ! | CCATTTGGAATTTGCTTTGG+AGG | + | chr4_1:81841239-81841258 | Msa0577470:CDS | 40.0% |
| TATAACTTTCGAAAGGGAGG+TGG | - | chr4_1:81841335-81841354 | None:intergenic | 40.0% | |
| TCTGAAAATCTACGGGACAA+TGG | + | chr4_1:81841502-81841521 | Msa0577470:three_prime_UTR | 40.0% | |
| GTATGGTGAAGTTGTACTCA+TGG | + | chr4_1:81841534-81841553 | Msa0577470:three_prime_UTR | 40.0% | |
| !! | CGTAGTAATTTCAGGTTGAG+CGG | + | chr4_1:81841608-81841627 | Msa0577470:three_prime_UTR | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | + | chr4_1:81838554-81838573 | Msa0577470:CDS | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | - | chr4_1:81838567-81838586 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | + | chr4_1:81838568-81838587 | Msa0577470:CDS | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | + | chr4_1:81838680-81838699 | Msa0577470:CDS | 45.0% | |
| TCCAAAACCCGGTTCTCAAA+GGG | + | chr4_1:81838681-81838700 | Msa0577470:CDS | 45.0% | |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr4_1:81838722-81838741 | None:intergenic | 45.0% | |
| ATAGAGCTGACCAAGAGAGA+TGG | + | chr4_1:81838741-81838760 | Msa0577470:CDS | 45.0% | |
| TAGAGCTGACCAAGAGAGAT+GGG | + | chr4_1:81838742-81838761 | Msa0577470:CDS | 45.0% | |
| !!! | CTGCTTTTTCCCATCTCTCT+TGG | - | chr4_1:81838754-81838773 | None:intergenic | 45.0% |
| GATAAGCTAAACACCACTGC+AGG | + | chr4_1:81838836-81838855 | Msa0577470:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | + | chr4_1:81838862-81838881 | Msa0577470:CDS | 45.0% |
| TGGGGCTATTATATTGGGGA+AGG | + | chr4_1:81838925-81838944 | Msa0577470:CDS | 45.0% | |
| TTAACCGTAGCTGAGCTTGT+TGG | + | chr4_1:81839311-81839330 | Msa0577470:intron | 45.0% | |
| ! | TAACCGTAGCTGAGCTTGTT+GGG | + | chr4_1:81839312-81839331 | Msa0577470:intron | 45.0% |
| ! | CGCCATGAATGTGTTTTGTG+GGG | - | chr4_1:81839355-81839374 | None:intergenic | 45.0% |
| TTCCATAAGCTTCGGTCCAT+TGG | - | chr4_1:81839438-81839457 | None:intergenic | 45.0% | |
| GGCCATGTAATTAGGACCTT+TGG | - | chr4_1:81839485-81839504 | None:intergenic | 45.0% | |
| TGGTTGGAGGCCATGTAATT+AGG | - | chr4_1:81839493-81839512 | None:intergenic | 45.0% | |
| AAACCTTGTGGATCAAGCAG+TGG | + | chr4_1:81839657-81839676 | Msa0577470:CDS | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr4_1:81839717-81839736 | Msa0577470:CDS | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | - | chr4_1:81839736-81839755 | None:intergenic | 45.0% | |
| CTACTAGTTAGGCCAACTGT+TGG | - | chr4_1:81839789-81839808 | None:intergenic | 45.0% | |
| CTACACCTGCTCTACTAGTT+AGG | - | chr4_1:81839800-81839819 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | + | chr4_1:81839814-81839833 | Msa0577470:CDS | 45.0% | |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | - | chr4_1:81840014-81840033 | None:intergenic | 45.0% |
| GAAAGGAAAGAGATTGGGAG+TGG | + | chr4_1:81840108-81840127 | Msa0577470:CDS | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | + | chr4_1:81840756-81840775 | Msa0577470:CDS | 45.0% | |
| ! | ACTTCTGCCAAGCTTTTCAC+TGG | - | chr4_1:81840766-81840785 | None:intergenic | 45.0% |
| TGAGTATGGCCAAGATGTCA+TGG | + | chr4_1:81841010-81841029 | Msa0577470:CDS | 45.0% | |
| ACGTGGCTAAAGGACCAAAA+AGG | - | chr4_1:81841161-81841180 | None:intergenic | 45.0% | |
| AACCTCCAATAGCAAGTACG+TGG | - | chr4_1:81841178-81841197 | None:intergenic | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | + | chr4_1:81841182-81841201 | Msa0577470:CDS | 45.0% |
| ! | ACACCCTTTTCATATCCTGC+TGG | - | chr4_1:81841218-81841237 | None:intergenic | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGC+TGG | - | chr4_1:81838613-81838632 | None:intergenic | 50.0% |
| CCAAAACCCGGTTCTCAAAG+GGG | + | chr4_1:81838682-81838701 | Msa0577470:CDS | 50.0% | |
| ! | TCCAACACCCCTTTGAGAAC+CGG | - | chr4_1:81838692-81838711 | None:intergenic | 50.0% |
| CAATGCAAAAGAGCCTGCAG+TGG | - | chr4_1:81838852-81838871 | None:intergenic | 50.0% | |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | + | chr4_1:81838854-81838873 | Msa0577470:CDS | 50.0% |
| TTAACAACGCCTGCGTCTCT+TGG | - | chr4_1:81838890-81838909 | None:intergenic | 50.0% | |
| ATATGACCACTCACTCAGGG+TGG | - | chr4_1:81838951-81838970 | None:intergenic | 50.0% | |
| CTAATGGAGCTCCTAGTGCT+TGG | + | chr4_1:81838978-81838997 | Msa0577470:CDS | 50.0% | |
| !! | AACCGTAGCTGAGCTTGTTG+GGG | + | chr4_1:81839313-81839332 | Msa0577470:intron | 50.0% |
| TTCCCCAACAAGCTCAGCTA+CGG | - | chr4_1:81839318-81839337 | None:intergenic | 50.0% | |
| ! | GTTTTGTGGGGATCGAACTG+CGG | - | chr4_1:81839343-81839362 | None:intergenic | 50.0% |
| GTCCAATGGACCGAAGCTTA+TGG | + | chr4_1:81839433-81839452 | Msa0577470:intron | 50.0% | |
| !!! | TGTAGCTTTTGGGGTGCCAA+AGG | + | chr4_1:81839466-81839485 | Msa0577470:intron | 50.0% |
| GATCCACTGCTTGATCCACA+AGG | - | chr4_1:81839663-81839682 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTTATGCCCTTC+AGG | + | chr4_1:81839738-81839757 | Msa0577470:CDS | 50.0% |
| GTGGGCATCAAACCAACAGT+TGG | + | chr4_1:81839774-81839793 | Msa0577470:CDS | 50.0% | |
| ! | GTTGGCCTAACTAGTAGAGC+AGG | + | chr4_1:81839792-81839811 | Msa0577470:CDS | 50.0% |
| AGTTCCAATTAGCCCAAGGC+AGG | + | chr4_1:81839818-81839837 | Msa0577470:CDS | 50.0% | |
| CAGCTTGCACCATGACATCT+TGG | - | chr4_1:81841022-81841041 | None:intergenic | 50.0% | |
| !! | AGCCACGTACTTGCTATTGG+AGG | + | chr4_1:81841173-81841192 | Msa0577470:CDS | 50.0% |
| !! | CCCCTTTGAGAACCGGGTTT+TGG | - | chr4_1:81838685-81838704 | None:intergenic | 55.0% |
| ! | CCAACACCCCTTTGAGAACC+GGG | - | chr4_1:81838691-81838710 | None:intergenic | 55.0% |
| !! | GGTTCTCAAAGGGGTGTTGG+AGG | + | chr4_1:81838691-81838710 | Msa0577470:CDS | 55.0% |
| ! | TCCTAGTGCTTGGAGTGCCA+GGG | + | chr4_1:81838988-81839007 | Msa0577470:CDS | 55.0% |
| TACCTTTCCATGTCCACCCC+TGG | - | chr4_1:81839008-81839027 | None:intergenic | 55.0% | |
| !! | GTAGCTGAGCTTGTTGGGGA+AGG | + | chr4_1:81839317-81839336 | Msa0577470:intron | 55.0% |
| GTGTCCTGCCTTGGGCTAAT+TGG | - | chr4_1:81839825-81839844 | None:intergenic | 55.0% | |
| ACCCAACTGTGTCCTGCCTT+GGG | - | chr4_1:81839833-81839852 | None:intergenic | 55.0% | |
| TACCCAACTGTGTCCTGCCT+TGG | - | chr4_1:81839834-81839853 | None:intergenic | 55.0% | |
| ! | CCCGGTTCTCAAAGGGGTGT+TGG | + | chr4_1:81838688-81838707 | Msa0577470:CDS | 60.0% |
| ! | TCAGTGGTGCCAAGAGACGC+AGG | + | chr4_1:81838878-81838897 | Msa0577470:CDS | 60.0% |
| ! | CTCCTAGTGCTTGGAGTGCC+AGG | + | chr4_1:81838987-81839006 | Msa0577470:CDS | 60.0% |
| ! | CCTAGTGCTTGGAGTGCCAG+GGG | + | chr4_1:81838989-81839008 | Msa0577470:CDS | 60.0% |
| TGCCAGGGGTGGACATGGAA+AGG | + | chr4_1:81839003-81839022 | Msa0577470:CDS | 60.0% | |
| AGCCCAAGGCAGGACACAGT+TGG | + | chr4_1:81839828-81839847 | Msa0577470:CDS | 60.0% | |
| GCCCAAGGCAGGACACAGTT+GGG | + | chr4_1:81839829-81839848 | Msa0577470:CDS | 60.0% | |
| CCTGCTGGAACACTCACTCC+AGG | - | chr4_1:81841203-81841222 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | + | chr4_1:81841200-81841219 | Msa0577470:CDS | 60.0% | |
| GGAAGGCCACCCTGAGTGAG+TGG | + | chr4_1:81838942-81838961 | Msa0577470:CDS | 65.0% | |
| CCCCTGGCACTCCAAGCACT+AGG | - | chr4_1:81838992-81839011 | None:intergenic | 65.0% | |
| ! | AGTGCTTGGAGTGCCAGGGG+TGG | + | chr4_1:81838992-81839011 | Msa0577470:CDS | 65.0% |
| ! | TGGAGTGCCAGGGGTGGACA+TGG | + | chr4_1:81838998-81839017 | Msa0577470:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81838471 | 81841674 | 81838471 | ID=Msa0577470;Name=Msa0577470 |
| chr4_1 | mRNA | 81838471 | 81841674 | 81838471 | ID=Msa0577470-mRNA-1;Parent=Msa0577470;Name=Msa0577470-mRNA-1;_AED=0.42;_eAED=0.42;_QI=5|0.75|0.8|1|1|1|5|319|622 |
| chr4_1 | exon | 81838471 | 81839024 | 81838471 | ID=Msa0577470-mRNA-1:exon:29490;Parent=Msa0577470-mRNA-1 |
| chr4_1 | exon | 81839639 | 81839850 | 81839639 | ID=Msa0577470-mRNA-1:exon:29491;Parent=Msa0577470-mRNA-1 |
| chr4_1 | exon | 81839967 | 81840203 | 81839967 | ID=Msa0577470-mRNA-1:exon:29492;Parent=Msa0577470-mRNA-1 |
| chr4_1 | exon | 81840300 | 81840816 | 81840300 | ID=Msa0577470-mRNA-1:exon:29493;Parent=Msa0577470-mRNA-1 |
| chr4_1 | exon | 81841002 | 81841674 | 81841002 | ID=Msa0577470-mRNA-1:exon:29494;Parent=Msa0577470-mRNA-1 |
| chr4_1 | five_prime_UTR | 81838471 | 81838475 | 81838471 | ID=Msa0577470-mRNA-1:five_prime_utr;Parent=Msa0577470-mRNA-1 |
| chr4_1 | CDS | 81838476 | 81839024 | 81838476 | ID=Msa0577470-mRNA-1:cds;Parent=Msa0577470-mRNA-1 |
| chr4_1 | CDS | 81839639 | 81839850 | 81839639 | ID=Msa0577470-mRNA-1:cds;Parent=Msa0577470-mRNA-1 |
| chr4_1 | CDS | 81839967 | 81840203 | 81839967 | ID=Msa0577470-mRNA-1:cds;Parent=Msa0577470-mRNA-1 |
| chr4_1 | CDS | 81840300 | 81840816 | 81840300 | ID=Msa0577470-mRNA-1:cds;Parent=Msa0577470-mRNA-1 |
| chr4_1 | CDS | 81841002 | 81841355 | 81841002 | ID=Msa0577470-mRNA-1:cds;Parent=Msa0577470-mRNA-1 |
| chr4_1 | three_prime_UTR | 81841356 | 81841674 | 81841356 | ID=Msa0577470-mRNA-1:three_prime_utr;Parent=Msa0577470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
