Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577800 | XP_013446599.1 | 85.387 | 568 | 29 | 2 | 1 | 568 | 1 | 514 | 0.0 | 960 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577800 | sp|A0A1P8B760|AMI4G_ARATH | 50.551 | 544 | 201 | 13 | 27 | 565 | 30 | 510 | 2.38e-150 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577800 | A0A072TTV4 | 85.387 | 568 | 29 | 2 | 1 | 568 | 1 | 514 | 0.0 | 960 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563880 | Msa0577800 | 0.924719 | 4.834869e-90 | -8.615850e-47 |
| Msa0577470 | Msa0577800 | 0.988367 | 9.680737e-174 | -8.615850e-47 |
| Msa0577800 | Msa0587290 | 0.805050 | 1.609300e-49 | -8.615850e-47 |
| Msa0577800 | Msa1067910 | 0.800207 | 1.605701e-48 | -8.615850e-47 |
| Msa0577800 | Msa1306810 | 0.963049 | 1.305038e-121 | -8.615850e-47 |
| Msa0577800 | Msa1395580 | 0.809291 | 2.034296e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577800 | MtrunA17_Chr8g0377701 | 85.387 | 568 | 29 | 2 | 1 | 568 | 1 | 514 | 0.0 | 960 |
| Msa0577800 | MtrunA17_Chr8g0377691 | 81.866 | 568 | 48 | 3 | 1 | 568 | 1 | 513 | 0.0 | 907 |
| Msa0577800 | MtrunA17_Chr8g0377651 | 77.680 | 569 | 68 | 4 | 1 | 568 | 3 | 513 | 0.0 | 869 |
| Msa0577800 | MtrunA17_Chr8g0377641 | 75.704 | 568 | 78 | 4 | 1 | 567 | 1 | 509 | 0.0 | 855 |
| Msa0577800 | MtrunA17_Chr8g0377681 | 74.021 | 562 | 90 | 4 | 6 | 566 | 3 | 509 | 0.0 | 818 |
| Msa0577800 | MtrunA17_Chr4g0037521 | 54.659 | 558 | 184 | 12 | 16 | 563 | 9 | 507 | 0.0 | 545 |
| Msa0577800 | MtrunA17_Chr4g0037491 | 49.861 | 359 | 112 | 9 | 206 | 554 | 1 | 301 | 1.09e-104 | 317 |
| Msa0577800 | MtrunA17_Chr8g0377661 | 88.158 | 76 | 9 | 0 | 493 | 568 | 1 | 76 | 6.63e-39 | 137 |
| Msa0577800 | MtrunA17_Chr4g0037501 | 65.957 | 94 | 30 | 2 | 106 | 197 | 2 | 95 | 4.73e-30 | 113 |
| Msa0577800 | MtrunA17_Chr8g0385461 | 34.000 | 250 | 148 | 7 | 41 | 288 | 162 | 396 | 6.85e-30 | 124 |
| Msa0577800 | MtrunA17_Chr3g0097801 | 33.574 | 277 | 175 | 5 | 45 | 318 | 46 | 316 | 6.68e-28 | 117 |
| Msa0577800 | MtrunA17_Chr2g0279961 | 27.273 | 297 | 205 | 5 | 42 | 334 | 130 | 419 | 1.27e-21 | 99.0 |
| Msa0577800 | MtrunA17_Chr3g0130801 | 29.237 | 236 | 156 | 6 | 41 | 272 | 200 | 428 | 6.49e-15 | 77.8 |
| Msa0577800 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 141 | 258 | 63 | 176 | 2.08e-13 | 72.4 |
| Msa0577800 | MtrunA17_Chr8g0384851 | 26.740 | 273 | 187 | 7 | 22 | 288 | 117 | 382 | 5.09e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577800 | AT4G34880.1 | 47.698 | 543 | 172 | 9 | 27 | 565 | 30 | 464 | 2.14e-152 | 446 |
| Msa0577800 | AT4G34880.2 | 50.551 | 544 | 201 | 13 | 27 | 565 | 30 | 510 | 2.42e-151 | 444 |
| Msa0577800 | AT5G07360.1 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 2.30e-28 | 120 |
| Msa0577800 | AT5G07360.3 | 34.016 | 244 | 148 | 6 | 41 | 282 | 204 | 436 | 2.30e-28 | 120 |
| Msa0577800 | AT3G25660.1 | 34.237 | 295 | 177 | 9 | 53 | 341 | 57 | 340 | 1.48e-26 | 114 |
| Msa0577800 | AT5G07360.2 | 33.197 | 244 | 143 | 7 | 41 | 282 | 204 | 429 | 1.04e-24 | 108 |
| Msa0577800 | AT5G64440.1 | 26.950 | 282 | 190 | 6 | 42 | 318 | 131 | 401 | 3.65e-19 | 91.7 |
| Msa0577800 | AT1G08980.1 | 39.496 | 119 | 66 | 3 | 141 | 258 | 64 | 177 | 5.53e-14 | 74.7 |
Find 150 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACATACTCACCAATTT+TGG | 0.161024 | 4_1:+82101433 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-82103289 | Msa0577800:CDS |
| CCCCTTTGAGAACCGGGTTT+TGG | 0.237663 | 4_1:+82103397 | None:intergenic |
| GTGAAGCAACTAACTCTTTC+AGG | 0.258408 | 4_1:+82101500 | None:intergenic |
| GACACACACATAACTCTTTC+AGG | 0.260932 | 4_1:+82101662 | None:intergenic |
| CTGAAATTACTACGTCAAAT+TGG | 0.279005 | 4_1:+82100642 | None:intergenic |
| AGCTACACCTGAACACATTA+AGG | 0.284913 | 4_1:-82101897 | Msa0577800:intron |
| TACCCAACTGTGTCCTGCCT+TGG | 0.287369 | 4_1:+82102248 | None:intergenic |
| GAAAGCTGGGGCTATTATAT+TGG | 0.290528 | 4_1:-82103160 | Msa0577800:CDS |
| TCAGTCATATTCATGGAAAT+TGG | 0.291590 | 4_1:+82100866 | None:intergenic |
| GTTTGGAAATGACACCTTAC+TGG | 0.294526 | 4_1:-82101932 | Msa0577800:CDS |
| CTCCTAGTGCTTGGAGTGCC+AGG | 0.297565 | 4_1:-82103092 | Msa0577800:CDS |
| GGACTTACCTTAATGTGTTC+AGG | 0.300442 | 4_1:+82101890 | None:intergenic |
| GTGTCCTGCCTTGGGCTAAT+TGG | 0.303506 | 4_1:+82102257 | None:intergenic |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+82102012 | None:intergenic |
| CAATTTGACGTAGTAATTTC+AGG | 0.308301 | 4_1:-82100641 | Msa0577800:three_prime_UTR |
| AATATCAGTAGCAGCAAATA+TGG | 0.311054 | 4_1:-82102393 | Msa0577800:CDS |
| TTGATGTTAACTGCTTTCTT+TGG | 0.312414 | 4_1:+82103457 | None:intergenic |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:+82103276 | None:intergenic |
| CAACAAGAAACACCCAAAAT+TGG | 0.320154 | 4_1:-82101446 | Msa0577800:intron |
| AAAACCTGAAGGGCATAAAA+TGG | 0.325616 | 4_1:+82102337 | None:intergenic |
| AAGCAGCAAGTTCTCTTTCA+AGG | 0.348616 | 4_1:-82103311 | Msa0577800:CDS |
| AGTCTAAATTATAACATTGT+TGG | 0.349517 | 4_1:-82100785 | Msa0577800:three_prime_UTR |
| TCCAACACCCCTTTGAGAAC+CGG | 0.350483 | 4_1:+82103390 | None:intergenic |
| TGTGTACTTTCTTCAAAATC+AGG | 0.352651 | 4_1:-82101639 | Msa0577800:CDS |
| GTGCCATTTGGAATTTGCTT+TGG | 0.364629 | 4_1:-82101005 | Msa0577800:CDS |
| TGAGTGAGTGGTCATATTAC+AGG | 0.365318 | 4_1:-82103125 | Msa0577800:CDS |
| TTTAGCCACGTACTTGCTAT+TGG | 0.366366 | 4_1:-82101071 | Msa0577800:CDS |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 4_1:+82103360 | None:intergenic |
| AAAGCTGGGGCTATTATATT+GGG | 0.377072 | 4_1:-82103159 | Msa0577800:CDS |
| CAGCTTGCACCATGACATCT+TGG | 0.377208 | 4_1:+82101222 | None:intergenic |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:+82102111 | None:intergenic |
| TGGATTGAAAGGAAAGAGAT+TGG | 0.383085 | 4_1:-82101977 | Msa0577800:CDS |
| AGAAGAATCAGTCATATTCA+TGG | 0.384908 | 4_1:+82100859 | None:intergenic |
| GTAAGACTATACTACGAGTT+TGG | 0.390772 | 4_1:-82101949 | Msa0577800:CDS |
| TATGAAAAGGGTGTGCCATT+TGG | 0.392987 | 4_1:-82101017 | Msa0577800:CDS |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:+82101513 | None:intergenic |
| CTCTTTCAGGTACTTATTCA+AGG | 0.395530 | 4_1:+82101675 | None:intergenic |
| CAAGGTTTACCCAATGTGTA+TGG | 0.395569 | 4_1:+82102437 | None:intergenic |
| CAGGCGTTGTTAACAAGTTA+AGG | 0.399616 | 4_1:-82103182 | Msa0577800:CDS |
| GTTGTTGTTGATAGCATAGA+AGG | 0.400557 | 4_1:+82103537 | None:intergenic |
| CCATTTGGAATTTGCTTTGG+AGG | 0.404999 | 4_1:-82101002 | Msa0577800:CDS |
| CTTTCAACTTTGAAGACTCA+TGG | 0.405050 | 4_1:-82103622 | None:intergenic |
| TGGTCATATTACAGGTCTAA+TGG | 0.405157 | 4_1:-82103117 | Msa0577800:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.409552 | 4_1:-82101059 | Msa0577800:CDS |
| ACCCAACTGTGTCCTGCCTT+GGG | 0.411284 | 4_1:+82102249 | None:intergenic |
| GCTTTCTTTGGAAGGCAAGC+TGG | 0.416703 | 4_1:+82103469 | None:intergenic |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+82100963 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:-82103265 | Msa0577800:CDS |
| GCTCAATTTCTAAAGAAAGA+TGG | 0.421932 | 4_1:-82101997 | Msa0577800:CDS |
| CTACACCTGCTCTACTAGTT+AGG | 0.423846 | 4_1:+82102282 | None:intergenic |
| GTTAACAAGTTAAGGAAAGC+TGG | 0.430240 | 4_1:-82103174 | Msa0577800:CDS |
| TTAACAACGCCTGCGTCTCT+TGG | 0.430259 | 4_1:+82103192 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.432727 | 4_1:-82101203 | Msa0577800:CDS |
| ACGTGGCTAAAGGACCAAAA+AGG | 0.434770 | 4_1:+82101083 | None:intergenic |
| TTATCACCAACATTGTTGAT+TGG | 0.441192 | 4_1:-82100762 | Msa0577800:three_prime_UTR |
| TTGTAGGAGAAACTTGAGTA+TGG | 0.448530 | 4_1:-82101245 | Msa0577800:intron |
| CCAACACCCCTTTGAGAACC+GGG | 0.448929 | 4_1:+82103391 | None:intergenic |
| GACAATGGATTCTACATGTA+TGG | 0.451823 | 4_1:-82100724 | Msa0577800:three_prime_UTR |
| TCCAAAACCCGGTTCTCAAA+GGG | 0.455269 | 4_1:-82103398 | Msa0577800:CDS |
| TTGATTGGTCTGAAAATCTA+CGG | 0.472177 | 4_1:-82100747 | Msa0577800:three_prime_UTR |
| CTAAAGAAAGATGGATTGAA+AGG | 0.478881 | 4_1:-82101988 | Msa0577800:CDS |
| ATTTGCTTTGGAGGTTTGAA+AGG | 0.485064 | 4_1:-82100993 | Msa0577800:CDS |
| TATGTTCTTGAGACCATAGC+AGG | 0.488452 | 4_1:-82102081 | Msa0577800:CDS |
| TCCTAGTGCTTGGAGTGCCA+GGG | 0.489006 | 4_1:-82103091 | Msa0577800:CDS |
| TTAACAAGTTAAGGAAAGCT+GGG | 0.496274 | 4_1:-82103173 | Msa0577800:CDS |
| GCCCAAGGCAGGACACAGTT+GGG | 0.500606 | 4_1:-82102250 | Msa0577800:intron |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4_1:-82101030 | Msa0577800:CDS |
| TTCAGACCAATCAACAATGT+TGG | 0.504254 | 4_1:+82100756 | None:intergenic |
| AAGGGAGTGTAACTAGAAGA+AGG | 0.505383 | 4_1:+82103556 | None:intergenic |
| CCCGGTTCTCAAAGGGGTGT+TGG | 0.507779 | 4_1:-82103391 | Msa0577800:CDS |
| CAAACTTATAACTTTCGAAA+GGG | 0.508484 | 4_1:+82100903 | None:intergenic |
| TAGAGCTGACCAAGAGAGAT+GGG | 0.509333 | 4_1:-82103337 | Msa0577800:CDS |
| TGTAATATGACCACTCACTC+AGG | 0.511423 | 4_1:+82103127 | None:intergenic |
| GTGCAAGCTGAAAAGACAAA+TGG | 0.511979 | 4_1:-82101209 | Msa0577800:CDS |
| GGATTGAAAGGAAAGAGATT+GGG | 0.512951 | 4_1:-82101976 | Msa0577800:CDS |
| AGCCACGTACTTGCTATTGG+AGG | 0.513545 | 4_1:-82101068 | Msa0577800:CDS |
| GCATCAAAGTTCATCCCAAA+AGG | 0.514495 | 4_1:-82102027 | Msa0577800:CDS |
| ATCCAAAACCCGGTTCTCAA+AGG | 0.516133 | 4_1:-82103399 | Msa0577800:CDS |
| TGGAGTGCCAGGGGTGGACA+TGG | 0.517155 | 4_1:-82103081 | Msa0577800:CDS |
| AATAGCAAGTACGTGGCTAA+AGG | 0.517260 | 4_1:+82101073 | None:intergenic |
| TGTTAACTGCTTTCTTTGGA+AGG | 0.518372 | 4_1:+82103461 | None:intergenic |
| CTAATGGAGCTCCTAGTGCT+TGG | 0.519023 | 4_1:-82103101 | Msa0577800:CDS |
| TACCTTTCCATGTCCACCCC+TGG | 0.520730 | 4_1:+82103074 | None:intergenic |
| TATAACTTTCGAAAGGGAGG+TGG | 0.521580 | 4_1:+82100909 | None:intergenic |
| GTGCAGAATCCATACACATT+GGG | 0.521797 | 4_1:-82102446 | Msa0577800:intron |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:-82103303 | Msa0577800:CDS |
| AGTGCTTGGAGTGCCAGGGG+TGG | 0.526595 | 4_1:-82103087 | Msa0577800:CDS |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.531370 | 4_1:+82102068 | None:intergenic |
| TGCCAGGGGTGGACATGGAA+AGG | 0.536044 | 4_1:-82103076 | Msa0577800:intron |
| CCTCCAAAGCAAATTCCAAA+TGG | 0.540531 | 4_1:+82101002 | None:intergenic |
| CTACTAGTTAGGCCAACTGT+TGG | 0.540942 | 4_1:+82102293 | None:intergenic |
| AGCCCAAGGCAGGACACAGT+TGG | 0.542690 | 4_1:-82102251 | Msa0577800:CDS |
| CTAGAAGAAGGATTATAGAG+AGG | 0.543663 | 4_1:+82103568 | None:intergenic |
| CCTAGTGCTTGGAGTGCCAG+GGG | 0.544299 | 4_1:-82103090 | Msa0577800:CDS |
| ATGACAAGATGGTCACAAGA+TGG | 0.546422 | 4_1:-82101152 | Msa0577800:CDS |
| TGCTTCACCAGTGAAAAGCT+TGG | 0.546928 | 4_1:-82101485 | Msa0577800:CDS |
| TCAAACTTATAACTTTCGAA+AGG | 0.548021 | 4_1:+82100902 | None:intergenic |
| TTGTTGTTGATAGCATAGAA+GGG | 0.551701 | 4_1:+82103538 | None:intergenic |
| GGCTAGTGGATTCTCAATCA+AGG | 0.555061 | 4_1:-82103511 | Msa0577800:CDS |
| GGTTCTCAAAGGGGTGTTGG+AGG | 0.557265 | 4_1:-82103388 | Msa0577800:CDS |
| AGTTCCAATTAGCCCAAGGC+AGG | 0.559502 | 4_1:-82102261 | Msa0577800:CDS |
| TCACGTTATCTTAACTCACT+AGG | 0.563298 | 4_1:-82100608 | Msa0577800:three_prime_UTR |
| CGTAGTAATTTCAGGTTGAG+CGG | 0.566097 | 4_1:-82100633 | Msa0577800:three_prime_UTR |
| TCAACAACAACCTTGGCTAG+TGG | 0.566924 | 4_1:-82103525 | Msa0577800:CDS |
| TTTGCTTTGGAGGTTTGAAA+GGG | 0.567329 | 4_1:-82100992 | Msa0577800:CDS |
| TGATTGGTCTGAAAATCTAC+GGG | 0.570172 | 4_1:-82100746 | Msa0577800:three_prime_UTR |
| CCCCTGGCACTCCAAGCACT+AGG | 0.572355 | 4_1:+82103090 | None:intergenic |
| GATTGAGAATCCACTAGCCA+AGG | 0.574276 | 4_1:+82103515 | None:intergenic |
| GATAAGCTAAACACCACTGC+AGG | 0.575011 | 4_1:-82103243 | Msa0577800:CDS |
| GAAAGGAAAGAGATTGGGAG+TGG | 0.578868 | 4_1:-82101971 | Msa0577800:CDS |
| TGACAAGATGGTCACAAGAT+GGG | 0.579154 | 4_1:-82101151 | Msa0577800:CDS |
| GTATGGTGAAGTTGTACTCA+TGG | 0.581463 | 4_1:-82100707 | Msa0577800:three_prime_UTR |
| ATAGAGCTGACCAAGAGAGA+TGG | 0.582777 | 4_1:-82103338 | Msa0577800:CDS |
| GTTGGCCTAACTAGTAGAGC+AGG | 0.585664 | 4_1:-82102287 | Msa0577800:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:-82101163 | Msa0577800:CDS |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4_1:+82101041 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4_1:-82101029 | Msa0577800:CDS |
| TATGCTATCAACAACAACCT+TGG | 0.596156 | 4_1:-82103532 | Msa0577800:CDS |
| TCAGTGGTGCCAAGAGACGC+AGG | 0.598008 | 4_1:-82103201 | Msa0577800:CDS |
| ACTTATAACTTTCGAAAGGG+AGG | 0.598476 | 4_1:+82100906 | None:intergenic |
| TGTGCAGAATCCATACACAT+TGG | 0.601083 | 4_1:-82102447 | Msa0577800:intron |
| ACTACTGAGTTAAAACCTGA+AGG | 0.603248 | 4_1:+82102326 | None:intergenic |
| TACACATTGGGTAAACCTTG+TGG | 0.604950 | 4_1:-82102434 | Msa0577800:CDS |
| GGAAGGCCACCCTGAGTGAG+TGG | 0.605485 | 4_1:-82103137 | Msa0577800:CDS |
| TCTGAAAATCTACGGGACAA+TGG | 0.607126 | 4_1:-82100739 | Msa0577800:three_prime_UTR |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4_1:-82101041 | Msa0577800:CDS |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:-82101631 | Msa0577800:CDS |
| TTCTTCAAAATCAGGCGAAG+AGG | 0.612164 | 4_1:-82101793 | Msa0577800:intron |
| CTACTGAGTTAAAACCTGAA+GGG | 0.616814 | 4_1:+82102327 | None:intergenic |
| GTAATATGACCACTCACTCA+GGG | 0.623022 | 4_1:+82103128 | None:intergenic |
| TGGGGCTATTATATTGGGGA+AGG | 0.627339 | 4_1:-82103154 | Msa0577800:CDS |
| TGAGTATGGCCAAGATGTCA+TGG | 0.627762 | 4_1:-82101231 | Msa0577800:CDS |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:+82102346 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.628996 | 4_1:-82102305 | Msa0577800:CDS |
| CCAAAACCCGGTTCTCAAAG+GGG | 0.630408 | 4_1:-82103397 | Msa0577800:CDS |
| CATATTCATGGAAATTGGAG+AGG | 0.631640 | 4_1:+82100871 | None:intergenic |
| AATATGGTAACTGTGTCACT+TGG | 0.633916 | 4_1:-82102377 | Msa0577800:CDS |
| GATCCACTGCTTGATCCACA+AGG | 0.638729 | 4_1:+82102419 | None:intergenic |
| GTGTAGTTCCAATTAGCCCA+AGG | 0.639092 | 4_1:-82102265 | Msa0577800:CDS |
| AAACCTTGTGGATCAAGCAG+TGG | 0.643969 | 4_1:-82102422 | Msa0577800:CDS |
| TAACAAGTTAAGGAAAGCTG+GGG | 0.646475 | 4_1:-82103172 | Msa0577800:CDS |
| ACAAATCAAAATCCAAAACC+CGG | 0.646481 | 4_1:-82103409 | Msa0577800:CDS |
| TCAAAGTTCATCCCAAAAGG+TGG | 0.647641 | 4_1:-82102024 | Msa0577800:CDS |
| ATATTCATGGAAATTGGAGA+GGG | 0.650938 | 4_1:+82100872 | None:intergenic |
| CAATGCAAAAGAGCCTGCAG+TGG | 0.652443 | 4_1:+82103230 | None:intergenic |
| AAGCTGGGGCTATTATATTG+GGG | 0.688618 | 4_1:-82103158 | Msa0577800:CDS |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-82102362 | Msa0577800:CDS |
| AACCTCCAATAGCAAGTACG+TGG | 0.718611 | 4_1:+82101066 | None:intergenic |
| ATATGACCACTCACTCAGGG+TGG | 0.758632 | 4_1:+82103131 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTTTATTTAAAAGTT+TGG | + | chr4_1:82101292-82101311 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTCAGTTTTATA+AGG | + | chr4_1:82101367-82101386 | None:intergenic | 10.0% |
| !!! | AATATTTTCTTACTTTTTTT+TGG | + | chr4_1:82101631-82101650 | None:intergenic | 10.0% |
| !!! | TACATAATAAATAATAGTTT+TGG | + | chr4_1:82102331-82102350 | None:intergenic | 10.0% |
| !! | AAACAAAATTTAAGAGTTAT+AGG | + | chr4_1:82101203-82101222 | None:intergenic | 15.0% |
| !!! | AAGTAAGAAAATATTTTTGA+AGG | - | chr4_1:82101636-82101655 | Msa0577800:CDS | 15.0% |
| !! | AAATTTAAGAGTTATAGGTT+TGG | + | chr4_1:82101198-82101217 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTAGTTAAGTGA+TGG | - | chr4_1:82101308-82101327 | Msa0577800:intron | 20.0% |
| !! | TCACTAATAGTAATACTTAA+TGG | - | chr4_1:82101391-82101410 | Msa0577800:intron | 20.0% |
| !! | CACTAATAGTAATACTTAAT+GGG | - | chr4_1:82101392-82101411 | Msa0577800:intron | 20.0% |
| !!! | AAATATTATGTGTAGCTTTT+GGG | - | chr4_1:82101574-82101593 | Msa0577800:CDS | 20.0% |
| !!! | TTTTCTTACTTTTTTTTGGT+TGG | + | chr4_1:82101627-82101646 | None:intergenic | 20.0% |
| !!! | TCTTAAACTTAATTTTCTAG+CGG | + | chr4_1:82103367-82103386 | None:intergenic | 20.0% |
| !! | AGTCTAAATTATAACATTGT+TGG | - | chr4_1:82103412-82103431 | Msa0577800:CDS | 20.0% |
| !!! | TTTGGATTTTGATTTGTTTG+AGG | + | chr4_1:82100785-82100804 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | + | chr4_1:82100924-82100943 | None:intergenic | 25.0% |
| ! | ATATTAGATTCTTAACAGCT+AGG | + | chr4_1:82101251-82101270 | None:intergenic | 25.0% |
| ! | CATAATATTTCCATAAGCTT+CGG | + | chr4_1:82101564-82101583 | None:intergenic | 25.0% |
| !! | GAAATATTATGTGTAGCTTT+TGG | - | chr4_1:82101573-82101592 | Msa0577800:CDS | 25.0% |
| !! | AATATTATGTGTAGCTTTTG+GGG | - | chr4_1:82101575-82101594 | Msa0577800:CDS | 25.0% |
| !!! | AAATATTTTTGAAGGCCTAA+AGG | - | chr4_1:82101644-82101663 | Msa0577800:CDS | 25.0% |
| ! | ATTCATACTAAAGTTCCTAT+GGG | + | chr4_1:82101689-82101708 | None:intergenic | 25.0% |
| !! | AATGATGATTCTAGAAAATG+AGG | - | chr4_1:82101706-82101725 | Msa0577800:CDS | 25.0% |
| ! | TTCACATAAAGAAAACGTAT+AGG | + | chr4_1:82101977-82101996 | None:intergenic | 25.0% |
| !!! | CTTAAAAGTTTTATCCAGTA+AGG | + | chr4_1:82102282-82102301 | None:intergenic | 25.0% |
| !! | TATACATACTCACCAATTTT+GGG | + | chr4_1:82102766-82102785 | None:intergenic | 25.0% |
| !! | TTATACATACTCACCAATTT+TGG | + | chr4_1:82102767-82102786 | None:intergenic | 25.0% |
| !! | GAAATGCTTTTGTAACAAAT+TGG | + | chr4_1:82102884-82102903 | None:intergenic | 25.0% |
| ! | AACTGTTGTATAAACATTGT+AGG | - | chr4_1:82102936-82102955 | Msa0577800:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | - | chr4_1:82103034-82103053 | Msa0577800:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:82103237-82103256 | None:intergenic | 25.0% |
| ! | CAAACTTATAACTTTCGAAA+GGG | + | chr4_1:82103297-82103316 | None:intergenic | 25.0% |
| ! | TCAAACTTATAACTTTCGAA+AGG | + | chr4_1:82103298-82103317 | None:intergenic | 25.0% |
| !! | TTGTTGTTGATAGCATAGAA+GGG | + | chr4_1:82100662-82100681 | None:intergenic | 30.0% |
| TTGATGTTAACTGCTTTCTT+TGG | + | chr4_1:82100743-82100762 | None:intergenic | 30.0% | |
| ACAAATCAAAATCCAAAACC+CGG | - | chr4_1:82100788-82100807 | Msa0577800:three_prime_UTR | 30.0% | |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:82100914-82100933 | Msa0577800:CDS | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | - | chr4_1:82100932-82100951 | Msa0577800:CDS | 30.0% | |
| TTAACAAGTTAAGGAAAGCT+GGG | - | chr4_1:82101024-82101043 | Msa0577800:CDS | 30.0% | |
| ! | CTTCTTACTTTATTTGACCA+TGG | - | chr4_1:82101158-82101177 | Msa0577800:CDS | 30.0% |
| ! | TTAGTTAAGTGATGGAGTAT+AGG | - | chr4_1:82101316-82101335 | Msa0577800:intron | 30.0% |
| !!! | TCTTACTTTTTTTTGGTTGG+AGG | + | chr4_1:82101624-82101643 | None:intergenic | 30.0% |
| CATAATGAAACCATTCCTTT+AGG | + | chr4_1:82101662-82101681 | None:intergenic | 30.0% | |
| CATTCATACTAAAGTTCCTA+TGG | + | chr4_1:82101690-82101709 | None:intergenic | 30.0% | |
| AATATCAGTAGCAGCAAATA+TGG | - | chr4_1:82101804-82101823 | Msa0577800:intron | 30.0% | |
| ! | GCTCAATTTCTAAAGAAAGA+TGG | - | chr4_1:82102200-82102219 | Msa0577800:intron | 30.0% |
| !! | CTAAAGAAAGATGGATTGAA+AGG | - | chr4_1:82102209-82102228 | Msa0577800:intron | 30.0% |
| TGTGTACTTTCTTCAAAATC+AGG | - | chr4_1:82102396-82102415 | Msa0577800:CDS | 30.0% | |
| TGTGTACTTTCTTCAAAATC+AGG | - | chr4_1:82102396-82102415 | Msa0577800:CDS | 30.0% | |
| ATATTCATGGAAATTGGAGA+GGG | + | chr4_1:82103328-82103347 | None:intergenic | 30.0% | |
| TCAGTCATATTCATGGAAAT+TGG | + | chr4_1:82103334-82103353 | None:intergenic | 30.0% | |
| AGAAGAATCAGTCATATTCA+TGG | + | chr4_1:82103341-82103360 | None:intergenic | 30.0% | |
| TTATCACCAACATTGTTGAT+TGG | - | chr4_1:82103435-82103454 | Msa0577800:CDS | 30.0% | |
| !! | TTGATTGGTCTGAAAATCTA+CGG | - | chr4_1:82103450-82103469 | Msa0577800:CDS | 30.0% |
| CTGAAATTACTACGTCAAAT+TGG | + | chr4_1:82103558-82103577 | None:intergenic | 30.0% | |
| CAATTTGACGTAGTAATTTC+AGG | - | chr4_1:82103556-82103575 | Msa0577800:CDS | 30.0% | |
| CTAGAAGAAGGATTATAGAG+AGG | + | chr4_1:82100632-82100651 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTGATAGCATAGA+AGG | + | chr4_1:82100663-82100682 | None:intergenic | 35.0% |
| TATGCTATCAACAACAACCT+TGG | - | chr4_1:82100665-82100684 | Msa0577800:three_prime_UTR | 35.0% | |
| TGTTAACTGCTTTCTTTGGA+AGG | + | chr4_1:82100739-82100758 | None:intergenic | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:82100908-82100927 | Msa0577800:CDS | 35.0% |
| GTTAACAAGTTAAGGAAAGC+TGG | - | chr4_1:82101023-82101042 | Msa0577800:CDS | 35.0% | |
| TAACAAGTTAAGGAAAGCTG+GGG | - | chr4_1:82101025-82101044 | Msa0577800:CDS | 35.0% | |
| AAAGCTGGGGCTATTATATT+GGG | - | chr4_1:82101038-82101057 | Msa0577800:CDS | 35.0% | |
| TGGTCATATTACAGGTCTAA+TGG | - | chr4_1:82101080-82101099 | Msa0577800:CDS | 35.0% | |
| TGGATTACAAAGTAAGACCA+TGG | + | chr4_1:82101178-82101197 | None:intergenic | 35.0% | |
| ! | TTAAGTGATGGAGTATAGGT+TGG | - | chr4_1:82101320-82101339 | Msa0577800:intron | 35.0% |
| !! | GGACTTTTTGATAGTTTACG+AGG | - | chr4_1:82101341-82101360 | Msa0577800:intron | 35.0% |
| ACCTAAAACAAACACTTGTG+CGG | - | chr4_1:82101510-82101529 | Msa0577800:CDS | 35.0% | |
| TAGTCTCATTATCAGTCCAA+TGG | - | chr4_1:82101537-82101556 | Msa0577800:CDS | 35.0% | |
| !! | TTTTTGAAGGCCTAAAGGAA+TGG | - | chr4_1:82101649-82101668 | Msa0577800:CDS | 35.0% |
| ATACTAAAGTTCCTATGGGA+AGG | + | chr4_1:82101685-82101704 | None:intergenic | 35.0% | |
| ! | AATATGGTAACTGTGTCACT+TGG | - | chr4_1:82101820-82101839 | Msa0577800:intron | 35.0% |
| ! | AAAACCTGAAGGGCATAAAA+TGG | + | chr4_1:82101863-82101882 | None:intergenic | 35.0% |
| CTACTGAGTTAAAACCTGAA+GGG | + | chr4_1:82101873-82101892 | None:intergenic | 35.0% | |
| ACTACTGAGTTAAAACCTGA+AGG | + | chr4_1:82101874-82101893 | None:intergenic | 35.0% | |
| !!! | TTCAGGTTTTAACTCAGTAG+TGG | - | chr4_1:82101873-82101892 | Msa0577800:intron | 35.0% |
| !!! | TCAGGTTTTAACTCAGTAGT+GGG | - | chr4_1:82101874-82101893 | Msa0577800:intron | 35.0% |
| ATAGCAAAATGTCTCTGTTG+AGG | + | chr4_1:82102029-82102048 | None:intergenic | 35.0% | |
| ! | ATGTGTAAACATTGATTGCG+TGG | - | chr4_1:82102052-82102071 | Msa0577800:CDS | 35.0% |
| !!! | TTGATTGCGTGGTTTTGTAT+AGG | - | chr4_1:82102063-82102082 | Msa0577800:CDS | 35.0% |
| ! | TTTTGTATAGGCCAATTTGC+AGG | - | chr4_1:82102075-82102094 | Msa0577800:CDS | 35.0% |
| TGGATTGAAAGGAAAGAGAT+TGG | - | chr4_1:82102220-82102239 | Msa0577800:intron | 35.0% | |
| GGATTGAAAGGAAAGAGATT+GGG | - | chr4_1:82102221-82102240 | Msa0577800:intron | 35.0% | |
| GTAAGACTATACTACGAGTT+TGG | - | chr4_1:82102248-82102267 | Msa0577800:intron | 35.0% | |
| ! | CTCTTTCAGGTACTTATTCA+AGG | + | chr4_1:82102525-82102544 | None:intergenic | 35.0% |
| ! | CTCTTTCAGGTACTTATTCA+AGG | + | chr4_1:82102525-82102544 | None:intergenic | 35.0% |
| !! | TTTTGGGTGTTTCTTGTTGA+AGG | + | chr4_1:82102750-82102769 | None:intergenic | 35.0% |
| CAACAAGAAACACCCAAAAT+TGG | - | chr4_1:82102751-82102770 | Msa0577800:intron | 35.0% | |
| ! | GCTTTTGTAACAAATTGGCA+TGG | + | chr4_1:82102879-82102898 | None:intergenic | 35.0% |
| TTGTAGGAGAAACTTGAGTA+TGG | - | chr4_1:82102952-82102971 | Msa0577800:intron | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | - | chr4_1:82102994-82103013 | Msa0577800:intron | 35.0% | |
| ! | ATGCTGTAGTAACACCTTTT+TGG | - | chr4_1:82103100-82103119 | Msa0577800:CDS | 35.0% |
| !! | ATTTGCTTTGGAGGTTTGAA+AGG | - | chr4_1:82103204-82103223 | Msa0577800:CDS | 35.0% |
| !! | TTTGCTTTGGAGGTTTGAAA+GGG | - | chr4_1:82103205-82103224 | Msa0577800:CDS | 35.0% |
| ACTTATAACTTTCGAAAGGG+AGG | + | chr4_1:82103294-82103313 | None:intergenic | 35.0% | |
| CATATTCATGGAAATTGGAG+AGG | + | chr4_1:82103329-82103348 | None:intergenic | 35.0% | |
| TTCAGACCAATCAACAATGT+TGG | + | chr4_1:82103444-82103463 | None:intergenic | 35.0% | |
| !! | TGATTGGTCTGAAAATCTAC+GGG | - | chr4_1:82103451-82103470 | Msa0577800:CDS | 35.0% |
| ! | GACAATGGATTCTACATGTA+TGG | - | chr4_1:82103473-82103492 | Msa0577800:CDS | 35.0% |
| TCACGTTATCTTAACTCACT+AGG | - | chr4_1:82103589-82103608 | Msa0577800:CDS | 35.0% | |
| ! | AAGGGAGTGTAACTAGAAGA+AGG | + | chr4_1:82100644-82100663 | None:intergenic | 40.0% |
| AAGCAGCAAGTTCTCTTTCA+AGG | - | chr4_1:82100886-82100905 | Msa0577800:three_prime_UTR | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:82100894-82100913 | Msa0577800:exon | 40.0% | |
| ! | CAGGCGTTGTTAACAAGTTA+AGG | - | chr4_1:82101015-82101034 | Msa0577800:CDS | 40.0% |
| GAAAGCTGGGGCTATTATAT+TGG | - | chr4_1:82101037-82101056 | Msa0577800:CDS | 40.0% | |
| AAGCTGGGGCTATTATATTG+GGG | - | chr4_1:82101039-82101058 | Msa0577800:CDS | 40.0% | |
| GTAATATGACCACTCACTCA+GGG | + | chr4_1:82101072-82101091 | None:intergenic | 40.0% | |
| TGTAATATGACCACTCACTC+AGG | + | chr4_1:82101073-82101092 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCATATTAC+AGG | - | chr4_1:82101072-82101091 | Msa0577800:CDS | 40.0% | |
| ATCCCCACAAAACACATTCA+TGG | - | chr4_1:82101468-82101487 | Msa0577800:CDS | 40.0% | |
| ! | TCGCCATGAATGTGTTTTGT+GGG | + | chr4_1:82101474-82101493 | None:intergenic | 40.0% |
| ! | TTCGCCATGAATGTGTTTTG+TGG | + | chr4_1:82101475-82101494 | None:intergenic | 40.0% |
| !! | TCCGCACAAGTGTTTGTTTT+AGG | + | chr4_1:82101514-82101533 | None:intergenic | 40.0% |
| TGCCAAAGGTCCTAATTACA+TGG | - | chr4_1:82101598-82101617 | Msa0577800:CDS | 40.0% | |
| GTTTCATTATGCCTTCCCAT+AGG | - | chr4_1:82101671-82101690 | Msa0577800:CDS | 40.0% | |
| AGGAATTCACACTTGTGCTT+CGG | - | chr4_1:82101726-82101745 | Msa0577800:CDS | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:82101750-82101769 | Msa0577800:CDS | 40.0% | |
| GTGCAGAATCCATACACATT+GGG | - | chr4_1:82101751-82101770 | Msa0577800:CDS | 40.0% | |
| CAAGGTTTACCCAATGTGTA+TGG | + | chr4_1:82101763-82101782 | None:intergenic | 40.0% | |
| TACACATTGGGTAAACCTTG+TGG | - | chr4_1:82101763-82101782 | Msa0577800:CDS | 40.0% | |
| TCTGATACAGTCCTGCAAAT+TGG | + | chr4_1:82102089-82102108 | None:intergenic | 40.0% | |
| TATGTTCTTGAGACCATAGC+AGG | - | chr4_1:82102116-82102135 | Msa0577800:intron | 40.0% | |
| GCATCAAAGTTCATCCCAAA+AGG | - | chr4_1:82102170-82102189 | Msa0577800:intron | 40.0% | |
| TCAAAGTTCATCCCAAAAGG+TGG | - | chr4_1:82102173-82102192 | Msa0577800:intron | 40.0% | |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:82102187-82102206 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:82102188-82102207 | None:intergenic | 40.0% |
| GTTTGGAAATGACACCTTAC+TGG | - | chr4_1:82102265-82102284 | Msa0577800:CDS | 40.0% | |
| AGCTACACCTGAACACATTA+AGG | - | chr4_1:82102300-82102319 | Msa0577800:CDS | 40.0% | |
| GGACTTACCTTAATGTGTTC+AGG | + | chr4_1:82102310-82102329 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | - | chr4_1:82102404-82102423 | Msa0577800:CDS | 40.0% | |
| GACACACACATAACTCTTTC+AGG | + | chr4_1:82102538-82102557 | None:intergenic | 40.0% | |
| TTCTTCAAAATCAGGCGAAG+AGG | - | chr4_1:82102404-82102423 | Msa0577800:CDS | 40.0% | |
| GTGAAGCAACTAACTCTTTC+AGG | + | chr4_1:82102700-82102719 | None:intergenic | 40.0% | |
| GTGCAAGCTGAAAAGACAAA+TGG | - | chr4_1:82102988-82103007 | Msa0577800:intron | 40.0% | |
| ATGACAAGATGGTCACAAGA+TGG | - | chr4_1:82103045-82103064 | Msa0577800:intron | 40.0% | |
| TGACAAGATGGTCACAAGAT+GGG | - | chr4_1:82103046-82103065 | Msa0577800:intron | 40.0% | |
| AATAGCAAGTACGTGGCTAA+AGG | + | chr4_1:82103127-82103146 | None:intergenic | 40.0% | |
| !! | TTTAGCCACGTACTTGCTAT+TGG | - | chr4_1:82103126-82103145 | Msa0577800:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:82103167-82103186 | Msa0577800:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:82103168-82103187 | Msa0577800:CDS | 40.0% | |
| ! | TATGAAAAGGGTGTGCCATT+TGG | - | chr4_1:82103180-82103199 | Msa0577800:CDS | 40.0% |
| !! | GTGCCATTTGGAATTTGCTT+TGG | - | chr4_1:82103192-82103211 | Msa0577800:CDS | 40.0% |
| CCTCCAAAGCAAATTCCAAA+TGG | + | chr4_1:82103198-82103217 | None:intergenic | 40.0% | |
| ! | CCATTTGGAATTTGCTTTGG+AGG | - | chr4_1:82103195-82103214 | Msa0577800:CDS | 40.0% |
| TATAACTTTCGAAAGGGAGG+TGG | + | chr4_1:82103291-82103310 | None:intergenic | 40.0% | |
| TCTGAAAATCTACGGGACAA+TGG | - | chr4_1:82103458-82103477 | Msa0577800:CDS | 40.0% | |
| GTATGGTGAAGTTGTACTCA+TGG | - | chr4_1:82103490-82103509 | Msa0577800:CDS | 40.0% | |
| !! | CGTAGTAATTTCAGGTTGAG+CGG | - | chr4_1:82103564-82103583 | Msa0577800:CDS | 40.0% |
| TCAACAACAACCTTGGCTAG+TGG | - | chr4_1:82100672-82100691 | Msa0577800:three_prime_UTR | 45.0% | |
| GATTGAGAATCCACTAGCCA+AGG | + | chr4_1:82100685-82100704 | None:intergenic | 45.0% | |
| !! | GGCTAGTGGATTCTCAATCA+AGG | - | chr4_1:82100686-82100705 | Msa0577800:three_prime_UTR | 45.0% |
| ATCCAAAACCCGGTTCTCAA+AGG | - | chr4_1:82100798-82100817 | Msa0577800:three_prime_UTR | 45.0% | |
| TCCAAAACCCGGTTCTCAAA+GGG | - | chr4_1:82100799-82100818 | Msa0577800:three_prime_UTR | 45.0% | |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:82100840-82100859 | None:intergenic | 45.0% | |
| ATAGAGCTGACCAAGAGAGA+TGG | - | chr4_1:82100859-82100878 | Msa0577800:three_prime_UTR | 45.0% | |
| TAGAGCTGACCAAGAGAGAT+GGG | - | chr4_1:82100860-82100879 | Msa0577800:three_prime_UTR | 45.0% | |
| !!! | CTGCTTTTTCCCATCTCTCT+TGG | + | chr4_1:82100872-82100891 | None:intergenic | 45.0% |
| GATAAGCTAAACACCACTGC+AGG | - | chr4_1:82100954-82100973 | Msa0577800:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | - | chr4_1:82100980-82100999 | Msa0577800:CDS | 45.0% |
| TGGGGCTATTATATTGGGGA+AGG | - | chr4_1:82101043-82101062 | Msa0577800:CDS | 45.0% | |
| TTAACCGTAGCTGAGCTTGT+TGG | - | chr4_1:82101429-82101448 | Msa0577800:intron | 45.0% | |
| ! | TAACCGTAGCTGAGCTTGTT+GGG | - | chr4_1:82101430-82101449 | Msa0577800:intron | 45.0% |
| ! | CGCCATGAATGTGTTTTGTG+GGG | + | chr4_1:82101473-82101492 | None:intergenic | 45.0% |
| TTCCATAAGCTTCGGTCCAT+TGG | + | chr4_1:82101556-82101575 | None:intergenic | 45.0% | |
| GGCCATGTAATTAGGACCTT+TGG | + | chr4_1:82101603-82101622 | None:intergenic | 45.0% | |
| TGGTTGGAGGCCATGTAATT+AGG | + | chr4_1:82101611-82101630 | None:intergenic | 45.0% | |
| AAACCTTGTGGATCAAGCAG+TGG | - | chr4_1:82101775-82101794 | Msa0577800:CDS | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:82101835-82101854 | Msa0577800:intron | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | + | chr4_1:82101854-82101873 | None:intergenic | 45.0% | |
| CTACTAGTTAGGCCAACTGT+TGG | + | chr4_1:82101907-82101926 | None:intergenic | 45.0% | |
| CTACACCTGCTCTACTAGTT+AGG | + | chr4_1:82101918-82101937 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | - | chr4_1:82101932-82101951 | Msa0577800:CDS | 45.0% | |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | + | chr4_1:82102132-82102151 | None:intergenic | 45.0% |
| GAAAGGAAAGAGATTGGGAG+TGG | - | chr4_1:82102226-82102245 | Msa0577800:intron | 45.0% | |
| TGCTTCACCAGTGAAAAGCT+TGG | - | chr4_1:82102712-82102731 | Msa0577800:intron | 45.0% | |
| ! | ACTTCTGCCAAGCTTTTCAC+TGG | + | chr4_1:82102722-82102741 | None:intergenic | 45.0% |
| TGAGTATGGCCAAGATGTCA+TGG | - | chr4_1:82102966-82102985 | Msa0577800:intron | 45.0% | |
| ACGTGGCTAAAGGACCAAAA+AGG | + | chr4_1:82103117-82103136 | None:intergenic | 45.0% | |
| AACCTCCAATAGCAAGTACG+TGG | + | chr4_1:82103134-82103153 | None:intergenic | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | - | chr4_1:82103138-82103157 | Msa0577800:CDS | 45.0% |
| ! | ACACCCTTTTCATATCCTGC+TGG | + | chr4_1:82103174-82103193 | None:intergenic | 45.0% |
| ! | GCTTTCTTTGGAAGGCAAGC+TGG | + | chr4_1:82100731-82100750 | None:intergenic | 50.0% |
| CCAAAACCCGGTTCTCAAAG+GGG | - | chr4_1:82100800-82100819 | Msa0577800:three_prime_UTR | 50.0% | |
| ! | TCCAACACCCCTTTGAGAAC+CGG | + | chr4_1:82100810-82100829 | None:intergenic | 50.0% |
| CAATGCAAAAGAGCCTGCAG+TGG | + | chr4_1:82100970-82100989 | None:intergenic | 50.0% | |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | - | chr4_1:82100972-82100991 | Msa0577800:CDS | 50.0% |
| TTAACAACGCCTGCGTCTCT+TGG | + | chr4_1:82101008-82101027 | None:intergenic | 50.0% | |
| ATATGACCACTCACTCAGGG+TGG | + | chr4_1:82101069-82101088 | None:intergenic | 50.0% | |
| CTAATGGAGCTCCTAGTGCT+TGG | - | chr4_1:82101096-82101115 | Msa0577800:CDS | 50.0% | |
| !! | AACCGTAGCTGAGCTTGTTG+GGG | - | chr4_1:82101431-82101450 | Msa0577800:intron | 50.0% |
| TTCCCCAACAAGCTCAGCTA+CGG | + | chr4_1:82101436-82101455 | None:intergenic | 50.0% | |
| ! | GTTTTGTGGGGATCGAACTG+CGG | + | chr4_1:82101461-82101480 | None:intergenic | 50.0% |
| GTCCAATGGACCGAAGCTTA+TGG | - | chr4_1:82101551-82101570 | Msa0577800:CDS | 50.0% | |
| !!! | TGTAGCTTTTGGGGTGCCAA+AGG | - | chr4_1:82101584-82101603 | Msa0577800:CDS | 50.0% |
| GATCCACTGCTTGATCCACA+AGG | + | chr4_1:82101781-82101800 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTTATGCCCTTC+AGG | - | chr4_1:82101856-82101875 | Msa0577800:intron | 50.0% |
| GTGGGCATCAAACCAACAGT+TGG | - | chr4_1:82101892-82101911 | Msa0577800:intron | 50.0% | |
| ! | GTTGGCCTAACTAGTAGAGC+AGG | - | chr4_1:82101910-82101929 | Msa0577800:CDS | 50.0% |
| AGTTCCAATTAGCCCAAGGC+AGG | - | chr4_1:82101936-82101955 | Msa0577800:CDS | 50.0% | |
| CAGCTTGCACCATGACATCT+TGG | + | chr4_1:82102978-82102997 | None:intergenic | 50.0% | |
| !! | AGCCACGTACTTGCTATTGG+AGG | - | chr4_1:82103129-82103148 | Msa0577800:CDS | 50.0% |
| !! | CCCCTTTGAGAACCGGGTTT+TGG | + | chr4_1:82100803-82100822 | None:intergenic | 55.0% |
| ! | CCAACACCCCTTTGAGAACC+GGG | + | chr4_1:82100809-82100828 | None:intergenic | 55.0% |
| !! | GGTTCTCAAAGGGGTGTTGG+AGG | - | chr4_1:82100809-82100828 | Msa0577800:three_prime_UTR | 55.0% |
| ! | TCCTAGTGCTTGGAGTGCCA+GGG | - | chr4_1:82101106-82101125 | Msa0577800:CDS | 55.0% |
| TACCTTTCCATGTCCACCCC+TGG | + | chr4_1:82101126-82101145 | None:intergenic | 55.0% | |
| !! | GTAGCTGAGCTTGTTGGGGA+AGG | - | chr4_1:82101435-82101454 | Msa0577800:intron | 55.0% |
| GTGTCCTGCCTTGGGCTAAT+TGG | + | chr4_1:82101943-82101962 | None:intergenic | 55.0% | |
| ACCCAACTGTGTCCTGCCTT+GGG | + | chr4_1:82101951-82101970 | None:intergenic | 55.0% | |
| TACCCAACTGTGTCCTGCCT+TGG | + | chr4_1:82101952-82101971 | None:intergenic | 55.0% | |
| ! | CCCGGTTCTCAAAGGGGTGT+TGG | - | chr4_1:82100806-82100825 | Msa0577800:three_prime_UTR | 60.0% |
| ! | TCAGTGGTGCCAAGAGACGC+AGG | - | chr4_1:82100996-82101015 | Msa0577800:CDS | 60.0% |
| ! | CTCCTAGTGCTTGGAGTGCC+AGG | - | chr4_1:82101105-82101124 | Msa0577800:CDS | 60.0% |
| ! | CCTAGTGCTTGGAGTGCCAG+GGG | - | chr4_1:82101107-82101126 | Msa0577800:CDS | 60.0% |
| TGCCAGGGGTGGACATGGAA+AGG | - | chr4_1:82101121-82101140 | Msa0577800:CDS | 60.0% | |
| AGCCCAAGGCAGGACACAGT+TGG | - | chr4_1:82101946-82101965 | Msa0577800:CDS | 60.0% | |
| GCCCAAGGCAGGACACAGTT+GGG | - | chr4_1:82101947-82101966 | Msa0577800:CDS | 60.0% | |
| CCTGCTGGAACACTCACTCC+AGG | + | chr4_1:82103159-82103178 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | - | chr4_1:82103156-82103175 | Msa0577800:CDS | 60.0% | |
| GGAAGGCCACCCTGAGTGAG+TGG | - | chr4_1:82101060-82101079 | Msa0577800:CDS | 65.0% | |
| CCCCTGGCACTCCAAGCACT+AGG | + | chr4_1:82101110-82101129 | None:intergenic | 65.0% | |
| ! | AGTGCTTGGAGTGCCAGGGG+TGG | - | chr4_1:82101110-82101129 | Msa0577800:CDS | 65.0% |
| ! | TGGAGTGCCAGGGGTGGACA+TGG | - | chr4_1:82101116-82101135 | Msa0577800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82100589 | 82103630 | 82100589 | ID=Msa0577800;Name=Msa0577800 |
| chr4_1 | mRNA | 82100589 | 82103630 | 82100589 | ID=Msa0577800-mRNA-1;Parent=Msa0577800;Name=Msa0577800-mRNA-1;_AED=0.38;_eAED=0.38;_QI=5|0.75|0.8|1|1|1|5|319|568 |
| chr4_1 | exon | 82100589 | 82101261 | 82100589 | ID=Msa0577800-mRNA-1:exon:29718;Parent=Msa0577800-mRNA-1 |
| chr4_1 | exon | 82101447 | 82101801 | 82101447 | ID=Msa0577800-mRNA-1:exon:29717;Parent=Msa0577800-mRNA-1 |
| chr4_1 | exon | 82101898 | 82102134 | 82101898 | ID=Msa0577800-mRNA-1:exon:29716;Parent=Msa0577800-mRNA-1 |
| chr4_1 | exon | 82102251 | 82102462 | 82102251 | ID=Msa0577800-mRNA-1:exon:29715;Parent=Msa0577800-mRNA-1 |
| chr4_1 | exon | 82103077 | 82103630 | 82103077 | ID=Msa0577800-mRNA-1:exon:29714;Parent=Msa0577800-mRNA-1 |
| chr4_1 | five_prime_UTR | 82103626 | 82103630 | 82103626 | ID=Msa0577800-mRNA-1:five_prime_utr;Parent=Msa0577800-mRNA-1 |
| chr4_1 | CDS | 82103077 | 82103625 | 82103077 | ID=Msa0577800-mRNA-1:cds;Parent=Msa0577800-mRNA-1 |
| chr4_1 | CDS | 82102251 | 82102462 | 82102251 | ID=Msa0577800-mRNA-1:cds;Parent=Msa0577800-mRNA-1 |
| chr4_1 | CDS | 82101898 | 82102134 | 82101898 | ID=Msa0577800-mRNA-1:cds;Parent=Msa0577800-mRNA-1 |
| chr4_1 | CDS | 82101447 | 82101801 | 82101447 | ID=Msa0577800-mRNA-1:cds;Parent=Msa0577800-mRNA-1 |
| chr4_1 | CDS | 82100908 | 82101261 | 82100908 | ID=Msa0577800-mRNA-1:cds;Parent=Msa0577800-mRNA-1 |
| chr4_1 | three_prime_UTR | 82100589 | 82100907 | 82100589 | ID=Msa0577800-mRNA-1:three_prime_utr;Parent=Msa0577800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
