Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564350 | XP_003608231.1 | 96.552 | 377 | 8 | 1 | 1 | 372 | 1 | 377 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564350 | sp|Q84MD8|FHYRK_ARATH | 72.703 | 370 | 96 | 1 | 5 | 369 | 8 | 377 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564350 | B7FII7 | 96.552 | 377 | 8 | 1 | 1 | 372 | 1 | 377 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0564350 | Msa0613240 | 0.882610 | 9.018687e-71 | -8.615850e-47 |
| Msa0564350 | Msa0696190 | 0.863816 | 1.899765e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564350 | MtrunA17_Chr4g0048231 | 96.552 | 377 | 8 | 1 | 1 | 372 | 1 | 377 | 0.0 | 737 |
| Msa0564350 | MtrunA17_Chr2g0325581 | 43.213 | 361 | 182 | 6 | 8 | 360 | 11 | 356 | 2.06e-85 | 263 |
| Msa0564350 | MtrunA17_Chr4g0072381 | 38.158 | 228 | 129 | 6 | 5 | 220 | 71 | 298 | 3.72e-39 | 141 |
| Msa0564350 | MtrunA17_Chr7g0271811 | 39.286 | 112 | 68 | 0 | 74 | 185 | 148 | 259 | 1.14e-16 | 82.0 |
| Msa0564350 | MtrunA17_Chr8g0386821 | 34.677 | 124 | 79 | 2 | 87 | 210 | 217 | 338 | 4.56e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564350 | AT4G21470.1 | 72.703 | 370 | 96 | 1 | 5 | 369 | 8 | 377 | 0.0 | 570 |
| Msa0564350 | AT5G57440.1 | 35.345 | 232 | 138 | 5 | 1 | 220 | 7 | 238 | 5.34e-35 | 129 |
| Msa0564350 | AT4G25840.1 | 34.649 | 228 | 137 | 5 | 5 | 220 | 68 | 295 | 7.55e-33 | 125 |
| Msa0564350 | AT1G56500.2 | 28.922 | 204 | 136 | 3 | 8 | 202 | 74 | 277 | 1.31e-15 | 79.0 |
| Msa0564350 | AT1G56500.1 | 28.922 | 204 | 136 | 3 | 8 | 202 | 74 | 277 | 1.85e-15 | 78.6 |
| Msa0564350 | AT2G38740.1 | 30.151 | 199 | 129 | 5 | 8 | 197 | 22 | 219 | 1.23e-11 | 64.7 |
| Msa0564350 | AT4G11570.1 | 35.354 | 99 | 63 | 1 | 89 | 187 | 216 | 313 | 1.78e-11 | 65.5 |
| Msa0564350 | AT4G11570.2 | 35.354 | 99 | 63 | 1 | 89 | 187 | 216 | 313 | 1.78e-11 | 65.5 |
Find 108 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTTTCTCTGTCATAAT+TGG | 0.152007 | 4_1:-64978708 | Msa0564350:CDS |
| ACCATCATGAAAGGATATTT+TGG | 0.192325 | 4_1:+64978845 | None:intergenic |
| TCTGCTGTTGTTGAAGATTA+TGG | 0.225099 | 4_1:-64980118 | Msa0564350:CDS |
| CATCCTGCAGGAGTTTATTT+TGG | 0.229456 | 4_1:-64976567 | Msa0564350:CDS |
| GAATTCACTGAGGATTTCTA+TGG | 0.263692 | 4_1:-64976354 | Msa0564350:CDS |
| TTTGGTTGGGCTGGATTATC+AGG | 0.274210 | 4_1:-64976549 | Msa0564350:CDS |
| CCTGTAGATCCTTGGTATAT+TGG | 0.295784 | 4_1:-64976926 | Msa0564350:CDS |
| TGCATAGATAGTAATGAAAA+AGG | 0.307144 | 4_1:-64975947 | Msa0564350:three_prime_UTR |
| ATTCTTTCTCTGTCATAATT+GGG | 0.321681 | 4_1:-64978707 | Msa0564350:CDS |
| TAAAGAGATGAGACTGTTTC+GGG | 0.326397 | 4_1:+64977141 | None:intergenic |
| TAAATGTGTTATCCTTGATT+TGG | 0.327756 | 4_1:-64980269 | Msa0564350:CDS |
| TTTAGCTTGATTCTCATGTT+AGG | 0.350614 | 4_1:-64978977 | Msa0564350:intron |
| AAGGTTTCGTTAGGAAAGTA+TGG | 0.352809 | 4_1:-64980202 | Msa0564350:CDS |
| TTGAAGCTGCTAGGAGGTTA+AGG | 0.356565 | 4_1:-64978536 | Msa0564350:CDS |
| AGCTCGGAAACAAATTCAAT+TGG | 0.369365 | 4_1:+64980082 | None:intergenic |
| AGAGAAACCCTTAAAATTGT+TGG | 0.374738 | 4_1:-64980163 | Msa0564350:CDS |
| AAATATTAAAAGTGAAATAA+TGG | 0.381621 | 4_1:+64975924 | None:intergenic |
| GTAAAGAGATGAGACTGTTT+CGG | 0.383126 | 4_1:+64977140 | None:intergenic |
| TCTTAGCAATCAAGCTTTCA+AGG | 0.400030 | 4_1:+64976184 | None:intergenic |
| GCAATCAAGCTTTCAAGGGT+TGG | 0.401958 | 4_1:+64976189 | None:intergenic |
| TGCAATATTAAAGCACTTCC+TGG | 0.406753 | 4_1:-64978951 | Msa0564350:CDS |
| TTGACTGCCTGCTGGCAATT+CGG | 0.407115 | 4_1:-64975903 | Msa0564350:three_prime_UTR |
| GGTCGTGGCTCGAAAGTTCT+CGG | 0.407645 | 4_1:-64976881 | Msa0564350:CDS |
| GAGAAACCCTTAAAATTGTT+GGG | 0.412718 | 4_1:-64980162 | Msa0564350:CDS |
| GGTCCTGTCATCAAGGGATT+TGG | 0.431696 | 4_1:-64976902 | Msa0564350:CDS |
| GCTCGGAAACAAATTCAATT+GGG | 0.442340 | 4_1:+64980083 | None:intergenic |
| TTTCAAGTTGCAAATCAAGT+AGG | 0.447646 | 4_1:+64977093 | None:intergenic |
| CAATGGAGTTCCAATGGCCT+TGG | 0.458958 | 4_1:-64978898 | Msa0564350:CDS |
| TAGGAAAGTATGGAAAAGAA+TGG | 0.466192 | 4_1:-64980192 | Msa0564350:CDS |
| TTTAATATTTGACTGCCTGC+TGG | 0.467539 | 4_1:-64975911 | Msa0564350:three_prime_UTR |
| TTACACGTCAAATTGTGTTA+TGG | 0.467955 | 4_1:+64975972 | None:intergenic |
| TCCTATGTATTCAAGTCATA+AGG | 0.468954 | 4_1:-64976121 | Msa0564350:CDS |
| AAAGTTCTCGGGATTCCTAC+AGG | 0.476631 | 4_1:-64976869 | Msa0564350:intron |
| TTGATTTGCAACTTGAAAAG+TGG | 0.477544 | 4_1:-64977088 | Msa0564350:CDS |
| ATTAAACATTTGAAGAGCAA+TGG | 0.478640 | 4_1:-64978915 | Msa0564350:CDS |
| GTCGTGGCTCGAAAGTTCTC+GGG | 0.478902 | 4_1:-64976880 | Msa0564350:CDS |
| GAGTTTGATGCCAAGGCCAT+TGG | 0.479604 | 4_1:+64978888 | None:intergenic |
| CAGGATTTACAATCTGCAAA+TGG | 0.482532 | 4_1:+64977056 | None:intergenic |
| TGCAGGTAAGGCTGCTGAGA+TGG | 0.483409 | 4_1:-64977186 | Msa0564350:CDS |
| CCTTGGAGAGTTTGATGCCA+AGG | 0.484287 | 4_1:+64978881 | None:intergenic |
| TTCAAGTTGCAAATCAAGTA+GGG | 0.485434 | 4_1:+64977094 | None:intergenic |
| GAACTTTGCCTGTAGATCCT+TGG | 0.486092 | 4_1:-64976934 | Msa0564350:CDS |
| CCAATATACCAAGGATCTAC+AGG | 0.494991 | 4_1:+64976926 | None:intergenic |
| GAACTGAAGCTGGTTATAGT+TGG | 0.496876 | 4_1:-64976327 | Msa0564350:CDS |
| TTTAAAATGGTGATGAGCAT+TGG | 0.500703 | 4_1:-64976516 | Msa0564350:CDS |
| GTAGATCCTTGGTATATTGG+TGG | 0.501602 | 4_1:-64976923 | Msa0564350:CDS |
| ACCCGGTGTTACTGCAGGTA+AGG | 0.503151 | 4_1:-64977198 | Msa0564350:CDS |
| GTCTTCGATGACAAGACAGC+TGG | 0.504789 | 4_1:+64978503 | None:intergenic |
| CTATGGGGAAGAACTGAAGC+TGG | 0.505509 | 4_1:-64976337 | Msa0564350:CDS |
| TATTGGTGGTCCTGTCATCA+AGG | 0.507795 | 4_1:-64976909 | Msa0564350:CDS |
| AAATGGTGATGAGCATTGGT+TGG | 0.508754 | 4_1:-64976512 | Msa0564350:CDS |
| CTCCTTGCAGAGCATCCTGC+AGG | 0.509182 | 4_1:-64976579 | Msa0564350:CDS |
| CAAATGTTTAATCAACCGAT+TGG | 0.511593 | 4_1:+64978926 | None:intergenic |
| AAGCACTTCCTGGTGCCAAT+CGG | 0.516099 | 4_1:-64978941 | Msa0564350:CDS |
| TTCAGCTAATTTGTCAACAA+AGG | 0.517774 | 4_1:-64976613 | Msa0564350:intron |
| TTGGCATCGATGCTTTCCCT+TGG | 0.517938 | 4_1:+64978864 | None:intergenic |
| TGATTTGCAACTTGAAAAGT+GGG | 0.520051 | 4_1:-64977087 | Msa0564350:CDS |
| TTCTTTCTCTGTCATAATTG+GGG | 0.524522 | 4_1:-64978706 | Msa0564350:CDS |
| CAACCAAAATAAACTCCTGC+AGG | 0.530476 | 4_1:+64976564 | None:intergenic |
| AGCTTGATTCTCATGTTAGG+TGG | 0.532667 | 4_1:-64978974 | Msa0564350:CDS |
| AGGAAAGTATGGAAAAGAAT+GGG | 0.534914 | 4_1:-64980191 | Msa0564350:CDS |
| GAGCGCTCTCCGCAACTCTA+CGG | 0.536066 | 4_1:+64976151 | None:intergenic |
| GTCATCAAGGGATTTGGTCG+TGG | 0.537773 | 4_1:-64976896 | Msa0564350:CDS |
| AATTCACTGAGGATTTCTAT+GGG | 0.538308 | 4_1:-64976353 | Msa0564350:CDS |
| GCGTGGTGATTAAGAACCAC+AGG | 0.539138 | 4_1:+64975996 | None:intergenic |
| ACAAATTCAATTGGGGAGCA+AGG | 0.540277 | 4_1:+64980091 | None:intergenic |
| GCATCTCACATGTCAGGGGA+AGG | 0.542718 | 4_1:+64978660 | None:intergenic |
| CCTTGGCATCAAACTCTCCA+AGG | 0.545690 | 4_1:-64978881 | Msa0564350:CDS |
| CTTAGCAATCAAGCTTTCAA+GGG | 0.548535 | 4_1:+64976185 | None:intergenic |
| AGCCTTACCTGCAGTAACAC+CGG | 0.551513 | 4_1:+64977196 | None:intergenic |
| TAAATCAATACCATCATGAA+AGG | 0.556031 | 4_1:+64978836 | None:intergenic |
| GCAACGTGCCATCCAAATCA+AGG | 0.556859 | 4_1:+64980257 | None:intergenic |
| TTCAGACCCGGTGTTACTGC+AGG | 0.558872 | 4_1:-64977203 | Msa0564350:intron |
| CGACCAAATCCCTTGATGAC+AGG | 0.562166 | 4_1:+64976899 | None:intergenic |
| TTAATCAACCGATTGGCACC+AGG | 0.562930 | 4_1:+64978933 | None:intergenic |
| CTTTGTTGTATTATTCCCTG+TGG | 0.565934 | 4_1:-64976012 | Msa0564350:three_prime_UTR |
| TGTGTTATCCTTGATTTGGA+TGG | 0.565979 | 4_1:-64980265 | Msa0564350:CDS |
| GAAGAGCAATGGAGTTCCAA+TGG | 0.568733 | 4_1:-64978904 | Msa0564350:CDS |
| TCTCTTTACTGCAGCAGATG+AGG | 0.569566 | 4_1:-64977126 | Msa0564350:CDS |
| TGAGACTGTTTCGGGAGTGA+TGG | 0.574590 | 4_1:+64977149 | None:intergenic |
| TGGGCTGGATTATCAGGAAG+AGG | 0.577968 | 4_1:-64976543 | Msa0564350:CDS |
| AAAGGGTCCGAATTGCCAGC+AGG | 0.578719 | 4_1:+64975896 | None:intergenic |
| GCCAAAATATCCTTTCATGA+TGG | 0.584619 | 4_1:-64978846 | Msa0564350:intron |
| TCAGATTCTTTGAAGCTGCT+AGG | 0.587275 | 4_1:-64978545 | Msa0564350:intron |
| GCCTTACCTGCAGTAACACC+GGG | 0.589155 | 4_1:+64977197 | None:intergenic |
| GGCACGTTGCTCAACACAGA+TGG | 0.591025 | 4_1:-64980244 | Msa0564350:CDS |
| CTCCTGCAGGATGCTCTGCA+AGG | 0.598721 | 4_1:+64976577 | None:intergenic |
| TCATGAAGACCGTAGAGTTG+CGG | 0.599063 | 4_1:-64976160 | Msa0564350:CDS |
| TGGCACTAGTACAAATGCTG+AGG | 0.602305 | 4_1:+64976042 | None:intergenic |
| AAGTATGGAAAAGAATGGGA+TGG | 0.605962 | 4_1:-64980187 | Msa0564350:CDS |
| ATTGGTGGTCCTGTCATCAA+GGG | 0.609764 | 4_1:-64976908 | Msa0564350:CDS |
| CTTGGCATCAAACTCTCCAA+GGG | 0.613970 | 4_1:-64978880 | Msa0564350:CDS |
| TCTTTCTCTGTCATAATTGG+GGG | 0.619478 | 4_1:-64978705 | Msa0564350:CDS |
| TCCTTATGACTTGAATACAT+AGG | 0.622413 | 4_1:+64976120 | None:intergenic |
| GTGAATTCATGAAGCAACCA+TGG | 0.626836 | 4_1:+64976369 | None:intergenic |
| CTCGGAAACAAATTCAATTG+GGG | 0.630680 | 4_1:+64980084 | None:intergenic |
| TAAGGCTGCTGAGATGGAAG+TGG | 0.643789 | 4_1:-64977180 | Msa0564350:CDS |
| TCAAATTGTGTTATGGTGCG+TGG | 0.655163 | 4_1:+64975979 | None:intergenic |
| ACAGCAGAAGCAGCTTCAAG+CGG | 0.656284 | 4_1:+64980133 | None:intergenic |
| GATTCTTTGAAGCTGCTAGG+AGG | 0.656943 | 4_1:-64978542 | Msa0564350:CDS |
| TCGATGACAAGACAGCTGGA+AGG | 0.657356 | 4_1:+64978507 | None:intergenic |
| AGTTGGTTACATACGTCCTG+AGG | 0.662929 | 4_1:-64976310 | Msa0564350:intron |
| GATTTACAATCTGCAAATGG+TGG | 0.664343 | 4_1:+64977059 | None:intergenic |
| CGTGGTGATTAAGAACCACA+GGG | 0.689826 | 4_1:+64975997 | None:intergenic |
| ACAGGACCACCAATATACCA+AGG | 0.706611 | 4_1:+64976917 | None:intergenic |
| ATTCACTGAGGATTTCTATG+GGG | 0.723967 | 4_1:-64976352 | Msa0564350:CDS |
| GATTTGCAACTTGAAAAGTG+GGG | 0.725632 | 4_1:-64977086 | Msa0564350:CDS |
| GTTGCTTCATGAATTCACTG+AGG | 0.733231 | 4_1:-64976364 | Msa0564350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTACAAATATAATTAA+GGG | + | chr4_1:64977853-64977872 | None:intergenic | 10.0% |
| !! | CTTAATTATATTTGTAATAT+GGG | - | chr4_1:64977852-64977871 | Msa0564350:intron | 10.0% |
| !! | GAAAATATTCTAAATATTAT+TGG | - | chr4_1:64978200-64978219 | Msa0564350:intron | 10.0% |
| !! | ATCAAATTATAAACTTAAAT+GGG | + | chr4_1:64978284-64978303 | None:intergenic | 10.0% |
| !!! | TTCATTAAAAAAGTATTATA+TGG | + | chr4_1:64978548-64978567 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAGAAAAAAATG+TGG | + | chr4_1:64978958-64978977 | None:intergenic | 10.0% |
| !! | AAATATTAAAAGTGAAATAA+TGG | + | chr4_1:64980272-64980291 | None:intergenic | 10.0% |
| !!! | ACAAATCAACATTTAAAATA+AGG | + | chr4_1:64976197-64976216 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTTT+CGG | - | chr4_1:64976270-64976289 | Msa0564350:intron | 15.0% |
| !!! | TTTATGTTTTATTTGATTAG+AGG | - | chr4_1:64976670-64976689 | Msa0564350:intron | 15.0% |
| !! | AAATAACAATTTATTGCAAT+CGG | + | chr4_1:64976797-64976816 | None:intergenic | 15.0% |
| !! | CCATATTACAAATATAATTA+AGG | + | chr4_1:64977854-64977873 | None:intergenic | 15.0% |
| !! | CCTTAATTATATTTGTAATA+TGG | - | chr4_1:64977851-64977870 | Msa0564350:intron | 15.0% |
| !!! | ATTTTCTTTTTTATATGAAG+AGG | + | chr4_1:64978186-64978205 | None:intergenic | 15.0% |
| !! | CATCAAATTATAAACTTAAA+TGG | + | chr4_1:64978285-64978304 | None:intergenic | 15.0% |
| !!! | TTTTCTAAAAAATATCTACT+TGG | - | chr4_1:64978963-64978982 | Msa0564350:CDS | 15.0% |
| !!! | TTAGGTCTATTTATATTTTA+AGG | - | chr4_1:64979541-64979560 | Msa0564350:intron | 15.0% |
| !! | AAGAAATAGTAATTACTGAT+CGG | + | chr4_1:64976151-64976170 | None:intergenic | 20.0% |
| !! | AAAATTAGAAAACAAGGTAA+TGG | + | chr4_1:64976566-64976585 | None:intergenic | 20.0% |
| !! | AACTCAAAAATTAGAAAACA+AGG | + | chr4_1:64976572-64976591 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAATTTTTGAGT+TGG | - | chr4_1:64976571-64976590 | Msa0564350:CDS | 20.0% |
| !!! | TTGTTGATTTTTTTAAGTAC+TGG | - | chr4_1:64976896-64976915 | Msa0564350:CDS | 20.0% |
| !!! | TTTATATTCTTTTTCTATGC+AGG | - | chr4_1:64977455-64977474 | Msa0564350:intron | 20.0% |
| !!! | TTCTGAAAAATTGTGATTTA+TGG | - | chr4_1:64977623-64977642 | Msa0564350:intron | 20.0% |
| !! | TTATATTTGTAATATGGGAT+AGG | - | chr4_1:64977857-64977876 | Msa0564350:intron | 20.0% |
| !! | TATATTTGTAATATGGGATA+GGG | - | chr4_1:64977858-64977877 | Msa0564350:intron | 20.0% |
| !! | TTTAGATTAAAGAAAATGGA+GGG | - | chr4_1:64978073-64978092 | Msa0564350:intron | 20.0% |
| !!! | TTACTCATTTTTAACTTGTA+AGG | - | chr4_1:64978371-64978390 | Msa0564350:intron | 20.0% |
| !! | TGCATAATTCTCATATATTT+GGG | + | chr4_1:64979508-64979527 | None:intergenic | 20.0% |
| !! | TTGCATAATTCTCATATATT+TGG | + | chr4_1:64979509-64979528 | None:intergenic | 20.0% |
| !!! | TCTATTTATATTTTAAGGCT+CGG | - | chr4_1:64979546-64979565 | Msa0564350:intron | 20.0% |
| !!! | TTTTCTTTGTTGTTGAAATA+TGG | + | chr4_1:64979710-64979729 | None:intergenic | 20.0% |
| !! | TAGATTATATGAAAATTCTG+AGG | + | chr4_1:64979780-64979799 | None:intergenic | 20.0% |
| !!! | ATATTTATTTTTCTCTCTGT+AGG | - | chr4_1:64979799-64979818 | Msa0564350:intron | 20.0% |
| !!! | TTTTGAGTTTCTCTAAAATT+GGG | - | chr4_1:64979957-64979976 | Msa0564350:intron | 20.0% |
| ! | TAAATGTGTTATCCTTGATT+TGG | - | chr4_1:64975924-64975943 | Msa0564350:three_prime_UTR | 25.0% |
| !! | TGTTTTCCCAACAATTTTAA+GGG | + | chr4_1:64976040-64976059 | None:intergenic | 25.0% |
| ! | TCTTGTAAAACAAAAACTAG+TGG | - | chr4_1:64976337-64976356 | Msa0564350:CDS | 25.0% |
| ! | TATTATGCTGCTAATATCTT+AGG | - | chr4_1:64976394-64976413 | Msa0564350:intron | 25.0% |
| ! | ATTATGCTGCTAATATCTTA+GGG | - | chr4_1:64976395-64976414 | Msa0564350:intron | 25.0% |
| ! | TACTTAAGAGAAAAAATGTG+AGG | - | chr4_1:64976453-64976472 | Msa0564350:intron | 25.0% |
| ! | TACGTTGTTTACAACAATAT+TGG | + | chr4_1:64976753-64976772 | None:intergenic | 25.0% |
| !! | AAGTGAATCCATCATTTTAT+AGG | - | chr4_1:64976944-64976963 | Msa0564350:CDS | 25.0% |
| ! | ATATGGTTCCTATAAAATGA+TGG | + | chr4_1:64976955-64976974 | None:intergenic | 25.0% |
| ! | CAATTGAACAAAGATCATAT+CGG | + | chr4_1:64977062-64977081 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGAAGAGCAA+TGG | - | chr4_1:64977278-64977297 | Msa0564350:intron | 25.0% |
| ! | TAAATCAATACCATCATGAA+AGG | + | chr4_1:64977360-64977379 | None:intergenic | 25.0% |
| ! | TATCACAAACAATGCAAAAA+AGG | + | chr4_1:64977410-64977429 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTGTCATAATT+GGG | - | chr4_1:64977486-64977505 | Msa0564350:intron | 25.0% |
| ! | TTGTTTATCCTTGATTATTG+AGG | - | chr4_1:64977566-64977585 | Msa0564350:intron | 25.0% |
| ! | TGTTTATCCTTGATTATTGA+GGG | - | chr4_1:64977567-64977586 | Msa0564350:intron | 25.0% |
| ! | TAAATCAGAGTTAGAATAGA+AGG | + | chr4_1:64977729-64977748 | None:intergenic | 25.0% |
| !!! | AGGATTAAATTTTCAAGAGA+AGG | + | chr4_1:64977785-64977804 | None:intergenic | 25.0% |
| !!! | GTAGCTTATTTTTGTTGAAT+TGG | - | chr4_1:64977963-64977982 | Msa0564350:intron | 25.0% |
| !!! | TATTTTTGTTGAATTGGCAT+AGG | - | chr4_1:64977969-64977988 | Msa0564350:intron | 25.0% |
| !! | ATTTTTGTTGAATTGGCATA+GGG | - | chr4_1:64977970-64977989 | Msa0564350:intron | 25.0% |
| !! | CACATGCTATTTGATTAAAT+TGG | - | chr4_1:64978042-64978061 | Msa0564350:intron | 25.0% |
| ! | AGCCTTTAGATTAAAGAAAA+TGG | - | chr4_1:64978069-64978088 | Msa0564350:intron | 25.0% |
| !! | CTCCATTTTCTTTAATCTAA+AGG | + | chr4_1:64978074-64978093 | None:intergenic | 25.0% |
| ! | CTTTAGATTAAAGAAAATGG+AGG | - | chr4_1:64978072-64978091 | Msa0564350:intron | 25.0% |
| ! | TGTGTAATAATTACAAGGAT+GGG | + | chr4_1:64978143-64978162 | None:intergenic | 25.0% |
| ! | ATGTCTGTGTAATAATTACA+AGG | + | chr4_1:64978148-64978167 | None:intergenic | 25.0% |
| ! | CAGCTATGAAATAAATCTAA+TGG | - | chr4_1:64978307-64978326 | Msa0564350:intron | 25.0% |
| !!! | TTTTTAACTTGTAAGGATGA+TGG | - | chr4_1:64978378-64978397 | Msa0564350:intron | 25.0% |
| ! | TCATGGTTTCCAATTAATTT+AGG | - | chr4_1:64978652-64978671 | Msa0564350:intron | 25.0% |
| ! | ATTTCCTTTATTGGTATGTA+CGG | - | chr4_1:64979191-64979210 | Msa0564350:intron | 25.0% |
| ! | TAGCATTATGATTTATTGCA+GGG | - | chr4_1:64979229-64979248 | Msa0564350:intron | 25.0% |
| ! | AGCAACTACTAAATAGAATT+GGG | + | chr4_1:64979447-64979466 | None:intergenic | 25.0% |
| ! | AAGCAACTACTAAATAGAAT+TGG | + | chr4_1:64979448-64979467 | None:intergenic | 25.0% |
| ! | CATAATTCTCATATATTTGG+GGG | + | chr4_1:64979506-64979525 | None:intergenic | 25.0% |
| ! | GCATAATTCTCATATATTTG+GGG | + | chr4_1:64979507-64979526 | None:intergenic | 25.0% |
| !! | ATGCAATCTTAAACAGTTTT+AGG | - | chr4_1:64979523-64979542 | Msa0564350:intron | 25.0% |
| !!! | AGGAAGAGGTATTTTTAAAA+TGG | - | chr4_1:64979664-64979683 | Msa0564350:intron | 25.0% |
| !!! | AGTTGTTTATTTTAAACCTC+TGG | - | chr4_1:64979740-64979759 | Msa0564350:intron | 25.0% |
| ! | GCATGATTTAGAAATAATGT+AGG | + | chr4_1:64979920-64979939 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTTTCTCTAAAAT+TGG | - | chr4_1:64979956-64979975 | Msa0564350:intron | 25.0% |
| !!! | CTCATAGTACTGATTTTATT+AGG | - | chr4_1:64980114-64980133 | Msa0564350:CDS | 25.0% |
| !!! | TAATACAACAAAGCTGTTTT+TGG | + | chr4_1:64980174-64980193 | None:intergenic | 25.0% |
| ! | TGCATAGATAGTAATGAAAA+AGG | - | chr4_1:64980246-64980265 | Msa0564350:CDS | 25.0% |
| ! | TAGGAAAGTATGGAAAAGAA+TGG | - | chr4_1:64976001-64976020 | Msa0564350:three_prime_UTR | 30.0% |
| ! | AGGAAAGTATGGAAAAGAAT+GGG | - | chr4_1:64976002-64976021 | Msa0564350:three_prime_UTR | 30.0% |
| AGAGAAACCCTTAAAATTGT+TGG | - | chr4_1:64976030-64976049 | Msa0564350:three_prime_UTR | 30.0% | |
| GAGAAACCCTTAAAATTGTT+GGG | - | chr4_1:64976031-64976050 | Msa0564350:three_prime_UTR | 30.0% | |
| ! | GTGTTTTCCCAACAATTTTA+AGG | + | chr4_1:64976041-64976060 | None:intergenic | 30.0% |
| ! | GTGGTATAAAAATGCACTTT+TGG | - | chr4_1:64976356-64976375 | Msa0564350:CDS | 30.0% |
| TTATGCTGCTAATATCTTAG+GGG | - | chr4_1:64976396-64976415 | Msa0564350:intron | 30.0% | |
| CTCTTAAGTAAATCTTGCAA+TGG | + | chr4_1:64976443-64976462 | None:intergenic | 30.0% | |
| TCTTGTGATCTTAGTTGAAT+AGG | - | chr4_1:64976599-64976618 | Msa0564350:CDS | 30.0% | |
| ! | CTTTTTAGACGTATAACTCT+GGG | - | chr4_1:64976700-64976719 | Msa0564350:intron | 30.0% |
| ! | TTTTTAGACGTATAACTCTG+GGG | - | chr4_1:64976701-64976720 | Msa0564350:intron | 30.0% |
| TGTTTACAACAATATTGGTC+TGG | + | chr4_1:64976748-64976767 | None:intergenic | 30.0% | |
| ATCTGTTAATGAATTTCCCA+AGG | + | chr4_1:64976991-64977010 | None:intergenic | 30.0% | |
| CGATATGATCTTTGTTCAAT+TGG | - | chr4_1:64977060-64977079 | Msa0564350:intron | 30.0% | |
| ACGAAACATATGATACACAA+AGG | + | chr4_1:64977089-64977108 | None:intergenic | 30.0% | |
| !! | CTTTGAAGTACAAGTTCAAT+TGG | + | chr4_1:64977171-64977190 | None:intergenic | 30.0% |
| CTTGTACTTCAAAGTTATGA+AGG | - | chr4_1:64977177-64977196 | Msa0564350:CDS | 30.0% | |
| !! | TTTAGCTTGATTCTCATGTT+AGG | - | chr4_1:64977216-64977235 | Msa0564350:intron | 30.0% |
| CAAATGTTTAATCAACCGAT+TGG | + | chr4_1:64977270-64977289 | None:intergenic | 30.0% | |
| ! | ACCATCATGAAAGGATATTT+TGG | + | chr4_1:64977351-64977370 | None:intergenic | 30.0% |
| ! | TATTCTTTTTCTATGCAGGA+TGG | - | chr4_1:64977459-64977478 | Msa0564350:intron | 30.0% |
| GATTCTTTCTCTGTCATAAT+TGG | - | chr4_1:64977485-64977504 | Msa0564350:intron | 30.0% | |
| TTCTTTCTCTGTCATAATTG+GGG | - | chr4_1:64977487-64977506 | Msa0564350:intron | 30.0% | |
| !!! | TCTTTTTGAAGTGTAACGAT+AGG | + | chr4_1:64977805-64977824 | None:intergenic | 30.0% |
| TTGCTTATTTGTGCTTAATC+TGG | - | chr4_1:64977929-64977948 | Msa0564350:intron | 30.0% | |
| ! | TTTTTGTTGAATTGGCATAG+GGG | - | chr4_1:64977971-64977990 | Msa0564350:intron | 30.0% |
| ATTAAAGAAAATGGAGGGAT+AGG | - | chr4_1:64978078-64978097 | Msa0564350:intron | 30.0% | |
| CTGTGTAATAATTACAAGGA+TGG | + | chr4_1:64978144-64978163 | None:intergenic | 30.0% | |
| TGAAATAAATCTAATGGCTG+AGG | - | chr4_1:64978313-64978332 | Msa0564350:intron | 30.0% | |
| !! | TGTTGTTATGTTGATAGCTT+GGG | - | chr4_1:64978338-64978357 | Msa0564350:intron | 30.0% |
| TATTTGATGAGTGCTTATTC+AGG | - | chr4_1:64978442-64978461 | Msa0564350:intron | 30.0% | |
| TGATTGATTAACAGAGAAAG+CGG | - | chr4_1:64978478-64978497 | Msa0564350:intron | 30.0% | |
| TGAGCACACATACAATAAAT+AGG | + | chr4_1:64978583-64978602 | None:intergenic | 30.0% | |
| TATTTATTGTATGTGTGCTC+AGG | - | chr4_1:64978582-64978601 | Msa0564350:intron | 30.0% | |
| TGGACAAGACCTAAATTAAT+TGG | + | chr4_1:64978664-64978683 | None:intergenic | 30.0% | |
| ! | ACCATGTTTGAAGTATCAAA+GGG | + | chr4_1:64978735-64978754 | None:intergenic | 30.0% |
| ! | AACCATGTTTGAAGTATCAA+AGG | + | chr4_1:64978736-64978755 | None:intergenic | 30.0% |
| GATACTTCAAACATGGTTTA+TGG | - | chr4_1:64978738-64978757 | Msa0564350:intron | 30.0% | |
| TGTGCATATCTTCTTATAAC+TGG | - | chr4_1:64978815-64978834 | Msa0564350:intron | 30.0% | |
| !! | GTTCAATCCGTATTACTTTT+TGG | - | chr4_1:64978856-64978875 | Msa0564350:CDS | 30.0% |
| GATTCAGCCAAAAAGTAATA+CGG | + | chr4_1:64978866-64978885 | None:intergenic | 30.0% | |
| !! | TTCAAGTTGCAAATCAAGTA+GGG | + | chr4_1:64979102-64979121 | None:intergenic | 30.0% |
| !! | TTTCAAGTTGCAAATCAAGT+AGG | + | chr4_1:64979103-64979122 | None:intergenic | 30.0% |
| !! | TTGATTTGCAACTTGAAAAG+TGG | - | chr4_1:64979105-64979124 | Msa0564350:intron | 30.0% |
| ! | TGATTTGCAACTTGAAAAGT+GGG | - | chr4_1:64979106-64979125 | Msa0564350:intron | 30.0% |
| AATACCGTACATACCAATAA+AGG | + | chr4_1:64979198-64979217 | None:intergenic | 30.0% | |
| CTAGCATTATGATTTATTGC+AGG | - | chr4_1:64979228-64979247 | Msa0564350:intron | 30.0% | |
| AGCATTATGATTTATTGCAG+GGG | - | chr4_1:64979230-64979249 | Msa0564350:intron | 30.0% | |
| AAAACTGAAAACAAACCTGT+AGG | + | chr4_1:64979342-64979361 | None:intergenic | 30.0% | |
| !! | TTTTCACTTATTTCTTGTGC+TGG | - | chr4_1:64979358-64979377 | Msa0564350:intron | 30.0% |
| ! | TTCAGCTAATTTGTCAACAA+AGG | - | chr4_1:64979580-64979599 | Msa0564350:intron | 30.0% |
| ! | TTTAAAATGGTGATGAGCAT+TGG | - | chr4_1:64979677-64979696 | Msa0564350:intron | 30.0% |
| AATTCACTGAGGATTTCTAT+GGG | - | chr4_1:64979840-64979859 | Msa0564350:intron | 30.0% | |
| TCCTATGTATTCAAGTCATA+AGG | - | chr4_1:64980072-64980091 | Msa0564350:intron | 30.0% | |
| TCCTTATGACTTGAATACAT+AGG | + | chr4_1:64980076-64980095 | None:intergenic | 30.0% | |
| TTACACGTCAAATTGTGTTA+TGG | + | chr4_1:64980224-64980243 | None:intergenic | 30.0% | |
| !! | TGTGTTATCCTTGATTTGGA+TGG | - | chr4_1:64975928-64975947 | Msa0564350:three_prime_UTR | 35.0% |
| !! | CATAGTTTGCAACGTTTTGA+AGG | - | chr4_1:64975972-64975991 | Msa0564350:three_prime_UTR | 35.0% |
| !!! | AACGTTTTGAAGGTTTCGTT+AGG | - | chr4_1:64975982-64976001 | Msa0564350:three_prime_UTR | 35.0% |
| AAGGTTTCGTTAGGAAAGTA+TGG | - | chr4_1:64975991-64976010 | Msa0564350:three_prime_UTR | 35.0% | |
| AAGTATGGAAAAGAATGGGA+TGG | - | chr4_1:64976006-64976025 | Msa0564350:three_prime_UTR | 35.0% | |
| TCTGCTGTTGTTGAAGATTA+TGG | - | chr4_1:64976075-64976094 | Msa0564350:three_prime_UTR | 35.0% | |
| CTCGGAAACAAATTCAATTG+GGG | + | chr4_1:64976112-64976131 | None:intergenic | 35.0% | |
| GCTCGGAAACAAATTCAATT+GGG | + | chr4_1:64976113-64976132 | None:intergenic | 35.0% | |
| AGCTCGGAAACAAATTCAAT+TGG | + | chr4_1:64976114-64976133 | None:intergenic | 35.0% | |
| AATTACTGATCGGAGAATTG+CGG | + | chr4_1:64976141-64976160 | None:intergenic | 35.0% | |
| ! | TAGTCTGTCATTGTTTTCGT+AGG | - | chr4_1:64976532-64976551 | Msa0564350:CDS | 35.0% |
| TAGTTGAATAGGCTATTCGT+TGG | - | chr4_1:64976610-64976629 | Msa0564350:CDS | 35.0% | |
| AGTTGAATAGGCTATTCGTT+GGG | - | chr4_1:64976611-64976630 | Msa0564350:CDS | 35.0% | |
| CCAGAGTTATACGTCTAAAA+AGG | + | chr4_1:64976702-64976721 | None:intergenic | 35.0% | |
| ! | CCTTTTTAGACGTATAACTC+TGG | - | chr4_1:64976699-64976718 | Msa0564350:intron | 35.0% |
| ! | TTTTAGACGTATAACTCTGG+GGG | - | chr4_1:64976702-64976721 | Msa0564350:intron | 35.0% |
| AAGGAAAAGAGGATTGGATA+TGG | + | chr4_1:64976972-64976991 | None:intergenic | 35.0% | |
| ! | ATATCCAATCCTCTTTTCCT+TGG | - | chr4_1:64976971-64976990 | Msa0564350:intron | 35.0% |
| ! | TATCCAATCCTCTTTTCCTT+GGG | - | chr4_1:64976972-64976991 | Msa0564350:intron | 35.0% |
| ATGAATTTCCCAAGGAAAAG+AGG | + | chr4_1:64976983-64977002 | None:intergenic | 35.0% | |
| ! | GGGACAAATTTTCTAGATGT+AGG | + | chr4_1:64977020-64977039 | None:intergenic | 35.0% |
| ! | GATCATGAACTAATTGACTC+GGG | + | chr4_1:64977040-64977059 | None:intergenic | 35.0% |
| GGATCATGAACTAATTGACT+CGG | + | chr4_1:64977041-64977060 | None:intergenic | 35.0% | |
| ! | TGCAATATTAAAGCACTTCC+TGG | - | chr4_1:64977242-64977261 | Msa0564350:intron | 35.0% |
| GCCAAAATATCCTTTCATGA+TGG | - | chr4_1:64977347-64977366 | Msa0564350:intron | 35.0% | |
| TCTTTCTCTGTCATAATTGG+GGG | - | chr4_1:64977488-64977507 | Msa0564350:intron | 35.0% | |
| ! | ATTTTGCATCTCACATGTCA+GGG | + | chr4_1:64977541-64977560 | None:intergenic | 35.0% |
| ! | TATTTTGCATCTCACATGTC+AGG | + | chr4_1:64977542-64977561 | None:intergenic | 35.0% |
| CAAGTAACCCTCAATAATCA+AGG | + | chr4_1:64977577-64977596 | None:intergenic | 35.0% | |
| TCTAACTCTGATTTATGTGC+CGG | - | chr4_1:64977734-64977753 | Msa0564350:intron | 35.0% | |
| TAATATGGGATAGGGTCAAA+TGG | - | chr4_1:64977866-64977885 | Msa0564350:intron | 35.0% | |
| ACAAATAAGCAAGCGTGATT+TGG | + | chr4_1:64977921-64977940 | None:intergenic | 35.0% | |
| CTTATTTGTGCTTAATCTGG+TGG | - | chr4_1:64977932-64977951 | Msa0564350:intron | 35.0% | |
| !! | CTGTTGTTATGTTGATAGCT+TGG | - | chr4_1:64978337-64978356 | Msa0564350:intron | 35.0% |
| GATTGATTAACAGAGAAAGC+GGG | - | chr4_1:64978479-64978498 | Msa0564350:intron | 35.0% | |
| ! | TTCTTTTTGTGACGTCTTCA+TGG | - | chr4_1:64978635-64978654 | Msa0564350:intron | 35.0% |
| ! | CTTTTGCAGATAGTTGTAAC+TGG | + | chr4_1:64978684-64978703 | None:intergenic | 35.0% |
| ACCCTTTGATACTTCAAACA+TGG | - | chr4_1:64978731-64978750 | Msa0564350:intron | 35.0% | |
| TAAAGAGATGAGACTGTTTC+GGG | + | chr4_1:64979055-64979074 | None:intergenic | 35.0% | |
| GTAAAGAGATGAGACTGTTT+CGG | + | chr4_1:64979056-64979075 | None:intergenic | 35.0% | |
| GATTTGCAACTTGAAAAGTG+GGG | - | chr4_1:64979107-64979126 | Msa0564350:intron | 35.0% | |
| GATTTACAATCTGCAAATGG+TGG | + | chr4_1:64979137-64979156 | None:intergenic | 35.0% | |
| CAGGATTTACAATCTGCAAA+TGG | + | chr4_1:64979140-64979159 | None:intergenic | 35.0% | |
| ! | AGTGTTATCTCAAGGTATTC+AGG | + | chr4_1:64979159-64979178 | None:intergenic | 35.0% |
| ! | AGACACAAAGTGTTATCTCA+AGG | + | chr4_1:64979167-64979186 | None:intergenic | 35.0% |
| TGTCTCTGCATTTCCTTTAT+TGG | - | chr4_1:64979182-64979201 | Msa0564350:intron | 35.0% | |
| ATTATGATTTATTGCAGGGG+TGG | - | chr4_1:64979233-64979252 | Msa0564350:intron | 35.0% | |
| ACGTAGAGAGAAGCAAAATA+TGG | - | chr4_1:64979393-64979412 | Msa0564350:intron | 35.0% | |
| CGTAGAGAGAAGCAAAATAT+GGG | - | chr4_1:64979394-64979413 | Msa0564350:intron | 35.0% | |
| TAATTCATAATGATGCCCTG+AGG | - | chr4_1:64979417-64979436 | Msa0564350:intron | 35.0% | |
| ATAGAATTGGGATAACCTCA+GGG | + | chr4_1:64979435-64979454 | None:intergenic | 35.0% | |
| AATAGAATTGGGATAACCTC+AGG | + | chr4_1:64979436-64979455 | None:intergenic | 35.0% | |
| ! | TAAGCTTGAGATCCTGATTT+TGG | - | chr4_1:64979474-64979493 | Msa0564350:intron | 35.0% |
| !!! | TGCAGGAGTTTATTTTGGTT+GGG | - | chr4_1:64979631-64979650 | Msa0564350:intron | 35.0% |
| GGTAAAATAGTTATAGCCAG+AGG | + | chr4_1:64979759-64979778 | None:intergenic | 35.0% | |
| GAATTCACTGAGGATTTCTA+TGG | - | chr4_1:64979839-64979858 | Msa0564350:intron | 35.0% | |
| ATTCACTGAGGATTTCTATG+GGG | - | chr4_1:64979841-64979860 | Msa0564350:intron | 35.0% | |
| CAAAAGATGAAGAACATGAC+AGG | + | chr4_1:64979942-64979961 | None:intergenic | 35.0% | |
| CTTAGCAATCAAGCTTTCAA+GGG | + | chr4_1:64980011-64980030 | None:intergenic | 35.0% | |
| TCTTAGCAATCAAGCTTTCA+AGG | + | chr4_1:64980012-64980031 | None:intergenic | 35.0% | |
| ! | CTTTGTTGTATTATTCCCTG+TGG | - | chr4_1:64980181-64980200 | Msa0564350:CDS | 35.0% |
| TTTAATATTTGACTGCCTGC+TGG | - | chr4_1:64980282-64980301 | Msa0564350:CDS | 35.0% | |
| ACAAATTCAATTGGGGAGCA+AGG | + | chr4_1:64976105-64976124 | None:intergenic | 40.0% | |
| TCGGTATTCAATACACATCG+AGG | - | chr4_1:64976289-64976308 | Msa0564350:intron | 40.0% | |
| GTTGAATAGGCTATTCGTTG+GGG | - | chr4_1:64976612-64976631 | Msa0564350:intron | 40.0% | |
| TTTAGACGTATAACTCTGGG+GGG | - | chr4_1:64976703-64976722 | Msa0564350:intron | 40.0% | |
| TTTCCCAAGGAAAAGAGGAT+TGG | + | chr4_1:64976978-64976997 | None:intergenic | 40.0% | |
| AACCAAGTAACTGCGTTTAC+AGG | + | chr4_1:64977141-64977160 | None:intergenic | 40.0% | |
| TGTAAACGCAGTTACTTGGT+TGG | - | chr4_1:64977140-64977159 | Msa0564350:CDS | 40.0% | |
| AGCTTGATTCTCATGTTAGG+TGG | - | chr4_1:64977219-64977238 | Msa0564350:intron | 40.0% | |
| TTCAGAAACCTTACGCTTCT+TGG | - | chr4_1:64977381-64977400 | Msa0564350:intron | 40.0% | |
| ! | TTTTGCATCTCACATGTCAG+GGG | + | chr4_1:64977540-64977559 | None:intergenic | 40.0% |
| !! | TCAGATTCTTTGAAGCTGCT+AGG | - | chr4_1:64977648-64977667 | Msa0564350:intron | 40.0% |
| CATCAAAGAAGACTTGAAGC+CGG | + | chr4_1:64977756-64977775 | None:intergenic | 40.0% | |
| GTCTCTCACTATCTCTTTCT+TGG | + | chr4_1:64977999-64978018 | None:intergenic | 40.0% | |
| GAAAATGGAGGGATAGGATT+TGG | - | chr4_1:64978084-64978103 | Msa0564350:intron | 40.0% | |
| AAAAGTCCAGACAGAATCAC+TGG | + | chr4_1:64978253-64978272 | None:intergenic | 40.0% | |
| !!! | AGGATGATGGCTTGTTTTTG+AGG | - | chr4_1:64978391-64978410 | Msa0564350:intron | 40.0% |
| !!! | TGATGGCTTGTTTTTGAGGA+AGG | - | chr4_1:64978395-64978414 | Msa0564350:intron | 40.0% |
| GTATCAAAGGGTAGACTCAT+AGG | + | chr4_1:64978723-64978742 | None:intergenic | 40.0% | |
| ! | TGAATCCTCCCCTTTTGTTA+TGG | - | chr4_1:64978880-64978899 | Msa0564350:CDS | 40.0% |
| AGTGCAGACCATAACAAAAG+GGG | + | chr4_1:64978891-64978910 | None:intergenic | 40.0% | |
| GAGTGCAGACCATAACAAAA+GGG | + | chr4_1:64978892-64978911 | None:intergenic | 40.0% | |
| TGAGTGCAGACCATAACAAA+AGG | + | chr4_1:64978893-64978912 | None:intergenic | 40.0% | |
| CCAATATACCAAGGATCTAC+AGG | + | chr4_1:64979270-64979289 | None:intergenic | 40.0% | |
| CCTGTAGATCCTTGGTATAT+TGG | - | chr4_1:64979267-64979286 | Msa0564350:intron | 40.0% | |
| GTAGATCCTTGGTATATTGG+TGG | - | chr4_1:64979270-64979289 | Msa0564350:intron | 40.0% | |
| TGGGGGAAAATTCCAAAATC+AGG | + | chr4_1:64979489-64979508 | None:intergenic | 40.0% | |
| ! | CATCCTGCAGGAGTTTATTT+TGG | - | chr4_1:64979626-64979645 | Msa0564350:intron | 40.0% |
| CAACCAAAATAAACTCCTGC+AGG | + | chr4_1:64979632-64979651 | None:intergenic | 40.0% | |
| !!! | CTGCAGGAGTTTATTTTGGT+TGG | - | chr4_1:64979630-64979649 | Msa0564350:intron | 40.0% |
| !! | AAATGGTGATGAGCATTGGT+TGG | - | chr4_1:64979681-64979700 | Msa0564350:intron | 40.0% |
| ! | TTTTCTCTCTGTAGGAACCA+TGG | - | chr4_1:64979807-64979826 | Msa0564350:intron | 40.0% |
| GTGAATTCATGAAGCAACCA+TGG | + | chr4_1:64979827-64979846 | None:intergenic | 40.0% | |
| GTTGCTTCATGAATTCACTG+AGG | - | chr4_1:64979829-64979848 | Msa0564350:intron | 40.0% | |
| GAACTGAAGCTGGTTATAGT+TGG | - | chr4_1:64979866-64979885 | Msa0564350:intron | 40.0% | |
| TCAAATTGTGTTATGGTGCG+TGG | + | chr4_1:64980217-64980236 | None:intergenic | 40.0% | |
| TGCTAATATCTTAGGGGCCT+AGG | - | chr4_1:64976402-64976421 | Msa0564350:intron | 45.0% | |
| GCTAATATCTTAGGGGCCTA+GGG | - | chr4_1:64976403-64976422 | Msa0564350:intron | 45.0% | |
| CTAATATCTTAGGGGCCTAG+GGG | - | chr4_1:64976404-64976423 | Msa0564350:intron | 45.0% | |
| ! | CTATTCGTTGGGGCATTTCA+GGG | - | chr4_1:64976622-64976641 | Msa0564350:intron | 45.0% |
| CTCCTGTAAACGCAGTTACT+TGG | - | chr4_1:64977136-64977155 | Msa0564350:CDS | 45.0% | |
| TTAATCAACCGATTGGCACC+AGG | + | chr4_1:64977263-64977282 | None:intergenic | 45.0% | |
| GAAGAGCAATGGAGTTCCAA+TGG | - | chr4_1:64977289-64977308 | Msa0564350:intron | 45.0% | |
| CTTGGCATCAAACTCTCCAA+GGG | - | chr4_1:64977313-64977332 | Msa0564350:intron | 45.0% | |
| ! | AAAGGAGTCCAAGAAGCGTA+AGG | + | chr4_1:64977392-64977411 | None:intergenic | 45.0% |
| !! | GATTCTTTGAAGCTGCTAGG+AGG | - | chr4_1:64977651-64977670 | Msa0564350:intron | 45.0% |
| TTGAAGCTGCTAGGAGGTTA+AGG | - | chr4_1:64977657-64977676 | Msa0564350:intron | 45.0% | |
| CGGCTTCAAGTCTTCTTTGA+TGG | - | chr4_1:64977754-64977773 | Msa0564350:intron | 45.0% | |
| TGCTTAATCTGGTGGCTTAC+AGG | - | chr4_1:64977940-64977959 | Msa0564350:intron | 45.0% | |
| GCTTAATCTGGTGGCTTACA+GGG | - | chr4_1:64977941-64977960 | Msa0564350:intron | 45.0% | |
| GAGATAGTGAGAGACTCTGA+AGG | - | chr4_1:64978004-64978023 | Msa0564350:intron | 45.0% | |
| ! | CTCTGAAGGAGAGACATAGT+AGG | - | chr4_1:64978018-64978037 | Msa0564350:intron | 45.0% |
| GGATGGGATCAATTGACATC+AGG | + | chr4_1:64978127-64978146 | None:intergenic | 45.0% | |
| ! | AGGGGGTGTAGGATGTTTAA+CGG | + | chr4_1:64978230-64978249 | None:intergenic | 45.0% |
| ! | AACAGAGAAAGCGGGTGTTT+TGG | - | chr4_1:64978487-64978506 | Msa0564350:intron | 45.0% |
| ! | ACAGAGAAAGCGGGTGTTTT+GGG | - | chr4_1:64978488-64978507 | Msa0564350:intron | 45.0% |
| TCTCTTTACTGCAGCAGATG+AGG | - | chr4_1:64979067-64979086 | Msa0564350:intron | 45.0% | |
| GAACTTTGCCTGTAGATCCT+TGG | - | chr4_1:64979259-64979278 | Msa0564350:intron | 45.0% | |
| ACAGGACCACCAATATACCA+AGG | + | chr4_1:64979279-64979298 | None:intergenic | 45.0% | |
| ! | TATTGGTGGTCCTGTCATCA+AGG | - | chr4_1:64979284-64979303 | Msa0564350:intron | 45.0% |
| ! | ATTGGTGGTCCTGTCATCAA+GGG | - | chr4_1:64979285-64979304 | Msa0564350:intron | 45.0% |
| AAAGTTCTCGGGATTCCTAC+AGG | - | chr4_1:64979324-64979343 | Msa0564350:intron | 45.0% | |
| !!! | GGAGTTTATTTTGGTTGGGC+TGG | - | chr4_1:64979635-64979654 | Msa0564350:intron | 45.0% |
| ! | TTTGGTTGGGCTGGATTATC+AGG | - | chr4_1:64979644-64979663 | Msa0564350:intron | 45.0% |
| AGTTGGTTACATACGTCCTG+AGG | - | chr4_1:64979883-64979902 | Msa0564350:intron | 45.0% | |
| GTTACATACGTCCTGAGGTA+TGG | - | chr4_1:64979888-64979907 | Msa0564350:intron | 45.0% | |
| GCAATCAAGCTTTCAAGGGT+TGG | + | chr4_1:64980007-64980026 | None:intergenic | 45.0% | |
| TCATGAAGACCGTAGAGTTG+CGG | - | chr4_1:64980033-64980052 | Msa0564350:intron | 45.0% | |
| TGGCACTAGTACAAATGCTG+AGG | + | chr4_1:64980154-64980173 | None:intergenic | 45.0% | |
| CGTGGTGATTAAGAACCACA+GGG | + | chr4_1:64980199-64980218 | None:intergenic | 45.0% | |
| !!! | AATTTTTTACTTAATTTAAA+AGG | - | chr4_1:64978771-64978790 | Msa0564350:intron | 5.0% |
| GCAACGTGCCATCCAAATCA+AGG | + | chr4_1:64975939-64975958 | None:intergenic | 50.0% | |
| ACAGCAGAAGCAGCTTCAAG+CGG | + | chr4_1:64976063-64976082 | None:intergenic | 50.0% | |
| GGAGAATTGCGGAGAAAGCT+CGG | + | chr4_1:64976130-64976149 | None:intergenic | 50.0% | |
| CGTGTCAGTCTGTGCTTCAT+AGG | + | chr4_1:64976222-64976241 | None:intergenic | 50.0% | |
| ! | GCTATTCGTTGGGGCATTTC+AGG | - | chr4_1:64976621-64976640 | Msa0564350:intron | 50.0% |
| !! | TCTGGGGGGTTGATGTTGTA+TGG | - | chr4_1:64976717-64976736 | Msa0564350:intron | 50.0% |
| !! | CTGGGGGGTTGATGTTGTAT+GGG | - | chr4_1:64976718-64976737 | Msa0564350:intron | 50.0% |
| ! | AAGCACTTCCTGGTGCCAAT+CGG | - | chr4_1:64977252-64977271 | Msa0564350:intron | 50.0% |
| CAATGGAGTTCCAATGGCCT+TGG | - | chr4_1:64977295-64977314 | Msa0564350:intron | 50.0% | |
| GAGTTTGATGCCAAGGCCAT+TGG | + | chr4_1:64977308-64977327 | None:intergenic | 50.0% | |
| CCTTGGAGAGTTTGATGCCA+AGG | + | chr4_1:64977315-64977334 | None:intergenic | 50.0% | |
| CCTTGGCATCAAACTCTCCA+AGG | - | chr4_1:64977312-64977331 | Msa0564350:intron | 50.0% | |
| !! | TTGGCATCGATGCTTTCCCT+TGG | + | chr4_1:64977332-64977351 | None:intergenic | 50.0% |
| TCGATGACAAGACAGCTGGA+AGG | + | chr4_1:64977689-64977708 | None:intergenic | 50.0% | |
| GTCTTCGATGACAAGACAGC+TGG | + | chr4_1:64977693-64977712 | None:intergenic | 50.0% | |
| TCCAGACAGAATCACTGGAG+GGG | + | chr4_1:64978248-64978267 | None:intergenic | 50.0% | |
| GTCCAGACAGAATCACTGGA+GGG | + | chr4_1:64978249-64978268 | None:intergenic | 50.0% | |
| AGTCCAGACAGAATCACTGG+AGG | + | chr4_1:64978250-64978269 | None:intergenic | 50.0% | |
| GCAGACCATAACAAAAGGGG+AGG | + | chr4_1:64978888-64978907 | None:intergenic | 50.0% | |
| CTACTTGGCTACTTCAGACC+CGG | - | chr4_1:64978978-64978997 | Msa0564350:intron | 50.0% | |
| AGCCTTACCTGCAGTAACAC+CGG | + | chr4_1:64979000-64979019 | None:intergenic | 50.0% | |
| TAAGGCTGCTGAGATGGAAG+TGG | - | chr4_1:64979013-64979032 | Msa0564350:intron | 50.0% | |
| TGAGACTGTTTCGGGAGTGA+TGG | + | chr4_1:64979047-64979066 | None:intergenic | 50.0% | |
| GGTCCTGTCATCAAGGGATT+TGG | - | chr4_1:64979291-64979310 | Msa0564350:intron | 50.0% | |
| ! | CGACCAAATCCCTTGATGAC+AGG | + | chr4_1:64979297-64979316 | None:intergenic | 50.0% |
| ! | GTCATCAAGGGATTTGGTCG+TGG | - | chr4_1:64979297-64979316 | Msa0564350:intron | 50.0% |
| ! | TGGGCTGGATTATCAGGAAG+AGG | - | chr4_1:64979650-64979669 | Msa0564350:intron | 50.0% |
| CTATGGGGAAGAACTGAAGC+TGG | - | chr4_1:64979856-64979875 | Msa0564350:intron | 50.0% | |
| AATTGGGCACTCTGCATAGC+AGG | - | chr4_1:64979973-64979992 | Msa0564350:intron | 50.0% | |
| GCGTGGTGATTAAGAACCAC+AGG | + | chr4_1:64980200-64980219 | None:intergenic | 50.0% | |
| TTGACTGCCTGCTGGCAATT+CGG | - | chr4_1:64980290-64980309 | Msa0564350:CDS | 50.0% | |
| GGCACGTTGCTCAACACAGA+TGG | - | chr4_1:64975949-64975968 | Msa0564350:three_prime_UTR | 55.0% | |
| GGTGAATCTAGTGTGCCCCT+AGG | + | chr4_1:64976422-64976441 | None:intergenic | 55.0% | |
| GCATCTCACATGTCAGGGGA+AGG | + | chr4_1:64977536-64977555 | None:intergenic | 55.0% | |
| ! | AGAATCACTGGAGGGGGTGT+AGG | + | chr4_1:64978241-64978260 | None:intergenic | 55.0% |
| CCAGACAGAATCACTGGAGG+GGG | + | chr4_1:64978247-64978266 | None:intergenic | 55.0% | |
| !! | TTCAGACCCGGTGTTACTGC+AGG | - | chr4_1:64978990-64979009 | Msa0564350:intron | 55.0% |
| !! | ACCCGGTGTTACTGCAGGTA+AGG | - | chr4_1:64978995-64979014 | Msa0564350:intron | 55.0% |
| GCCTTACCTGCAGTAACACC+GGG | + | chr4_1:64978999-64979018 | None:intergenic | 55.0% | |
| TGCAGGTAAGGCTGCTGAGA+TGG | - | chr4_1:64979007-64979026 | Msa0564350:intron | 55.0% | |
| GGTCGTGGCTCGAAAGTTCT+CGG | - | chr4_1:64979312-64979331 | Msa0564350:intron | 55.0% | |
| GTCGTGGCTCGAAAGTTCTC+GGG | - | chr4_1:64979313-64979332 | Msa0564350:intron | 55.0% | |
| GGGGGAGACGAAGTTCGAAC+AGG | - | chr4_1:64977506-64977525 | Msa0564350:intron | 60.0% | |
| CCCCCTCCAGTGATTCTGTC+TGG | - | chr4_1:64978244-64978263 | Msa0564350:intron | 60.0% | |
| ! | CTCCTTGCAGAGCATCCTGC+AGG | - | chr4_1:64979614-64979633 | Msa0564350:intron | 60.0% |
| CTCCTGCAGGATGCTCTGCA+AGG | + | chr4_1:64979619-64979638 | None:intergenic | 60.0% | |
| GTAGGCTGCAGCCATACCTC+AGG | + | chr4_1:64979902-64979921 | None:intergenic | 60.0% | |
| GAGCGCTCTCCGCAACTCTA+CGG | + | chr4_1:64980045-64980064 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64975901 | 64980314 | 64975901 | ID=Msa0564350;Name=Msa0564350 |
| chr4_1 | mRNA | 64975901 | 64980314 | 64975901 | ID=Msa0564350-mRNA-1;Parent=Msa0564350;Name=Msa0564350-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.87|0.77|1|1|1|9|194|372 |
| chr4_1 | exon | 64975901 | 64976220 | 64975901 | ID=Msa0564350-mRNA-1:exon:20889;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64976311 | 64976394 | 64976311 | ID=Msa0564350-mRNA-1:exon:20888;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64976479 | 64976630 | 64976479 | ID=Msa0564350-mRNA-1:exon:20887;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64976870 | 64976965 | 64976870 | ID=Msa0564350-mRNA-1:exon:20886;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64977066 | 64977220 | 64977066 | ID=Msa0564350-mRNA-1:exon:20885;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64978498 | 64978563 | 64978498 | ID=Msa0564350-mRNA-1:exon:20884;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64978669 | 64978738 | 64978669 | ID=Msa0564350-mRNA-1:exon:20883;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64978847 | 64978994 | 64978847 | ID=Msa0564350-mRNA-1:exon:20882;Parent=Msa0564350-mRNA-1 |
| chr4_1 | exon | 64980093 | 64980314 | 64980093 | ID=Msa0564350-mRNA-1:exon:20881;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64980093 | 64980314 | 64980093 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64978847 | 64978994 | 64978847 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64978669 | 64978738 | 64978669 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64978498 | 64978563 | 64978498 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64977066 | 64977220 | 64977066 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64976870 | 64976965 | 64976870 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64976479 | 64976630 | 64976479 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64976311 | 64976394 | 64976311 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | CDS | 64976095 | 64976220 | 64976095 | ID=Msa0564350-mRNA-1:cds;Parent=Msa0564350-mRNA-1 |
| chr4_1 | three_prime_UTR | 64975901 | 64976094 | 64975901 | ID=Msa0564350-mRNA-1:three_prime_utr;Parent=Msa0564350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
