Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613240 | XP_003608231.1 | 91.247 | 377 | 2 | 1 | 2 | 347 | 1 | 377 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613240 | sp|Q84MD8|FHYRK_ARATH | 69.730 | 370 | 81 | 2 | 6 | 344 | 8 | 377 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613240 | Msa0624730 | 0.807856 | 4.120195e-50 | -8.615850e-47 |
| Msa0613240 | Msa0674220 | 0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa0613240 | Msa0696190 | 0.955675 | 1.755532e-113 | -8.615850e-47 |
| Msa0613240 | Msa0792510 | 0.800606 | 1.331908e-48 | -8.615850e-47 |
| Msa0613240 | Msa1008490 | 0.805487 | 1.303701e-49 | -8.615850e-47 |
| Msa0613240 | Msa1129560 | 0.803504 | 3.377579e-49 | -8.615850e-47 |
| Msa0613240 | Msa1129720 | 0.810902 | 9.148088e-51 | -8.615850e-47 |
| Msa0613240 | Msa1201990 | 0.808649 | 2.791279e-50 | -8.615850e-47 |
| Msa0613240 | Msa1221260 | 0.805489 | 1.302287e-49 | -8.615850e-47 |
| Msa0613240 | Msa1229690 | 0.806570 | 7.714645e-50 | -8.615850e-47 |
| Msa0613240 | Msa1254770 | 0.805522 | 1.281939e-49 | -8.615850e-47 |
| Msa0613240 | Msa1254800 | 0.803070 | 4.153474e-49 | -8.615850e-47 |
| Msa0613240 | Msa1280120 | 0.806933 | 6.466616e-50 | -8.615850e-47 |
| Msa0613240 | Msa1310110 | 0.814992 | 1.161571e-51 | -8.615850e-47 |
| Msa0613240 | Msa1337340 | 0.802812 | 4.697726e-49 | -8.615850e-47 |
| Msa0613240 | Msa1373950 | 0.801832 | 7.474656e-49 | -8.615850e-47 |
| Msa0613240 | Msa1442030 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0613240 | Msa1456810 | 0.806384 | 8.445628e-50 | -8.615850e-47 |
| Msa0374070 | Msa0613240 | 0.806893 | 6.594908e-50 | -8.615850e-47 |
| Msa0423250 | Msa0613240 | 0.809477 | 1.856125e-50 | -8.615850e-47 |
| Msa0469390 | Msa0613240 | 0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0269360 | Msa0613240 | 0.815769 | 7.802213e-52 | -8.615850e-47 |
| Msa0564350 | Msa0613240 | 0.882610 | 9.018687e-71 | -8.615850e-47 |
| Msa0581340 | Msa0613240 | 0.806946 | 6.424335e-50 | -8.615850e-47 |
| Msa0582110 | Msa0613240 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0596100 | Msa0613240 | 0.808195 | 3.489854e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613240 | MtrunA17_Chr4g0048231 | 91.247 | 377 | 2 | 1 | 2 | 347 | 1 | 377 | 0.0 | 688 |
| Msa0613240 | MtrunA17_Chr2g0325581 | 40.720 | 361 | 165 | 6 | 9 | 335 | 11 | 356 | 9.41e-75 | 235 |
| Msa0613240 | MtrunA17_Chr4g0072381 | 33.772 | 228 | 113 | 4 | 6 | 195 | 71 | 298 | 1.67e-32 | 123 |
| Msa0613240 | MtrunA17_Chr7g0271811 | 42.424 | 99 | 57 | 0 | 62 | 160 | 161 | 259 | 2.26e-16 | 80.5 |
| Msa0613240 | MtrunA17_Chr8g0386821 | 34.677 | 124 | 79 | 2 | 62 | 185 | 217 | 338 | 2.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613240 | AT4G21470.1 | 69.730 | 370 | 81 | 2 | 6 | 344 | 8 | 377 | 0.0 | 536 |
| Msa0613240 | AT5G57440.1 | 31.034 | 232 | 122 | 3 | 2 | 195 | 7 | 238 | 3.00e-28 | 110 |
| Msa0613240 | AT4G25840.1 | 31.304 | 230 | 116 | 4 | 6 | 195 | 68 | 295 | 4.47e-27 | 108 |
| Msa0613240 | AT1G56500.2 | 36.207 | 116 | 74 | 0 | 62 | 177 | 162 | 277 | 1.07e-14 | 75.9 |
| Msa0613240 | AT1G56500.1 | 36.207 | 116 | 74 | 0 | 62 | 177 | 162 | 277 | 1.33e-14 | 75.5 |
| Msa0613240 | AT4G11570.1 | 35.354 | 99 | 63 | 1 | 64 | 162 | 216 | 313 | 1.37e-11 | 65.5 |
| Msa0613240 | AT4G11570.2 | 35.354 | 99 | 63 | 1 | 64 | 162 | 216 | 313 | 1.37e-11 | 65.5 |
Find 100 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTTTCTCTGTCATAAT+TGG | 0.152007 | 4_2:+61927506 | Msa0613240:CDS |
| ACCATCATGAAAGGATATTT+TGG | 0.192325 | 4_2:-61927369 | None:intergenic |
| CATCCTGCAGGAGTTTATTT+TGG | 0.229456 | 4_2:+61929647 | Msa0613240:CDS |
| GAATTCACTGAGGATTTCTA+TGG | 0.263692 | 4_2:+61929860 | Msa0613240:CDS |
| TTTGGTTGGGCTGGATTATC+AGG | 0.274210 | 4_2:+61929665 | Msa0613240:CDS |
| CCTGTAGATCCTTGGTATAT+TGG | 0.295784 | 4_2:+61929288 | Msa0613240:CDS |
| TGCATAGATAGTAATGAAAA+AGG | 0.307144 | 4_2:+61930267 | Msa0613240:three_prime_UTR |
| ATTCTTTCTCTGTCATAATT+GGG | 0.321681 | 4_2:+61927507 | Msa0613240:CDS |
| TAAAGAGATGAGACTGTTTC+GGG | 0.326397 | 4_2:-61929073 | None:intergenic |
| TAAATGTGTTATCCTTGATT+TGG | 0.327756 | 4_2:+61925945 | Msa0613240:CDS |
| AAGGTTTCGTTAGGAAAGTA+TGG | 0.352809 | 4_2:+61926012 | Msa0613240:CDS |
| TTGAAGCTGCTAGGAGGTTA+AGG | 0.356565 | 4_2:+61927678 | Msa0613240:CDS |
| AGAGAAACCCTTAAAATTGT+TGG | 0.374738 | 4_2:+61926051 | Msa0613240:CDS |
| AAATATTAAAAGTGAAATAA+TGG | 0.381621 | 4_2:-61930290 | None:intergenic |
| GTAAAGAGATGAGACTGTTT+CGG | 0.383126 | 4_2:-61929074 | None:intergenic |
| TCTTAGCAATCAAGCTTTCA+AGG | 0.400030 | 4_2:-61930030 | None:intergenic |
| GCAATCAAGCTTTCAAGGGT+TGG | 0.401958 | 4_2:-61930025 | None:intergenic |
| TGCAATATTAAAGCACTTCC+TGG | 0.406753 | 4_2:+61927263 | Msa0613240:CDS |
| TTGACTGCCTGCTGGCAATT+CGG | 0.407115 | 4_2:+61930311 | Msa0613240:three_prime_UTR |
| GGTCGTGGCTCGAAAGTTCT+CGG | 0.407645 | 4_2:+61929333 | Msa0613240:CDS |
| GAGAAACCCTTAAAATTGTT+GGG | 0.412718 | 4_2:+61926052 | Msa0613240:CDS |
| GGTCCTGTCATCAAGGGATT+TGG | 0.431696 | 4_2:+61929312 | Msa0613240:CDS |
| TTTCAAGTTGCAAATCAAGT+AGG | 0.447646 | 4_2:-61929121 | None:intergenic |
| TTACACATCAAATTGTGTTA+TGG | 0.455258 | 4_2:-61930242 | None:intergenic |
| CAATGGAGTTCCAATGGCCT+TGG | 0.458958 | 4_2:+61927316 | Msa0613240:CDS |
| TAGGAAAGTATGGAAAAGAA+TGG | 0.466192 | 4_2:+61926022 | Msa0613240:CDS |
| TTTAATATTTGACTGCCTGC+TGG | 0.467539 | 4_2:+61930303 | Msa0613240:three_prime_UTR |
| TCCTATGTATTCAAGTCATA+AGG | 0.468954 | 4_2:+61930093 | Msa0613240:CDS |
| AAAGTTCTCGGGATTCCTAC+AGG | 0.476631 | 4_2:+61929345 | Msa0613240:CDS |
| TTGATTTGCAACTTGAAAAG+TGG | 0.477544 | 4_2:+61929126 | Msa0613240:CDS |
| ATTAAACATTTGAAGAGCAA+TGG | 0.478640 | 4_2:+61927299 | Msa0613240:CDS |
| GTCGTGGCTCGAAAGTTCTC+GGG | 0.478902 | 4_2:+61929334 | Msa0613240:CDS |
| GAGTTTGATGCCAAGGCCAT+TGG | 0.479604 | 4_2:-61927326 | None:intergenic |
| CAGGATTTACAATCTGCAAA+TGG | 0.482532 | 4_2:-61929158 | None:intergenic |
| TGCAGGTAAGGCTGCTGAGA+TGG | 0.483409 | 4_2:+61929028 | Msa0613240:CDS |
| CCTTGGAGAGTTTGATGCCA+AGG | 0.484287 | 4_2:-61927333 | None:intergenic |
| TTCAAGTTGCAAATCAAGTA+GGG | 0.485434 | 4_2:-61929120 | None:intergenic |
| GAACTTTGCCTGTAGATCCT+TGG | 0.486092 | 4_2:+61929280 | Msa0613240:CDS |
| CCAATATACCAAGGATCTAC+AGG | 0.494991 | 4_2:-61929288 | None:intergenic |
| GAACTGAAGCTGGTTATAGT+TGG | 0.496876 | 4_2:+61929887 | Msa0613240:CDS |
| TTTAAAATGGTGATGAGCAT+TGG | 0.500703 | 4_2:+61929698 | Msa0613240:CDS |
| GTAGATCCTTGGTATATTGG+TGG | 0.501602 | 4_2:+61929291 | Msa0613240:CDS |
| ACCCGGTGTTACTGCAGGTA+AGG | 0.503151 | 4_2:+61929016 | Msa0613240:CDS |
| GTCTTCGATGACAAGACAGC+TGG | 0.504789 | 4_2:-61927711 | None:intergenic |
| CTATGGGGAAGAACTGAAGC+TGG | 0.505509 | 4_2:+61929877 | Msa0613240:CDS |
| TATTGGTGGTCCTGTCATCA+AGG | 0.507795 | 4_2:+61929305 | Msa0613240:CDS |
| AAATGGTGATGAGCATTGGT+TGG | 0.508754 | 4_2:+61929702 | Msa0613240:CDS |
| CTCCTTGCAGAGCATCCTGC+AGG | 0.509182 | 4_2:+61929635 | Msa0613240:CDS |
| CAAATGTTTAATCAACCGAT+TGG | 0.511593 | 4_2:-61927288 | None:intergenic |
| AAGCACTTCCTGGTGCCAAT+CGG | 0.516099 | 4_2:+61927273 | Msa0613240:CDS |
| TTCAGCTAATTTGTCAACAA+AGG | 0.517774 | 4_2:+61929601 | Msa0613240:intron |
| TTGGCATCGATGCTTTCCCT+TGG | 0.517938 | 4_2:-61927350 | None:intergenic |
| TGATTTGCAACTTGAAAAGT+GGG | 0.520051 | 4_2:+61929127 | Msa0613240:CDS |
| TTCTTTCTCTGTCATAATTG+GGG | 0.524522 | 4_2:+61927508 | Msa0613240:CDS |
| CAACCAAAATAAACTCCTGC+AGG | 0.530476 | 4_2:-61929650 | None:intergenic |
| AGGAAAGTATGGAAAAGAAT+GGG | 0.534914 | 4_2:+61926023 | Msa0613240:CDS |
| GAGCGCTCTCCGCAACTCTA+CGG | 0.536066 | 4_2:-61930063 | None:intergenic |
| GTCATCAAGGGATTTGGTCG+TGG | 0.537773 | 4_2:+61929318 | Msa0613240:CDS |
| AATTCACTGAGGATTTCTAT+GGG | 0.538308 | 4_2:+61929861 | Msa0613240:CDS |
| GCGTGGTGATTAAGAACCAC+AGG | 0.539138 | 4_2:-61930218 | None:intergenic |
| GCATCTCACATGTCAGGGGA+AGG | 0.542718 | 4_2:-61927554 | None:intergenic |
| CCTTGGCATCAAACTCTCCA+AGG | 0.545690 | 4_2:+61927333 | Msa0613240:CDS |
| CTTAGCAATCAAGCTTTCAA+GGG | 0.548535 | 4_2:-61930029 | None:intergenic |
| AGCCTTACCTGCAGTAACAC+CGG | 0.551513 | 4_2:-61929018 | None:intergenic |
| TAAATCAATACCATCATGAA+AGG | 0.556031 | 4_2:-61927378 | None:intergenic |
| GCAACGTGCCATCCAAATCA+AGG | 0.556859 | 4_2:-61925957 | None:intergenic |
| TTCAGACCCGGTGTTACTGC+AGG | 0.558872 | 4_2:+61929011 | Msa0613240:intron |
| CGACCAAATCCCTTGATGAC+AGG | 0.562166 | 4_2:-61929315 | None:intergenic |
| TTAATCAACCGATTGGCACC+AGG | 0.562930 | 4_2:-61927281 | None:intergenic |
| CTTTGTTGTATTATTCCCTG+TGG | 0.565934 | 4_2:+61930202 | Msa0613240:three_prime_UTR |
| TGTGTTATCCTTGATTTGGA+TGG | 0.565979 | 4_2:+61925949 | Msa0613240:CDS |
| GAAGAGCAATGGAGTTCCAA+TGG | 0.568733 | 4_2:+61927310 | Msa0613240:CDS |
| TCTCTTTACTGCAGCAGATG+AGG | 0.569566 | 4_2:+61929088 | Msa0613240:CDS |
| TGAGACTGTTTCGGGAGTGA+TGG | 0.574590 | 4_2:-61929065 | None:intergenic |
| TGGGCTGGATTATCAGGAAG+AGG | 0.577968 | 4_2:+61929671 | Msa0613240:CDS |
| AAAGGGTCCGAATTGCCAGC+AGG | 0.578719 | 4_2:-61930318 | None:intergenic |
| GCCAAAATATCCTTTCATGA+TGG | 0.584619 | 4_2:+61927368 | Msa0613240:CDS |
| TCAGATTCTTTGAAGCTGCT+AGG | 0.587275 | 4_2:+61927669 | Msa0613240:intron |
| GCCTTACCTGCAGTAACACC+GGG | 0.589155 | 4_2:-61929017 | None:intergenic |
| GGCACGTTGCTCAACACAGA+TGG | 0.591025 | 4_2:+61925970 | Msa0613240:CDS |
| CTCCTGCAGGATGCTCTGCA+AGG | 0.598721 | 4_2:-61929637 | None:intergenic |
| TCATGAAGACCGTAGAGTTG+CGG | 0.599063 | 4_2:+61930054 | Msa0613240:CDS |
| TGGCACTAGTACAAATGCTG+AGG | 0.602305 | 4_2:-61930172 | None:intergenic |
| AAGTATGGAAAAGAATGGGA+TGG | 0.605962 | 4_2:+61926027 | Msa0613240:CDS |
| ATTGGTGGTCCTGTCATCAA+GGG | 0.609764 | 4_2:+61929306 | Msa0613240:CDS |
| CTTGGCATCAAACTCTCCAA+GGG | 0.613970 | 4_2:+61927334 | Msa0613240:CDS |
| TCTTTCTCTGTCATAATTGG+GGG | 0.619478 | 4_2:+61927509 | Msa0613240:CDS |
| TCCTTATGACTTGAATACAT+AGG | 0.622413 | 4_2:-61930094 | None:intergenic |
| GTGAATTCATGAAGCAACCA+TGG | 0.626836 | 4_2:-61929845 | None:intergenic |
| TAAGGCTGCTGAGATGGAAG+TGG | 0.643789 | 4_2:+61929034 | Msa0613240:CDS |
| GATTCTTTGAAGCTGCTAGG+AGG | 0.656943 | 4_2:+61927672 | Msa0613240:intron |
| TCGATGACAAGACAGCTGGA+AGG | 0.657356 | 4_2:-61927707 | None:intergenic |
| AGTTGGTTACATACGTCCTG+AGG | 0.662929 | 4_2:+61929904 | Msa0613240:CDS |
| GATTTACAATCTGCAAATGG+TGG | 0.664343 | 4_2:-61929155 | None:intergenic |
| TCAAATTGTGTTATGGTGCG+TGG | 0.670645 | 4_2:-61930235 | None:intergenic |
| CGTGGTGATTAAGAACCACA+GGG | 0.689826 | 4_2:-61930217 | None:intergenic |
| ACAGGACCACCAATATACCA+AGG | 0.706611 | 4_2:-61929297 | None:intergenic |
| ATTCACTGAGGATTTCTATG+GGG | 0.723967 | 4_2:+61929862 | Msa0613240:CDS |
| GATTTGCAACTTGAAAAGTG+GGG | 0.725632 | 4_2:+61929128 | Msa0613240:CDS |
| GTTGCTTCATGAATTCACTG+AGG | 0.733231 | 4_2:+61929850 | Msa0613240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTACAAATATAATTAA+GGG | - | chr4_2:61927874-61927893 | None:intergenic | 10.0% |
| !! | CTTAATTATATTTGTAATAT+GGG | + | chr4_2:61927873-61927892 | Msa0613240:intron | 10.0% |
| !! | GAAAATATTCTAAATATTAT+TGG | + | chr4_2:61928221-61928240 | Msa0613240:intron | 10.0% |
| !! | ATCAAATTATAAACTTAAAT+GGG | - | chr4_2:61928305-61928324 | None:intergenic | 10.0% |
| !!! | TTCATTAAAAAAGTATTATA+TGG | - | chr4_2:61928569-61928588 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAGAAAAAAATG+TGG | - | chr4_2:61928979-61928998 | None:intergenic | 10.0% |
| !! | AAATATTAAAAGTGAAATAA+TGG | - | chr4_2:61930293-61930312 | None:intergenic | 10.0% |
| !!! | ACAAATCAACATTTAAAATA+AGG | - | chr4_2:61926218-61926237 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTTT+CGG | + | chr4_2:61926291-61926310 | Msa0613240:intron | 15.0% |
| !!! | TTTATGTTTTATTTGATTAG+AGG | + | chr4_2:61926691-61926710 | Msa0613240:intron | 15.0% |
| !! | AAATAACAATTTATTGCAAT+CGG | - | chr4_2:61926818-61926837 | None:intergenic | 15.0% |
| !! | CCATATTACAAATATAATTA+AGG | - | chr4_2:61927875-61927894 | None:intergenic | 15.0% |
| !! | CCTTAATTATATTTGTAATA+TGG | + | chr4_2:61927872-61927891 | Msa0613240:intron | 15.0% |
| !!! | ATTTTCTTTTTTATATGAAG+AGG | - | chr4_2:61928207-61928226 | None:intergenic | 15.0% |
| !! | CATCAAATTATAAACTTAAA+TGG | - | chr4_2:61928306-61928325 | None:intergenic | 15.0% |
| !!! | TTTTCTAAAAAATATCTACT+TGG | + | chr4_2:61928984-61929003 | Msa0613240:intron | 15.0% |
| !! | AAGAAATAGTAATTACTGAT+CGG | - | chr4_2:61926172-61926191 | None:intergenic | 20.0% |
| !! | AAAATTAGAAAACAAGGTAA+TGG | - | chr4_2:61926587-61926606 | None:intergenic | 20.0% |
| !! | AACTCAAAAATTAGAAAACA+AGG | - | chr4_2:61926593-61926612 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAATTTTTGAGT+TGG | + | chr4_2:61926592-61926611 | Msa0613240:intron | 20.0% |
| !!! | TTGTTGATTTTTTTAAGTAC+TGG | + | chr4_2:61926917-61926936 | Msa0613240:intron | 20.0% |
| !!! | TTTATATTCTTTTTCTATGC+AGG | + | chr4_2:61927476-61927495 | Msa0613240:intron | 20.0% |
| !!! | TTCTGAAAAATTGTGATTTA+TGG | + | chr4_2:61927644-61927663 | Msa0613240:intron | 20.0% |
| !! | TTATATTTGTAATATGGGAT+AGG | + | chr4_2:61927878-61927897 | Msa0613240:intron | 20.0% |
| !! | TATATTTGTAATATGGGATA+GGG | + | chr4_2:61927879-61927898 | Msa0613240:intron | 20.0% |
| !! | TTTAGATTAAAGAAAATGGA+GGG | + | chr4_2:61928094-61928113 | Msa0613240:intron | 20.0% |
| !!! | TTACTCATTTTTAACTTGTA+AGG | + | chr4_2:61928392-61928411 | Msa0613240:intron | 20.0% |
| !! | TGCATAATTCTCATATATTT+GGG | - | chr4_2:61929529-61929548 | None:intergenic | 20.0% |
| !! | TTGCATAATTCTCATATATT+TGG | - | chr4_2:61929530-61929549 | None:intergenic | 20.0% |
| !! | TTAGGTCTATTTATATACTA+AGG | + | chr4_2:61929562-61929581 | Msa0613240:intron | 20.0% |
| !!! | TTTTCTTTGTTGTTGAAATA+TGG | - | chr4_2:61929731-61929750 | None:intergenic | 20.0% |
| !! | TAGATTATATGAAAATTCTG+AGG | - | chr4_2:61929801-61929820 | None:intergenic | 20.0% |
| !!! | ATATTTATTTTTCTCTCTGT+AGG | + | chr4_2:61929820-61929839 | Msa0613240:intron | 20.0% |
| !!! | TTTTGAGTTTCTCTAAAATT+GGG | + | chr4_2:61929978-61929997 | Msa0613240:intron | 20.0% |
| ! | TAAATGTGTTATCCTTGATT+TGG | + | chr4_2:61925945-61925964 | Msa0613240:CDS | 25.0% |
| !! | TGTTTTCCCAACAATTTTAA+GGG | - | chr4_2:61926061-61926080 | None:intergenic | 25.0% |
| ! | TCTTGTAAAACAAAAACTAG+TGG | + | chr4_2:61926358-61926377 | Msa0613240:intron | 25.0% |
| ! | TATTATGCTGCTAATATCTT+AGG | + | chr4_2:61926415-61926434 | Msa0613240:intron | 25.0% |
| ! | ATTATGCTGCTAATATCTTA+GGG | + | chr4_2:61926416-61926435 | Msa0613240:intron | 25.0% |
| ! | TACTTAAGAGAAAAAATGTG+AGG | + | chr4_2:61926474-61926493 | Msa0613240:intron | 25.0% |
| ! | TACGTTGTTTACAACAATAT+TGG | - | chr4_2:61926774-61926793 | None:intergenic | 25.0% |
| !! | AAGTGAATCCATCATTTTAT+AGG | + | chr4_2:61926965-61926984 | Msa0613240:intron | 25.0% |
| ! | ATATGGTTCCTATAAAATGA+TGG | - | chr4_2:61926976-61926995 | None:intergenic | 25.0% |
| ! | CAATTGAACAAAGATCATAT+CGG | - | chr4_2:61927083-61927102 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGAAGAGCAA+TGG | + | chr4_2:61927299-61927318 | Msa0613240:CDS | 25.0% |
| ! | TAAATCAATACCATCATGAA+AGG | - | chr4_2:61927381-61927400 | None:intergenic | 25.0% |
| ! | TATCACAAACAATGCAAAAA+AGG | - | chr4_2:61927431-61927450 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTGTCATAATT+GGG | + | chr4_2:61927507-61927526 | Msa0613240:CDS | 25.0% |
| ! | TTGTTTATCCTTGATTATTG+AGG | + | chr4_2:61927587-61927606 | Msa0613240:intron | 25.0% |
| ! | TGTTTATCCTTGATTATTGA+GGG | + | chr4_2:61927588-61927607 | Msa0613240:intron | 25.0% |
| ! | TAAATCAGAGTTAGAATAGA+AGG | - | chr4_2:61927750-61927769 | None:intergenic | 25.0% |
| !!! | AGGATTAAATTTTCAAGAGA+AGG | - | chr4_2:61927806-61927825 | None:intergenic | 25.0% |
| !!! | GTAGCTTATTTTTGTTGAAT+TGG | + | chr4_2:61927984-61928003 | Msa0613240:intron | 25.0% |
| !!! | TATTTTTGTTGAATTGGCAT+AGG | + | chr4_2:61927990-61928009 | Msa0613240:intron | 25.0% |
| !! | ATTTTTGTTGAATTGGCATA+GGG | + | chr4_2:61927991-61928010 | Msa0613240:intron | 25.0% |
| !! | CACATGCTATTTGATTAAAT+TGG | + | chr4_2:61928063-61928082 | Msa0613240:intron | 25.0% |
| ! | AGCCTTTAGATTAAAGAAAA+TGG | + | chr4_2:61928090-61928109 | Msa0613240:intron | 25.0% |
| !! | CTCCATTTTCTTTAATCTAA+AGG | - | chr4_2:61928095-61928114 | None:intergenic | 25.0% |
| ! | CTTTAGATTAAAGAAAATGG+AGG | + | chr4_2:61928093-61928112 | Msa0613240:intron | 25.0% |
| ! | TGTGTAATAATTACAAGGAT+GGG | - | chr4_2:61928164-61928183 | None:intergenic | 25.0% |
| ! | ATGTCTGTGTAATAATTACA+AGG | - | chr4_2:61928169-61928188 | None:intergenic | 25.0% |
| ! | CAGCTATGAAATAAATCTAA+TGG | + | chr4_2:61928328-61928347 | Msa0613240:intron | 25.0% |
| !!! | TTTTTAACTTGTAAGGATGA+TGG | + | chr4_2:61928399-61928418 | Msa0613240:intron | 25.0% |
| ! | TCATGGTTTCCAATTAATTT+AGG | + | chr4_2:61928673-61928692 | Msa0613240:intron | 25.0% |
| ! | ATTTCCTTTATTGGTATGTA+CGG | + | chr4_2:61929212-61929231 | Msa0613240:intron | 25.0% |
| ! | TAGCATTATGATTTATTGCA+GGG | + | chr4_2:61929250-61929269 | Msa0613240:intron | 25.0% |
| ! | CATAATTCTCATATATTTGG+GGG | - | chr4_2:61929527-61929546 | None:intergenic | 25.0% |
| ! | GCATAATTCTCATATATTTG+GGG | - | chr4_2:61929528-61929547 | None:intergenic | 25.0% |
| !! | ATGCAATCTTAAACAGTTTT+AGG | + | chr4_2:61929544-61929563 | Msa0613240:intron | 25.0% |
| ! | TCTATTTATATACTAAGGCT+CGG | + | chr4_2:61929567-61929586 | Msa0613240:intron | 25.0% |
| !!! | AGGAAGAGGTATTTTTAAAA+TGG | + | chr4_2:61929685-61929704 | Msa0613240:CDS | 25.0% |
| !!! | AGTTGTTTATTTTAAACCTC+TGG | + | chr4_2:61929761-61929780 | Msa0613240:intron | 25.0% |
| ! | GCATGATTTAGAAATAATGT+AGG | - | chr4_2:61929941-61929960 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTTTCTCTAAAAT+TGG | + | chr4_2:61929977-61929996 | Msa0613240:intron | 25.0% |
| !!! | CTCATAGTACTGATTTTATT+AGG | + | chr4_2:61930135-61930154 | Msa0613240:exon | 25.0% |
| !!! | TAATACAACAAAGCTGTTTT+TGG | - | chr4_2:61930195-61930214 | None:intergenic | 25.0% |
| ! | TTACACATCAAATTGTGTTA+TGG | - | chr4_2:61930245-61930264 | None:intergenic | 25.0% |
| ! | TGCATAGATAGTAATGAAAA+AGG | + | chr4_2:61930267-61930286 | Msa0613240:three_prime_UTR | 25.0% |
| ! | TAGGAAAGTATGGAAAAGAA+TGG | + | chr4_2:61926022-61926041 | Msa0613240:CDS | 30.0% |
| ! | AGGAAAGTATGGAAAAGAAT+GGG | + | chr4_2:61926023-61926042 | Msa0613240:CDS | 30.0% |
| AGAGAAACCCTTAAAATTGT+TGG | + | chr4_2:61926051-61926070 | Msa0613240:CDS | 30.0% | |
| GAGAAACCCTTAAAATTGTT+GGG | + | chr4_2:61926052-61926071 | Msa0613240:CDS | 30.0% | |
| ! | GTGTTTTCCCAACAATTTTA+AGG | - | chr4_2:61926062-61926081 | None:intergenic | 30.0% |
| ! | GTGGTATAAAAATGCACTTT+TGG | + | chr4_2:61926377-61926396 | Msa0613240:intron | 30.0% |
| TTATGCTGCTAATATCTTAG+GGG | + | chr4_2:61926417-61926436 | Msa0613240:intron | 30.0% | |
| CTCTTAAGTAAATCTTGCAA+TGG | - | chr4_2:61926464-61926483 | None:intergenic | 30.0% | |
| TCTTGTGATCTTAGTTGAAT+AGG | + | chr4_2:61926620-61926639 | Msa0613240:intron | 30.0% | |
| ! | CTTTTTAGACGTATAACTCT+GGG | + | chr4_2:61926721-61926740 | Msa0613240:intron | 30.0% |
| ! | TTTTTAGACGTATAACTCTG+GGG | + | chr4_2:61926722-61926741 | Msa0613240:intron | 30.0% |
| TGTTTACAACAATATTGGTC+TGG | - | chr4_2:61926769-61926788 | None:intergenic | 30.0% | |
| ATCTGTTAATGAATTTCCCA+AGG | - | chr4_2:61927012-61927031 | None:intergenic | 30.0% | |
| CGATATGATCTTTGTTCAAT+TGG | + | chr4_2:61927081-61927100 | Msa0613240:intron | 30.0% | |
| ACGAAACATATGATACACAA+AGG | - | chr4_2:61927110-61927129 | None:intergenic | 30.0% | |
| !! | CTTTGAAGTACAAGTTCAAT+TGG | - | chr4_2:61927192-61927211 | None:intergenic | 30.0% |
| CTTGTACTTCAAAGTTATGA+AGG | + | chr4_2:61927198-61927217 | Msa0613240:intron | 30.0% | |
| !! | TTTAGCTTGATTCTCATGTT+AGG | + | chr4_2:61927237-61927256 | Msa0613240:intron | 30.0% |
| CAAATGTTTAATCAACCGAT+TGG | - | chr4_2:61927291-61927310 | None:intergenic | 30.0% | |
| ! | ACCATCATGAAAGGATATTT+TGG | - | chr4_2:61927372-61927391 | None:intergenic | 30.0% |
| ! | TATTCTTTTTCTATGCAGGA+TGG | + | chr4_2:61927480-61927499 | Msa0613240:intron | 30.0% |
| GATTCTTTCTCTGTCATAAT+TGG | + | chr4_2:61927506-61927525 | Msa0613240:CDS | 30.0% | |
| TTCTTTCTCTGTCATAATTG+GGG | + | chr4_2:61927508-61927527 | Msa0613240:CDS | 30.0% | |
| !!! | TCTTTTTGAAGTGTAACGAT+AGG | - | chr4_2:61927826-61927845 | None:intergenic | 30.0% |
| TTGCTTATTTGTGCTTAATC+TGG | + | chr4_2:61927950-61927969 | Msa0613240:intron | 30.0% | |
| ! | TTTTTGTTGAATTGGCATAG+GGG | + | chr4_2:61927992-61928011 | Msa0613240:intron | 30.0% |
| ATTAAAGAAAATGGAGGGAT+AGG | + | chr4_2:61928099-61928118 | Msa0613240:intron | 30.0% | |
| CTGTGTAATAATTACAAGGA+TGG | - | chr4_2:61928165-61928184 | None:intergenic | 30.0% | |
| TGAAATAAATCTAATGGCTG+AGG | + | chr4_2:61928334-61928353 | Msa0613240:intron | 30.0% | |
| !! | TGTTGTTATGTTGATAGCTT+GGG | + | chr4_2:61928359-61928378 | Msa0613240:intron | 30.0% |
| TATTTGATGAGTGCTTATTC+AGG | + | chr4_2:61928463-61928482 | Msa0613240:intron | 30.0% | |
| TGATTGATTAACAGAGAAAG+CGG | + | chr4_2:61928499-61928518 | Msa0613240:intron | 30.0% | |
| TGAGCACACATACAATAAAT+AGG | - | chr4_2:61928604-61928623 | None:intergenic | 30.0% | |
| TATTTATTGTATGTGTGCTC+AGG | + | chr4_2:61928603-61928622 | Msa0613240:intron | 30.0% | |
| TGGACAAGACCTAAATTAAT+TGG | - | chr4_2:61928685-61928704 | None:intergenic | 30.0% | |
| ! | ACCATGTTTGAAGTATCAAA+GGG | - | chr4_2:61928756-61928775 | None:intergenic | 30.0% |
| ! | AACCATGTTTGAAGTATCAA+AGG | - | chr4_2:61928757-61928776 | None:intergenic | 30.0% |
| GATACTTCAAACATGGTTTA+TGG | + | chr4_2:61928759-61928778 | Msa0613240:intron | 30.0% | |
| TGTGCATATCTTCTTATAAC+TGG | + | chr4_2:61928836-61928855 | Msa0613240:intron | 30.0% | |
| !! | GTTCAATCCGTATTACTTTT+TGG | + | chr4_2:61928877-61928896 | Msa0613240:intron | 30.0% |
| GATTCAGCCAAAAAGTAATA+CGG | - | chr4_2:61928887-61928906 | None:intergenic | 30.0% | |
| !! | TTCAAGTTGCAAATCAAGTA+GGG | - | chr4_2:61929123-61929142 | None:intergenic | 30.0% |
| !! | TTTCAAGTTGCAAATCAAGT+AGG | - | chr4_2:61929124-61929143 | None:intergenic | 30.0% |
| !! | TTGATTTGCAACTTGAAAAG+TGG | + | chr4_2:61929126-61929145 | Msa0613240:CDS | 30.0% |
| ! | TGATTTGCAACTTGAAAAGT+GGG | + | chr4_2:61929127-61929146 | Msa0613240:CDS | 30.0% |
| AATACCGTACATACCAATAA+AGG | - | chr4_2:61929219-61929238 | None:intergenic | 30.0% | |
| CTAGCATTATGATTTATTGC+AGG | + | chr4_2:61929249-61929268 | Msa0613240:intron | 30.0% | |
| AGCATTATGATTTATTGCAG+GGG | + | chr4_2:61929251-61929270 | Msa0613240:intron | 30.0% | |
| AAAACTGAAAACAAACCTGT+AGG | - | chr4_2:61929363-61929382 | None:intergenic | 30.0% | |
| !! | TTTTCACTTATTTCTTGTGC+TGG | + | chr4_2:61929379-61929398 | Msa0613240:intron | 30.0% |
| GTTATCCCAATTCTATTTAG+TGG | + | chr4_2:61929460-61929479 | Msa0613240:intron | 30.0% | |
| AGCAACCACTAAATAGAATT+GGG | - | chr4_2:61929468-61929487 | None:intergenic | 30.0% | |
| AAGCAACCACTAAATAGAAT+TGG | - | chr4_2:61929469-61929488 | None:intergenic | 30.0% | |
| ! | TTCAGCTAATTTGTCAACAA+AGG | + | chr4_2:61929601-61929620 | Msa0613240:intron | 30.0% |
| ! | TTTAAAATGGTGATGAGCAT+TGG | + | chr4_2:61929698-61929717 | Msa0613240:CDS | 30.0% |
| AATTCACTGAGGATTTCTAT+GGG | + | chr4_2:61929861-61929880 | Msa0613240:CDS | 30.0% | |
| TCCTATGTATTCAAGTCATA+AGG | + | chr4_2:61930093-61930112 | Msa0613240:CDS | 30.0% | |
| TCCTTATGACTTGAATACAT+AGG | - | chr4_2:61930097-61930116 | None:intergenic | 30.0% | |
| !! | TGTGTTATCCTTGATTTGGA+TGG | + | chr4_2:61925949-61925968 | Msa0613240:CDS | 35.0% |
| !! | CATAGTTTGCAACGTTTTGA+AGG | + | chr4_2:61925993-61926012 | Msa0613240:CDS | 35.0% |
| !!! | AACGTTTTGAAGGTTTCGTT+AGG | + | chr4_2:61926003-61926022 | Msa0613240:CDS | 35.0% |
| AAGGTTTCGTTAGGAAAGTA+TGG | + | chr4_2:61926012-61926031 | Msa0613240:CDS | 35.0% | |
| AAGTATGGAAAAGAATGGGA+TGG | + | chr4_2:61926027-61926046 | Msa0613240:CDS | 35.0% | |
| TCTGCTGTTGTTGAAGATTA+TGG | + | chr4_2:61926096-61926115 | Msa0613240:intron | 35.0% | |
| CTCGGAAACAAATTCAATTG+GGG | - | chr4_2:61926133-61926152 | None:intergenic | 35.0% | |
| GCTCGGAAACAAATTCAATT+GGG | - | chr4_2:61926134-61926153 | None:intergenic | 35.0% | |
| AGCTCGGAAACAAATTCAAT+TGG | - | chr4_2:61926135-61926154 | None:intergenic | 35.0% | |
| AATTACTGATCGGAGAATTG+CGG | - | chr4_2:61926162-61926181 | None:intergenic | 35.0% | |
| ! | TAGTCTGTCATTGTTTTCGT+AGG | + | chr4_2:61926553-61926572 | Msa0613240:intron | 35.0% |
| TAGTTGAATAGGCTATTCGT+TGG | + | chr4_2:61926631-61926650 | Msa0613240:intron | 35.0% | |
| AGTTGAATAGGCTATTCGTT+GGG | + | chr4_2:61926632-61926651 | Msa0613240:intron | 35.0% | |
| CCAGAGTTATACGTCTAAAA+AGG | - | chr4_2:61926723-61926742 | None:intergenic | 35.0% | |
| ! | CCTTTTTAGACGTATAACTC+TGG | + | chr4_2:61926720-61926739 | Msa0613240:intron | 35.0% |
| ! | TTTTAGACGTATAACTCTGG+GGG | + | chr4_2:61926723-61926742 | Msa0613240:intron | 35.0% |
| AAGGAAAAGAGGATTGGATA+TGG | - | chr4_2:61926993-61927012 | None:intergenic | 35.0% | |
| ! | ATATCCAATCCTCTTTTCCT+TGG | + | chr4_2:61926992-61927011 | Msa0613240:intron | 35.0% |
| ! | TATCCAATCCTCTTTTCCTT+GGG | + | chr4_2:61926993-61927012 | Msa0613240:intron | 35.0% |
| ATGAATTTCCCAAGGAAAAG+AGG | - | chr4_2:61927004-61927023 | None:intergenic | 35.0% | |
| ! | GGGACAAATTTTCTAGATGT+AGG | - | chr4_2:61927041-61927060 | None:intergenic | 35.0% |
| ! | GATCATGAACTAATTGACTC+GGG | - | chr4_2:61927061-61927080 | None:intergenic | 35.0% |
| GGATCATGAACTAATTGACT+CGG | - | chr4_2:61927062-61927081 | None:intergenic | 35.0% | |
| ! | TGCAATATTAAAGCACTTCC+TGG | + | chr4_2:61927263-61927282 | Msa0613240:CDS | 35.0% |
| GCCAAAATATCCTTTCATGA+TGG | + | chr4_2:61927368-61927387 | Msa0613240:CDS | 35.0% | |
| TCTTTCTCTGTCATAATTGG+GGG | + | chr4_2:61927509-61927528 | Msa0613240:CDS | 35.0% | |
| ! | ATTTTGCATCTCACATGTCA+GGG | - | chr4_2:61927562-61927581 | None:intergenic | 35.0% |
| ! | TATTTTGCATCTCACATGTC+AGG | - | chr4_2:61927563-61927582 | None:intergenic | 35.0% |
| CAAGTAACCCTCAATAATCA+AGG | - | chr4_2:61927598-61927617 | None:intergenic | 35.0% | |
| TCTAACTCTGATTTATGTGC+CGG | + | chr4_2:61927755-61927774 | Msa0613240:intron | 35.0% | |
| TAATATGGGATAGGGTCAAA+TGG | + | chr4_2:61927887-61927906 | Msa0613240:intron | 35.0% | |
| ACAAATAAGCAAGCGTGATT+TGG | - | chr4_2:61927942-61927961 | None:intergenic | 35.0% | |
| CTTATTTGTGCTTAATCTGG+TGG | + | chr4_2:61927953-61927972 | Msa0613240:intron | 35.0% | |
| !! | CTGTTGTTATGTTGATAGCT+TGG | + | chr4_2:61928358-61928377 | Msa0613240:intron | 35.0% |
| GATTGATTAACAGAGAAAGC+GGG | + | chr4_2:61928500-61928519 | Msa0613240:intron | 35.0% | |
| ! | TTCTTTTTGTGACGTCTTCA+TGG | + | chr4_2:61928656-61928675 | Msa0613240:intron | 35.0% |
| ! | CTTTTGCAGATAGTTGTAAC+TGG | - | chr4_2:61928705-61928724 | None:intergenic | 35.0% |
| ACCCTTTGATACTTCAAACA+TGG | + | chr4_2:61928752-61928771 | Msa0613240:intron | 35.0% | |
| TAAAGAGATGAGACTGTTTC+GGG | - | chr4_2:61929076-61929095 | None:intergenic | 35.0% | |
| GTAAAGAGATGAGACTGTTT+CGG | - | chr4_2:61929077-61929096 | None:intergenic | 35.0% | |
| GATTTGCAACTTGAAAAGTG+GGG | + | chr4_2:61929128-61929147 | Msa0613240:CDS | 35.0% | |
| GATTTACAATCTGCAAATGG+TGG | - | chr4_2:61929158-61929177 | None:intergenic | 35.0% | |
| CAGGATTTACAATCTGCAAA+TGG | - | chr4_2:61929161-61929180 | None:intergenic | 35.0% | |
| ! | AGTGTTATCTCAAGGTATTC+AGG | - | chr4_2:61929180-61929199 | None:intergenic | 35.0% |
| ! | AGACACAAAGTGTTATCTCA+AGG | - | chr4_2:61929188-61929207 | None:intergenic | 35.0% |
| TGTCTCTGCATTTCCTTTAT+TGG | + | chr4_2:61929203-61929222 | Msa0613240:intron | 35.0% | |
| ATTATGATTTATTGCAGGGG+TGG | + | chr4_2:61929254-61929273 | Msa0613240:intron | 35.0% | |
| ACGTAGAGAGAAGCAAAATA+TGG | + | chr4_2:61929414-61929433 | Msa0613240:intron | 35.0% | |
| CGTAGAGAGAAGCAAAATAT+GGG | + | chr4_2:61929415-61929434 | Msa0613240:intron | 35.0% | |
| TAATTCATAATGATGCCCTG+AGG | + | chr4_2:61929438-61929457 | Msa0613240:intron | 35.0% | |
| ATAGAATTGGGATAACCTCA+GGG | - | chr4_2:61929456-61929475 | None:intergenic | 35.0% | |
| AATAGAATTGGGATAACCTC+AGG | - | chr4_2:61929457-61929476 | None:intergenic | 35.0% | |
| ! | TAAGCTTGAGATCCTGATTT+TGG | + | chr4_2:61929495-61929514 | Msa0613240:intron | 35.0% |
| !!! | TGCAGGAGTTTATTTTGGTT+GGG | + | chr4_2:61929652-61929671 | Msa0613240:CDS | 35.0% |
| GGTAAAATAGTTATAGCCAG+AGG | - | chr4_2:61929780-61929799 | None:intergenic | 35.0% | |
| GAATTCACTGAGGATTTCTA+TGG | + | chr4_2:61929860-61929879 | Msa0613240:CDS | 35.0% | |
| ATTCACTGAGGATTTCTATG+GGG | + | chr4_2:61929862-61929881 | Msa0613240:CDS | 35.0% | |
| CAAAAGATGAAGAACATGAC+AGG | - | chr4_2:61929963-61929982 | None:intergenic | 35.0% | |
| CTTAGCAATCAAGCTTTCAA+GGG | - | chr4_2:61930032-61930051 | None:intergenic | 35.0% | |
| TCTTAGCAATCAAGCTTTCA+AGG | - | chr4_2:61930033-61930052 | None:intergenic | 35.0% | |
| ! | CTTTGTTGTATTATTCCCTG+TGG | + | chr4_2:61930202-61930221 | Msa0613240:three_prime_UTR | 35.0% |
| TTTAATATTTGACTGCCTGC+TGG | + | chr4_2:61930303-61930322 | Msa0613240:three_prime_UTR | 35.0% | |
| AATTGTTGGGAAAACACCGT+TGG | + | chr4_2:61926065-61926084 | Msa0613240:intron | 40.0% | |
| ACAAATTCAATTGGGGAGCA+AGG | - | chr4_2:61926126-61926145 | None:intergenic | 40.0% | |
| TCGGTATTCAATACACATCG+AGG | + | chr4_2:61926310-61926329 | Msa0613240:intron | 40.0% | |
| GTTGAATAGGCTATTCGTTG+GGG | + | chr4_2:61926633-61926652 | Msa0613240:intron | 40.0% | |
| TTTCCCAAGGAAAAGAGGAT+TGG | - | chr4_2:61926999-61927018 | None:intergenic | 40.0% | |
| AACCAAGTAACTGCGTTTAC+AGG | - | chr4_2:61927162-61927181 | None:intergenic | 40.0% | |
| TGTAAACGCAGTTACTTGGT+TGG | + | chr4_2:61927161-61927180 | Msa0613240:intron | 40.0% | |
| AGCTTGATTCTCATGTTAGG+TGG | + | chr4_2:61927240-61927259 | Msa0613240:intron | 40.0% | |
| TTCAGAAACCTTACGCTTCT+TGG | + | chr4_2:61927402-61927421 | Msa0613240:intron | 40.0% | |
| ! | TTTTGCATCTCACATGTCAG+GGG | - | chr4_2:61927561-61927580 | None:intergenic | 40.0% |
| !! | TCAGATTCTTTGAAGCTGCT+AGG | + | chr4_2:61927669-61927688 | Msa0613240:intron | 40.0% |
| CATCAAAGAAGACTTGAAGC+CGG | - | chr4_2:61927777-61927796 | None:intergenic | 40.0% | |
| GTCTCTCACTATCTCTTTCT+TGG | - | chr4_2:61928020-61928039 | None:intergenic | 40.0% | |
| GAAAATGGAGGGATAGGATT+TGG | + | chr4_2:61928105-61928124 | Msa0613240:intron | 40.0% | |
| AAAAGTCCAGACAGAATCAC+TGG | - | chr4_2:61928274-61928293 | None:intergenic | 40.0% | |
| !!! | AGGATGATGGCTTGTTTTTG+AGG | + | chr4_2:61928412-61928431 | Msa0613240:intron | 40.0% |
| !!! | TGATGGCTTGTTTTTGAGGA+AGG | + | chr4_2:61928416-61928435 | Msa0613240:intron | 40.0% |
| GTATCAAAGGGTAGACTCAT+AGG | - | chr4_2:61928744-61928763 | None:intergenic | 40.0% | |
| ! | TGAATCCTCCCCTTTTGTTA+TGG | + | chr4_2:61928901-61928920 | Msa0613240:intron | 40.0% |
| AGTGCAGACCATAACAAAAG+GGG | - | chr4_2:61928912-61928931 | None:intergenic | 40.0% | |
| GAGTGCAGACCATAACAAAA+GGG | - | chr4_2:61928913-61928932 | None:intergenic | 40.0% | |
| TGAGTGCAGACCATAACAAA+AGG | - | chr4_2:61928914-61928933 | None:intergenic | 40.0% | |
| CCAATATACCAAGGATCTAC+AGG | - | chr4_2:61929291-61929310 | None:intergenic | 40.0% | |
| CCTGTAGATCCTTGGTATAT+TGG | + | chr4_2:61929288-61929307 | Msa0613240:CDS | 40.0% | |
| GTAGATCCTTGGTATATTGG+TGG | + | chr4_2:61929291-61929310 | Msa0613240:CDS | 40.0% | |
| TGGGGGAAAATTCCAAAATC+AGG | - | chr4_2:61929510-61929529 | None:intergenic | 40.0% | |
| ! | CATCCTGCAGGAGTTTATTT+TGG | + | chr4_2:61929647-61929666 | Msa0613240:CDS | 40.0% |
| CAACCAAAATAAACTCCTGC+AGG | - | chr4_2:61929653-61929672 | None:intergenic | 40.0% | |
| !!! | CTGCAGGAGTTTATTTTGGT+TGG | + | chr4_2:61929651-61929670 | Msa0613240:CDS | 40.0% |
| !! | AAATGGTGATGAGCATTGGT+TGG | + | chr4_2:61929702-61929721 | Msa0613240:CDS | 40.0% |
| ! | TTTTCTCTCTGTAGGAACCA+TGG | + | chr4_2:61929828-61929847 | Msa0613240:intron | 40.0% |
| GTGAATTCATGAAGCAACCA+TGG | - | chr4_2:61929848-61929867 | None:intergenic | 40.0% | |
| GTTGCTTCATGAATTCACTG+AGG | + | chr4_2:61929850-61929869 | Msa0613240:CDS | 40.0% | |
| GAACTGAAGCTGGTTATAGT+TGG | + | chr4_2:61929887-61929906 | Msa0613240:CDS | 40.0% | |
| TCAAATTGTGTTATGGTGCG+TGG | - | chr4_2:61930238-61930257 | None:intergenic | 40.0% | |
| TGCTAATATCTTAGGGGCCT+AGG | + | chr4_2:61926423-61926442 | Msa0613240:intron | 45.0% | |
| GCTAATATCTTAGGGGCCTA+GGG | + | chr4_2:61926424-61926443 | Msa0613240:intron | 45.0% | |
| CTAATATCTTAGGGGCCTAG+GGG | + | chr4_2:61926425-61926444 | Msa0613240:intron | 45.0% | |
| ! | CTATTCGTTGGGGCATTTCA+GGG | + | chr4_2:61926643-61926662 | Msa0613240:intron | 45.0% |
| TCTGGGGGTTTGATGTTGTA+TGG | + | chr4_2:61926738-61926757 | Msa0613240:intron | 45.0% | |
| CTGGGGGTTTGATGTTGTAT+GGG | + | chr4_2:61926739-61926758 | Msa0613240:intron | 45.0% | |
| CTCCTGTAAACGCAGTTACT+TGG | + | chr4_2:61927157-61927176 | Msa0613240:intron | 45.0% | |
| TTAATCAACCGATTGGCACC+AGG | - | chr4_2:61927284-61927303 | None:intergenic | 45.0% | |
| GAAGAGCAATGGAGTTCCAA+TGG | + | chr4_2:61927310-61927329 | Msa0613240:CDS | 45.0% | |
| CTTGGCATCAAACTCTCCAA+GGG | + | chr4_2:61927334-61927353 | Msa0613240:CDS | 45.0% | |
| ! | AAAGGAGTCCAAGAAGCGTA+AGG | - | chr4_2:61927413-61927432 | None:intergenic | 45.0% |
| !! | GATTCTTTGAAGCTGCTAGG+AGG | + | chr4_2:61927672-61927691 | Msa0613240:intron | 45.0% |
| TTGAAGCTGCTAGGAGGTTA+AGG | + | chr4_2:61927678-61927697 | Msa0613240:CDS | 45.0% | |
| CGGCTTCAAGTCTTCTTTGA+TGG | + | chr4_2:61927775-61927794 | Msa0613240:intron | 45.0% | |
| TGCTTAATCTGGTGGCTTAC+AGG | + | chr4_2:61927961-61927980 | Msa0613240:intron | 45.0% | |
| GCTTAATCTGGTGGCTTACA+GGG | + | chr4_2:61927962-61927981 | Msa0613240:intron | 45.0% | |
| GAGATAGTGAGAGACTCTGA+AGG | + | chr4_2:61928025-61928044 | Msa0613240:intron | 45.0% | |
| ! | CTCTGAAGGAGAGACATAGT+AGG | + | chr4_2:61928039-61928058 | Msa0613240:intron | 45.0% |
| GGATGGGATCAATTGACATC+AGG | - | chr4_2:61928148-61928167 | None:intergenic | 45.0% | |
| ! | AGGGGGTGTAGGATGTTTAA+CGG | - | chr4_2:61928251-61928270 | None:intergenic | 45.0% |
| ! | AACAGAGAAAGCGGGTGTTT+TGG | + | chr4_2:61928508-61928527 | Msa0613240:intron | 45.0% |
| ! | ACAGAGAAAGCGGGTGTTTT+GGG | + | chr4_2:61928509-61928528 | Msa0613240:intron | 45.0% |
| TCTCTTTACTGCAGCAGATG+AGG | + | chr4_2:61929088-61929107 | Msa0613240:CDS | 45.0% | |
| GAACTTTGCCTGTAGATCCT+TGG | + | chr4_2:61929280-61929299 | Msa0613240:CDS | 45.0% | |
| ACAGGACCACCAATATACCA+AGG | - | chr4_2:61929300-61929319 | None:intergenic | 45.0% | |
| ! | TATTGGTGGTCCTGTCATCA+AGG | + | chr4_2:61929305-61929324 | Msa0613240:CDS | 45.0% |
| ! | ATTGGTGGTCCTGTCATCAA+GGG | + | chr4_2:61929306-61929325 | Msa0613240:CDS | 45.0% |
| AAAGTTCTCGGGATTCCTAC+AGG | + | chr4_2:61929345-61929364 | Msa0613240:CDS | 45.0% | |
| !!! | GGAGTTTATTTTGGTTGGGC+TGG | + | chr4_2:61929656-61929675 | Msa0613240:CDS | 45.0% |
| ! | TTTGGTTGGGCTGGATTATC+AGG | + | chr4_2:61929665-61929684 | Msa0613240:CDS | 45.0% |
| AGTTGGTTACATACGTCCTG+AGG | + | chr4_2:61929904-61929923 | Msa0613240:CDS | 45.0% | |
| GTTACATACGTCCTGAGGTA+TGG | + | chr4_2:61929909-61929928 | Msa0613240:intron | 45.0% | |
| GCAATCAAGCTTTCAAGGGT+TGG | - | chr4_2:61930028-61930047 | None:intergenic | 45.0% | |
| TCATGAAGACCGTAGAGTTG+CGG | + | chr4_2:61930054-61930073 | Msa0613240:CDS | 45.0% | |
| TGGCACTAGTACAAATGCTG+AGG | - | chr4_2:61930175-61930194 | None:intergenic | 45.0% | |
| CGTGGTGATTAAGAACCACA+GGG | - | chr4_2:61930220-61930239 | None:intergenic | 45.0% | |
| !!! | AATTTTTTACTTAATTTAAA+AGG | + | chr4_2:61928792-61928811 | Msa0613240:intron | 5.0% |
| GCAACGTGCCATCCAAATCA+AGG | - | chr4_2:61925960-61925979 | None:intergenic | 50.0% | |
| ACAGCAGAAGCAGCTTCCAA+CGG | - | chr4_2:61926084-61926103 | None:intergenic | 50.0% | |
| GGAGAATTGCGGAGAAAGCT+CGG | - | chr4_2:61926151-61926170 | None:intergenic | 50.0% | |
| CGTGTCAGTCTGTGCTTCAT+AGG | - | chr4_2:61926243-61926262 | None:intergenic | 50.0% | |
| ! | GCTATTCGTTGGGGCATTTC+AGG | + | chr4_2:61926642-61926661 | Msa0613240:intron | 50.0% |
| ! | AAGCACTTCCTGGTGCCAAT+CGG | + | chr4_2:61927273-61927292 | Msa0613240:CDS | 50.0% |
| CAATGGAGTTCCAATGGCCT+TGG | + | chr4_2:61927316-61927335 | Msa0613240:CDS | 50.0% | |
| GAGTTTGATGCCAAGGCCAT+TGG | - | chr4_2:61927329-61927348 | None:intergenic | 50.0% | |
| CCTTGGAGAGTTTGATGCCA+AGG | - | chr4_2:61927336-61927355 | None:intergenic | 50.0% | |
| CCTTGGCATCAAACTCTCCA+AGG | + | chr4_2:61927333-61927352 | Msa0613240:CDS | 50.0% | |
| !! | TTGGCATCGATGCTTTCCCT+TGG | - | chr4_2:61927353-61927372 | None:intergenic | 50.0% |
| TCGATGACAAGACAGCTGGA+AGG | - | chr4_2:61927710-61927729 | None:intergenic | 50.0% | |
| GTCTTCGATGACAAGACAGC+TGG | - | chr4_2:61927714-61927733 | None:intergenic | 50.0% | |
| TCCAGACAGAATCACTGGAG+GGG | - | chr4_2:61928269-61928288 | None:intergenic | 50.0% | |
| GTCCAGACAGAATCACTGGA+GGG | - | chr4_2:61928270-61928289 | None:intergenic | 50.0% | |
| AGTCCAGACAGAATCACTGG+AGG | - | chr4_2:61928271-61928290 | None:intergenic | 50.0% | |
| GCAGACCATAACAAAAGGGG+AGG | - | chr4_2:61928909-61928928 | None:intergenic | 50.0% | |
| CTACTTGGCTACTTCAGACC+CGG | + | chr4_2:61928999-61929018 | Msa0613240:intron | 50.0% | |
| AGCCTTACCTGCAGTAACAC+CGG | - | chr4_2:61929021-61929040 | None:intergenic | 50.0% | |
| TAAGGCTGCTGAGATGGAAG+TGG | + | chr4_2:61929034-61929053 | Msa0613240:CDS | 50.0% | |
| TGAGACTGTTTCGGGAGTGA+TGG | - | chr4_2:61929068-61929087 | None:intergenic | 50.0% | |
| GGTCCTGTCATCAAGGGATT+TGG | + | chr4_2:61929312-61929331 | Msa0613240:CDS | 50.0% | |
| ! | CGACCAAATCCCTTGATGAC+AGG | - | chr4_2:61929318-61929337 | None:intergenic | 50.0% |
| ! | GTCATCAAGGGATTTGGTCG+TGG | + | chr4_2:61929318-61929337 | Msa0613240:CDS | 50.0% |
| ! | TGGGCTGGATTATCAGGAAG+AGG | + | chr4_2:61929671-61929690 | Msa0613240:CDS | 50.0% |
| CTATGGGGAAGAACTGAAGC+TGG | + | chr4_2:61929877-61929896 | Msa0613240:CDS | 50.0% | |
| AATTGGGCACTCTGCATAGC+AGG | + | chr4_2:61929994-61930013 | Msa0613240:intron | 50.0% | |
| GCGTGGTGATTAAGAACCAC+AGG | - | chr4_2:61930221-61930240 | None:intergenic | 50.0% | |
| TTGACTGCCTGCTGGCAATT+CGG | + | chr4_2:61930311-61930330 | Msa0613240:three_prime_UTR | 50.0% | |
| GGCACGTTGCTCAACACAGA+TGG | + | chr4_2:61925970-61925989 | Msa0613240:CDS | 55.0% | |
| GGTGAATCTAGTGTGCCCCT+AGG | - | chr4_2:61926443-61926462 | None:intergenic | 55.0% | |
| GCATCTCACATGTCAGGGGA+AGG | - | chr4_2:61927557-61927576 | None:intergenic | 55.0% | |
| ! | AGAATCACTGGAGGGGGTGT+AGG | - | chr4_2:61928262-61928281 | None:intergenic | 55.0% |
| CCAGACAGAATCACTGGAGG+GGG | - | chr4_2:61928268-61928287 | None:intergenic | 55.0% | |
| !! | TTCAGACCCGGTGTTACTGC+AGG | + | chr4_2:61929011-61929030 | Msa0613240:intron | 55.0% |
| !! | ACCCGGTGTTACTGCAGGTA+AGG | + | chr4_2:61929016-61929035 | Msa0613240:CDS | 55.0% |
| GCCTTACCTGCAGTAACACC+GGG | - | chr4_2:61929020-61929039 | None:intergenic | 55.0% | |
| TGCAGGTAAGGCTGCTGAGA+TGG | + | chr4_2:61929028-61929047 | Msa0613240:CDS | 55.0% | |
| GGTCGTGGCTCGAAAGTTCT+CGG | + | chr4_2:61929333-61929352 | Msa0613240:CDS | 55.0% | |
| GTCGTGGCTCGAAAGTTCTC+GGG | + | chr4_2:61929334-61929353 | Msa0613240:CDS | 55.0% | |
| GGGGGAGACGAAGTTCGAAC+AGG | + | chr4_2:61927527-61927546 | Msa0613240:CDS | 60.0% | |
| CCCCCTCCAGTGATTCTGTC+TGG | + | chr4_2:61928265-61928284 | Msa0613240:intron | 60.0% | |
| ! | CTCCTTGCAGAGCATCCTGC+AGG | + | chr4_2:61929635-61929654 | Msa0613240:CDS | 60.0% |
| CTCCTGCAGGATGCTCTGCA+AGG | - | chr4_2:61929640-61929659 | None:intergenic | 60.0% | |
| GTAGGCTGCAGCCATACCTC+AGG | - | chr4_2:61929923-61929942 | None:intergenic | 60.0% | |
| GAGCGCTCTCCGCAACTCTA+CGG | - | chr4_2:61930066-61930085 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61925919 | 61930335 | 61925919 | ID=Msa0613240;Name=Msa0613240 |
| chr4_2 | mRNA | 61925919 | 61930335 | 61925919 | ID=Msa0613240-mRNA-1;Parent=Msa0613240;Name=Msa0613240-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.87|0.88|1|0.87|0.88|9|194|347 |
| chr4_2 | exon | 61925919 | 61926082 | 61925919 | ID=Msa0613240-mRNA-1:exon:16978;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61927259 | 61927389 | 61927259 | ID=Msa0613240-mRNA-1:exon:16979;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61927498 | 61927567 | 61927498 | ID=Msa0613240-mRNA-1:exon:16980;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61927673 | 61927738 | 61927673 | ID=Msa0613240-mRNA-1:exon:16981;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61929016 | 61929170 | 61929016 | ID=Msa0613240-mRNA-1:exon:16982;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61929271 | 61929366 | 61929271 | ID=Msa0613240-mRNA-1:exon:16983;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61929606 | 61929757 | 61929606 | ID=Msa0613240-mRNA-1:exon:16984;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61929842 | 61929925 | 61929842 | ID=Msa0613240-mRNA-1:exon:16985;Parent=Msa0613240-mRNA-1 |
| chr4_2 | exon | 61930016 | 61930335 | 61930016 | ID=Msa0613240-mRNA-1:exon:16986;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61925919 | 61926082 | 61925919 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61927259 | 61927389 | 61927259 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61927498 | 61927567 | 61927498 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61927673 | 61927738 | 61927673 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61929016 | 61929170 | 61929016 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61929271 | 61929366 | 61929271 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61929606 | 61929757 | 61929606 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61929842 | 61929925 | 61929842 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | CDS | 61930016 | 61930141 | 61930016 | ID=Msa0613240-mRNA-1:cds;Parent=Msa0613240-mRNA-1 |
| chr4_2 | three_prime_UTR | 61930142 | 61930335 | 61930142 | ID=Msa0613240-mRNA-1:three_prime_utr;Parent=Msa0613240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
