Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696190 | XP_003608231.1 | 91.247 | 377 | 2 | 1 | 2 | 347 | 1 | 377 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696190 | sp|Q84MD8|FHYRK_ARATH | 69.730 | 370 | 81 | 2 | 6 | 344 | 8 | 377 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696190 | B7FII7 | 91.247 | 377 | 2 | 1 | 2 | 347 | 1 | 377 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0696190 | 0.825128 | 5.549101e-54 | -8.615850e-47 |
| Msa0030000 | Msa0696190 | 0.800812 | 1.209027e-48 | -8.615850e-47 |
| Msa0055590 | Msa0696190 | 0.829672 | 4.514776e-55 | -8.615850e-47 |
| Msa0613240 | Msa0696190 | 0.955675 | 1.755532e-113 | -8.615850e-47 |
| Msa0624730 | Msa0696190 | 0.802256 | 6.114495e-49 | -8.615850e-47 |
| Msa0674220 | Msa0696190 | 0.809720 | 1.645841e-50 | -8.615850e-47 |
| Msa0696190 | Msa0969570 | 0.807369 | 5.228885e-50 | -8.615850e-47 |
| Msa0696190 | Msa0980440 | 0.811145 | 8.105166e-51 | -8.615850e-47 |
| Msa0696190 | Msa1008490 | 0.826399 | 2.771480e-54 | -8.615850e-47 |
| Msa0696190 | Msa1020710 | 0.827103 | 1.882349e-54 | -8.615850e-47 |
| Msa0696190 | Msa1040120 | 0.804750 | 1.859343e-49 | -8.615850e-47 |
| Msa0696190 | Msa1099030 | 0.830069 | 3.613932e-55 | -8.615850e-47 |
| Msa0696190 | Msa1201990 | 0.806192 | 9.267609e-50 | -8.615850e-47 |
| Msa0696190 | Msa1221260 | 0.810957 | 8.901121e-51 | -8.615850e-47 |
| Msa0696190 | Msa1229690 | 0.801288 | 9.664237e-49 | -8.615850e-47 |
| Msa0696190 | Msa1265070 | 0.825980 | 3.487306e-54 | -8.615850e-47 |
| Msa0696190 | Msa1310110 | 0.811288 | 7.545037e-51 | -8.615850e-47 |
| Msa0696190 | Msa1337340 | 0.811234 | 7.751085e-51 | -8.615850e-47 |
| Msa0696190 | Msa1373950 | 0.804144 | 2.487086e-49 | -8.615850e-47 |
| Msa0696190 | Msa1456810 | 0.803833 | 2.886112e-49 | -8.615850e-47 |
| Msa0696190 | Msa1465900 | 0.808298 | 3.317394e-50 | -8.615850e-47 |
| Msa0190830 | Msa0696190 | 0.807695 | 4.458412e-50 | -8.615850e-47 |
| Msa0233190 | Msa0696190 | 0.806694 | 7.265388e-50 | -8.615850e-47 |
| Msa0437710 | Msa0696190 | 0.803706 | 3.066717e-49 | -8.615850e-47 |
| Msa0269360 | Msa0696190 | 0.802923 | 4.455598e-49 | -8.615850e-47 |
| Msa0311580 | Msa0696190 | 0.812882 | 3.388995e-51 | -8.615850e-47 |
| Msa0509970 | Msa0696190 | 0.811564 | 6.574099e-51 | -8.615850e-47 |
| Msa0564350 | Msa0696190 | 0.863816 | 1.899765e-64 | -8.615850e-47 |
| Msa0581340 | Msa0696190 | 0.810197 | 1.299171e-50 | -8.615850e-47 |
| Msa0596100 | Msa0696190 | 0.806631 | 7.491273e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696190 | MtrunA17_Chr4g0048231 | 91.247 | 377 | 2 | 1 | 2 | 347 | 1 | 377 | 0.0 | 688 |
| Msa0696190 | MtrunA17_Chr2g0325581 | 40.720 | 361 | 165 | 6 | 9 | 335 | 11 | 356 | 9.41e-75 | 235 |
| Msa0696190 | MtrunA17_Chr4g0072381 | 33.772 | 228 | 113 | 4 | 6 | 195 | 71 | 298 | 1.67e-32 | 123 |
| Msa0696190 | MtrunA17_Chr7g0271811 | 42.424 | 99 | 57 | 0 | 62 | 160 | 161 | 259 | 2.26e-16 | 80.5 |
| Msa0696190 | MtrunA17_Chr8g0386821 | 34.677 | 124 | 79 | 2 | 62 | 185 | 217 | 338 | 2.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0696190 | AT4G21470.1 | 69.730 | 370 | 81 | 2 | 6 | 344 | 8 | 377 | 0.0 | 536 |
| Msa0696190 | AT5G57440.1 | 31.034 | 232 | 122 | 3 | 2 | 195 | 7 | 238 | 3.00e-28 | 110 |
| Msa0696190 | AT4G25840.1 | 31.304 | 230 | 116 | 4 | 6 | 195 | 68 | 295 | 4.47e-27 | 108 |
| Msa0696190 | AT1G56500.2 | 36.207 | 116 | 74 | 0 | 62 | 177 | 162 | 277 | 1.07e-14 | 75.9 |
| Msa0696190 | AT1G56500.1 | 36.207 | 116 | 74 | 0 | 62 | 177 | 162 | 277 | 1.33e-14 | 75.5 |
| Msa0696190 | AT4G11570.1 | 35.354 | 99 | 63 | 1 | 64 | 162 | 216 | 313 | 1.37e-11 | 65.5 |
| Msa0696190 | AT4G11570.2 | 35.354 | 99 | 63 | 1 | 64 | 162 | 216 | 313 | 1.37e-11 | 65.5 |
Find 99 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTTTCTCTGTCATAAT+TGG | 0.152007 | 4_4:+66060725 | Msa0696190:CDS |
| ACCATCATGAAAGGATATTT+TGG | 0.192325 | 4_4:-66060588 | None:intergenic |
| CATCCTGCAGGAGTTTATTT+TGG | 0.229456 | 4_4:+66062866 | Msa0696190:CDS |
| GAATTCACTGAGGATTTCTA+TGG | 0.263692 | 4_4:+66063079 | Msa0696190:CDS |
| TTTGGTTGGGCTGGATTATC+AGG | 0.274210 | 4_4:+66062884 | Msa0696190:CDS |
| CCTGTAGATCCTTGGTATAT+TGG | 0.295784 | 4_4:+66062507 | Msa0696190:CDS |
| ATTCTTTCTCTGTCATAATT+GGG | 0.321681 | 4_4:+66060726 | Msa0696190:CDS |
| TAAAGAGATGAGACTGTTTC+GGG | 0.326397 | 4_4:-66062292 | None:intergenic |
| TAAATGTGTTATCCTTGATT+TGG | 0.327756 | 4_4:+66059164 | Msa0696190:CDS |
| AAGGTTTCGTTAGGAAAGTA+TGG | 0.352809 | 4_4:+66059231 | Msa0696190:CDS |
| TTGAAGCTGCTAGGAGGTTA+AGG | 0.356565 | 4_4:+66060897 | Msa0696190:CDS |
| TGCATAGATAGTAATGAAAA+AGG | 0.370331 | 4_4:+66063486 | Msa0696190:three_prime_UTR |
| AGAGAAACCCTTAAAATTGT+TGG | 0.374738 | 4_4:+66059270 | Msa0696190:CDS |
| GTAAAGAGATGAGACTGTTT+CGG | 0.383126 | 4_4:-66062293 | None:intergenic |
| TCTTAGCAATCAAGCTTTCA+AGG | 0.400030 | 4_4:-66063249 | None:intergenic |
| GCAATCAAGCTTTCAAGGGT+TGG | 0.401958 | 4_4:-66063244 | None:intergenic |
| TGCAATATTAAAGCACTTCC+TGG | 0.406753 | 4_4:+66060482 | Msa0696190:CDS |
| TTGACTGCCTGCTGGCAATT+CGG | 0.407115 | 4_4:+66063530 | Msa0696190:three_prime_UTR |
| GGTCGTGGCTCGAAAGTTCT+CGG | 0.407645 | 4_4:+66062552 | Msa0696190:CDS |
| GAGAAACCCTTAAAATTGTT+GGG | 0.412718 | 4_4:+66059271 | Msa0696190:CDS |
| GGTCCTGTCATCAAGGGATT+TGG | 0.431696 | 4_4:+66062531 | Msa0696190:CDS |
| TTTCAAGTTGCAAATCAAGT+AGG | 0.447646 | 4_4:-66062340 | None:intergenic |
| TTACACATCAAATTGTGTTA+TGG | 0.455258 | 4_4:-66063461 | None:intergenic |
| CAATGGAGTTCCAATGGCCT+TGG | 0.458958 | 4_4:+66060535 | Msa0696190:CDS |
| TAGGAAAGTATGGAAAAGAA+TGG | 0.466192 | 4_4:+66059241 | Msa0696190:CDS |
| TTTAATATTTGACTGCCTGC+TGG | 0.467539 | 4_4:+66063522 | Msa0696190:three_prime_UTR |
| TCCTATGTATTCAAGTCATA+AGG | 0.468954 | 4_4:+66063312 | Msa0696190:CDS |
| AAAGTTCTCGGGATTCCTAC+AGG | 0.476631 | 4_4:+66062564 | Msa0696190:CDS |
| TTGATTTGCAACTTGAAAAG+TGG | 0.477544 | 4_4:+66062345 | Msa0696190:CDS |
| ATTAAACATTTGAAGAGCAA+TGG | 0.478640 | 4_4:+66060518 | Msa0696190:CDS |
| GTCGTGGCTCGAAAGTTCTC+GGG | 0.478902 | 4_4:+66062553 | Msa0696190:CDS |
| GAGTTTGATGCCAAGGCCAT+TGG | 0.479604 | 4_4:-66060545 | None:intergenic |
| CAGGATTTACAATCTGCAAA+TGG | 0.482532 | 4_4:-66062377 | None:intergenic |
| TGCAGGTAAGGCTGCTGAGA+TGG | 0.483409 | 4_4:+66062247 | Msa0696190:CDS |
| CCTTGGAGAGTTTGATGCCA+AGG | 0.484287 | 4_4:-66060552 | None:intergenic |
| TTCAAGTTGCAAATCAAGTA+GGG | 0.485434 | 4_4:-66062339 | None:intergenic |
| GAACTTTGCCTGTAGATCCT+TGG | 0.486092 | 4_4:+66062499 | Msa0696190:CDS |
| CCAATATACCAAGGATCTAC+AGG | 0.494991 | 4_4:-66062507 | None:intergenic |
| GAACTGAAGCTGGTTATAGT+TGG | 0.496876 | 4_4:+66063106 | Msa0696190:CDS |
| TTTAAAATGGTGATGAGCAT+TGG | 0.500703 | 4_4:+66062917 | Msa0696190:CDS |
| GTAGATCCTTGGTATATTGG+TGG | 0.501602 | 4_4:+66062510 | Msa0696190:CDS |
| ACCCGGTGTTACTGCAGGTA+AGG | 0.503151 | 4_4:+66062235 | Msa0696190:CDS |
| GTCTTCGATGACAAGACAGC+TGG | 0.504789 | 4_4:-66060930 | None:intergenic |
| CTATGGGGAAGAACTGAAGC+TGG | 0.505509 | 4_4:+66063096 | Msa0696190:CDS |
| TATTGGTGGTCCTGTCATCA+AGG | 0.507795 | 4_4:+66062524 | Msa0696190:CDS |
| AAATGGTGATGAGCATTGGT+TGG | 0.508754 | 4_4:+66062921 | Msa0696190:CDS |
| CTCCTTGCAGAGCATCCTGC+AGG | 0.509182 | 4_4:+66062854 | Msa0696190:CDS |
| CAAATGTTTAATCAACCGAT+TGG | 0.511593 | 4_4:-66060507 | None:intergenic |
| AAGCACTTCCTGGTGCCAAT+CGG | 0.516099 | 4_4:+66060492 | Msa0696190:CDS |
| TTCAGCTAATTTGTCAACAA+AGG | 0.517774 | 4_4:+66062820 | Msa0696190:intron |
| TTGGCATCGATGCTTTCCCT+TGG | 0.517938 | 4_4:-66060569 | None:intergenic |
| TGATTTGCAACTTGAAAAGT+GGG | 0.520051 | 4_4:+66062346 | Msa0696190:CDS |
| TTCTTTCTCTGTCATAATTG+GGG | 0.524522 | 4_4:+66060727 | Msa0696190:CDS |
| CAACCAAAATAAACTCCTGC+AGG | 0.530476 | 4_4:-66062869 | None:intergenic |
| AGGAAAGTATGGAAAAGAAT+GGG | 0.534914 | 4_4:+66059242 | Msa0696190:CDS |
| GAGCGCTCTCCGCAACTCTA+CGG | 0.536066 | 4_4:-66063282 | None:intergenic |
| GTCATCAAGGGATTTGGTCG+TGG | 0.537773 | 4_4:+66062537 | Msa0696190:CDS |
| AATTCACTGAGGATTTCTAT+GGG | 0.538308 | 4_4:+66063080 | Msa0696190:CDS |
| GCGTGGTGATTAAGAACCAC+AGG | 0.539138 | 4_4:-66063437 | None:intergenic |
| CCTTGGCATCAAACTCTCCA+AGG | 0.545690 | 4_4:+66060552 | Msa0696190:CDS |
| CTTAGCAATCAAGCTTTCAA+GGG | 0.548535 | 4_4:-66063248 | None:intergenic |
| GTATCTCACATGTCAGGGGA+AGG | 0.549904 | 4_4:-66060773 | None:intergenic |
| AGCCTTACCTGCAGTAACAC+CGG | 0.551513 | 4_4:-66062237 | None:intergenic |
| TAAATCAATACCATCATGAA+AGG | 0.556031 | 4_4:-66060597 | None:intergenic |
| GCAACGTGCCATCCAAATCA+AGG | 0.556859 | 4_4:-66059176 | None:intergenic |
| TTCAGACCCGGTGTTACTGC+AGG | 0.558872 | 4_4:+66062230 | Msa0696190:intron |
| CGACCAAATCCCTTGATGAC+AGG | 0.562166 | 4_4:-66062534 | None:intergenic |
| TTAATCAACCGATTGGCACC+AGG | 0.562930 | 4_4:-66060500 | None:intergenic |
| CTTTGTTGTATTATTCCCTG+TGG | 0.565934 | 4_4:+66063421 | Msa0696190:three_prime_UTR |
| TGTGTTATCCTTGATTTGGA+TGG | 0.565979 | 4_4:+66059168 | Msa0696190:CDS |
| GAAGAGCAATGGAGTTCCAA+TGG | 0.568733 | 4_4:+66060529 | Msa0696190:CDS |
| TCTCTTTACTGCAGCAGATG+AGG | 0.569566 | 4_4:+66062307 | Msa0696190:CDS |
| TGAGACTGTTTCGGGAGTGA+TGG | 0.574590 | 4_4:-66062284 | None:intergenic |
| TGGGCTGGATTATCAGGAAG+AGG | 0.577968 | 4_4:+66062890 | Msa0696190:CDS |
| AAAGGGTCCGAATTGCCAGC+AGG | 0.578719 | 4_4:-66063537 | None:intergenic |
| GCCAAAATATCCTTTCATGA+TGG | 0.584619 | 4_4:+66060587 | Msa0696190:CDS |
| TCAGATTCTTTGAAGCTGCT+AGG | 0.587275 | 4_4:+66060888 | Msa0696190:intron |
| GCCTTACCTGCAGTAACACC+GGG | 0.589155 | 4_4:-66062236 | None:intergenic |
| GGCACGTTGCTCAACACAGA+TGG | 0.591025 | 4_4:+66059189 | Msa0696190:CDS |
| CTCCTGCAGGATGCTCTGCA+AGG | 0.598721 | 4_4:-66062856 | None:intergenic |
| TCATGAAGACCGTAGAGTTG+CGG | 0.599063 | 4_4:+66063273 | Msa0696190:CDS |
| TGGCACTAGTACAAATGCTG+AGG | 0.602305 | 4_4:-66063391 | None:intergenic |
| AAGTATGGAAAAGAATGGGA+TGG | 0.605962 | 4_4:+66059246 | Msa0696190:CDS |
| ATTGGTGGTCCTGTCATCAA+GGG | 0.609764 | 4_4:+66062525 | Msa0696190:CDS |
| CTTGGCATCAAACTCTCCAA+GGG | 0.613970 | 4_4:+66060553 | Msa0696190:CDS |
| TCTTTCTCTGTCATAATTGG+GGG | 0.619478 | 4_4:+66060728 | Msa0696190:CDS |
| TCCTTATGACTTGAATACAT+AGG | 0.622413 | 4_4:-66063313 | None:intergenic |
| GTGAATTCATGAAGCAACCA+TGG | 0.626836 | 4_4:-66063064 | None:intergenic |
| TAAGGCTGCTGAGATGGAAG+TGG | 0.643789 | 4_4:+66062253 | Msa0696190:CDS |
| GATTCTTTGAAGCTGCTAGG+AGG | 0.656943 | 4_4:+66060891 | Msa0696190:intron |
| TCGATGACAAGACAGCTGGA+AGG | 0.657356 | 4_4:-66060926 | None:intergenic |
| AGTTGGTTACATACGTCCTG+AGG | 0.662929 | 4_4:+66063123 | Msa0696190:CDS |
| GATTTACAATCTGCAAATGG+TGG | 0.664343 | 4_4:-66062374 | None:intergenic |
| TCAAATTGTGTTATGGTGCG+TGG | 0.670645 | 4_4:-66063454 | None:intergenic |
| CGTGGTGATTAAGAACCACA+GGG | 0.689826 | 4_4:-66063436 | None:intergenic |
| ACAGGACCACCAATATACCA+AGG | 0.706611 | 4_4:-66062516 | None:intergenic |
| ATTCACTGAGGATTTCTATG+GGG | 0.723967 | 4_4:+66063081 | Msa0696190:CDS |
| GATTTGCAACTTGAAAAGTG+GGG | 0.725632 | 4_4:+66062347 | Msa0696190:CDS |
| GTTGCTTCATGAATTCACTG+AGG | 0.733231 | 4_4:+66063069 | Msa0696190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTACAAATATAATTAA+GGG | - | chr4_4:66061093-66061112 | None:intergenic | 10.0% |
| !! | CTTAATTATATTTGTAATAT+GGG | + | chr4_4:66061092-66061111 | Msa0696190:intron | 10.0% |
| !! | GAAAATATTCTAAATATTAT+TGG | + | chr4_4:66061440-66061459 | Msa0696190:intron | 10.0% |
| !! | ATCAAATTATAAACTTAAAT+GGG | - | chr4_4:66061524-66061543 | None:intergenic | 10.0% |
| !! | TTCATTAAAAAACTATTATA+TGG | - | chr4_4:66061788-66061807 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAGAAAAAAATG+TGG | - | chr4_4:66062198-66062217 | None:intergenic | 10.0% |
| !!! | ACAAATCAACATTTAAAATA+AGG | - | chr4_4:66059437-66059456 | None:intergenic | 15.0% |
| !! | TTCAATGTAATTATATGTTT+CGG | + | chr4_4:66059510-66059529 | Msa0696190:intron | 15.0% |
| !!! | TTTATGTTTTATTTGATTAG+AGG | + | chr4_4:66059910-66059929 | Msa0696190:intron | 15.0% |
| !! | AAATAACAATTTATTGCAAT+CGG | - | chr4_4:66060037-66060056 | None:intergenic | 15.0% |
| !! | CCATATTACAAATATAATTA+AGG | - | chr4_4:66061094-66061113 | None:intergenic | 15.0% |
| !! | CCTTAATTATATTTGTAATA+TGG | + | chr4_4:66061091-66061110 | Msa0696190:intron | 15.0% |
| !!! | ATTTTCTTTTTTATATGAAG+AGG | - | chr4_4:66061426-66061445 | None:intergenic | 15.0% |
| !! | CATCAAATTATAAACTTAAA+TGG | - | chr4_4:66061525-66061544 | None:intergenic | 15.0% |
| !!! | TTTTCTAAAAAATATCTACT+TGG | + | chr4_4:66062203-66062222 | Msa0696190:intron | 15.0% |
| !!! | ATCTATATTTATTTTTCTCT+CGG | + | chr4_4:66063035-66063054 | Msa0696190:intron | 15.0% |
| !! | AAGAAATAGTAATTACTGAT+CGG | - | chr4_4:66059391-66059410 | None:intergenic | 20.0% |
| !! | AAAATTAGAAAACAAGGTAA+TGG | - | chr4_4:66059806-66059825 | None:intergenic | 20.0% |
| !! | AACTCAAAAATTAGAAAACA+AGG | - | chr4_4:66059812-66059831 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAATTTTTGAGT+TGG | + | chr4_4:66059811-66059830 | Msa0696190:intron | 20.0% |
| !!! | TTGTTGATTTTTTTAAGTAC+TGG | + | chr4_4:66060136-66060155 | Msa0696190:intron | 20.0% |
| !!! | TTTATATTCTTTTTCTATGC+AGG | + | chr4_4:66060695-66060714 | Msa0696190:intron | 20.0% |
| !!! | TTCTGAAAAATTGTGATTTA+TGG | + | chr4_4:66060863-66060882 | Msa0696190:intron | 20.0% |
| !! | TTATATTTGTAATATGGGAT+AGG | + | chr4_4:66061097-66061116 | Msa0696190:intron | 20.0% |
| !! | TATATTTGTAATATGGGATA+GGG | + | chr4_4:66061098-66061117 | Msa0696190:intron | 20.0% |
| !! | TTTAGATTAAAGAAAATGGA+GGG | + | chr4_4:66061313-66061332 | Msa0696190:intron | 20.0% |
| !!! | TTACTCATTTTTAACTTGTA+AGG | + | chr4_4:66061611-66061630 | Msa0696190:intron | 20.0% |
| !! | TGCATAATTCTCATATATTT+GGG | - | chr4_4:66062748-66062767 | None:intergenic | 20.0% |
| !! | TTGCATAATTCTCATATATT+TGG | - | chr4_4:66062749-66062768 | None:intergenic | 20.0% |
| !! | TTAGGTCTATTTATATACTA+AGG | + | chr4_4:66062781-66062800 | Msa0696190:intron | 20.0% |
| !!! | TTTTCTTTGTTGTTGAAATA+TGG | - | chr4_4:66062950-66062969 | None:intergenic | 20.0% |
| !! | TAGATTATATGAAAATTCTG+AGG | - | chr4_4:66063020-66063039 | None:intergenic | 20.0% |
| !!! | TTTTGAGTTTCTCTAAAATT+GGG | + | chr4_4:66063197-66063216 | Msa0696190:intron | 20.0% |
| ! | TAAATGTGTTATCCTTGATT+TGG | + | chr4_4:66059164-66059183 | Msa0696190:CDS | 25.0% |
| !! | TGTTTTCCCAACAATTTTAA+GGG | - | chr4_4:66059280-66059299 | None:intergenic | 25.0% |
| ! | TCTTGTAAAACAAAAACTAG+TGG | + | chr4_4:66059577-66059596 | Msa0696190:intron | 25.0% |
| ! | TATTATGCTGCTAATATCTT+AGG | + | chr4_4:66059634-66059653 | Msa0696190:intron | 25.0% |
| ! | ATTATGCTGCTAATATCTTA+GGG | + | chr4_4:66059635-66059654 | Msa0696190:intron | 25.0% |
| ! | TACTTAAGAGAAAAAATGTG+AGG | + | chr4_4:66059693-66059712 | Msa0696190:intron | 25.0% |
| !! | TTTTGTGATCTTAGTTGAAT+AGG | + | chr4_4:66059839-66059858 | Msa0696190:intron | 25.0% |
| ! | TACGTTGTTTACAACAATAT+TGG | - | chr4_4:66059993-66060012 | None:intergenic | 25.0% |
| !! | AAGTGAATCCATCATTTTAT+AGG | + | chr4_4:66060184-66060203 | Msa0696190:intron | 25.0% |
| ! | ATATGGTTCCTATAAAATGA+TGG | - | chr4_4:66060195-66060214 | None:intergenic | 25.0% |
| ! | CAATTGAACAAAGATCATAT+CGG | - | chr4_4:66060302-66060321 | None:intergenic | 25.0% |
| ! | ATTAAACATTTGAAGAGCAA+TGG | + | chr4_4:66060518-66060537 | Msa0696190:CDS | 25.0% |
| ! | TAAATCAATACCATCATGAA+AGG | - | chr4_4:66060600-66060619 | None:intergenic | 25.0% |
| ! | TATCACAAACAATGCAAAAA+AGG | - | chr4_4:66060650-66060669 | None:intergenic | 25.0% |
| ! | ATTCTTTCTCTGTCATAATT+GGG | + | chr4_4:66060726-66060745 | Msa0696190:CDS | 25.0% |
| ! | TTGTTTATCCTTGATTATTG+AGG | + | chr4_4:66060806-66060825 | Msa0696190:intron | 25.0% |
| ! | TGTTTATCCTTGATTATTGA+GGG | + | chr4_4:66060807-66060826 | Msa0696190:intron | 25.0% |
| ! | TAAATCAGAGTTAGAATAGA+AGG | - | chr4_4:66060969-66060988 | None:intergenic | 25.0% |
| !!! | AGGATTAAATTTTCAAGAGA+AGG | - | chr4_4:66061025-66061044 | None:intergenic | 25.0% |
| !!! | GTAGCTTATTTTTGTTGAAT+TGG | + | chr4_4:66061203-66061222 | Msa0696190:intron | 25.0% |
| !!! | TATTTTTGTTGAATTGGCAT+AGG | + | chr4_4:66061209-66061228 | Msa0696190:intron | 25.0% |
| !! | ATTTTTGTTGAATTGGCATA+GGG | + | chr4_4:66061210-66061229 | Msa0696190:intron | 25.0% |
| !! | CACATGCTATTTGATTAAAT+TGG | + | chr4_4:66061282-66061301 | Msa0696190:intron | 25.0% |
| ! | AGCCTTTAGATTAAAGAAAA+TGG | + | chr4_4:66061309-66061328 | Msa0696190:intron | 25.0% |
| !! | CTCCATTTTCTTTAATCTAA+AGG | - | chr4_4:66061314-66061333 | None:intergenic | 25.0% |
| ! | CTTTAGATTAAAGAAAATGG+AGG | + | chr4_4:66061312-66061331 | Msa0696190:intron | 25.0% |
| ! | CAGCTATGAAATAAATCTAA+TGG | + | chr4_4:66061547-66061566 | Msa0696190:intron | 25.0% |
| !!! | TTTTTAACTTGTAAGGATGA+TGG | + | chr4_4:66061618-66061637 | Msa0696190:intron | 25.0% |
| ! | TCATGGTTTCCAATTAATTT+AGG | + | chr4_4:66061892-66061911 | Msa0696190:intron | 25.0% |
| ! | TGTGCATATCTTCTTATAAT+TGG | + | chr4_4:66062055-66062074 | Msa0696190:intron | 25.0% |
| ! | ATTTCCTTTATTGGTATGTA+CGG | + | chr4_4:66062431-66062450 | Msa0696190:intron | 25.0% |
| ! | TAGCATTATGATTTATTGCA+GGG | + | chr4_4:66062469-66062488 | Msa0696190:intron | 25.0% |
| ! | ATAATTCTCATATATTTGGG+GGG | - | chr4_4:66062745-66062764 | None:intergenic | 25.0% |
| ! | CATAATTCTCATATATTTGG+GGG | - | chr4_4:66062746-66062765 | None:intergenic | 25.0% |
| ! | GCATAATTCTCATATATTTG+GGG | - | chr4_4:66062747-66062766 | None:intergenic | 25.0% |
| !! | ATGCAATCTTAAACAGTTTT+AGG | + | chr4_4:66062763-66062782 | Msa0696190:intron | 25.0% |
| ! | TCTATTTATATACTAAGGCT+CGG | + | chr4_4:66062786-66062805 | Msa0696190:intron | 25.0% |
| !!! | AGGAAGAGGTATTTTTAAAA+TGG | + | chr4_4:66062904-66062923 | Msa0696190:CDS | 25.0% |
| !!! | AGTTGTTTATTTTAAACCTC+TGG | + | chr4_4:66062980-66062999 | Msa0696190:intron | 25.0% |
| !!! | ATATTTATTTTTCTCTCGGT+AGG | + | chr4_4:66063039-66063058 | Msa0696190:intron | 25.0% |
| ! | GCATGATTTAGAAATAATGT+AGG | - | chr4_4:66063160-66063179 | None:intergenic | 25.0% |
| !!! | CTTTTGAGTTTCTCTAAAAT+TGG | + | chr4_4:66063196-66063215 | Msa0696190:intron | 25.0% |
| !!! | CTCATAGTACTGATTTTATT+AGG | + | chr4_4:66063354-66063373 | Msa0696190:exon | 25.0% |
| !!! | TAATACAACAAAGCTGTTTT+TGG | - | chr4_4:66063414-66063433 | None:intergenic | 25.0% |
| ! | TTACACATCAAATTGTGTTA+TGG | - | chr4_4:66063464-66063483 | None:intergenic | 25.0% |
| ! | TGCATAGATAGTAATGAAAA+AGG | + | chr4_4:66063486-66063505 | Msa0696190:three_prime_UTR | 25.0% |
| ! | TAGGAAAGTATGGAAAAGAA+TGG | + | chr4_4:66059241-66059260 | Msa0696190:CDS | 30.0% |
| ! | AGGAAAGTATGGAAAAGAAT+GGG | + | chr4_4:66059242-66059261 | Msa0696190:CDS | 30.0% |
| AGAGAAACCCTTAAAATTGT+TGG | + | chr4_4:66059270-66059289 | Msa0696190:CDS | 30.0% | |
| GAGAAACCCTTAAAATTGTT+GGG | + | chr4_4:66059271-66059290 | Msa0696190:CDS | 30.0% | |
| ! | GTGTTTTCCCAACAATTTTA+AGG | - | chr4_4:66059281-66059300 | None:intergenic | 30.0% |
| ! | GTGGTATAAAAATGCACTTT+TGG | + | chr4_4:66059596-66059615 | Msa0696190:intron | 30.0% |
| TTATGCTGCTAATATCTTAG+GGG | + | chr4_4:66059636-66059655 | Msa0696190:intron | 30.0% | |
| CTCTTAAGTAAATCTTGCAA+TGG | - | chr4_4:66059683-66059702 | None:intergenic | 30.0% | |
| ! | CTTTTTAGACGTATAACTCT+GGG | + | chr4_4:66059940-66059959 | Msa0696190:intron | 30.0% |
| ! | TTTTTAGACGTATAACTCTG+GGG | + | chr4_4:66059941-66059960 | Msa0696190:intron | 30.0% |
| TGTTTACAACAATATTGGTC+TGG | - | chr4_4:66059988-66060007 | None:intergenic | 30.0% | |
| ATCTGTTAATGAATTTCCCA+AGG | - | chr4_4:66060231-66060250 | None:intergenic | 30.0% | |
| CGATATGATCTTTGTTCAAT+TGG | + | chr4_4:66060300-66060319 | Msa0696190:intron | 30.0% | |
| ACGAAACATATGATACACAA+AGG | - | chr4_4:66060329-66060348 | None:intergenic | 30.0% | |
| !! | CTTTGAAGTACAAGTTCAAT+TGG | - | chr4_4:66060411-66060430 | None:intergenic | 30.0% |
| CTTGTACTTCAAAGTTATGA+AGG | + | chr4_4:66060417-66060436 | Msa0696190:intron | 30.0% | |
| !! | TTTAGCTTGATTCTCATGTT+AGG | + | chr4_4:66060456-66060475 | Msa0696190:intron | 30.0% |
| CAAATGTTTAATCAACCGAT+TGG | - | chr4_4:66060510-66060529 | None:intergenic | 30.0% | |
| ! | ACCATCATGAAAGGATATTT+TGG | - | chr4_4:66060591-66060610 | None:intergenic | 30.0% |
| ! | TATTCTTTTTCTATGCAGGA+TGG | + | chr4_4:66060699-66060718 | Msa0696190:intron | 30.0% |
| GATTCTTTCTCTGTCATAAT+TGG | + | chr4_4:66060725-66060744 | Msa0696190:CDS | 30.0% | |
| TTCTTTCTCTGTCATAATTG+GGG | + | chr4_4:66060727-66060746 | Msa0696190:CDS | 30.0% | |
| ! | ATTTTGTATCTCACATGTCA+GGG | - | chr4_4:66060781-66060800 | None:intergenic | 30.0% |
| ! | TATTTTGTATCTCACATGTC+AGG | - | chr4_4:66060782-66060801 | None:intergenic | 30.0% |
| !!! | TCTTTTTGAAGTGTAACGAT+AGG | - | chr4_4:66061045-66061064 | None:intergenic | 30.0% |
| TTGCTTATTTGTGCTTAATC+TGG | + | chr4_4:66061169-66061188 | Msa0696190:intron | 30.0% | |
| ! | TTTTTGTTGAATTGGCATAG+GGG | + | chr4_4:66061211-66061230 | Msa0696190:intron | 30.0% |
| ATTAAAGAAAATGGAGGGAT+AGG | + | chr4_4:66061318-66061337 | Msa0696190:intron | 30.0% | |
| TGTGTAGTAATTACAAGGAT+GGG | - | chr4_4:66061383-66061402 | None:intergenic | 30.0% | |
| ATGTCTGTGTAGTAATTACA+AGG | - | chr4_4:66061388-66061407 | None:intergenic | 30.0% | |
| TGAAATAAATCTAATGGCTG+AGG | + | chr4_4:66061553-66061572 | Msa0696190:intron | 30.0% | |
| !! | TGTTGTTATGTTGATAGCTT+GGG | + | chr4_4:66061578-66061597 | Msa0696190:intron | 30.0% |
| TATTTGATGAGTGCTTATTC+AGG | + | chr4_4:66061682-66061701 | Msa0696190:intron | 30.0% | |
| TGATTGATTAACAGAGAAAG+CGG | + | chr4_4:66061718-66061737 | Msa0696190:intron | 30.0% | |
| TGAGCACACATACAATAAAT+AGG | - | chr4_4:66061823-66061842 | None:intergenic | 30.0% | |
| TATTTATTGTATGTGTGCTC+AGG | + | chr4_4:66061822-66061841 | Msa0696190:intron | 30.0% | |
| TGGACAAGACCTAAATTAAT+TGG | - | chr4_4:66061904-66061923 | None:intergenic | 30.0% | |
| ! | ACCATGTTTGAAGTATCAAA+GGG | - | chr4_4:66061975-66061994 | None:intergenic | 30.0% |
| ! | AACCATGTTTGAAGTATCAA+AGG | - | chr4_4:66061976-66061995 | None:intergenic | 30.0% |
| GATACTTCAAACATGGTTTA+TGG | + | chr4_4:66061978-66061997 | Msa0696190:intron | 30.0% | |
| !! | GTTCAATCCGTATTACTTTT+TGG | + | chr4_4:66062096-66062115 | Msa0696190:intron | 30.0% |
| GATTCAGCCAAAAAGTAATA+CGG | - | chr4_4:66062106-66062125 | None:intergenic | 30.0% | |
| !! | TTCAAGTTGCAAATCAAGTA+GGG | - | chr4_4:66062342-66062361 | None:intergenic | 30.0% |
| !! | TTTCAAGTTGCAAATCAAGT+AGG | - | chr4_4:66062343-66062362 | None:intergenic | 30.0% |
| !! | TTGATTTGCAACTTGAAAAG+TGG | + | chr4_4:66062345-66062364 | Msa0696190:CDS | 30.0% |
| ! | TGATTTGCAACTTGAAAAGT+GGG | + | chr4_4:66062346-66062365 | Msa0696190:CDS | 30.0% |
| AATACCGTACATACCAATAA+AGG | - | chr4_4:66062438-66062457 | None:intergenic | 30.0% | |
| CTAGCATTATGATTTATTGC+AGG | + | chr4_4:66062468-66062487 | Msa0696190:intron | 30.0% | |
| AGCATTATGATTTATTGCAG+GGG | + | chr4_4:66062470-66062489 | Msa0696190:intron | 30.0% | |
| AAAACTGAAAACAAACCTGT+AGG | - | chr4_4:66062582-66062601 | None:intergenic | 30.0% | |
| !! | TTTTCACTTATTTCTTGTGC+TGG | + | chr4_4:66062598-66062617 | Msa0696190:intron | 30.0% |
| GTTATCCCAATTCTATTTAG+TGG | + | chr4_4:66062679-66062698 | Msa0696190:intron | 30.0% | |
| AGCAACCACTAAATAGAATT+GGG | - | chr4_4:66062687-66062706 | None:intergenic | 30.0% | |
| AAGCAACCACTAAATAGAAT+TGG | - | chr4_4:66062688-66062707 | None:intergenic | 30.0% | |
| ! | TTCAGCTAATTTGTCAACAA+AGG | + | chr4_4:66062820-66062839 | Msa0696190:intron | 30.0% |
| ! | TTTAAAATGGTGATGAGCAT+TGG | + | chr4_4:66062917-66062936 | Msa0696190:CDS | 30.0% |
| AATTCACTGAGGATTTCTAT+GGG | + | chr4_4:66063080-66063099 | Msa0696190:CDS | 30.0% | |
| TCCTATGTATTCAAGTCATA+AGG | + | chr4_4:66063312-66063331 | Msa0696190:CDS | 30.0% | |
| TCCTTATGACTTGAATACAT+AGG | - | chr4_4:66063316-66063335 | None:intergenic | 30.0% | |
| !! | TGTGTTATCCTTGATTTGGA+TGG | + | chr4_4:66059168-66059187 | Msa0696190:CDS | 35.0% |
| !! | CATAGTTTGCAACGTTTTGA+AGG | + | chr4_4:66059212-66059231 | Msa0696190:CDS | 35.0% |
| !!! | AACGTTTTGAAGGTTTCGTT+AGG | + | chr4_4:66059222-66059241 | Msa0696190:CDS | 35.0% |
| AAGGTTTCGTTAGGAAAGTA+TGG | + | chr4_4:66059231-66059250 | Msa0696190:CDS | 35.0% | |
| AAGTATGGAAAAGAATGGGA+TGG | + | chr4_4:66059246-66059265 | Msa0696190:CDS | 35.0% | |
| TCTGCTGTTGTTGAAGATTA+TGG | + | chr4_4:66059315-66059334 | Msa0696190:intron | 35.0% | |
| CTCGGAAACAAATTCAATTG+GGG | - | chr4_4:66059352-66059371 | None:intergenic | 35.0% | |
| GCTCGGAAACAAATTCAATT+GGG | - | chr4_4:66059353-66059372 | None:intergenic | 35.0% | |
| AGCTCGGAAACAAATTCAAT+TGG | - | chr4_4:66059354-66059373 | None:intergenic | 35.0% | |
| AATTACTGATCGGAGAATTG+CGG | - | chr4_4:66059381-66059400 | None:intergenic | 35.0% | |
| ! | TAGTCTGTCATTGTTTTCGT+AGG | + | chr4_4:66059772-66059791 | Msa0696190:intron | 35.0% |
| TAGTTGAATAGGCTATTCGT+TGG | + | chr4_4:66059850-66059869 | Msa0696190:intron | 35.0% | |
| AGTTGAATAGGCTATTCGTT+GGG | + | chr4_4:66059851-66059870 | Msa0696190:intron | 35.0% | |
| CCAGAGTTATACGTCTAAAA+AGG | - | chr4_4:66059942-66059961 | None:intergenic | 35.0% | |
| ! | CCTTTTTAGACGTATAACTC+TGG | + | chr4_4:66059939-66059958 | Msa0696190:intron | 35.0% |
| ! | TTTTAGACGTATAACTCTGG+GGG | + | chr4_4:66059942-66059961 | Msa0696190:intron | 35.0% |
| AAGGAAAAGAGGATTGGATA+TGG | - | chr4_4:66060212-66060231 | None:intergenic | 35.0% | |
| ! | ATATCCAATCCTCTTTTCCT+TGG | + | chr4_4:66060211-66060230 | Msa0696190:intron | 35.0% |
| ! | TATCCAATCCTCTTTTCCTT+GGG | + | chr4_4:66060212-66060231 | Msa0696190:intron | 35.0% |
| ATGAATTTCCCAAGGAAAAG+AGG | - | chr4_4:66060223-66060242 | None:intergenic | 35.0% | |
| ! | GGGACAAATTTTCTAGATGT+AGG | - | chr4_4:66060260-66060279 | None:intergenic | 35.0% |
| ! | GATCATGAACTAATTGACTC+GGG | - | chr4_4:66060280-66060299 | None:intergenic | 35.0% |
| GGATCATGAACTAATTGACT+CGG | - | chr4_4:66060281-66060300 | None:intergenic | 35.0% | |
| ! | TGCAATATTAAAGCACTTCC+TGG | + | chr4_4:66060482-66060501 | Msa0696190:CDS | 35.0% |
| GCCAAAATATCCTTTCATGA+TGG | + | chr4_4:66060587-66060606 | Msa0696190:CDS | 35.0% | |
| TCTTTCTCTGTCATAATTGG+GGG | + | chr4_4:66060728-66060747 | Msa0696190:CDS | 35.0% | |
| ! | TTTTGTATCTCACATGTCAG+GGG | - | chr4_4:66060780-66060799 | None:intergenic | 35.0% |
| CAAGTAACCCTCAATAATCA+AGG | - | chr4_4:66060817-66060836 | None:intergenic | 35.0% | |
| TCTAACTCTGATTTATGTGC+CGG | + | chr4_4:66060974-66060993 | Msa0696190:intron | 35.0% | |
| TAATATGGGATAGGGTCAAA+TGG | + | chr4_4:66061106-66061125 | Msa0696190:intron | 35.0% | |
| ACAAATAAGCAAGCGTGATT+TGG | - | chr4_4:66061161-66061180 | None:intergenic | 35.0% | |
| CTTATTTGTGCTTAATCTGG+TGG | + | chr4_4:66061172-66061191 | Msa0696190:intron | 35.0% | |
| CTGTGTAGTAATTACAAGGA+TGG | - | chr4_4:66061384-66061403 | None:intergenic | 35.0% | |
| !! | CTGTTGTTATGTTGATAGCT+TGG | + | chr4_4:66061577-66061596 | Msa0696190:intron | 35.0% |
| GATTGATTAACAGAGAAAGC+GGG | + | chr4_4:66061719-66061738 | Msa0696190:intron | 35.0% | |
| ! | TTCTTTTTGTGACGTCTTCA+TGG | + | chr4_4:66061875-66061894 | Msa0696190:intron | 35.0% |
| ! | CTTTTGCAGATAGTTGTAAC+TGG | - | chr4_4:66061924-66061943 | None:intergenic | 35.0% |
| ACCCTTTGATACTTCAAACA+TGG | + | chr4_4:66061971-66061990 | Msa0696190:intron | 35.0% | |
| TAAAGAGATGAGACTGTTTC+GGG | - | chr4_4:66062295-66062314 | None:intergenic | 35.0% | |
| GTAAAGAGATGAGACTGTTT+CGG | - | chr4_4:66062296-66062315 | None:intergenic | 35.0% | |
| GATTTGCAACTTGAAAAGTG+GGG | + | chr4_4:66062347-66062366 | Msa0696190:CDS | 35.0% | |
| GATTTACAATCTGCAAATGG+TGG | - | chr4_4:66062377-66062396 | None:intergenic | 35.0% | |
| CAGGATTTACAATCTGCAAA+TGG | - | chr4_4:66062380-66062399 | None:intergenic | 35.0% | |
| ! | AGTGTTATCTCAAGGTATTC+AGG | - | chr4_4:66062399-66062418 | None:intergenic | 35.0% |
| ! | AGACACAAAGTGTTATCTCA+AGG | - | chr4_4:66062407-66062426 | None:intergenic | 35.0% |
| TGTCTCTGCATTTCCTTTAT+TGG | + | chr4_4:66062422-66062441 | Msa0696190:intron | 35.0% | |
| ATTATGATTTATTGCAGGGG+TGG | + | chr4_4:66062473-66062492 | Msa0696190:intron | 35.0% | |
| ACGTAGAGAGAAGCAAAATA+TGG | + | chr4_4:66062633-66062652 | Msa0696190:intron | 35.0% | |
| CGTAGAGAGAAGCAAAATAT+GGG | + | chr4_4:66062634-66062653 | Msa0696190:intron | 35.0% | |
| TAATTCATAATGATGCCCTG+AGG | + | chr4_4:66062657-66062676 | Msa0696190:intron | 35.0% | |
| ATAGAATTGGGATAACCTCA+GGG | - | chr4_4:66062675-66062694 | None:intergenic | 35.0% | |
| AATAGAATTGGGATAACCTC+AGG | - | chr4_4:66062676-66062695 | None:intergenic | 35.0% | |
| ! | TAAGCTTGAGATCCTGATTT+TGG | + | chr4_4:66062714-66062733 | Msa0696190:intron | 35.0% |
| !!! | TGCAGGAGTTTATTTTGGTT+GGG | + | chr4_4:66062871-66062890 | Msa0696190:CDS | 35.0% |
| GGTAAAATAGTTATAGCCAG+AGG | - | chr4_4:66062999-66063018 | None:intergenic | 35.0% | |
| GAATTCACTGAGGATTTCTA+TGG | + | chr4_4:66063079-66063098 | Msa0696190:CDS | 35.0% | |
| ATTCACTGAGGATTTCTATG+GGG | + | chr4_4:66063081-66063100 | Msa0696190:CDS | 35.0% | |
| CAAAAGATGAAGAACATGAC+AGG | - | chr4_4:66063182-66063201 | None:intergenic | 35.0% | |
| CTTAGCAATCAAGCTTTCAA+GGG | - | chr4_4:66063251-66063270 | None:intergenic | 35.0% | |
| TCTTAGCAATCAAGCTTTCA+AGG | - | chr4_4:66063252-66063271 | None:intergenic | 35.0% | |
| ! | CTTTGTTGTATTATTCCCTG+TGG | + | chr4_4:66063421-66063440 | Msa0696190:three_prime_UTR | 35.0% |
| TTTAATATTTGACTGCCTGC+TGG | + | chr4_4:66063522-66063541 | Msa0696190:three_prime_UTR | 35.0% | |
| AATTGTTGGGAAAACACCGT+TGG | + | chr4_4:66059284-66059303 | Msa0696190:intron | 40.0% | |
| ACAAATTCAATTGGGGAGCA+AGG | - | chr4_4:66059345-66059364 | None:intergenic | 40.0% | |
| TCGGTATTCAATACACATCG+AGG | + | chr4_4:66059529-66059548 | Msa0696190:intron | 40.0% | |
| GTTGAATAGGCTATTCGTTG+GGG | + | chr4_4:66059852-66059871 | Msa0696190:intron | 40.0% | |
| TTTAGACGTATAACTCTGGG+GGG | + | chr4_4:66059943-66059962 | Msa0696190:intron | 40.0% | |
| TTTCCCAAGGAAAAGAGGAT+TGG | - | chr4_4:66060218-66060237 | None:intergenic | 40.0% | |
| AACCAAGTAACTGCGTTTAC+AGG | - | chr4_4:66060381-66060400 | None:intergenic | 40.0% | |
| TGTAAACGCAGTTACTTGGT+TGG | + | chr4_4:66060380-66060399 | Msa0696190:intron | 40.0% | |
| AGCTTGATTCTCATGTTAGG+TGG | + | chr4_4:66060459-66060478 | Msa0696190:intron | 40.0% | |
| TTCAGAAACCTTACGCTTCT+TGG | + | chr4_4:66060621-66060640 | Msa0696190:intron | 40.0% | |
| !! | TCAGATTCTTTGAAGCTGCT+AGG | + | chr4_4:66060888-66060907 | Msa0696190:intron | 40.0% |
| CATCAAAGAAGACTTGAAGC+CGG | - | chr4_4:66060996-66061015 | None:intergenic | 40.0% | |
| GTCTCTCACTATCTCTTTCT+TGG | - | chr4_4:66061239-66061258 | None:intergenic | 40.0% | |
| GAAAATGGAGGGATAGGATT+TGG | + | chr4_4:66061324-66061343 | Msa0696190:intron | 40.0% | |
| AAAAGTCCAGACAGAATCAC+TGG | - | chr4_4:66061493-66061512 | None:intergenic | 40.0% | |
| !!! | AGGATGATGGCTTGTTTTTG+AGG | + | chr4_4:66061631-66061650 | Msa0696190:intron | 40.0% |
| !!! | TGATGGCTTGTTTTTGAGGA+AGG | + | chr4_4:66061635-66061654 | Msa0696190:intron | 40.0% |
| GTATCAAAGGGTAGACTCAT+AGG | - | chr4_4:66061963-66061982 | None:intergenic | 40.0% | |
| ! | TGAATCCTCCCCTTTTGTTA+TGG | + | chr4_4:66062120-66062139 | Msa0696190:intron | 40.0% |
| AGTGCAGACCATAACAAAAG+GGG | - | chr4_4:66062131-66062150 | None:intergenic | 40.0% | |
| GAGTGCAGACCATAACAAAA+GGG | - | chr4_4:66062132-66062151 | None:intergenic | 40.0% | |
| TGAGTGCAGACCATAACAAA+AGG | - | chr4_4:66062133-66062152 | None:intergenic | 40.0% | |
| CCAATATACCAAGGATCTAC+AGG | - | chr4_4:66062510-66062529 | None:intergenic | 40.0% | |
| CCTGTAGATCCTTGGTATAT+TGG | + | chr4_4:66062507-66062526 | Msa0696190:CDS | 40.0% | |
| GTAGATCCTTGGTATATTGG+TGG | + | chr4_4:66062510-66062529 | Msa0696190:CDS | 40.0% | |
| ! | CATCCTGCAGGAGTTTATTT+TGG | + | chr4_4:66062866-66062885 | Msa0696190:CDS | 40.0% |
| CAACCAAAATAAACTCCTGC+AGG | - | chr4_4:66062872-66062891 | None:intergenic | 40.0% | |
| !!! | CTGCAGGAGTTTATTTTGGT+TGG | + | chr4_4:66062870-66062889 | Msa0696190:CDS | 40.0% |
| !! | AAATGGTGATGAGCATTGGT+TGG | + | chr4_4:66062921-66062940 | Msa0696190:CDS | 40.0% |
| GTGAATTCATGAAGCAACCA+TGG | - | chr4_4:66063067-66063086 | None:intergenic | 40.0% | |
| GTTGCTTCATGAATTCACTG+AGG | + | chr4_4:66063069-66063088 | Msa0696190:CDS | 40.0% | |
| GAACTGAAGCTGGTTATAGT+TGG | + | chr4_4:66063106-66063125 | Msa0696190:CDS | 40.0% | |
| TCAAATTGTGTTATGGTGCG+TGG | - | chr4_4:66063457-66063476 | None:intergenic | 40.0% | |
| TGCTAATATCTTAGGGGCCT+AGG | + | chr4_4:66059642-66059661 | Msa0696190:intron | 45.0% | |
| GCTAATATCTTAGGGGCCTA+GGG | + | chr4_4:66059643-66059662 | Msa0696190:intron | 45.0% | |
| CTAATATCTTAGGGGCCTAG+GGG | + | chr4_4:66059644-66059663 | Msa0696190:intron | 45.0% | |
| ! | CTATTCGTTGGGGCATTTCA+GGG | + | chr4_4:66059862-66059881 | Msa0696190:intron | 45.0% |
| CTCCTGTAAACGCAGTTACT+TGG | + | chr4_4:66060376-66060395 | Msa0696190:intron | 45.0% | |
| TTAATCAACCGATTGGCACC+AGG | - | chr4_4:66060503-66060522 | None:intergenic | 45.0% | |
| GAAGAGCAATGGAGTTCCAA+TGG | + | chr4_4:66060529-66060548 | Msa0696190:CDS | 45.0% | |
| CTTGGCATCAAACTCTCCAA+GGG | + | chr4_4:66060553-66060572 | Msa0696190:CDS | 45.0% | |
| ! | AAAGGAGTCCAAGAAGCGTA+AGG | - | chr4_4:66060632-66060651 | None:intergenic | 45.0% |
| !! | GATTCTTTGAAGCTGCTAGG+AGG | + | chr4_4:66060891-66060910 | Msa0696190:intron | 45.0% |
| TTGAAGCTGCTAGGAGGTTA+AGG | + | chr4_4:66060897-66060916 | Msa0696190:CDS | 45.0% | |
| CGGCTTCAAGTCTTCTTTGA+TGG | + | chr4_4:66060994-66061013 | Msa0696190:intron | 45.0% | |
| TGCTTAATCTGGTGGCTTAC+AGG | + | chr4_4:66061180-66061199 | Msa0696190:intron | 45.0% | |
| GCTTAATCTGGTGGCTTACA+GGG | + | chr4_4:66061181-66061200 | Msa0696190:intron | 45.0% | |
| GAGATAGTGAGAGACTCTGA+AGG | + | chr4_4:66061244-66061263 | Msa0696190:intron | 45.0% | |
| ! | CTCTGAAGGAGAGACATAGT+AGG | + | chr4_4:66061258-66061277 | Msa0696190:intron | 45.0% |
| GGATGGGATCAATTGACATC+AGG | - | chr4_4:66061367-66061386 | None:intergenic | 45.0% | |
| ! | AGGGGGTGTAGGATGTTTAA+CGG | - | chr4_4:66061470-66061489 | None:intergenic | 45.0% |
| ! | AACAGAGAAAGCGGGTGTTT+TGG | + | chr4_4:66061727-66061746 | Msa0696190:intron | 45.0% |
| ! | ACAGAGAAAGCGGGTGTTTT+GGG | + | chr4_4:66061728-66061747 | Msa0696190:intron | 45.0% |
| TCTCTTTACTGCAGCAGATG+AGG | + | chr4_4:66062307-66062326 | Msa0696190:CDS | 45.0% | |
| GAACTTTGCCTGTAGATCCT+TGG | + | chr4_4:66062499-66062518 | Msa0696190:CDS | 45.0% | |
| ACAGGACCACCAATATACCA+AGG | - | chr4_4:66062519-66062538 | None:intergenic | 45.0% | |
| ! | TATTGGTGGTCCTGTCATCA+AGG | + | chr4_4:66062524-66062543 | Msa0696190:CDS | 45.0% |
| ! | ATTGGTGGTCCTGTCATCAA+GGG | + | chr4_4:66062525-66062544 | Msa0696190:CDS | 45.0% |
| AAAGTTCTCGGGATTCCTAC+AGG | + | chr4_4:66062564-66062583 | Msa0696190:CDS | 45.0% | |
| TGGGGGGAAATTCCAAAATC+AGG | - | chr4_4:66062729-66062748 | None:intergenic | 45.0% | |
| !!! | GGAGTTTATTTTGGTTGGGC+TGG | + | chr4_4:66062875-66062894 | Msa0696190:CDS | 45.0% |
| ! | TTTGGTTGGGCTGGATTATC+AGG | + | chr4_4:66062884-66062903 | Msa0696190:CDS | 45.0% |
| ! | TTTTCTCTCGGTAGGAACCA+TGG | + | chr4_4:66063047-66063066 | Msa0696190:intron | 45.0% |
| AGTTGGTTACATACGTCCTG+AGG | + | chr4_4:66063123-66063142 | Msa0696190:CDS | 45.0% | |
| GTTACATACGTCCTGAGGTA+TGG | + | chr4_4:66063128-66063147 | Msa0696190:intron | 45.0% | |
| GCAATCAAGCTTTCAAGGGT+TGG | - | chr4_4:66063247-66063266 | None:intergenic | 45.0% | |
| TCATGAAGACCGTAGAGTTG+CGG | + | chr4_4:66063273-66063292 | Msa0696190:CDS | 45.0% | |
| TGGCACTAGTACAAATGCTG+AGG | - | chr4_4:66063394-66063413 | None:intergenic | 45.0% | |
| CGTGGTGATTAAGAACCACA+GGG | - | chr4_4:66063439-66063458 | None:intergenic | 45.0% | |
| !!! | AATTTTTTACTTAATTTAAA+AGG | + | chr4_4:66062011-66062030 | Msa0696190:intron | 5.0% |
| GCAACGTGCCATCCAAATCA+AGG | - | chr4_4:66059179-66059198 | None:intergenic | 50.0% | |
| ACAGCAGAAGCAGCTTCCAA+CGG | - | chr4_4:66059303-66059322 | None:intergenic | 50.0% | |
| GGAGAATTGCGGAGAAAGCT+CGG | - | chr4_4:66059370-66059389 | None:intergenic | 50.0% | |
| CGTGTCAGTCTGTGCTTCAT+AGG | - | chr4_4:66059462-66059481 | None:intergenic | 50.0% | |
| ! | GCTATTCGTTGGGGCATTTC+AGG | + | chr4_4:66059861-66059880 | Msa0696190:intron | 50.0% |
| !! | TCTGGGGGGTTGATGTTGTA+TGG | + | chr4_4:66059957-66059976 | Msa0696190:intron | 50.0% |
| !! | CTGGGGGGTTGATGTTGTAT+GGG | + | chr4_4:66059958-66059977 | Msa0696190:intron | 50.0% |
| ! | AAGCACTTCCTGGTGCCAAT+CGG | + | chr4_4:66060492-66060511 | Msa0696190:CDS | 50.0% |
| CAATGGAGTTCCAATGGCCT+TGG | + | chr4_4:66060535-66060554 | Msa0696190:CDS | 50.0% | |
| GAGTTTGATGCCAAGGCCAT+TGG | - | chr4_4:66060548-66060567 | None:intergenic | 50.0% | |
| CCTTGGAGAGTTTGATGCCA+AGG | - | chr4_4:66060555-66060574 | None:intergenic | 50.0% | |
| CCTTGGCATCAAACTCTCCA+AGG | + | chr4_4:66060552-66060571 | Msa0696190:CDS | 50.0% | |
| !! | TTGGCATCGATGCTTTCCCT+TGG | - | chr4_4:66060572-66060591 | None:intergenic | 50.0% |
| GTATCTCACATGTCAGGGGA+AGG | - | chr4_4:66060776-66060795 | None:intergenic | 50.0% | |
| TCGATGACAAGACAGCTGGA+AGG | - | chr4_4:66060929-66060948 | None:intergenic | 50.0% | |
| GTCTTCGATGACAAGACAGC+TGG | - | chr4_4:66060933-66060952 | None:intergenic | 50.0% | |
| TCCAGACAGAATCACTGGAG+GGG | - | chr4_4:66061488-66061507 | None:intergenic | 50.0% | |
| GTCCAGACAGAATCACTGGA+GGG | - | chr4_4:66061489-66061508 | None:intergenic | 50.0% | |
| AGTCCAGACAGAATCACTGG+AGG | - | chr4_4:66061490-66061509 | None:intergenic | 50.0% | |
| GCAGACCATAACAAAAGGGG+AGG | - | chr4_4:66062128-66062147 | None:intergenic | 50.0% | |
| CTACTTGGCTACTTCAGACC+CGG | + | chr4_4:66062218-66062237 | Msa0696190:intron | 50.0% | |
| AGCCTTACCTGCAGTAACAC+CGG | - | chr4_4:66062240-66062259 | None:intergenic | 50.0% | |
| TAAGGCTGCTGAGATGGAAG+TGG | + | chr4_4:66062253-66062272 | Msa0696190:CDS | 50.0% | |
| TGAGACTGTTTCGGGAGTGA+TGG | - | chr4_4:66062287-66062306 | None:intergenic | 50.0% | |
| GGTCCTGTCATCAAGGGATT+TGG | + | chr4_4:66062531-66062550 | Msa0696190:CDS | 50.0% | |
| ! | CGACCAAATCCCTTGATGAC+AGG | - | chr4_4:66062537-66062556 | None:intergenic | 50.0% |
| ! | GTCATCAAGGGATTTGGTCG+TGG | + | chr4_4:66062537-66062556 | Msa0696190:CDS | 50.0% |
| ! | TGGGCTGGATTATCAGGAAG+AGG | + | chr4_4:66062890-66062909 | Msa0696190:CDS | 50.0% |
| CTATGGGGAAGAACTGAAGC+TGG | + | chr4_4:66063096-66063115 | Msa0696190:CDS | 50.0% | |
| AATTGGGCACTCTGCATAGC+AGG | + | chr4_4:66063213-66063232 | Msa0696190:intron | 50.0% | |
| GCGTGGTGATTAAGAACCAC+AGG | - | chr4_4:66063440-66063459 | None:intergenic | 50.0% | |
| TTGACTGCCTGCTGGCAATT+CGG | + | chr4_4:66063530-66063549 | Msa0696190:three_prime_UTR | 50.0% | |
| GGCACGTTGCTCAACACAGA+TGG | + | chr4_4:66059189-66059208 | Msa0696190:CDS | 55.0% | |
| GGTGAATCTAGTGTGCCCCT+AGG | - | chr4_4:66059662-66059681 | None:intergenic | 55.0% | |
| ! | AGAATCACTGGAGGGGGTGT+AGG | - | chr4_4:66061481-66061500 | None:intergenic | 55.0% |
| CCAGACAGAATCACTGGAGG+GGG | - | chr4_4:66061487-66061506 | None:intergenic | 55.0% | |
| !! | TTCAGACCCGGTGTTACTGC+AGG | + | chr4_4:66062230-66062249 | Msa0696190:intron | 55.0% |
| !! | ACCCGGTGTTACTGCAGGTA+AGG | + | chr4_4:66062235-66062254 | Msa0696190:CDS | 55.0% |
| GCCTTACCTGCAGTAACACC+GGG | - | chr4_4:66062239-66062258 | None:intergenic | 55.0% | |
| TGCAGGTAAGGCTGCTGAGA+TGG | + | chr4_4:66062247-66062266 | Msa0696190:CDS | 55.0% | |
| GGTCGTGGCTCGAAAGTTCT+CGG | + | chr4_4:66062552-66062571 | Msa0696190:CDS | 55.0% | |
| GTCGTGGCTCGAAAGTTCTC+GGG | + | chr4_4:66062553-66062572 | Msa0696190:CDS | 55.0% | |
| GGGGGAGACGAAGTTCGAAC+AGG | + | chr4_4:66060746-66060765 | Msa0696190:CDS | 60.0% | |
| CCCCCTCCAGTGATTCTGTC+TGG | + | chr4_4:66061484-66061503 | Msa0696190:intron | 60.0% | |
| ! | CTCCTTGCAGAGCATCCTGC+AGG | + | chr4_4:66062854-66062873 | Msa0696190:CDS | 60.0% |
| CTCCTGCAGGATGCTCTGCA+AGG | - | chr4_4:66062859-66062878 | None:intergenic | 60.0% | |
| GTAGGCTGCAGCCATACCTC+AGG | - | chr4_4:66063142-66063161 | None:intergenic | 60.0% | |
| GAGCGCTCTCCGCAACTCTA+CGG | - | chr4_4:66063285-66063304 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 66059138 | 66063554 | 66059138 | ID=Msa0696190;Name=Msa0696190 |
| chr4_4 | mRNA | 66059138 | 66063554 | 66059138 | ID=Msa0696190-mRNA-1;Parent=Msa0696190;Name=Msa0696190-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.87|0.88|1|0.87|0.88|9|194|347 |
| chr4_4 | exon | 66059138 | 66059301 | 66059138 | ID=Msa0696190-mRNA-1:exon:19165;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66060478 | 66060608 | 66060478 | ID=Msa0696190-mRNA-1:exon:19166;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66060717 | 66060786 | 66060717 | ID=Msa0696190-mRNA-1:exon:19167;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66060892 | 66060957 | 66060892 | ID=Msa0696190-mRNA-1:exon:19168;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66062235 | 66062389 | 66062235 | ID=Msa0696190-mRNA-1:exon:19169;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66062490 | 66062585 | 66062490 | ID=Msa0696190-mRNA-1:exon:19170;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66062825 | 66062976 | 66062825 | ID=Msa0696190-mRNA-1:exon:19171;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66063061 | 66063144 | 66063061 | ID=Msa0696190-mRNA-1:exon:19172;Parent=Msa0696190-mRNA-1 |
| chr4_4 | exon | 66063235 | 66063554 | 66063235 | ID=Msa0696190-mRNA-1:exon:19173;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66059138 | 66059301 | 66059138 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66060478 | 66060608 | 66060478 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66060717 | 66060786 | 66060717 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66060892 | 66060957 | 66060892 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66062235 | 66062389 | 66062235 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66062490 | 66062585 | 66062490 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66062825 | 66062976 | 66062825 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66063061 | 66063144 | 66063061 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | CDS | 66063235 | 66063360 | 66063235 | ID=Msa0696190-mRNA-1:cds;Parent=Msa0696190-mRNA-1 |
| chr4_4 | three_prime_UTR | 66063361 | 66063554 | 66063361 | ID=Msa0696190-mRNA-1:three_prime_utr;Parent=Msa0696190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
