AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0565710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565710 MtrunA17_Chr8g0379901 98.188 276 5 0 1 276 1 276 0.0 550
Msa0565710 MtrunA17_Chr8g0379911 73.585 265 70 0 4 268 3 267 6.03e-151 422
Msa0565710 MtrunA17_Chr2g0284581 71.218 271 78 0 4 274 3 273 2.85e-144 405
Msa0565710 MtrunA17_Chr2g0284591 68.340 259 82 0 13 271 10 268 3.62e-135 382
Msa0565710 MtrunA17_Chr2g0284631 64.706 272 89 2 4 268 55 326 1.69e-130 373
Msa0565710 MtrunA17_Chr2g0284611 65.789 266 91 0 4 269 3 268 1.47e-128 365
Msa0565710 MtrunA17_Chr2g0284601 74.545 220 56 0 55 274 6 225 1.14e-122 349
Msa0565710 MtrunA17_Chr4g0044201 51.292 271 113 3 9 273 1 258 4.43e-97 285
Msa0565710 MtrunA17_Chr5g0435051 50.775 258 119 4 1 254 1 254 2.10e-85 256
Msa0565710 MtrunA17_Chr3g0079421 53.556 239 108 2 19 257 8 243 2.59e-83 251
Msa0565710 MtrunA17_Chr4g0001221 53.680 231 102 2 35 263 71 298 5.17e-78 238
Msa0565710 MtrunA17_Chr2g0333771 52.863 227 102 2 39 263 80 303 3.50e-76 234
Msa0565710 MtrunA17_Chr7g0217331 48.148 216 111 1 37 252 35 249 9.77e-73 224
Msa0565710 MtrunA17_Chr1g0201331 49.362 235 108 3 34 260 69 300 1.94e-69 216
Msa0565710 MtrunA17_Chr5g0426131 46.442 267 117 8 4 261 10 259 1.06e-66 208
Msa0565710 MtrunA17_Chr1g0184541 40.271 221 131 1 33 253 56 275 4.06e-49 164
Msa0565710 MtrunA17_Chr4g0001111 52.000 150 67 2 35 182 71 217 5.40e-40 139
Msa0565710 MtrunA17_Chr4g0001161 49.645 141 66 2 52 190 1 138 3.11e-33 118
Msa0565710 MtrunA17_Chr4g0001121 56.098 82 36 0 182 263 10 91 1.96e-28 104
Msa0565710 MtrunA17_Chr8g0340161 33.028 218 139 3 38 248 18 235 1.14e-26 104
Msa0565710 MtrunA17_Chr2g0331261 32.645 242 145 7 34 264 15 249 2.33e-25 100
Msa0565710 MtrunA17_Chr5g0399341 33.047 233 139 5 38 257 18 246 8.11e-25 99.4
Msa0565710 MtrunA17_Chr4g0001151 45.865 133 52 3 52 182 1 115 1.22e-23 97.8
Msa0565710 MtrunA17_Chr1g0146161 31.120 241 145 8 13 246 3 229 1.85e-23 95.9
Msa0565710 MtrunA17_Chr1g0188771 32.444 225 143 5 38 254 20 243 2.33e-23 95.9
Msa0565710 MtrunA17_Chr6g0478191 32.159 227 141 5 38 254 20 243 6.24e-23 94.7
Msa0565710 MtrunA17_Chr1g0146171 31.102 254 148 11 13 255 3 240 1.01e-22 94.0
Msa0565710 MtrunA17_Chr3g0145671 31.222 221 137 5 37 242 35 255 1.19e-22 94.4
Msa0565710 MtrunA17_Chr7g0264961 33.180 217 135 6 38 246 20 234 3.38e-21 89.7
Msa0565710 MtrunA17_Chr1g0212671 32.759 232 142 7 38 257 20 249 5.73e-21 89.4
Msa0565710 MtrunA17_Chr2g0326621 30.837 227 133 6 39 242 40 265 1.14e-20 89.4
Msa0565710 MtrunA17_Chr7g0264111 30.357 224 133 6 37 238 37 259 3.42e-20 87.8
Msa0565710 MtrunA17_Chr4g0030861 32.287 223 142 5 44 258 26 247 4.06e-20 87.0
Msa0565710 MtrunA17_Chr4g0006001 28.409 264 164 8 1 248 26 280 8.20e-20 87.0
Msa0565710 MtrunA17_Chr1g0199731 28.390 236 142 5 37 248 37 269 9.46e-20 86.7
Msa0565710 MtrunA17_Chr8g0386961 28.369 282 173 9 2 259 11 287 1.56e-19 85.9
Msa0565710 MtrunA17_Chr4g0029071 30.568 229 134 7 37 242 37 263 7.81e-19 84.0
Msa0565710 MtrunA17_Chr5g0397391 29.289 239 145 7 30 248 43 277 8.97e-19 84.0
Msa0565710 MtrunA17_Chr5g0436701 29.707 239 145 7 37 256 53 287 9.88e-19 84.0
Msa0565710 MtrunA17_Chr3g0113211 26.236 263 177 6 10 256 26 287 1.84e-18 83.2
Msa0565710 MtrunA17_Chr4g0020781 31.492 181 121 2 75 253 20 199 1.94e-16 76.3
Msa0565710 MtrunA17_Chr7g0222791 27.706 231 160 3 38 261 20 250 1.82e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0565710 AT4G18910.1 71.486 249 64 1 33 274 46 294 3.17e-131 374
Msa0565710 AT4G19030.1 68.045 266 78 1 8 266 24 289 1.59e-128 367
Msa0565710 AT5G37820.1 60.000 235 94 0 39 273 43 277 2.40e-101 297
Msa0565710 AT5G37820.2 60.000 235 94 0 39 273 79 313 6.33e-101 298
Msa0565710 AT5G37810.1 53.333 270 119 2 3 266 2 270 6.26e-100 294
Msa0565710 AT1G31885.1 52.399 271 118 2 1 260 1 271 2.57e-98 291
Msa0565710 AT2G34390.1 53.101 258 113 2 17 267 26 282 7.44e-91 271
Msa0565710 AT4G18910.2 73.446 177 40 1 33 202 46 222 1.17e-89 265
Msa0565710 AT4G19030.3 65.672 201 62 1 8 201 24 224 6.52e-88 261
Msa0565710 AT1G31885.2 55.760 217 89 1 51 260 1 217 2.19e-86 259
Msa0565710 AT2G34390.2 53.782 238 102 2 37 267 4 240 2.62e-85 255
Msa0565710 AT4G19030.2 63.187 182 60 1 8 182 24 205 5.28e-76 231
Msa0565710 AT1G80760.1 50.820 244 113 3 12 253 55 293 3.20e-73 226
Msa0565710 AT4G10380.1 48.819 254 119 3 15 260 54 304 1.07e-72 225
Msa0565710 AT2G34390.3 55.959 193 77 2 17 202 26 217 1.45e-68 212
Msa0565710 AT2G34390.4 55.429 175 70 2 17 184 26 199 6.81e-62 195
Msa0565710 AT3G06100.1 38.057 247 150 3 10 254 16 261 7.80e-48 160
Msa0565710 AT3G06100.2 40.654 214 125 2 42 254 1 213 3.97e-47 157
Msa0565710 AT1G31885.3 48.936 141 65 2 1 134 1 141 1.60e-37 130
Msa0565710 AT3G16240.1 33.476 233 137 6 30 248 7 235 2.69e-29 112
Msa0565710 AT2G29870.1 52.688 93 44 0 154 246 20 112 7.43e-28 104
Msa0565710 AT5G47450.1 32.636 239 151 4 30 258 10 248 1.83e-27 107
Msa0565710 AT3G06100.3 38.298 141 85 2 115 254 41 180 3.04e-25 99.8
Msa0565710 AT4G17340.1 30.252 238 156 4 30 257 10 247 1.43e-24 99.4
Msa0565710 AT4G35100.1 31.579 228 141 5 30 242 29 256 2.39e-23 96.7
Msa0565710 AT4G35100.2 31.579 228 141 5 30 242 29 256 2.39e-23 96.7
Msa0565710 AT3G26520.1 33.486 218 138 3 38 248 21 238 7.48e-23 94.7
Msa0565710 AT1G17810.1 34.286 175 111 2 91 261 86 260 5.04e-22 92.8
Msa0565710 AT2G16850.1 30.769 221 138 5 37 242 34 254 5.12e-22 93.2
Msa0565710 AT2G36830.1 34.434 212 131 4 38 241 20 231 9.71e-22 91.7
Msa0565710 AT5G60660.1 29.362 235 143 6 36 248 36 269 6.44e-21 90.1
Msa0565710 AT2G39010.1 29.060 234 143 6 37 248 36 268 1.01e-20 89.7
Msa0565710 AT2G25810.1 32.420 219 135 7 38 248 18 231 2.86e-20 87.8
Msa0565710 AT1G73190.1 35.542 166 103 3 92 254 87 251 2.90e-20 88.2
Msa0565710 AT4G23400.1 28.629 248 155 6 30 259 44 287 6.85e-20 87.4
Msa0565710 AT2G37170.1 28.879 232 142 6 39 248 37 267 1.06e-19 87.0
Msa0565710 AT2G37170.2 28.879 232 142 6 39 248 80 310 1.25e-19 87.4
Msa0565710 AT3G61430.2 29.150 247 151 7 30 257 43 284 1.51e-19 86.3
Msa0565710 AT3G61430.1 29.150 247 151 7 30 257 43 284 1.51e-19 86.3
Msa0565710 AT4G01470.1 35.465 172 107 3 80 248 67 237 2.82e-19 85.1
Msa0565710 AT1G01620.1 29.412 238 145 5 30 248 43 276 3.00e-19 85.5
Msa0565710 AT3G54820.1 28.326 233 146 5 37 248 36 268 3.70e-19 85.5
Msa0565710 AT3G53420.1 28.755 233 145 6 37 248 37 269 4.36e-19 85.1
Msa0565710 AT3G53420.2 28.755 233 145 6 37 248 37 269 4.36e-19 85.1
Msa0565710 AT4G00430.1 27.509 269 170 6 2 248 12 277 4.54e-19 85.1
Msa0565710 AT2G45960.1 28.745 247 152 7 30 257 43 284 7.55e-19 84.3
Msa0565710 AT3G47440.1 29.224 219 145 4 38 248 22 238 2.87e-18 82.4
Msa0565710 AT2G37180.1 28.448 232 143 6 39 248 37 267 1.22e-17 81.3
Msa0565710 AT1G01620.2 31.720 186 107 4 69 238 13 194 1.46e-16 77.0
Msa0565710 AT2G45960.2 30.476 210 126 5 30 223 43 248 2.09e-16 77.4
Msa0565710 AT2G45960.3 30.476 210 126 5 30 223 43 248 2.16e-16 77.8
Msa0565710 AT2G39010.2 29.936 157 96 4 37 180 36 191 9.19e-12 63.5

Find 89 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTTACCATTTC+TGG 0.053365 4_1:-66575068 Msa0565710:CDS
TACACTCTCCATATTTATTT+TGG 0.109717 4_1:+66574195 None:intergenic
TTCCAATTGCTTAAACTATT+TGG 0.141022 4_1:+66574499 None:intergenic
ATATTTGCTGTCACCGATTT+TGG 0.177264 4_1:-66574631 Msa0565710:CDS
TCCTGGGATTGCAATTGTTT+GGG 0.194809 4_1:-66577764 Msa0565710:CDS
AAATTGGAGTCGTTTATTTC+AGG 0.239644 4_1:-66578186 None:intergenic
TCCTTGTTCTCTATCACTTA+TGG 0.247542 4_1:-66578110 Msa0565710:exon
GGTAGAAAGAAAACTAGTTT+TGG 0.295044 4_1:+66574232 None:intergenic
TTCCTGGGATTGCAATTGTT+TGG 0.304422 4_1:-66577765 Msa0565710:CDS
ATCAATTTAGCACCTTAATT+AGG 0.305497 4_1:+66574300 None:intergenic
CTGCATACACTTCCTAATTA+AGG 0.312351 4_1:-66574312 Msa0565710:three_prime_UTR
AAGGAGGTTTCCATTGTTAC+AGG 0.315994 4_1:-66577653 Msa0565710:intron
ACATATTTCTTGATATTTGC+AGG 0.316106 4_1:-66577835 Msa0565710:CDS
CTCTGTCCCTTTCTTGCAAA+AGG 0.317695 4_1:-66577993 Msa0565710:intron
AACCAAATAGTTTAAGCAAT+TGG 0.318401 4_1:-66574501 Msa0565710:exon
TTCATTGATGCTCCTGTTAC+CGG 0.336316 4_1:+66574711 None:intergenic
TGTAGACCCAATTGCAATTC+CGG 0.356826 4_1:+66574918 None:intergenic
TAATTAAGGTGCTAAATTGA+TGG 0.365761 4_1:-66574298 Msa0565710:three_prime_UTR
CAAGAAAGGGACAGAGATAA+AGG 0.377304 4_1:+66578000 None:intergenic
TTATTTGACAGGCCGGTAAC+AGG 0.383562 4_1:-66574723 Msa0565710:intron
TACTCACTTGGTCATATCTC+TGG 0.390477 4_1:-66577718 Msa0565710:CDS
CACCACGTCCAGCTTCTTTG+AGG 0.393717 4_1:+66574526 None:intergenic
TTGCTTAATGTGATGATTGC+AGG 0.400582 4_1:-66574892 Msa0565710:CDS
GACAACGTTGTAACACTTCC+TGG 0.408736 4_1:-66577781 Msa0565710:CDS
AATACAGTTAATAGCAGAAA+TGG 0.417887 4_1:-66577863 Msa0565710:intron
CTGCACATTAAAAGAAACTT+AGG 0.418065 4_1:+66574166 None:intergenic
GCTGGTCCTAGAGTTCTAAC+CGG 0.437239 4_1:+66574687 None:intergenic
TGTTTGGGGACTTACTTTGT+TGG 0.438567 4_1:-66577749 Msa0565710:CDS
GAGTTGGCCGGAATTGCAAT+TGG 0.443767 4_1:-66574925 Msa0565710:CDS
TTATATATCAGCTCAGCTCT+TGG 0.447897 4_1:-66575213 Msa0565710:CDS
CATGGGTCTACAACACTGTT+AGG 0.451802 4_1:-66574593 Msa0565710:CDS
CTTTGAGGAAGGATGCACTC+TGG 0.452465 4_1:+66574541 None:intergenic
TCTGCATACATGATACTAGA+TGG 0.455585 4_1:+66574468 None:intergenic
ATTCAAGAACAAAAGCTTGA+AGG 0.459020 4_1:+66575105 None:intergenic
AAGTGTATATATGATTATCA+AGG 0.459227 4_1:+66574070 None:intergenic
CTCCAGAAATGGTAAACATA+AGG 0.466289 4_1:+66575066 None:intergenic
ATCGGTGGCAACTCCAGAAA+TGG 0.467754 4_1:+66575055 None:intergenic
CCTGGGATTGCAATTGTTTG+GGG 0.472067 4_1:-66577763 Msa0565710:CDS
TATATATCAGCTCAGCTCTT+GGG 0.473337 4_1:-66575212 Msa0565710:CDS
TTTGAGGAAGGATGCACTCT+GGG 0.475411 4_1:+66574542 None:intergenic
AGTTGGCCGGAATTGCAATT+GGG 0.485520 4_1:-66574924 Msa0565710:CDS
GTAGACCCATGCTCCGGCGA+TGG 0.495881 4_1:+66574605 None:intergenic
TTGTATCTAAAACAACCTCA+TGG 0.499097 4_1:+66578059 None:intergenic
CCCCAAACAATTGCAATCCC+AGG 0.500215 4_1:+66577763 None:intergenic
GCATCCTTCCTCAAAGAAGC+TGG 0.504133 4_1:-66574534 Msa0565710:CDS
TACTCATTGTGTACAAAAGC+TGG 0.505829 4_1:+66574669 None:intergenic
GTGCAGAAGACCTTGATTCA+AGG 0.506676 4_1:-66574149 Msa0565710:three_prime_UTR
ACAATGAGTACAGAGGAATA+TGG 0.514676 4_1:-66574656 Msa0565710:CDS
TTGTAGATTGGTGAGTTGGC+CGG 0.514724 4_1:-66574937 Msa0565710:intron
TCACAAACATGTGAAGGCTC+TGG 0.518719 4_1:-66578025 Msa0565710:CDS
ATGAACCCGGTTAGAACTCT+AGG 0.519479 4_1:-66574693 Msa0565710:CDS
AGTGTATATATGATTATCAA+GGG 0.526044 4_1:+66574071 None:intergenic
TTTCAGGAACACTTCCATCT+GGG 0.526344 4_1:-66575133 Msa0565710:CDS
TGTATCTAAAACAACCTCAT+GGG 0.536127 4_1:+66578060 None:intergenic
GAGTCGTTTATTTCAGGCTG+AGG 0.536523 4_1:-66578180 None:intergenic
CTATATATGACCTTGAATCA+AGG 0.539301 4_1:+66574139 None:intergenic
AGCTGAGCTGATATATAAGC+TGG 0.541389 4_1:+66575218 None:intergenic
CTCAAAGAAGCTGGACGTGG+TGG 0.543311 4_1:-66574525 Msa0565710:CDS
TCGTTTATTTCAGGCTGAGG+AGG 0.544830 4_1:-66578177 Msa0565710:five_prime_UTR
ACAACGTTGTAACACTTCCT+GGG 0.548592 4_1:-66577780 Msa0565710:CDS
ACGTCCAGCTTCTTTGAGGA+AGG 0.549185 4_1:+66574530 None:intergenic
GCAAAAGCAATAGTAACAGC+AGG 0.549342 4_1:+66577682 None:intergenic
TTCCTCAAAGAAGCTGGACG+TGG 0.550380 4_1:-66574528 Msa0565710:CDS
TTGGTATTGATTTACTCACT+TGG 0.550812 4_1:-66577730 Msa0565710:CDS
GTTTGTGTGTAGTAGTACTA+AGG 0.555212 4_1:-66574380 Msa0565710:three_prime_UTR
TGAGTTTACCGCTCTAGTAT+CGG 0.558198 4_1:+66575037 None:intergenic
CTCTGGGTGATCTCACGCAA+TGG 0.559604 4_1:+66574558 None:intergenic
CTGGTCCTAGAGTTCTAACC+GGG 0.561868 4_1:+66574688 None:intergenic
TGCTTAATGTGATGATTGCA+GGG 0.567945 4_1:-66574891 Msa0565710:intron
GGTAAACATAAGGTAAAATG+TGG 0.569076 4_1:+66575076 None:intergenic
ATGGAAGTGTTCCTGAAAAG+TGG 0.569487 4_1:+66575138 None:intergenic
GCCATAAGTGATAGAGAACA+AGG 0.580173 4_1:+66578109 None:intergenic
ACAGTTAATAGCAGAAATGG+TGG 0.598028 4_1:-66577860 Msa0565710:intron
TCAAAGAAGCTGGACGTGGT+GGG 0.603447 4_1:-66574524 Msa0565710:CDS
AGTGTTGTAGACCCATGCTC+CGG 0.603956 4_1:+66574599 None:intergenic
GCTTGAAGGTTAGACCCAGA+TGG 0.605252 4_1:+66575119 None:intergenic
TTGGGAGCAACACTTGCTAG+TGG 0.608245 4_1:-66575194 Msa0565710:CDS
ACTCTAAAACTAATATTCAG+TGG 0.608319 4_1:-66575170 Msa0565710:CDS
GATTCCTCACAAACATGTGA+AGG 0.617028 4_1:-66578031 Msa0565710:CDS
GTAGTGTTGACCTGTAACAA+TGG 0.623661 4_1:+66577643 None:intergenic
TGCTTCAATAGTAGTGAACA+AGG 0.624250 4_1:-66577809 Msa0565710:CDS
AACAGGAGCATCAATGAACC+CGG 0.626218 4_1:-66574706 Msa0565710:CDS
AGAGCCTTCACATGTTTGTG+AGG 0.626868 4_1:+66578027 None:intergenic
CAGTTAATAGCAGAAATGGT+GGG 0.636357 4_1:-66577859 Msa0565710:CDS
GTTTACCGCTCTAGTATCGG+TGG 0.679010 4_1:+66575040 None:intergenic
AGCAAGAATTGAAACCCATG+AGG 0.683901 4_1:-66578074 Msa0565710:CDS
TTTGTACACAATGAGTACAG+AGG 0.696529 4_1:-66574663 Msa0565710:CDS
TAACAATGGAAACCTCCTTG+TGG 0.700560 4_1:+66577657 None:intergenic
AGTTGCCACCGATACTAGAG+CGG 0.735236 4_1:-66575045 Msa0565710:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATATATAAAAT+TGG - chr4_1:66575326-66575345 Msa0565710:intron 0.0%
!!! TTTTTTATTTTATTTTAAAA+AGG + chr4_1:66576371-66576390 None:intergenic 0.0%
!! TAAATAAATATATATAAAAT+TGG - chr4_1:66575326-66575345 Msa0565710:intron 0.0%
!!! TTTTTTATTTTATTTTAAAA+AGG + chr4_1:66576371-66576390 None:intergenic 0.0%
!! TATAGTATATTGAATTAATT+AGG - chr4_1:66574354-66574373 Msa0565710:three_prime_UTR 10.0%
!! ATATACAAAAATAAACTTTA+TGG + chr4_1:66574655-66574674 None:intergenic 10.0%
!!! AAACTATTTTTTTTTAATCT+TGG - chr4_1:66574757-66574776 Msa0565710:intron 10.0%
!!! AAAAAAGATTATTTTTTTAC+AGG + chr4_1:66574918-66574937 None:intergenic 10.0%
!!! TATTTAGAATTTACTATTAT+TGG + chr4_1:66575302-66575321 None:intergenic 10.0%
!!! TTTTTTTGACAAAAAAATTA+TGG - chr4_1:66575480-66575499 Msa0565710:intron 10.0%
!!! TAGATGTTAATTTTTTTTTT+TGG - chr4_1:66575930-66575949 Msa0565710:intron 10.0%
!!! GTATTTTTTATTTTTTTTGA+AGG - chr4_1:66576268-66576287 Msa0565710:intron 10.0%
!!! TTAATTTTGCATTTTTTTTA+TGG + chr4_1:66577443-66577462 None:intergenic 10.0%
!! TATAGTATATTGAATTAATT+AGG - chr4_1:66574354-66574373 Msa0565710:three_prime_UTR 10.0%
!! ATATACAAAAATAAACTTTA+TGG + chr4_1:66574655-66574674 None:intergenic 10.0%
!!! AAACTATTTTTTTTTAATCT+TGG - chr4_1:66574757-66574776 Msa0565710:intron 10.0%
!!! AAAAAAGATTATTTTTTTAC+AGG + chr4_1:66574918-66574937 None:intergenic 10.0%
!!! TATTTAGAATTTACTATTAT+TGG + chr4_1:66575302-66575321 None:intergenic 10.0%
!!! TTTTTTTGACAAAAAAATTA+TGG - chr4_1:66575480-66575499 Msa0565710:intron 10.0%
!!! TAGATGTTAATTTTTTTTTT+TGG - chr4_1:66575930-66575949 Msa0565710:intron 10.0%
!!! GTATTTTTTATTTTTTTTGA+AGG - chr4_1:66576268-66576287 Msa0565710:intron 10.0%
!!! TTAATTTTGCATTTTTTTTA+TGG + chr4_1:66577443-66577462 None:intergenic 10.0%
!! TACAAATTGAGTTAAAAAAA+GGG + chr4_1:66574879-66574898 None:intergenic 15.0%
!! TTACAAATTGAGTTAAAAAA+AGG + chr4_1:66574880-66574899 None:intergenic 15.0%
!!! TGTAACTTTTTATTAAATGA+TGG + chr4_1:66575008-66575027 None:intergenic 15.0%
!!! TTTGATAACCTTTAAAATTT+GGG + chr4_1:66575180-66575199 None:intergenic 15.0%
!!! TTTTGATAACCTTTAAAATT+TGG + chr4_1:66575181-66575200 None:intergenic 15.0%
!!! ATTGTGGTAAAAATAATTTT+TGG + chr4_1:66575707-66575726 None:intergenic 15.0%
!! AAAAAATTAACATCTACAAT+TGG + chr4_1:66575926-66575945 None:intergenic 15.0%
!!! TTAATTTTTTTTTTTGGTAG+TGG - chr4_1:66575936-66575955 Msa0565710:intron 15.0%
!! ATAATGTTAAATTACATTTG+AGG - chr4_1:66576246-66576265 Msa0565710:intron 15.0%
!! ACATTTAAAGAGTTAAATAA+AGG + chr4_1:66576345-66576364 None:intergenic 15.0%
!! TTATTTAACTCTTTAAATGT+TGG - chr4_1:66576345-66576364 Msa0565710:intron 15.0%
!! ATAAAAAACTCTTTAAATGT+TGG - chr4_1:66576383-66576402 Msa0565710:intron 15.0%
!!! TGATAATGAGAAAATAAAAA+TGG - chr4_1:66577854-66577873 Msa0565710:CDS 15.0%
!! ACAAAAATCCAAAATAAATA+TGG - chr4_1:66578053-66578072 Msa0565710:CDS 15.0%
!! TACAAATTGAGTTAAAAAAA+GGG + chr4_1:66574879-66574898 None:intergenic 15.0%
!! TTACAAATTGAGTTAAAAAA+AGG + chr4_1:66574880-66574899 None:intergenic 15.0%
!!! TGTAACTTTTTATTAAATGA+TGG + chr4_1:66575008-66575027 None:intergenic 15.0%
!!! TTTGATAACCTTTAAAATTT+GGG + chr4_1:66575180-66575199 None:intergenic 15.0%
!!! TTTTGATAACCTTTAAAATT+TGG + chr4_1:66575181-66575200 None:intergenic 15.0%
!!! ATTGTGGTAAAAATAATTTT+TGG + chr4_1:66575707-66575726 None:intergenic 15.0%
!! AAAAAATTAACATCTACAAT+TGG + chr4_1:66575926-66575945 None:intergenic 15.0%
!!! TTAATTTTTTTTTTTGGTAG+TGG - chr4_1:66575936-66575955 Msa0565710:intron 15.0%
!! ATAATGTTAAATTACATTTG+AGG - chr4_1:66576246-66576265 Msa0565710:intron 15.0%
!! ACATTTAAAGAGTTAAATAA+AGG + chr4_1:66576345-66576364 None:intergenic 15.0%
!! TTATTTAACTCTTTAAATGT+TGG - chr4_1:66576345-66576364 Msa0565710:intron 15.0%
!! ATAAAAAACTCTTTAAATGT+TGG - chr4_1:66576383-66576402 Msa0565710:intron 15.0%
!!! TGATAATGAGAAAATAAAAA+TGG - chr4_1:66577854-66577873 Msa0565710:CDS 15.0%
!! ACAAAAATCCAAAATAAATA+TGG - chr4_1:66578053-66578072 Msa0565710:CDS 15.0%
!! AGATAATTATACCGAAAAAA+TGG + chr4_1:66574795-66574814 None:intergenic 20.0%
!! ACAAATTGAGTTAAAAAAAG+GGG + chr4_1:66574878-66574897 None:intergenic 20.0%
!!! GACTTAAAAGTTTTGTTTTT+TGG + chr4_1:66574947-66574966 None:intergenic 20.0%
!! TTTATTAAATGATGGTAAGT+TGG + chr4_1:66575000-66575019 None:intergenic 20.0%
!! ACAATATATAGAATAACAAG+TGG - chr4_1:66575088-66575107 Msa0565710:CDS 20.0%
!!! TGATATTTTCATGTAAAATC+AGG + chr4_1:66575251-66575270 None:intergenic 20.0%
!!! TTGGTTTAAAATTAATGTCA+AGG + chr4_1:66575283-66575302 None:intergenic 20.0%
!!! CCTAATAAATTGAAGAATTT+TGG + chr4_1:66575602-66575621 None:intergenic 20.0%
!! CCAAAATTCTTCAATTTATT+AGG - chr4_1:66575599-66575618 Msa0565710:intron 20.0%
!!! TTTTATTTTTTTTGAAGGAG+AGG - chr4_1:66576273-66576292 Msa0565710:intron 20.0%
!! AAATGACACTTAAAAAAGAA+CGG + chr4_1:66576510-66576529 None:intergenic 20.0%
!!! TCTTTTTTAAGTGTCATTTT+TGG - chr4_1:66576511-66576530 Msa0565710:intron 20.0%
!! GTAATATTTATTGAATGTCT+TGG - chr4_1:66576706-66576725 Msa0565710:intron 20.0%
!!! TACAAACATATTTAGTTTTG+TGG - chr4_1:66576883-66576902 Msa0565710:intron 20.0%
!!! ACAAACATATTTAGTTTTGT+GGG - chr4_1:66576884-66576903 Msa0565710:intron 20.0%
!! AATTGTAAAATAGAAAAGAC+TGG - chr4_1:66576913-66576932 Msa0565710:intron 20.0%
!! TACCTATAAGAATTATACAA+AGG + chr4_1:66577018-66577037 None:intergenic 20.0%
!!! ATATTCTATGTTTTGTAGAT+TGG - chr4_1:66577307-66577326 Msa0565710:intron 20.0%
!!! TAGTAATTTTGCATTTAACT+AGG + chr4_1:66577413-66577432 None:intergenic 20.0%
!! AGATAATTATACCGAAAAAA+TGG + chr4_1:66574795-66574814 None:intergenic 20.0%
!! ACAAATTGAGTTAAAAAAAG+GGG + chr4_1:66574878-66574897 None:intergenic 20.0%
!!! GACTTAAAAGTTTTGTTTTT+TGG + chr4_1:66574947-66574966 None:intergenic 20.0%
!! TTTATTAAATGATGGTAAGT+TGG + chr4_1:66575000-66575019 None:intergenic 20.0%
!! ACAATATATAGAATAACAAG+TGG - chr4_1:66575088-66575107 Msa0565710:CDS 20.0%
!!! TGATATTTTCATGTAAAATC+AGG + chr4_1:66575251-66575270 None:intergenic 20.0%
!!! TTGGTTTAAAATTAATGTCA+AGG + chr4_1:66575283-66575302 None:intergenic 20.0%
!!! CCTAATAAATTGAAGAATTT+TGG + chr4_1:66575602-66575621 None:intergenic 20.0%
!! CCAAAATTCTTCAATTTATT+AGG - chr4_1:66575599-66575618 Msa0565710:intron 20.0%
!!! TTTTATTTTTTTTGAAGGAG+AGG - chr4_1:66576273-66576292 Msa0565710:intron 20.0%
!! AAATGACACTTAAAAAAGAA+CGG + chr4_1:66576510-66576529 None:intergenic 20.0%
!!! TCTTTTTTAAGTGTCATTTT+TGG - chr4_1:66576511-66576530 Msa0565710:intron 20.0%
!! GTAATATTTATTGAATGTCT+TGG - chr4_1:66576706-66576725 Msa0565710:intron 20.0%
!!! TACAAACATATTTAGTTTTG+TGG - chr4_1:66576883-66576902 Msa0565710:intron 20.0%
!!! ACAAACATATTTAGTTTTGT+GGG - chr4_1:66576884-66576903 Msa0565710:intron 20.0%
!! AATTGTAAAATAGAAAAGAC+TGG - chr4_1:66576913-66576932 Msa0565710:intron 20.0%
!! TACCTATAAGAATTATACAA+AGG + chr4_1:66577018-66577037 None:intergenic 20.0%
!!! ATATTCTATGTTTTGTAGAT+TGG - chr4_1:66577307-66577326 Msa0565710:intron 20.0%
!!! TAGTAATTTTGCATTTAACT+AGG + chr4_1:66577413-66577432 None:intergenic 20.0%
!!! TTAATTAGGCTTTGTTTTGT+TGG - chr4_1:66574368-66574387 Msa0565710:three_prime_UTR 25.0%
! AATACAGTTAATAGCAGAAA+TGG - chr4_1:66574393-66574412 Msa0565710:three_prime_UTR 25.0%
! ACATATTTCTTGATATTTGC+AGG - chr4_1:66574421-66574440 Msa0565710:three_prime_UTR 25.0%
!!! TTCTTGATTAGCCATTTTTT+CGG - chr4_1:66574781-66574800 Msa0565710:intron 25.0%
! AAAGAGTCTTAATTTCTTGT+GGG + chr4_1:66574823-66574842 None:intergenic 25.0%
! TAAAGAGTCTTAATTTCTTG+TGG + chr4_1:66574824-66574843 None:intergenic 25.0%
!! TTTTCAATTTCAAGAGAAGT+GGG + chr4_1:66574850-66574869 None:intergenic 25.0%
! AAATTGAGTTAAAAAAAGGG+GGG + chr4_1:66574876-66574895 None:intergenic 25.0%
! CAAATTGAGTTAAAAAAAGG+GGG + chr4_1:66574877-66574896 None:intergenic 25.0%
! AACGATATCACTTTACAATT+CGG - chr4_1:66575129-66575148 Msa0565710:CDS 25.0%
!! TAATCCAACCCAAATTTTAA+AGG - chr4_1:66575169-66575188 Msa0565710:CDS 25.0%
!!! ATAACCTTTAAAATTTGGGT+TGG + chr4_1:66575176-66575195 None:intergenic 25.0%
! TGATATTTCTTAAAGCACAT+GGG - chr4_1:66575517-66575536 Msa0565710:intron 25.0%
!! TTTTCATTTAGGAGCTTTTA+CGG + chr4_1:66575627-66575646 None:intergenic 25.0%
!! TTCAACGAGTATTTTCATTT+AGG + chr4_1:66575638-66575657 None:intergenic 25.0%
! AACTAAGTAACATGATTTCT+TGG + chr4_1:66575681-66575700 None:intergenic 25.0%
! TTCATAATTGCATAACATTG+TGG + chr4_1:66575723-66575742 None:intergenic 25.0%
! ATTATGAATCATCCTTTGTA+TGG - chr4_1:66575735-66575754 Msa0565710:intron 25.0%
! ACATCTACAATTGGATAAAA+TGG + chr4_1:66575917-66575936 None:intergenic 25.0%
!!! TTTTTTTTTTTGGTAGTGGT+CGG - chr4_1:66575940-66575959 Msa0565710:intron 25.0%
! AACAATGCATAAAATATGCA+AGG + chr4_1:66575981-66576000 None:intergenic 25.0%
!!! CTCTTTTTCTTAATTTGTTG+CGG - chr4_1:66576047-66576066 Msa0565710:intron 25.0%
! GACAAAGTGTGATATTTAAT+TGG - chr4_1:66576102-66576121 Msa0565710:intron 25.0%
!! TTGTTCTGTGAAAAAAGTTT+TGG + chr4_1:66576138-66576157 None:intergenic 25.0%
! CATAATCTATGATTGAGTTT+CGG - chr4_1:66576173-66576192 Msa0565710:intron 25.0%
! TAAACAAGTGATATGTGATA+TGG - chr4_1:66576442-66576461 Msa0565710:intron 25.0%
! TAAATAACTAAGGGTAATGT+TGG + chr4_1:66576602-66576621 None:intergenic 25.0%
! TTACCCTTAGTTATTTATTG+TGG - chr4_1:66576605-66576624 Msa0565710:intron 25.0%
! TCTCCACAATAAATAACTAA+GGG + chr4_1:66576611-66576630 None:intergenic 25.0%
! AGTGACACTTAAAAAAAGAA+CGG - chr4_1:66576748-66576767 Msa0565710:intron 25.0%
!!! CACTGTTCATCTTTTAAAAA+TGG + chr4_1:66576826-66576845 None:intergenic 25.0%
!!! CATTTTTAAAAGATGAACAG+TGG - chr4_1:66576824-66576843 Msa0565710:intron 25.0%
!!! CAAACATATTTAGTTTTGTG+GGG - chr4_1:66576885-66576904 Msa0565710:intron 25.0%
!! CTTATTAATTTTCCCATGAT+GGG + chr4_1:66576972-66576991 None:intergenic 25.0%
!! ACTTATTAATTTTCCCATGA+TGG + chr4_1:66576973-66576992 None:intergenic 25.0%
! CTATAAGAATTATACAAAGG+AGG + chr4_1:66577015-66577034 None:intergenic 25.0%
! CTCCTTTGTATAATTCTTAT+AGG - chr4_1:66577013-66577032 Msa0565710:intron 25.0%
!!! ACTCTAAAACTAATATTCAG+TGG - chr4_1:66577086-66577105 Msa0565710:intron 25.0%
!! ATTTTGCATTTAACTAGGTT+CGG + chr4_1:66577408-66577427 None:intergenic 25.0%
!!! ATGTCACTTTTTTATTTGAC+AGG - chr4_1:66577522-66577541 Msa0565710:intron 25.0%
! AACCAAATAGTTTAAGCAAT+TGG - chr4_1:66577755-66577774 Msa0565710:CDS 25.0%
! TTCCAATTGCTTAAACTATT+TGG + chr4_1:66577760-66577779 None:intergenic 25.0%
! ATCAATTTAGCACCTTAATT+AGG + chr4_1:66577959-66577978 None:intergenic 25.0%
!! TAATTAAGGTGCTAAATTGA+TGG - chr4_1:66577958-66577977 Msa0565710:intron 25.0%
!!! ATTTTGGATTTTTGTTTCTC+TGG + chr4_1:66578048-66578067 None:intergenic 25.0%
!! TACACTCTCCATATTTATTT+TGG + chr4_1:66578064-66578083 None:intergenic 25.0%
!!! TTAATTAGGCTTTGTTTTGT+TGG - chr4_1:66574368-66574387 Msa0565710:three_prime_UTR 25.0%
! AATACAGTTAATAGCAGAAA+TGG - chr4_1:66574393-66574412 Msa0565710:three_prime_UTR 25.0%
! ACATATTTCTTGATATTTGC+AGG - chr4_1:66574421-66574440 Msa0565710:three_prime_UTR 25.0%
!!! TTCTTGATTAGCCATTTTTT+CGG - chr4_1:66574781-66574800 Msa0565710:intron 25.0%
! AAAGAGTCTTAATTTCTTGT+GGG + chr4_1:66574823-66574842 None:intergenic 25.0%
! TAAAGAGTCTTAATTTCTTG+TGG + chr4_1:66574824-66574843 None:intergenic 25.0%
!! TTTTCAATTTCAAGAGAAGT+GGG + chr4_1:66574850-66574869 None:intergenic 25.0%
! AAATTGAGTTAAAAAAAGGG+GGG + chr4_1:66574876-66574895 None:intergenic 25.0%
! CAAATTGAGTTAAAAAAAGG+GGG + chr4_1:66574877-66574896 None:intergenic 25.0%
! AACGATATCACTTTACAATT+CGG - chr4_1:66575129-66575148 Msa0565710:CDS 25.0%
!! TAATCCAACCCAAATTTTAA+AGG - chr4_1:66575169-66575188 Msa0565710:CDS 25.0%
!!! ATAACCTTTAAAATTTGGGT+TGG + chr4_1:66575176-66575195 None:intergenic 25.0%
! TGATATTTCTTAAAGCACAT+GGG - chr4_1:66575517-66575536 Msa0565710:intron 25.0%
!! TTTTCATTTAGGAGCTTTTA+CGG + chr4_1:66575627-66575646 None:intergenic 25.0%
!! TTCAACGAGTATTTTCATTT+AGG + chr4_1:66575638-66575657 None:intergenic 25.0%
! AACTAAGTAACATGATTTCT+TGG + chr4_1:66575681-66575700 None:intergenic 25.0%
! TTCATAATTGCATAACATTG+TGG + chr4_1:66575723-66575742 None:intergenic 25.0%
! ATTATGAATCATCCTTTGTA+TGG - chr4_1:66575735-66575754 Msa0565710:intron 25.0%
! ACATCTACAATTGGATAAAA+TGG + chr4_1:66575917-66575936 None:intergenic 25.0%
!!! TTTTTTTTTTTGGTAGTGGT+CGG - chr4_1:66575940-66575959 Msa0565710:intron 25.0%
! AACAATGCATAAAATATGCA+AGG + chr4_1:66575981-66576000 None:intergenic 25.0%
!!! CTCTTTTTCTTAATTTGTTG+CGG - chr4_1:66576047-66576066 Msa0565710:intron 25.0%
! GACAAAGTGTGATATTTAAT+TGG - chr4_1:66576102-66576121 Msa0565710:intron 25.0%
!! TTGTTCTGTGAAAAAAGTTT+TGG + chr4_1:66576138-66576157 None:intergenic 25.0%
! CATAATCTATGATTGAGTTT+CGG - chr4_1:66576173-66576192 Msa0565710:intron 25.0%
! TAAACAAGTGATATGTGATA+TGG - chr4_1:66576442-66576461 Msa0565710:intron 25.0%
! TAAATAACTAAGGGTAATGT+TGG + chr4_1:66576602-66576621 None:intergenic 25.0%
! TTACCCTTAGTTATTTATTG+TGG - chr4_1:66576605-66576624 Msa0565710:intron 25.0%
! TCTCCACAATAAATAACTAA+GGG + chr4_1:66576611-66576630 None:intergenic 25.0%
! AGTGACACTTAAAAAAAGAA+CGG - chr4_1:66576748-66576767 Msa0565710:intron 25.0%
!!! CACTGTTCATCTTTTAAAAA+TGG + chr4_1:66576826-66576845 None:intergenic 25.0%
!!! CATTTTTAAAAGATGAACAG+TGG - chr4_1:66576824-66576843 Msa0565710:intron 25.0%
!!! CAAACATATTTAGTTTTGTG+GGG - chr4_1:66576885-66576904 Msa0565710:intron 25.0%
!! CTTATTAATTTTCCCATGAT+GGG + chr4_1:66576972-66576991 None:intergenic 25.0%
!! ACTTATTAATTTTCCCATGA+TGG + chr4_1:66576973-66576992 None:intergenic 25.0%
! CTATAAGAATTATACAAAGG+AGG + chr4_1:66577015-66577034 None:intergenic 25.0%
! CTCCTTTGTATAATTCTTAT+AGG - chr4_1:66577013-66577032 Msa0565710:intron 25.0%
!!! ACTCTAAAACTAATATTCAG+TGG - chr4_1:66577086-66577105 Msa0565710:intron 25.0%
!! ATTTTGCATTTAACTAGGTT+CGG + chr4_1:66577408-66577427 None:intergenic 25.0%
!!! ATGTCACTTTTTTATTTGAC+AGG - chr4_1:66577522-66577541 Msa0565710:intron 25.0%
! AACCAAATAGTTTAAGCAAT+TGG - chr4_1:66577755-66577774 Msa0565710:CDS 25.0%
! TTCCAATTGCTTAAACTATT+TGG + chr4_1:66577760-66577779 None:intergenic 25.0%
! ATCAATTTAGCACCTTAATT+AGG + chr4_1:66577959-66577978 None:intergenic 25.0%
!! TAATTAAGGTGCTAAATTGA+TGG - chr4_1:66577958-66577977 Msa0565710:intron 25.0%
!!! ATTTTGGATTTTTGTTTCTC+TGG + chr4_1:66578048-66578067 None:intergenic 25.0%
!! TACACTCTCCATATTTATTT+TGG + chr4_1:66578064-66578083 None:intergenic 25.0%
! TGTATCTAAAACAACCTCAT+GGG + chr4_1:66574199-66574218 None:intergenic 30.0%
! TTGTATCTAAAACAACCTCA+TGG + chr4_1:66574200-66574219 None:intergenic 30.0%
!!! GGTTGTTTTAGATACAAACA+AGG - chr4_1:66574203-66574222 Msa0565710:three_prime_UTR 30.0%
GAGTTTGTAAAGGAAAGATT+AGG + chr4_1:66574294-66574313 None:intergenic 30.0%
CTATGTGTATGAGTTTGTAA+AGG + chr4_1:66574304-66574323 None:intergenic 30.0%
!! TTGGTATTGATTTACTCACT+TGG - chr4_1:66574526-66574545 Msa0565710:CDS 30.0%
! TTTTCGGTATAATTATCTGC+AGG - chr4_1:66574797-66574816 Msa0565710:intron 30.0%
! GTTTTCAATTTCAAGAGAAG+TGG + chr4_1:66574851-66574870 None:intergenic 30.0%
!! ACTTTACAATTCGGTTTTGT+AGG - chr4_1:66575138-66575157 Msa0565710:CDS 30.0%
!! CTTTACAATTCGGTTTTGTA+GGG - chr4_1:66575139-66575158 Msa0565710:CDS 30.0%
GTGATATTTCTTAAAGCACA+TGG - chr4_1:66575516-66575535 Msa0565710:intron 30.0%
! CTTCTTAATTTTCCCATGAT+GGG - chr4_1:66575778-66575797 Msa0565710:intron 30.0%
TAAAATGGAGGGAAAATACA+AGG + chr4_1:66575885-66575904 None:intergenic 30.0%
CTACAATTGGATAAAATGGA+GGG + chr4_1:66575913-66575932 None:intergenic 30.0%
TCTACAATTGGATAAAATGG+AGG + chr4_1:66575914-66575933 None:intergenic 30.0%
!!! TTTTTTTTTTGGTAGTGGTC+GGG - chr4_1:66575941-66575960 Msa0565710:intron 30.0%
CTCTCCACAATAAATAACTA+AGG + chr4_1:66576612-66576631 None:intergenic 30.0%
ATTCAAGAACAAAAGCTTGA+AGG + chr4_1:66577154-66577173 None:intergenic 30.0%
GGTAAACATAAGGTAAAATG+TGG + chr4_1:66577183-66577202 None:intergenic 30.0%
TACCTTATGTTTACCATTTC+TGG - chr4_1:66577188-66577207 Msa0565710:intron 30.0%
! TTTTGCATTTAACTAGGTTC+GGG + chr4_1:66577407-66577426 None:intergenic 30.0%
CATGTCTCACTTTACAAATT+CGG + chr4_1:66577505-66577524 None:intergenic 30.0%
!! GGTAGAAAGAAAACTAGTTT+TGG + chr4_1:66578027-66578046 None:intergenic 30.0%
CTGCACATTAAAAGAAACTT+AGG + chr4_1:66578093-66578112 None:intergenic 30.0%
CTATATATGACCTTGAATCA+AGG + chr4_1:66578120-66578139 None:intergenic 30.0%
! TGTATCTAAAACAACCTCAT+GGG + chr4_1:66574199-66574218 None:intergenic 30.0%
! TTGTATCTAAAACAACCTCA+TGG + chr4_1:66574200-66574219 None:intergenic 30.0%
!!! GGTTGTTTTAGATACAAACA+AGG - chr4_1:66574203-66574222 Msa0565710:three_prime_UTR 30.0%
GAGTTTGTAAAGGAAAGATT+AGG + chr4_1:66574294-66574313 None:intergenic 30.0%
CTATGTGTATGAGTTTGTAA+AGG + chr4_1:66574304-66574323 None:intergenic 30.0%
!! TTGGTATTGATTTACTCACT+TGG - chr4_1:66574526-66574545 Msa0565710:CDS 30.0%
! TTTTCGGTATAATTATCTGC+AGG - chr4_1:66574797-66574816 Msa0565710:intron 30.0%
! GTTTTCAATTTCAAGAGAAG+TGG + chr4_1:66574851-66574870 None:intergenic 30.0%
!! ACTTTACAATTCGGTTTTGT+AGG - chr4_1:66575138-66575157 Msa0565710:CDS 30.0%
!! CTTTACAATTCGGTTTTGTA+GGG - chr4_1:66575139-66575158 Msa0565710:CDS 30.0%
GTGATATTTCTTAAAGCACA+TGG - chr4_1:66575516-66575535 Msa0565710:intron 30.0%
! CTTCTTAATTTTCCCATGAT+GGG - chr4_1:66575778-66575797 Msa0565710:intron 30.0%
TAAAATGGAGGGAAAATACA+AGG + chr4_1:66575885-66575904 None:intergenic 30.0%
CTACAATTGGATAAAATGGA+GGG + chr4_1:66575913-66575932 None:intergenic 30.0%
TCTACAATTGGATAAAATGG+AGG + chr4_1:66575914-66575933 None:intergenic 30.0%
!!! TTTTTTTTTTGGTAGTGGTC+GGG - chr4_1:66575941-66575960 Msa0565710:intron 30.0%
CTCTCCACAATAAATAACTA+AGG + chr4_1:66576612-66576631 None:intergenic 30.0%
ATTCAAGAACAAAAGCTTGA+AGG + chr4_1:66577154-66577173 None:intergenic 30.0%
GGTAAACATAAGGTAAAATG+TGG + chr4_1:66577183-66577202 None:intergenic 30.0%
TACCTTATGTTTACCATTTC+TGG - chr4_1:66577188-66577207 Msa0565710:intron 30.0%
! TTTTGCATTTAACTAGGTTC+GGG + chr4_1:66577407-66577426 None:intergenic 30.0%
CATGTCTCACTTTACAAATT+CGG + chr4_1:66577505-66577524 None:intergenic 30.0%
!! GGTAGAAAGAAAACTAGTTT+TGG + chr4_1:66578027-66578046 None:intergenic 30.0%
CTGCACATTAAAAGAAACTT+AGG + chr4_1:66578093-66578112 None:intergenic 30.0%
CTATATATGACCTTGAATCA+AGG + chr4_1:66578120-66578139 None:intergenic 30.0%
TCCTTGTTCTCTATCACTTA+TGG - chr4_1:66574146-66574165 Msa0565710:three_prime_UTR 35.0%
ACAGTTAATAGCAGAAATGG+TGG - chr4_1:66574396-66574415 Msa0565710:three_prime_UTR 35.0%
CAGTTAATAGCAGAAATGGT+GGG - chr4_1:66574397-66574416 Msa0565710:three_prime_UTR 35.0%
TGCTTCAATAGTAGTGAACA+AGG - chr4_1:66574447-66574466 Msa0565710:three_prime_UTR 35.0%
ATGAATCATCCTTTGTATGG+TGG - chr4_1:66575738-66575757 Msa0565710:intron 35.0%
TCATAAATGCCACCATACAA+AGG + chr4_1:66575750-66575769 None:intergenic 35.0%
TTGTATGGTGGCATTTATGA+TGG - chr4_1:66575750-66575769 Msa0565710:intron 35.0%
TGTATGGTGGCATTTATGAT+GGG - chr4_1:66575751-66575770 Msa0565710:intron 35.0%
! GCTTCTTAATTTTCCCATGA+TGG - chr4_1:66575777-66575796 Msa0565710:intron 35.0%
AATGGCCTAGATATGAGATT+GGG - chr4_1:66575841-66575860 Msa0565710:intron 35.0%
TACAAGGTGATTGGTAGAAA+AGG + chr4_1:66575869-66575888 None:intergenic 35.0%
AAATGGAGGGAAGGATAAAA+TGG + chr4_1:66575900-66575919 None:intergenic 35.0%
AATTGGATAAAATGGAGGGA+AGG + chr4_1:66575909-66575928 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr4_1:66575976-66575995 None:intergenic 35.0%
TGACACTTAAAAAAGAACGG+AGG + chr4_1:66576507-66576526 None:intergenic 35.0%
GACACTTAAAAAAAGAACGG+AGG - chr4_1:66576751-66576770 Msa0565710:intron 35.0%
ATAGAAAAGACTGGTACTAC+TGG - chr4_1:66576922-66576941 Msa0565710:intron 35.0%
TTATATATCAGCTCAGCTCT+TGG - chr4_1:66577043-66577062 Msa0565710:intron 35.0%
TATATATCAGCTCAGCTCTT+GGG - chr4_1:66577044-66577063 Msa0565710:intron 35.0%
CTCCAGAAATGGTAAACATA+AGG + chr4_1:66577193-66577212 None:intergenic 35.0%
! TGTTTTGTAGATTGGTGAGT+TGG - chr4_1:66577315-66577334 Msa0565710:intron 35.0%
TTGCTTAATGTGATGATTGC+AGG - chr4_1:66577364-66577383 Msa0565710:intron 35.0%
TGCTTAATGTGATGATTGCA+GGG - chr4_1:66577365-66577384 Msa0565710:intron 35.0%
ATTTAACTAGGTTCGGGATA+GGG + chr4_1:66577401-66577420 None:intergenic 35.0%
!!! CACTTTTTTATTTGACAGGC+CGG - chr4_1:66577526-66577545 Msa0565710:intron 35.0%
TACTCATTGTGTACAAAAGC+TGG + chr4_1:66577590-66577609 None:intergenic 35.0%
TTTGTACACAATGAGTACAG+AGG - chr4_1:66577593-66577612 Msa0565710:intron 35.0%
ACAATGAGTACAGAGGAATA+TGG - chr4_1:66577600-66577619 Msa0565710:intron 35.0%
!!! ATATTTGCTGTCACCGATTT+TGG - chr4_1:66577625-66577644 Msa0565710:intron 35.0%
!!! TATTTGCTGTCACCGATTTT+GGG - chr4_1:66577626-66577645 Msa0565710:intron 35.0%
TCTGCATACATGATACTAGA+TGG + chr4_1:66577791-66577810 None:intergenic 35.0%
GTTTGTGTGTAGTAGTACTA+AGG - chr4_1:66577876-66577895 Msa0565710:intron 35.0%
!!! TGATCCTGTGCAGTTTTAAA+AGG - chr4_1:66577911-66577930 Msa0565710:intron 35.0%
CTGCATACACTTCCTAATTA+AGG - chr4_1:66577944-66577963 Msa0565710:intron 35.0%
TCCTTGTTCTCTATCACTTA+TGG - chr4_1:66574146-66574165 Msa0565710:three_prime_UTR 35.0%
ACAGTTAATAGCAGAAATGG+TGG - chr4_1:66574396-66574415 Msa0565710:three_prime_UTR 35.0%
CAGTTAATAGCAGAAATGGT+GGG - chr4_1:66574397-66574416 Msa0565710:three_prime_UTR 35.0%
TGCTTCAATAGTAGTGAACA+AGG - chr4_1:66574447-66574466 Msa0565710:three_prime_UTR 35.0%
ATGAATCATCCTTTGTATGG+TGG - chr4_1:66575738-66575757 Msa0565710:intron 35.0%
TCATAAATGCCACCATACAA+AGG + chr4_1:66575750-66575769 None:intergenic 35.0%
TTGTATGGTGGCATTTATGA+TGG - chr4_1:66575750-66575769 Msa0565710:intron 35.0%
TGTATGGTGGCATTTATGAT+GGG - chr4_1:66575751-66575770 Msa0565710:intron 35.0%
! GCTTCTTAATTTTCCCATGA+TGG - chr4_1:66575777-66575796 Msa0565710:intron 35.0%
AATGGCCTAGATATGAGATT+GGG - chr4_1:66575841-66575860 Msa0565710:intron 35.0%
TACAAGGTGATTGGTAGAAA+AGG + chr4_1:66575869-66575888 None:intergenic 35.0%
AAATGGAGGGAAGGATAAAA+TGG + chr4_1:66575900-66575919 None:intergenic 35.0%
AATTGGATAAAATGGAGGGA+AGG + chr4_1:66575909-66575928 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr4_1:66575976-66575995 None:intergenic 35.0%
TGACACTTAAAAAAGAACGG+AGG + chr4_1:66576507-66576526 None:intergenic 35.0%
GACACTTAAAAAAAGAACGG+AGG - chr4_1:66576751-66576770 Msa0565710:intron 35.0%
ATAGAAAAGACTGGTACTAC+TGG - chr4_1:66576922-66576941 Msa0565710:intron 35.0%
TTATATATCAGCTCAGCTCT+TGG - chr4_1:66577043-66577062 Msa0565710:intron 35.0%
TATATATCAGCTCAGCTCTT+GGG - chr4_1:66577044-66577063 Msa0565710:intron 35.0%
CTCCAGAAATGGTAAACATA+AGG + chr4_1:66577193-66577212 None:intergenic 35.0%
! TGTTTTGTAGATTGGTGAGT+TGG - chr4_1:66577315-66577334 Msa0565710:intron 35.0%
TTGCTTAATGTGATGATTGC+AGG - chr4_1:66577364-66577383 Msa0565710:intron 35.0%
TGCTTAATGTGATGATTGCA+GGG - chr4_1:66577365-66577384 Msa0565710:intron 35.0%
ATTTAACTAGGTTCGGGATA+GGG + chr4_1:66577401-66577420 None:intergenic 35.0%
!!! CACTTTTTTATTTGACAGGC+CGG - chr4_1:66577526-66577545 Msa0565710:intron 35.0%
TACTCATTGTGTACAAAAGC+TGG + chr4_1:66577590-66577609 None:intergenic 35.0%
TTTGTACACAATGAGTACAG+AGG - chr4_1:66577593-66577612 Msa0565710:intron 35.0%
ACAATGAGTACAGAGGAATA+TGG - chr4_1:66577600-66577619 Msa0565710:intron 35.0%
!!! ATATTTGCTGTCACCGATTT+TGG - chr4_1:66577625-66577644 Msa0565710:intron 35.0%
!!! TATTTGCTGTCACCGATTTT+GGG - chr4_1:66577626-66577645 Msa0565710:intron 35.0%
TCTGCATACATGATACTAGA+TGG + chr4_1:66577791-66577810 None:intergenic 35.0%
GTTTGTGTGTAGTAGTACTA+AGG - chr4_1:66577876-66577895 Msa0565710:intron 35.0%
!!! TGATCCTGTGCAGTTTTAAA+AGG - chr4_1:66577911-66577930 Msa0565710:intron 35.0%
CTGCATACACTTCCTAATTA+AGG - chr4_1:66577944-66577963 Msa0565710:intron 35.0%
GCCATAAGTGATAGAGAACA+AGG + chr4_1:66574150-66574169 None:intergenic 40.0%
AGCAAGAATTGAAACCCATG+AGG - chr4_1:66574182-66574201 Msa0565710:three_prime_UTR 40.0%
GATTCCTCACAAACATGTGA+AGG - chr4_1:66574225-66574244 Msa0565710:three_prime_UTR 40.0%
CAAGAAAGGGACAGAGATAA+AGG + chr4_1:66574259-66574278 None:intergenic 40.0%
! GAGACACCTTTTGCAAGAAA+GGG + chr4_1:66574272-66574291 None:intergenic 40.0%
ACAACGTTGTAACACTTCCT+GGG - chr4_1:66574476-66574495 Msa0565710:three_prime_UTR 40.0%
TTCCTGGGATTGCAATTGTT+TGG - chr4_1:66574491-66574510 Msa0565710:exon 40.0%
TCCTGGGATTGCAATTGTTT+GGG - chr4_1:66574492-66574511 Msa0565710:exon 40.0%
TGTTTGGGGACTTACTTTGT+TGG - chr4_1:66574507-66574526 Msa0565710:exon 40.0%
TACTCACTTGGTCATATCTC+TGG - chr4_1:66574538-66574557 Msa0565710:CDS 40.0%
GCAAAAGCAATAGTAACAGC+AGG + chr4_1:66574577-66574596 None:intergenic 40.0%
!! CTATTGCTTTTGCTACCACA+AGG - chr4_1:66574584-66574603 Msa0565710:CDS 40.0%
TAACAATGGAAACCTCCTTG+TGG + chr4_1:66574602-66574621 None:intergenic 40.0%
AAGGAGGTTTCCATTGTTAC+AGG - chr4_1:66574603-66574622 Msa0565710:CDS 40.0%
!! GTAGTGTTGACCTGTAACAA+TGG + chr4_1:66574616-66574635 None:intergenic 40.0%
!! AATTTTCCCATGATGGGAGA+AGG - chr4_1:66575784-66575803 Msa0565710:intron 40.0%
ATTTGACCTTCTCCCATCAT+GGG + chr4_1:66575793-66575812 None:intergenic 40.0%
TATTTGACCTTCTCCCATCA+TGG + chr4_1:66575794-66575813 None:intergenic 40.0%
GAATGGCCTAGATATGAGAT+TGG - chr4_1:66575840-66575859 Msa0565710:intron 40.0%
AGGTACCCAATCTCATATCT+AGG + chr4_1:66575849-66575868 None:intergenic 40.0%
GAGGGAAAATACAAGGTGAT+TGG + chr4_1:66575878-66575897 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr4_1:66575974-66575993 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr4_1:66575975-66575994 None:intergenic 40.0%
AACTCAACTTCTCCCATCAT+GGG - chr4_1:66576957-66576976 Msa0565710:intron 40.0%
! GAATTATACAAAGGAGGTGC+AGG + chr4_1:66577009-66577028 None:intergenic 40.0%
AGCTGAGCTGATATATAAGC+TGG + chr4_1:66577041-66577060 None:intergenic 40.0%
!! ATGGAAGTGTTCCTGAAAAG+TGG + chr4_1:66577121-66577140 None:intergenic 40.0%
!! TTTTCAGGAACACTTCCATC+TGG - chr4_1:66577122-66577141 Msa0565710:intron 40.0%
TTTCAGGAACACTTCCATCT+GGG - chr4_1:66577123-66577142 Msa0565710:intron 40.0%
TGAGTTTACCGCTCTAGTAT+CGG + chr4_1:66577222-66577241 None:intergenic 40.0%
TGTAGACCCAATTGCAATTC+CGG + chr4_1:66577341-66577360 None:intergenic 40.0%
CATTTAACTAGGTTCGGGAT+AGG + chr4_1:66577402-66577421 None:intergenic 40.0%
TTCATTGATGCTCCTGTTAC+CGG + chr4_1:66577548-66577567 None:intergenic 40.0%
!!! ATTTGCTGTCACCGATTTTG+GGG - chr4_1:66577627-66577646 Msa0565710:intron 40.0%
!!! AGCTCCTTTTAAAACTGCAC+AGG + chr4_1:66577918-66577937 None:intergenic 40.0%
GCCATAAGTGATAGAGAACA+AGG + chr4_1:66574150-66574169 None:intergenic 40.0%
AGCAAGAATTGAAACCCATG+AGG - chr4_1:66574182-66574201 Msa0565710:three_prime_UTR 40.0%
GATTCCTCACAAACATGTGA+AGG - chr4_1:66574225-66574244 Msa0565710:three_prime_UTR 40.0%
CAAGAAAGGGACAGAGATAA+AGG + chr4_1:66574259-66574278 None:intergenic 40.0%
! GAGACACCTTTTGCAAGAAA+GGG + chr4_1:66574272-66574291 None:intergenic 40.0%
ACAACGTTGTAACACTTCCT+GGG - chr4_1:66574476-66574495 Msa0565710:three_prime_UTR 40.0%
TTCCTGGGATTGCAATTGTT+TGG - chr4_1:66574491-66574510 Msa0565710:exon 40.0%
TCCTGGGATTGCAATTGTTT+GGG - chr4_1:66574492-66574511 Msa0565710:exon 40.0%
TGTTTGGGGACTTACTTTGT+TGG - chr4_1:66574507-66574526 Msa0565710:exon 40.0%
TACTCACTTGGTCATATCTC+TGG - chr4_1:66574538-66574557 Msa0565710:CDS 40.0%
GCAAAAGCAATAGTAACAGC+AGG + chr4_1:66574577-66574596 None:intergenic 40.0%
!! CTATTGCTTTTGCTACCACA+AGG - chr4_1:66574584-66574603 Msa0565710:CDS 40.0%
TAACAATGGAAACCTCCTTG+TGG + chr4_1:66574602-66574621 None:intergenic 40.0%
AAGGAGGTTTCCATTGTTAC+AGG - chr4_1:66574603-66574622 Msa0565710:CDS 40.0%
!! GTAGTGTTGACCTGTAACAA+TGG + chr4_1:66574616-66574635 None:intergenic 40.0%
!! AATTTTCCCATGATGGGAGA+AGG - chr4_1:66575784-66575803 Msa0565710:intron 40.0%
ATTTGACCTTCTCCCATCAT+GGG + chr4_1:66575793-66575812 None:intergenic 40.0%
TATTTGACCTTCTCCCATCA+TGG + chr4_1:66575794-66575813 None:intergenic 40.0%
GAATGGCCTAGATATGAGAT+TGG - chr4_1:66575840-66575859 Msa0565710:intron 40.0%
AGGTACCCAATCTCATATCT+AGG + chr4_1:66575849-66575868 None:intergenic 40.0%
GAGGGAAAATACAAGGTGAT+TGG + chr4_1:66575878-66575897 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr4_1:66575974-66575993 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr4_1:66575975-66575994 None:intergenic 40.0%
AACTCAACTTCTCCCATCAT+GGG - chr4_1:66576957-66576976 Msa0565710:intron 40.0%
! GAATTATACAAAGGAGGTGC+AGG + chr4_1:66577009-66577028 None:intergenic 40.0%
AGCTGAGCTGATATATAAGC+TGG + chr4_1:66577041-66577060 None:intergenic 40.0%
!! ATGGAAGTGTTCCTGAAAAG+TGG + chr4_1:66577121-66577140 None:intergenic 40.0%
!! TTTTCAGGAACACTTCCATC+TGG - chr4_1:66577122-66577141 Msa0565710:intron 40.0%
TTTCAGGAACACTTCCATCT+GGG - chr4_1:66577123-66577142 Msa0565710:intron 40.0%
TGAGTTTACCGCTCTAGTAT+CGG + chr4_1:66577222-66577241 None:intergenic 40.0%
TGTAGACCCAATTGCAATTC+CGG + chr4_1:66577341-66577360 None:intergenic 40.0%
CATTTAACTAGGTTCGGGAT+AGG + chr4_1:66577402-66577421 None:intergenic 40.0%
TTCATTGATGCTCCTGTTAC+CGG + chr4_1:66577548-66577567 None:intergenic 40.0%
!!! ATTTGCTGTCACCGATTTTG+GGG - chr4_1:66577627-66577646 Msa0565710:intron 40.0%
!!! AGCTCCTTTTAAAACTGCAC+AGG + chr4_1:66577918-66577937 None:intergenic 40.0%
AGAGCCTTCACATGTTTGTG+AGG + chr4_1:66574232-66574251 None:intergenic 45.0%
TCACAAACATGTGAAGGCTC+TGG - chr4_1:66574231-66574250 Msa0565710:three_prime_UTR 45.0%
CTCTGTCCCTTTCTTGCAAA+AGG - chr4_1:66574263-66574282 Msa0565710:three_prime_UTR 45.0%
! GGAGACACCTTTTGCAAGAA+AGG + chr4_1:66574273-66574292 None:intergenic 45.0%
GACAACGTTGTAACACTTCC+TGG - chr4_1:66574475-66574494 Msa0565710:three_prime_UTR 45.0%
CCTGGGATTGCAATTGTTTG+GGG - chr4_1:66574493-66574512 Msa0565710:exon 45.0%
!! TTGCTTTTGCTACCACAAGG+AGG - chr4_1:66574587-66574606 Msa0565710:CDS 45.0%
! TGGTGGCATTTATGATGGGA+AGG - chr4_1:66575755-66575774 Msa0565710:intron 45.0%
GGAGGGAAGGATAAAATGGA+GGG + chr4_1:66575896-66575915 None:intergenic 45.0%
TGGAGGGAAGGATAAAATGG+AGG + chr4_1:66575897-66575916 None:intergenic 45.0%
TACGTCTTAGCTCAGTTGGT+TGG + chr4_1:66576004-66576023 None:intergenic 45.0%
CATCTACGTCTTAGCTCAGT+TGG + chr4_1:66576008-66576027 None:intergenic 45.0%
TTGGCAGTGTTACCCTTGAA+TGG - chr4_1:66576402-66576421 Msa0565710:intron 45.0%
AGTGTTACCCTTGAATGGTG+TGG - chr4_1:66576407-66576426 Msa0565710:intron 45.0%
CACAGTACCACACCATTCAA+GGG + chr4_1:66576417-66576436 None:intergenic 45.0%
!! ATGGGAGAAGTTGAGTTGAC+TGG + chr4_1:66576954-66576973 None:intergenic 45.0%
CAACTCAACTTCTCCCATCA+TGG - chr4_1:66576956-66576975 Msa0565710:intron 45.0%
! AAGGAGGTGCAGGTTATGAT+GGG + chr4_1:66576999-66577018 None:intergenic 45.0%
! AAAGGAGGTGCAGGTTATGA+TGG + chr4_1:66577000-66577019 None:intergenic 45.0%
! TTGTAGATTGGTGAGTTGGC+CGG - chr4_1:66577319-66577338 Msa0565710:intron 45.0%
AGTTGGCCGGAATTGCAATT+GGG - chr4_1:66577332-66577351 Msa0565710:intron 45.0%
TTATTTGACAGGCCGGTAAC+AGG - chr4_1:66577533-66577552 Msa0565710:intron 45.0%
!! AACAGGAGCATCAATGAACC+CGG - chr4_1:66577550-66577569 Msa0565710:intron 45.0%
ATGAACCCGGTTAGAACTCT+AGG - chr4_1:66577563-66577582 Msa0565710:intron 45.0%
!!! TTTGCTGTCACCGATTTTGG+GGG - chr4_1:66577628-66577647 Msa0565710:intron 45.0%
CATGGGTCTACAACACTGTT+AGG - chr4_1:66577663-66577682 Msa0565710:CDS 45.0%
TTTGAGGAAGGATGCACTCT+GGG + chr4_1:66577717-66577736 None:intergenic 45.0%
GTGCAGAAGACCTTGATTCA+AGG - chr4_1:66578107-66578126 Msa0565710:exon 45.0%
AGAGCCTTCACATGTTTGTG+AGG + chr4_1:66574232-66574251 None:intergenic 45.0%
TCACAAACATGTGAAGGCTC+TGG - chr4_1:66574231-66574250 Msa0565710:three_prime_UTR 45.0%
CTCTGTCCCTTTCTTGCAAA+AGG - chr4_1:66574263-66574282 Msa0565710:three_prime_UTR 45.0%
! GGAGACACCTTTTGCAAGAA+AGG + chr4_1:66574273-66574292 None:intergenic 45.0%
GACAACGTTGTAACACTTCC+TGG - chr4_1:66574475-66574494 Msa0565710:three_prime_UTR 45.0%
CCTGGGATTGCAATTGTTTG+GGG - chr4_1:66574493-66574512 Msa0565710:exon 45.0%
!! TTGCTTTTGCTACCACAAGG+AGG - chr4_1:66574587-66574606 Msa0565710:CDS 45.0%
! TGGTGGCATTTATGATGGGA+AGG - chr4_1:66575755-66575774 Msa0565710:intron 45.0%
GGAGGGAAGGATAAAATGGA+GGG + chr4_1:66575896-66575915 None:intergenic 45.0%
TGGAGGGAAGGATAAAATGG+AGG + chr4_1:66575897-66575916 None:intergenic 45.0%
TACGTCTTAGCTCAGTTGGT+TGG + chr4_1:66576004-66576023 None:intergenic 45.0%
CATCTACGTCTTAGCTCAGT+TGG + chr4_1:66576008-66576027 None:intergenic 45.0%
TTGGCAGTGTTACCCTTGAA+TGG - chr4_1:66576402-66576421 Msa0565710:intron 45.0%
AGTGTTACCCTTGAATGGTG+TGG - chr4_1:66576407-66576426 Msa0565710:intron 45.0%
CACAGTACCACACCATTCAA+GGG + chr4_1:66576417-66576436 None:intergenic 45.0%
!! ATGGGAGAAGTTGAGTTGAC+TGG + chr4_1:66576954-66576973 None:intergenic 45.0%
CAACTCAACTTCTCCCATCA+TGG - chr4_1:66576956-66576975 Msa0565710:intron 45.0%
! AAGGAGGTGCAGGTTATGAT+GGG + chr4_1:66576999-66577018 None:intergenic 45.0%
! AAAGGAGGTGCAGGTTATGA+TGG + chr4_1:66577000-66577019 None:intergenic 45.0%
! TTGTAGATTGGTGAGTTGGC+CGG - chr4_1:66577319-66577338 Msa0565710:intron 45.0%
AGTTGGCCGGAATTGCAATT+GGG - chr4_1:66577332-66577351 Msa0565710:intron 45.0%
TTATTTGACAGGCCGGTAAC+AGG - chr4_1:66577533-66577552 Msa0565710:intron 45.0%
!! AACAGGAGCATCAATGAACC+CGG - chr4_1:66577550-66577569 Msa0565710:intron 45.0%
ATGAACCCGGTTAGAACTCT+AGG - chr4_1:66577563-66577582 Msa0565710:intron 45.0%
!!! TTTGCTGTCACCGATTTTGG+GGG - chr4_1:66577628-66577647 Msa0565710:intron 45.0%
CATGGGTCTACAACACTGTT+AGG - chr4_1:66577663-66577682 Msa0565710:CDS 45.0%
TTTGAGGAAGGATGCACTCT+GGG + chr4_1:66577717-66577736 None:intergenic 45.0%
GTGCAGAAGACCTTGATTCA+AGG - chr4_1:66578107-66578126 Msa0565710:exon 45.0%
!!! ATATTTTATTAATATATCAA+TGG + chr4_1:66575819-66575838 None:intergenic 5.0%
!! TATATTAATAAAATATTGAA+TGG - chr4_1:66575823-66575842 Msa0565710:intron 5.0%
!!! ATATTTTATTAATATATCAA+TGG + chr4_1:66575819-66575838 None:intergenic 5.0%
!! TATATTAATAAAATATTGAA+TGG - chr4_1:66575823-66575842 Msa0565710:intron 5.0%
CCCCAAACAATTGCAATCCC+AGG + chr4_1:66574496-66574515 None:intergenic 50.0%
CCACAGTACCACACCATTCA+AGG + chr4_1:66576418-66576437 None:intergenic 50.0%
CCTTGAATGGTGTGGTACTG+TGG - chr4_1:66576415-66576434 Msa0565710:intron 50.0%
! TTGGGAGCAACACTTGCTAG+TGG - chr4_1:66577062-66577081 Msa0565710:intron 50.0%
!! GGCACACATGACCACTTTTC+AGG - chr4_1:66577107-66577126 Msa0565710:intron 50.0%
GCTTGAAGGTTAGACCCAGA+TGG + chr4_1:66577140-66577159 None:intergenic 50.0%
ATCGGTGGCAACTCCAGAAA+TGG + chr4_1:66577204-66577223 None:intergenic 50.0%
AGTTGCCACCGATACTAGAG+CGG - chr4_1:66577211-66577230 Msa0565710:intron 50.0%
! GTTTACCGCTCTAGTATCGG+TGG + chr4_1:66577219-66577238 None:intergenic 50.0%
GAGTTGGCCGGAATTGCAAT+TGG - chr4_1:66577331-66577350 Msa0565710:intron 50.0%
! CTGGTCCTAGAGTTCTAACC+GGG + chr4_1:66577571-66577590 None:intergenic 50.0%
! GCTGGTCCTAGAGTTCTAAC+CGG + chr4_1:66577572-66577591 None:intergenic 50.0%
AGTGTTGTAGACCCATGCTC+CGG + chr4_1:66577660-66577679 None:intergenic 50.0%
! CTTTGAGGAAGGATGCACTC+TGG + chr4_1:66577718-66577737 None:intergenic 50.0%
GCATCCTTCCTCAAAGAAGC+TGG - chr4_1:66577722-66577741 Msa0565710:CDS 50.0%
! ACGTCCAGCTTCTTTGAGGA+AGG + chr4_1:66577729-66577748 None:intergenic 50.0%
TTCCTCAAAGAAGCTGGACG+TGG - chr4_1:66577728-66577747 Msa0565710:CDS 50.0%
TCAAAGAAGCTGGACGTGGT+GGG - chr4_1:66577732-66577751 Msa0565710:CDS 50.0%
CCCCAAACAATTGCAATCCC+AGG + chr4_1:66574496-66574515 None:intergenic 50.0%
CCACAGTACCACACCATTCA+AGG + chr4_1:66576418-66576437 None:intergenic 50.0%
CCTTGAATGGTGTGGTACTG+TGG - chr4_1:66576415-66576434 Msa0565710:intron 50.0%
! TTGGGAGCAACACTTGCTAG+TGG - chr4_1:66577062-66577081 Msa0565710:intron 50.0%
!! GGCACACATGACCACTTTTC+AGG - chr4_1:66577107-66577126 Msa0565710:intron 50.0%
GCTTGAAGGTTAGACCCAGA+TGG + chr4_1:66577140-66577159 None:intergenic 50.0%
ATCGGTGGCAACTCCAGAAA+TGG + chr4_1:66577204-66577223 None:intergenic 50.0%
AGTTGCCACCGATACTAGAG+CGG - chr4_1:66577211-66577230 Msa0565710:intron 50.0%
! GTTTACCGCTCTAGTATCGG+TGG + chr4_1:66577219-66577238 None:intergenic 50.0%
GAGTTGGCCGGAATTGCAAT+TGG - chr4_1:66577331-66577350 Msa0565710:intron 50.0%
! CTGGTCCTAGAGTTCTAACC+GGG + chr4_1:66577571-66577590 None:intergenic 50.0%
! GCTGGTCCTAGAGTTCTAAC+CGG + chr4_1:66577572-66577591 None:intergenic 50.0%
AGTGTTGTAGACCCATGCTC+CGG + chr4_1:66577660-66577679 None:intergenic 50.0%
! CTTTGAGGAAGGATGCACTC+TGG + chr4_1:66577718-66577737 None:intergenic 50.0%
GCATCCTTCCTCAAAGAAGC+TGG - chr4_1:66577722-66577741 Msa0565710:CDS 50.0%
! ACGTCCAGCTTCTTTGAGGA+AGG + chr4_1:66577729-66577748 None:intergenic 50.0%
TTCCTCAAAGAAGCTGGACG+TGG - chr4_1:66577728-66577747 Msa0565710:CDS 50.0%
TCAAAGAAGCTGGACGTGGT+GGG - chr4_1:66577732-66577751 Msa0565710:CDS 50.0%
AGTGGTCGGGATTTGAACCC+CGG - chr4_1:66575954-66575973 Msa0565710:intron 55.0%
CTCTGGGTGATCTCACGCAA+TGG + chr4_1:66577701-66577720 None:intergenic 55.0%
CACCACGTCCAGCTTCTTTG+AGG + chr4_1:66577733-66577752 None:intergenic 55.0%
CTCAAAGAAGCTGGACGTGG+TGG - chr4_1:66577731-66577750 Msa0565710:CDS 55.0%
AGTGGTCGGGATTTGAACCC+CGG - chr4_1:66575954-66575973 Msa0565710:intron 55.0%
CTCTGGGTGATCTCACGCAA+TGG + chr4_1:66577701-66577720 None:intergenic 55.0%
CACCACGTCCAGCTTCTTTG+AGG + chr4_1:66577733-66577752 None:intergenic 55.0%
CTCAAAGAAGCTGGACGTGG+TGG - chr4_1:66577731-66577750 Msa0565710:CDS 55.0%
CCGGCGATGGCCCCCAAAAT+CGG + chr4_1:66577641-66577660 None:intergenic 65.0%
!! CCGATTTTGGGGGCCATCGC+CGG - chr4_1:66577638-66577657 Msa0565710:intron 65.0%
GTAGACCCATGCTCCGGCGA+TGG + chr4_1:66577654-66577673 None:intergenic 65.0%
CCGGCGATGGCCCCCAAAAT+CGG + chr4_1:66577641-66577660 None:intergenic 65.0%
!! CCGATTTTGGGGGCCATCGC+CGG - chr4_1:66577638-66577657 Msa0565710:intron 65.0%
GTAGACCCATGCTCCGGCGA+TGG + chr4_1:66577654-66577673 None:intergenic 65.0%
TGGGGGCCATCGCCGGAGCA+TGG - chr4_1:66577645-66577664 Msa0565710:intron 75.0%
GGGGGCCATCGCCGGAGCAT+GGG - chr4_1:66577646-66577665 Msa0565710:intron 75.0%
TGGGGGCCATCGCCGGAGCA+TGG - chr4_1:66577645-66577664 Msa0565710:intron 75.0%
GGGGGCCATCGCCGGAGCAT+GGG - chr4_1:66577646-66577665 Msa0565710:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 66574081 66578197 66574081 ID=Msa0565710;Name=Msa0565710
chr4_1 mRNA 66574081 66578197 66574081 ID=Msa0565710-mRNA-1;Parent=Msa0565710;Name=Msa0565710-mRNA-1;_AED=0.26;_eAED=0.26;_QI=84|1|1|1|1|1|5|428|276
chr4_1 exon 66574081 66574734 66574081 ID=Msa0565710-mRNA-1:exon:21669;Parent=Msa0565710-mRNA-1
chr4_1 exon 66574892 66574953 66574892 ID=Msa0565710-mRNA-1:exon:21668;Parent=Msa0565710-mRNA-1
chr4_1 exon 66575046 66575243 66575046 ID=Msa0565710-mRNA-1:exon:21667;Parent=Msa0565710-mRNA-1
chr4_1 exon 66577654 66577878 66577654 ID=Msa0565710-mRNA-1:exon:21666;Parent=Msa0565710-mRNA-1
chr4_1 exon 66577994 66578197 66577994 ID=Msa0565710-mRNA-1:exon:21665;Parent=Msa0565710-mRNA-1
chr4_1 five_prime_UTR 66578114 66578197 66578114 ID=Msa0565710-mRNA-1:five_prime_utr;Parent=Msa0565710-mRNA-1
chr4_1 CDS 66577994 66578113 66577994 ID=Msa0565710-mRNA-1:cds;Parent=Msa0565710-mRNA-1
chr4_1 CDS 66577654 66577878 66577654 ID=Msa0565710-mRNA-1:cds;Parent=Msa0565710-mRNA-1
chr4_1 CDS 66575046 66575243 66575046 ID=Msa0565710-mRNA-1:cds;Parent=Msa0565710-mRNA-1
chr4_1 CDS 66574892 66574953 66574892 ID=Msa0565710-mRNA-1:cds;Parent=Msa0565710-mRNA-1
chr4_1 CDS 66574509 66574734 66574509 ID=Msa0565710-mRNA-1:cds;Parent=Msa0565710-mRNA-1
chr4_1 three_prime_UTR 66574081 66574508 66574081 ID=Msa0565710-mRNA-1:three_prime_utr;Parent=Msa0565710-mRNA-1
Gene Sequence

>Msa0565710

ATGGCAAATGATAATTCAGCAAGAATTGAAACCCATGAGGTTGTTTTAGATACAAACAAGGATTCCTCACAAACATGTGAAGGCTCTGGCTCCTTTATCTCTGTCCCTTTCTTGCAAAAGTTAATAGCAGAAATGGTGGGCACATATTTCTTGATATTTGCAGGATGTGCTTCAATAGTAGTGAACAAGGACAACGACAACGTTGTAACACTTCCTGGGATTGCAATTGTTTGGGGACTTACTTTGTTGGTATTGATTTACTCACTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACCACAAGGAGGTTTCCATTGTTACAGGTACCAGCTTATATATCAGCTCAGCTCTTGGGAGCAACACTTGCTAGTGGAACTCTAAAACTAATATTCAGTGGCACACATGACCACTTTTCAGGAACACTTCCATCTGGGTCTAACCTTCAAGCTTTTGTTCTTGAATTCATAACCACATTTTACCTTATGTTTACCATTTCTGGAGTTGCCACCGATACTAGAGCGATTGGTGAGTTGGCCGGAATTGCAATTGGGTCTACATTGTTGCTTAATGTGATGATTGCAGGGCCGGTAACAGGAGCATCAATGAACCCGGTTAGAACTCTAGGACCAGCTTTTGTACACAATGAGTACAGAGGAATATGGATATATTTGCTGTCACCGATTTTGGGGGCCATCGCCGGAGCATGGGTCTACAACACTGTTAGGTACACTAACAAGCCATTGCGTGAGATCACCCAGAGTGCATCCTTCCTCAAAGAAGCTGGACGTGGTGGGAACCAAATAGTTTAA
Protein sequence

>Msa0565710

MANDNSARIETHEVVLDTNKDSSQTCEGSGSFISVPFLQKLIAEMVGTYFLIFAGCASIVVNKDNDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGATLASGTLKLIFSGTHDHFSGTLPSGSNLQAFVLEFITTFYLMFTISGVATDTRAIGELAGIAIGSTLLLNVMIAGPVTGASMNPVRTLGPAFVHNEYRGIWIYLLSPILGAIAGAWVYNTVRYTNKPLREITQSASFLKEAGRGGNQIV*