AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701650 MtrunA17_Chr8g0379901 98.188 276 5 0 1 276 1 276 0.0 550
Msa0701650 MtrunA17_Chr8g0379911 73.585 265 70 0 4 268 3 267 6.03e-151 422
Msa0701650 MtrunA17_Chr2g0284581 71.218 271 78 0 4 274 3 273 2.85e-144 405
Msa0701650 MtrunA17_Chr2g0284591 68.340 259 82 0 13 271 10 268 3.62e-135 382
Msa0701650 MtrunA17_Chr2g0284631 64.706 272 89 2 4 268 55 326 1.69e-130 373
Msa0701650 MtrunA17_Chr2g0284611 65.789 266 91 0 4 269 3 268 1.47e-128 365
Msa0701650 MtrunA17_Chr2g0284601 74.545 220 56 0 55 274 6 225 1.14e-122 349
Msa0701650 MtrunA17_Chr4g0044201 51.292 271 113 3 9 273 1 258 4.43e-97 285
Msa0701650 MtrunA17_Chr5g0435051 50.775 258 119 4 1 254 1 254 2.10e-85 256
Msa0701650 MtrunA17_Chr3g0079421 53.556 239 108 2 19 257 8 243 2.59e-83 251
Msa0701650 MtrunA17_Chr4g0001221 53.680 231 102 2 35 263 71 298 5.17e-78 238
Msa0701650 MtrunA17_Chr2g0333771 52.863 227 102 2 39 263 80 303 3.50e-76 234
Msa0701650 MtrunA17_Chr7g0217331 48.148 216 111 1 37 252 35 249 9.77e-73 224
Msa0701650 MtrunA17_Chr1g0201331 49.362 235 108 3 34 260 69 300 1.94e-69 216
Msa0701650 MtrunA17_Chr5g0426131 46.442 267 117 8 4 261 10 259 1.06e-66 208
Msa0701650 MtrunA17_Chr1g0184541 40.271 221 131 1 33 253 56 275 4.06e-49 164
Msa0701650 MtrunA17_Chr4g0001111 52.000 150 67 2 35 182 71 217 5.40e-40 139
Msa0701650 MtrunA17_Chr4g0001161 49.645 141 66 2 52 190 1 138 3.11e-33 118
Msa0701650 MtrunA17_Chr4g0001121 56.098 82 36 0 182 263 10 91 1.96e-28 104
Msa0701650 MtrunA17_Chr8g0340161 33.028 218 139 3 38 248 18 235 1.14e-26 104
Msa0701650 MtrunA17_Chr2g0331261 32.645 242 145 7 34 264 15 249 2.33e-25 100
Msa0701650 MtrunA17_Chr5g0399341 33.047 233 139 5 38 257 18 246 8.11e-25 99.4
Msa0701650 MtrunA17_Chr4g0001151 45.865 133 52 3 52 182 1 115 1.22e-23 97.8
Msa0701650 MtrunA17_Chr1g0146161 31.120 241 145 8 13 246 3 229 1.85e-23 95.9
Msa0701650 MtrunA17_Chr1g0188771 32.444 225 143 5 38 254 20 243 2.33e-23 95.9
Msa0701650 MtrunA17_Chr6g0478191 32.159 227 141 5 38 254 20 243 6.24e-23 94.7
Msa0701650 MtrunA17_Chr1g0146171 31.102 254 148 11 13 255 3 240 1.01e-22 94.0
Msa0701650 MtrunA17_Chr3g0145671 31.222 221 137 5 37 242 35 255 1.19e-22 94.4
Msa0701650 MtrunA17_Chr7g0264961 33.180 217 135 6 38 246 20 234 3.38e-21 89.7
Msa0701650 MtrunA17_Chr1g0212671 32.759 232 142 7 38 257 20 249 5.73e-21 89.4
Msa0701650 MtrunA17_Chr2g0326621 30.837 227 133 6 39 242 40 265 1.14e-20 89.4
Msa0701650 MtrunA17_Chr7g0264111 30.357 224 133 6 37 238 37 259 3.42e-20 87.8
Msa0701650 MtrunA17_Chr4g0030861 32.287 223 142 5 44 258 26 247 4.06e-20 87.0
Msa0701650 MtrunA17_Chr4g0006001 28.409 264 164 8 1 248 26 280 8.20e-20 87.0
Msa0701650 MtrunA17_Chr1g0199731 28.390 236 142 5 37 248 37 269 9.46e-20 86.7
Msa0701650 MtrunA17_Chr8g0386961 28.369 282 173 9 2 259 11 287 1.56e-19 85.9
Msa0701650 MtrunA17_Chr4g0029071 30.568 229 134 7 37 242 37 263 7.81e-19 84.0
Msa0701650 MtrunA17_Chr5g0397391 29.289 239 145 7 30 248 43 277 8.97e-19 84.0
Msa0701650 MtrunA17_Chr5g0436701 29.707 239 145 7 37 256 53 287 9.88e-19 84.0
Msa0701650 MtrunA17_Chr3g0113211 26.236 263 177 6 10 256 26 287 1.84e-18 83.2
Msa0701650 MtrunA17_Chr4g0020781 31.492 181 121 2 75 253 20 199 1.94e-16 76.3
Msa0701650 MtrunA17_Chr7g0222791 27.706 231 160 3 38 261 20 250 1.82e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701650 AT4G18910.1 71.486 249 64 1 33 274 46 294 3.17e-131 374
Msa0701650 AT4G19030.1 68.045 266 78 1 8 266 24 289 1.59e-128 367
Msa0701650 AT5G37820.1 60.000 235 94 0 39 273 43 277 2.40e-101 297
Msa0701650 AT5G37820.2 60.000 235 94 0 39 273 79 313 6.33e-101 298
Msa0701650 AT5G37810.1 53.333 270 119 2 3 266 2 270 6.26e-100 294
Msa0701650 AT1G31885.1 52.399 271 118 2 1 260 1 271 2.57e-98 291
Msa0701650 AT2G34390.1 53.101 258 113 2 17 267 26 282 7.44e-91 271
Msa0701650 AT4G18910.2 73.446 177 40 1 33 202 46 222 1.17e-89 265
Msa0701650 AT4G19030.3 65.672 201 62 1 8 201 24 224 6.52e-88 261
Msa0701650 AT1G31885.2 55.760 217 89 1 51 260 1 217 2.19e-86 259
Msa0701650 AT2G34390.2 53.782 238 102 2 37 267 4 240 2.62e-85 255
Msa0701650 AT4G19030.2 63.187 182 60 1 8 182 24 205 5.28e-76 231
Msa0701650 AT1G80760.1 50.820 244 113 3 12 253 55 293 3.20e-73 226
Msa0701650 AT4G10380.1 48.819 254 119 3 15 260 54 304 1.07e-72 225
Msa0701650 AT2G34390.3 55.959 193 77 2 17 202 26 217 1.45e-68 212
Msa0701650 AT2G34390.4 55.429 175 70 2 17 184 26 199 6.81e-62 195
Msa0701650 AT3G06100.1 38.057 247 150 3 10 254 16 261 7.80e-48 160
Msa0701650 AT3G06100.2 40.654 214 125 2 42 254 1 213 3.97e-47 157
Msa0701650 AT1G31885.3 48.936 141 65 2 1 134 1 141 1.60e-37 130
Msa0701650 AT3G16240.1 33.476 233 137 6 30 248 7 235 2.69e-29 112
Msa0701650 AT2G29870.1 52.688 93 44 0 154 246 20 112 7.43e-28 104
Msa0701650 AT5G47450.1 32.636 239 151 4 30 258 10 248 1.83e-27 107
Msa0701650 AT3G06100.3 38.298 141 85 2 115 254 41 180 3.04e-25 99.8
Msa0701650 AT4G17340.1 30.252 238 156 4 30 257 10 247 1.43e-24 99.4
Msa0701650 AT4G35100.1 31.579 228 141 5 30 242 29 256 2.39e-23 96.7
Msa0701650 AT4G35100.2 31.579 228 141 5 30 242 29 256 2.39e-23 96.7
Msa0701650 AT3G26520.1 33.486 218 138 3 38 248 21 238 7.48e-23 94.7
Msa0701650 AT1G17810.1 34.286 175 111 2 91 261 86 260 5.04e-22 92.8
Msa0701650 AT2G16850.1 30.769 221 138 5 37 242 34 254 5.12e-22 93.2
Msa0701650 AT2G36830.1 34.434 212 131 4 38 241 20 231 9.71e-22 91.7
Msa0701650 AT5G60660.1 29.362 235 143 6 36 248 36 269 6.44e-21 90.1
Msa0701650 AT2G39010.1 29.060 234 143 6 37 248 36 268 1.01e-20 89.7
Msa0701650 AT2G25810.1 32.420 219 135 7 38 248 18 231 2.86e-20 87.8
Msa0701650 AT1G73190.1 35.542 166 103 3 92 254 87 251 2.90e-20 88.2
Msa0701650 AT4G23400.1 28.629 248 155 6 30 259 44 287 6.85e-20 87.4
Msa0701650 AT2G37170.1 28.879 232 142 6 39 248 37 267 1.06e-19 87.0
Msa0701650 AT2G37170.2 28.879 232 142 6 39 248 80 310 1.25e-19 87.4
Msa0701650 AT3G61430.2 29.150 247 151 7 30 257 43 284 1.51e-19 86.3
Msa0701650 AT3G61430.1 29.150 247 151 7 30 257 43 284 1.51e-19 86.3
Msa0701650 AT4G01470.1 35.465 172 107 3 80 248 67 237 2.82e-19 85.1
Msa0701650 AT1G01620.1 29.412 238 145 5 30 248 43 276 3.00e-19 85.5
Msa0701650 AT3G54820.1 28.326 233 146 5 37 248 36 268 3.70e-19 85.5
Msa0701650 AT3G53420.1 28.755 233 145 6 37 248 37 269 4.36e-19 85.1
Msa0701650 AT3G53420.2 28.755 233 145 6 37 248 37 269 4.36e-19 85.1
Msa0701650 AT4G00430.1 27.509 269 170 6 2 248 12 277 4.54e-19 85.1
Msa0701650 AT2G45960.1 28.745 247 152 7 30 257 43 284 7.55e-19 84.3
Msa0701650 AT3G47440.1 29.224 219 145 4 38 248 22 238 2.87e-18 82.4
Msa0701650 AT2G37180.1 28.448 232 143 6 39 248 37 267 1.22e-17 81.3
Msa0701650 AT1G01620.2 31.720 186 107 4 69 238 13 194 1.46e-16 77.0
Msa0701650 AT2G45960.2 30.476 210 126 5 30 223 43 248 2.09e-16 77.4
Msa0701650 AT2G45960.3 30.476 210 126 5 30 223 43 248 2.16e-16 77.8
Msa0701650 AT2G39010.2 29.936 157 96 4 37 180 36 191 9.19e-12 63.5

Find 90 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTTACCATTTC+TGG 0.053365 4_4:+73078997 Msa0701650:CDS
TACACTCTCTATATTTATTT+TGG 0.109717 4_4:-73079870 None:intergenic
ATATTTGTTGTCGCCGATTT+TGG 0.136028 4_4:+73079433 Msa0701650:CDS
TTCCAATTTCTTAAACTATT+TGG 0.141022 4_4:-73079565 None:intergenic
AACCAAATAGTTTAAGAAAT+TGG 0.160387 4_4:+73079563 Msa0701650:exon
TCCTGGGATTGCAATTGTTT+GGG 0.194809 4_4:+73077101 Msa0701650:CDS
TCCTTGTTCTCTATCACTTA+TGG 0.247542 4_4:+73076755 Msa0701650:exon
TTCATTGATGCTCCTGTTAC+CGG 0.292955 4_4:-73079353 None:intergenic
AAATTGGAGTCGTTTATTTC+AGG 0.294484 4_4:+73076679 None:intergenic
TTCCTGGGATTGCAATTGTT+TGG 0.304422 4_4:+73077100 Msa0701650:CDS
ATCAATTTAGCACCTTAATT+AGG 0.305497 4_4:-73079764 None:intergenic
CTGCATACACTTCCTAATTA+AGG 0.312351 4_4:+73079752 Msa0701650:three_prime_UTR
AAGGAGGTTTCCATTGTTAC+AGG 0.315994 4_4:+73077212 Msa0701650:CDS
ACATATTTCTTGATATTTGC+AGG 0.316106 4_4:+73077030 Msa0701650:CDS
CTCTGTCCCTTTCTTGCAAA+AGG 0.317695 4_4:+73076872 Msa0701650:CDS
TGTAGACCCAATTGCAATTC+CGG 0.343788 4_4:-73079147 None:intergenic
TAATTAAGGTGCTAAATTGA+TGG 0.365761 4_4:+73079766 Msa0701650:three_prime_UTR
CAAGAAAGGGACAGAGATAA+AGG 0.377304 4_4:-73076865 None:intergenic
GACAACGTGGTAACACTTCC+TGG 0.380447 4_4:+73077084 Msa0701650:CDS
TACTCACTTGGTCATATCTC+TGG 0.390477 4_4:+73077147 Msa0701650:CDS
CACCACGCCCAGCTTCTTTG+AGG 0.393307 4_4:-73079538 None:intergenic
TTATTTGACAGACCGGTAAC+AGG 0.396494 4_4:+73079341 Msa0701650:intron
TTGCTTAATGTGATGATTGC+AGG 0.400582 4_4:+73079173 Msa0701650:CDS
TCTGCATACATGATACTTGA+TGG 0.407893 4_4:-73079596 None:intergenic
AATACAGTTAATAGCAGAAA+TGG 0.417887 4_4:+73077002 Msa0701650:intron
CTGCACATTAAAAGTAACTT+AGG 0.427053 4_4:-73079899 None:intergenic
GCTGGTCCTAGAGTTCTAAC+CGG 0.437239 4_4:-73079377 None:intergenic
GAGTTGGCCGGAATTGCAAT+TGG 0.443767 4_4:+73079140 Msa0701650:CDS
TTATATATCAGCTCAGCTCT+TGG 0.447897 4_4:+73078852 Msa0701650:CDS
CATGGGTCTACAACACTGTT+AGG 0.451802 4_4:+73079471 Msa0701650:CDS
CTTTGAGGAAGGATGCACTC+TGG 0.452465 4_4:-73079523 None:intergenic
ATTCAAGAACAAAAGCTTGA+AGG 0.459020 4_4:-73078960 None:intergenic
AAGTGTATATATGATTATCA+AGG 0.459227 4_4:-73079995 None:intergenic
CTCCAGAAATGGTAAACATA+AGG 0.466289 4_4:-73078999 None:intergenic
GCATCCTTCCTCAAAGAAGC+TGG 0.467151 4_4:+73079530 Msa0701650:CDS
ATCGGTGGCAACTCCAGAAA+TGG 0.467754 4_4:-73079010 None:intergenic
CCTGGGATTGCAATTGTTTG+GGG 0.472067 4_4:+73077102 Msa0701650:CDS
TATATATCAGCTCAGCTCTT+GGG 0.473337 4_4:+73078853 Msa0701650:CDS
TTTGAGGAAGGATGCACTCT+GGG 0.475411 4_4:-73079522 None:intergenic
TGTTTGGGGACTAACTTTGT+TGG 0.484275 4_4:+73077116 Msa0701650:CDS
AGTTGGCCGGAATTGCAATT+GGG 0.485520 4_4:+73079141 Msa0701650:CDS
GTAGACCCATGCTCCGGCGA+TGG 0.495881 4_4:-73079459 None:intergenic
TTGTATCTAAAACAACCTCA+TGG 0.499097 4_4:-73076806 None:intergenic
CCCCAAACAATTGCAATCCC+AGG 0.504953 4_4:-73077102 None:intergenic
GAGTCGTTTATTTCAGGTTG+AGG 0.505598 4_4:+73076685 None:intergenic
TACTCATTGTGTACAAAAGC+TGG 0.505829 4_4:-73079395 None:intergenic
GTGCAGAAGACCTTGATTCA+AGG 0.506676 4_4:+73079916 Msa0701650:three_prime_UTR
ACAATGAGTACAGAGGAATA+TGG 0.514676 4_4:+73079408 Msa0701650:CDS
TTGTAGATTGGTGAGTTGGC+CGG 0.514724 4_4:+73079128 Msa0701650:intron
TCACAAACATGTGAAGGCTC+TGG 0.518719 4_4:+73076840 Msa0701650:CDS
ATGAACCCGGTTAGAACTCT+AGG 0.519479 4_4:+73079371 Msa0701650:CDS
CTCAAAGAAGCTGGGCGTGG+TGG 0.520816 4_4:+73079539 Msa0701650:CDS
AGTGTATATATGATTATCAA+GGG 0.526044 4_4:-73079994 None:intergenic
TTTCAGGAACACTTCCATCT+GGG 0.526344 4_4:+73078932 Msa0701650:CDS
TTCCTCAAAGAAGCTGGGCG+TGG 0.532484 4_4:+73079536 Msa0701650:CDS
TGTATCTAAAACAACCTCAT+GGG 0.536127 4_4:-73076805 None:intergenic
CTATATATGACCTTGAATCA+AGG 0.539301 4_4:-73079926 None:intergenic
AGCTGAGCTGATATATAAGC+TGG 0.541389 4_4:-73078847 None:intergenic
TCAAAGAAGCTGGGCGTGGT+GGG 0.548515 4_4:+73079540 Msa0701650:CDS
GCAAAAGCAATAGTAACAGC+AGG 0.549342 4_4:-73077183 None:intergenic
TTGGTATTGATTTACTCACT+TGG 0.550812 4_4:+73077135 Msa0701650:CDS
GTTTGTGTGTAGTAGTACTA+AGG 0.555212 4_4:+73079684 Msa0701650:three_prime_UTR
TGAGTTTACCGCTCTAGTAT+CGG 0.558198 4_4:-73079028 None:intergenic
CTCTGGGTGATCTCACGCAA+TGG 0.559604 4_4:-73079506 None:intergenic
ACGCCCAGCTTCTTTGAGGA+AGG 0.561104 4_4:-73079534 None:intergenic
CTGGTCCTAGAGTTCTAACC+GGG 0.561868 4_4:-73079376 None:intergenic
CATCCTTCCTCAAAGAAGCT+GGG 0.568992 4_4:+73079531 Msa0701650:CDS
GGTAAACATAAGGTAAAATG+TGG 0.569076 4_4:-73078989 None:intergenic
ATGGAAGTGTTCCTGAAAAG+TGG 0.569487 4_4:-73078927 None:intergenic
TGCTTAATGTGATGATTGCA+GGG 0.570893 4_4:+73079174 Msa0701650:CDS
TCGTTTATTTCAGGTTGAGG+AGG 0.578693 4_4:+73076688 None:intergenic
GCCATAAGTGATAGAGAACA+AGG 0.580173 4_4:-73076756 None:intergenic
ACAACGTGGTAACACTTCCT+GGG 0.584721 4_4:+73077085 Msa0701650:CDS
ACAGTTAATAGCAGAAATGG+TGG 0.598028 4_4:+73077005 Msa0701650:intron
AGTGTTGTAGACCCATGCTC+CGG 0.603956 4_4:-73079465 None:intergenic
GCTTGAAGGTTAGACCCAGA+TGG 0.605252 4_4:-73078946 None:intergenic
TTGGGAGCAACACTTGCTAG+TGG 0.608245 4_4:+73078871 Msa0701650:CDS
ACTCTTAAACTAATATTCAG+TGG 0.615140 4_4:+73078895 Msa0701650:CDS
GATTCCTCACAAACATGTGA+AGG 0.617028 4_4:+73076834 Msa0701650:CDS
GTAGTGTTGACCTGTAACAA+TGG 0.623661 4_4:-73077222 None:intergenic
TGCTTCAATAGTAGTGAACA+AGG 0.624250 4_4:+73077056 Msa0701650:CDS
AACAGGAGCATCAATGAACC+CGG 0.626218 4_4:+73079358 Msa0701650:CDS
AGAGCCTTCACATGTTTGTG+AGG 0.626868 4_4:-73076838 None:intergenic
CAGTTAATAGCAGAAATGGT+GGG 0.636357 4_4:+73077006 Msa0701650:intron
GTTTACCGCTCTAGTATCGG+TGG 0.679010 4_4:-73079025 None:intergenic
AGCAAGAATTGAAACCCATG+AGG 0.683901 4_4:+73076791 Msa0701650:CDS
TTTGTACACAATGAGTACAG+AGG 0.696529 4_4:+73079401 Msa0701650:CDS
TAACAATGGAAACCTCCTTG+TGG 0.700560 4_4:-73077208 None:intergenic
AGTTGCCACCGATACTAGAG+CGG 0.735236 4_4:+73079020 Msa0701650:CDS
GAACAAGGACAACGACAACG+TGG 0.744853 4_4:+73077071 Msa0701650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATATATATAAAAT+TGG + chr4_4:73078499-73078518 Msa0701650:intron 0.0%
!! TATAGTATATTGAATTAATT+AGG + chr4_4:73076963-73076982 Msa0701650:intron 10.0%
!! ATATACAAAAATAAACTTTA+TGG - chr4_4:73077264-73077283 None:intergenic 10.0%
!!! AAAAAGATTATTTTTTTTAC+AGG - chr4_4:73077535-73077554 None:intergenic 10.0%
!!! TTTTTTTTACCAAAAAAAAA+GGG + chr4_4:73077550-73077569 Msa0701650:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG - chr4_4:73077737-73077756 None:intergenic 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG - chr4_4:73077769-73077788 None:intergenic 10.0%
!! CAAAAATTAAATTAAAAATG+AGG + chr4_4:73077936-73077955 Msa0701650:intron 10.0%
!!! TTTTTTTGACAAAAAAATTA+TGG + chr4_4:73078557-73078576 Msa0701650:intron 10.0%
!!! TTAATTTTGCATTTTTTTTA+TGG - chr4_4:73079252-73079271 None:intergenic 10.0%
!! TTTACAAATTGAGTTAAAAA+GGG - chr4_4:73077496-73077515 None:intergenic 15.0%
!!! TTTTACAAATTGAGTTAAAA+AGG - chr4_4:73077497-73077516 None:intergenic 15.0%
!!! CTTTTTTTTACCAAAAAAAA+AGG + chr4_4:73077549-73077568 Msa0701650:intron 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG - chr4_4:73077653-73077672 None:intergenic 15.0%
!!! ATGAATTTTTATATGTTTTG+AGG + chr4_4:73077808-73077827 Msa0701650:intron 15.0%
!! AAAAATACATGATAAATCAA+TGG + chr4_4:73078135-73078154 Msa0701650:intron 15.0%
!!! TTGTTATACTTTTAATGTTT+AGG - chr4_4:73078371-73078390 None:intergenic 15.0%
!!! TGATATTTTCATTTAAAATC+AGG - chr4_4:73078424-73078443 None:intergenic 15.0%
!!! TTGATTTAAAATTAATGTCA+AGG - chr4_4:73078456-73078475 None:intergenic 15.0%
!!! TGATAATGAGAAAATAAAAA+TGG + chr4_4:73079662-73079681 Msa0701650:three_prime_UTR 15.0%
!!! TTAATTAGGTTTTGTTTTGT+TGG + chr4_4:73076977-73076996 Msa0701650:intron 20.0%
!! TTACAAATTGAGTTAAAAAG+GGG - chr4_4:73077495-73077514 None:intergenic 20.0%
!!! CATATTTAACCCTTTTTTTT+TGG - chr4_4:73077562-73077581 None:intergenic 20.0%
!!! AAAAGGGTTAAATATGTTTT+TGG + chr4_4:73077566-73077585 Msa0701650:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr4_4:73078027-73078046 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG - chr4_4:73077654-73077673 None:intergenic 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG + chr4_4:73077657-73077676 Msa0701650:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr4_4:73077684-73077703 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr4_4:73077685-73077704 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr4_4:73077963-73077982 None:intergenic 20.0%
!!! TAGTGATTGAAAATTTTACA+GGG + chr4_4:73077967-73077986 Msa0701650:intron 20.0%
!!! AAGTTGAAGAAAAATTTTAG+AGG + chr4_4:73077995-73078014 Msa0701650:intron 20.0%
!!! AGTTGAAGAAAAATTTTAGA+GGG + chr4_4:73077996-73078015 Msa0701650:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr4_4:73078027-73078046 Msa0701650:intron 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG - chr4_4:73078054-73078073 None:intergenic 20.0%
!!! GACTTAAGAGTTTTTTTTTT+GGG - chr4_4:73078070-73078089 None:intergenic 20.0%
!!! AGACTTAAGAGTTTTTTTTT+TGG - chr4_4:73078071-73078090 None:intergenic 20.0%
!!! GTATTTTTACAATGATAAGT+TGG - chr4_4:73078123-73078142 None:intergenic 20.0%
!!! ATCATTTTCAAAATGTCAAA+AGG + chr4_4:73078194-73078213 Msa0701650:intron 20.0%
!! ACAATATATAGAATAACAAG+TGG + chr4_4:73078258-73078277 Msa0701650:intron 20.0%
!!! CCTAATAAATTGAAGAATTT+TGG - chr4_4:73078679-73078698 None:intergenic 20.0%
!! CCAAAATTCTTCAATTTATT+AGG + chr4_4:73078676-73078695 Msa0701650:intron 20.0%
!!! TTTTTATTTGGGAGTTTTTA+TGG - chr4_4:73078704-73078723 None:intergenic 20.0%
!!! TTCAACGAGTATTTTTATTT+GGG - chr4_4:73078715-73078734 None:intergenic 20.0%
!!! ATTCAACGAGTATTTTTATT+TGG - chr4_4:73078716-73078735 None:intergenic 20.0%
!! AATTAAGTAACATGATTTCT+TGG - chr4_4:73078758-73078777 None:intergenic 20.0%
!! ATCCTTTGTATAATTCTTAT+AGG + chr4_4:73078822-73078841 Msa0701650:intron 20.0%
!! TACCTATAAGAATTATACAA+AGG - chr4_4:73078827-73078846 None:intergenic 20.0%
!!! ATATTCTATGTTTTGTAGAT+TGG + chr4_4:73079116-73079135 Msa0701650:intron 20.0%
!!! TAGTAATTTTGCATTTAACT+AGG - chr4_4:73079222-73079241 None:intergenic 20.0%
!! AACCAAATAGTTTAAGAAAT+TGG + chr4_4:73079563-73079582 Msa0701650:exon 20.0%
!! TTCCAATTTCTTAAACTATT+TGG - chr4_4:73079568-73079587 None:intergenic 20.0%
!!! TACACTCTCTATATTTATTT+TGG - chr4_4:73079873-73079892 None:intergenic 20.0%
! AATACAGTTAATAGCAGAAA+TGG + chr4_4:73077002-73077021 Msa0701650:intron 25.0%
! ACATATTTCTTGATATTTGC+AGG + chr4_4:73077030-73077049 Msa0701650:CDS 25.0%
!!! TTCTTGATTAGCTACTTTTT+CGG + chr4_4:73077398-73077417 Msa0701650:intron 25.0%
! AAAGAGTCTTAATTTCTTGT+GGG - chr4_4:73077440-73077459 None:intergenic 25.0%
! TAAAGAGTCTTAATTTCTTG+TGG - chr4_4:73077441-73077460 None:intergenic 25.0%
!! TTTTCAATTTCAAGAGAAGT+GGG - chr4_4:73077467-73077486 None:intergenic 25.0%
! TACAAATTGAGTTAAAAAGG+GGG - chr4_4:73077494-73077513 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr4_4:73078026-73078045 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr4_4:73077624-73077643 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr4_4:73077625-73077644 None:intergenic 25.0%
!! GTAGTGATTGAAAATTTTAC+AGG + chr4_4:73077966-73077985 Msa0701650:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr4_4:73078026-73078045 Msa0701650:intron 25.0%
! TTAGAATGATTCATTACTCT+CGG + chr4_4:73078281-73078300 Msa0701650:intron 25.0%
!! TTAATCCAACCCAAATTTTA+AGG + chr4_4:73078341-73078360 Msa0701650:intron 25.0%
!! TAATCCAACCCAAATTTTAA+GGG + chr4_4:73078342-73078361 Msa0701650:intron 25.0%
! TTAGGTAACCCTTAAAATTT+GGG - chr4_4:73078353-73078372 None:intergenic 25.0%
! TTTAGGTAACCCTTAAAATT+TGG - chr4_4:73078354-73078373 None:intergenic 25.0%
!! TCTCATTGGTAATAAAATGA+TGG + chr4_4:73078528-73078547 Msa0701650:intron 25.0%
! TTCATAATTGCATAACATTG+TGG - chr4_4:73078800-73078819 None:intergenic 25.0%
! ACTCTTAAACTAATATTCAG+TGG + chr4_4:73078895-73078914 Msa0701650:CDS 25.0%
! ATTTAACTAGGTTCTTGATA+GGG - chr4_4:73079210-73079229 None:intergenic 25.0%
! ATCAATTTAGCACCTTAATT+AGG - chr4_4:73079767-73079786 None:intergenic 25.0%
!! TAATTAAGGTGCTAAATTGA+TGG + chr4_4:73079766-73079785 Msa0701650:three_prime_UTR 25.0%
!!! ATTTTGGATTTTTGTTTCTC+TGG - chr4_4:73079857-73079876 None:intergenic 25.0%
! TGTATCTAAAACAACCTCAT+GGG - chr4_4:73076808-73076827 None:intergenic 30.0%
! TTGTATCTAAAACAACCTCA+TGG - chr4_4:73076809-73076828 None:intergenic 30.0%
!!! GGTTGTTTTAGATACAAACA+AGG + chr4_4:73076812-73076831 Msa0701650:CDS 30.0%
GAGTTTGTAAAGGAAAGATT+AGG - chr4_4:73076903-73076922 None:intergenic 30.0%
CTATGTGTATGAGTTTGTAA+AGG - chr4_4:73076913-73076932 None:intergenic 30.0%
!! TTGGTATTGATTTACTCACT+TGG + chr4_4:73077135-73077154 Msa0701650:CDS 30.0%
! TTTTCGGTATAATTATCTGC+AGG + chr4_4:73077414-73077433 Msa0701650:intron 30.0%
! GTTTTCAATTTCAAGAGAAG+TGG - chr4_4:73077468-73077487 None:intergenic 30.0%
ACAAATTGAGTTAAAAAGGG+GGG - chr4_4:73077493-73077512 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr4_4:73077638-73077657 None:intergenic 30.0%
AAAATTGGCATAACTCTCAT+TGG + chr4_4:73078514-73078533 Msa0701650:intron 30.0%
ATTCAAGAACAAAAGCTTGA+AGG - chr4_4:73078963-73078982 None:intergenic 30.0%
GGTAAACATAAGGTAAAATG+TGG - chr4_4:73078992-73079011 None:intergenic 30.0%
TACCTTATGTTTACCATTTC+TGG + chr4_4:73078997-73079016 Msa0701650:CDS 30.0%
CATTTAACTAGGTTCTTGAT+AGG - chr4_4:73079211-73079230 None:intergenic 30.0%
!!! CACTTTTTTATTTGACAGAC+CGG + chr4_4:73079334-73079353 Msa0701650:intron 30.0%
!! GTAGACAGAAAAACTAGTTT+TGG - chr4_4:73079835-73079854 None:intergenic 30.0%
CTGCACATTAAAAGTAACTT+AGG - chr4_4:73079902-73079921 None:intergenic 30.0%
CTATATATGACCTTGAATCA+AGG - chr4_4:73079929-73079948 None:intergenic 30.0%
TCCTTGTTCTCTATCACTTA+TGG + chr4_4:73076755-73076774 Msa0701650:exon 35.0%
ACAGTTAATAGCAGAAATGG+TGG + chr4_4:73077005-73077024 Msa0701650:intron 35.0%
CAGTTAATAGCAGAAATGGT+GGG + chr4_4:73077006-73077025 Msa0701650:intron 35.0%
TGCTTCAATAGTAGTGAACA+AGG + chr4_4:73077056-73077075 Msa0701650:CDS 35.0%
! AATGATAAGTTGGCGTGAAA+AGG - chr4_4:73078113-73078132 None:intergenic 35.0%
GGAGATATCACTTTACAACT+CGG + chr4_4:73078302-73078321 Msa0701650:intron 35.0%
GTAACCCTTAAAATTTGGGT+TGG - chr4_4:73078349-73078368 None:intergenic 35.0%
GTGATGTTTCTTAAAGCACA+TGG + chr4_4:73078593-73078612 Msa0701650:intron 35.0%
TTATATATCAGCTCAGCTCT+TGG + chr4_4:73078852-73078871 Msa0701650:CDS 35.0%
TATATATCAGCTCAGCTCTT+GGG + chr4_4:73078853-73078872 Msa0701650:CDS 35.0%
CTCCAGAAATGGTAAACATA+AGG - chr4_4:73079002-73079021 None:intergenic 35.0%
! TGTTTTGTAGATTGGTGAGT+TGG + chr4_4:73079124-73079143 Msa0701650:intron 35.0%
TTGCTTAATGTGATGATTGC+AGG + chr4_4:73079173-73079192 Msa0701650:CDS 35.0%
TGCTTAATGTGATGATTGCA+GGG + chr4_4:73079174-73079193 Msa0701650:CDS 35.0%
TACTCATTGTGTACAAAAGC+TGG - chr4_4:73079398-73079417 None:intergenic 35.0%
TTTGTACACAATGAGTACAG+AGG + chr4_4:73079401-73079420 Msa0701650:CDS 35.0%
ACAATGAGTACAGAGGAATA+TGG + chr4_4:73079408-73079427 Msa0701650:CDS 35.0%
!!! ATATTTGTTGTCGCCGATTT+TGG + chr4_4:73079433-73079452 Msa0701650:CDS 35.0%
!!! TATTTGTTGTCGCCGATTTT+GGG + chr4_4:73079434-73079453 Msa0701650:CDS 35.0%
TCTGCATACATGATACTTGA+TGG - chr4_4:73079599-73079618 None:intergenic 35.0%
GTTTGTGTGTAGTAGTACTA+AGG + chr4_4:73079684-73079703 Msa0701650:three_prime_UTR 35.0%
!!! TGATCCTGTGCAGTTTTAAA+AGG + chr4_4:73079719-73079738 Msa0701650:three_prime_UTR 35.0%
CTGCATACACTTCCTAATTA+AGG + chr4_4:73079752-73079771 Msa0701650:three_prime_UTR 35.0%
GCCATAAGTGATAGAGAACA+AGG - chr4_4:73076759-73076778 None:intergenic 40.0%
AGCAAGAATTGAAACCCATG+AGG + chr4_4:73076791-73076810 Msa0701650:CDS 40.0%
GATTCCTCACAAACATGTGA+AGG + chr4_4:73076834-73076853 Msa0701650:CDS 40.0%
CAAGAAAGGGACAGAGATAA+AGG - chr4_4:73076868-73076887 None:intergenic 40.0%
! GAGACACCTTTTGCAAGAAA+GGG - chr4_4:73076881-73076900 None:intergenic 40.0%
TTCCTGGGATTGCAATTGTT+TGG + chr4_4:73077100-73077119 Msa0701650:CDS 40.0%
TCCTGGGATTGCAATTGTTT+GGG + chr4_4:73077101-73077120 Msa0701650:CDS 40.0%
TGTTTGGGGACTAACTTTGT+TGG + chr4_4:73077116-73077135 Msa0701650:CDS 40.0%
TACTCACTTGGTCATATCTC+TGG + chr4_4:73077147-73077166 Msa0701650:CDS 40.0%
GCAAAAGCAATAGTAACAGC+AGG - chr4_4:73077186-73077205 None:intergenic 40.0%
!! CTATTGCTTTTGCTACCACA+AGG + chr4_4:73077193-73077212 Msa0701650:CDS 40.0%
TAACAATGGAAACCTCCTTG+TGG - chr4_4:73077211-73077230 None:intergenic 40.0%
AAGGAGGTTTCCATTGTTAC+AGG + chr4_4:73077212-73077231 Msa0701650:CDS 40.0%
!! GTAGTGTTGACCTGTAACAA+TGG - chr4_4:73077225-73077244 None:intergenic 40.0%
AGCTGAGCTGATATATAAGC+TGG - chr4_4:73078850-73078869 None:intergenic 40.0%
!! ATGGAAGTGTTCCTGAAAAG+TGG - chr4_4:73078930-73078949 None:intergenic 40.0%
!! TTTTCAGGAACACTTCCATC+TGG + chr4_4:73078931-73078950 Msa0701650:CDS 40.0%
TTTCAGGAACACTTCCATCT+GGG + chr4_4:73078932-73078951 Msa0701650:CDS 40.0%
TGAGTTTACCGCTCTAGTAT+CGG - chr4_4:73079031-73079050 None:intergenic 40.0%
TGTAGACCCAATTGCAATTC+CGG - chr4_4:73079150-73079169 None:intergenic 40.0%
TTATTTGACAGACCGGTAAC+AGG + chr4_4:73079341-73079360 Msa0701650:intron 40.0%
TTCATTGATGCTCCTGTTAC+CGG - chr4_4:73079356-73079375 None:intergenic 40.0%
!!! ATTTGTTGTCGCCGATTTTG+GGG + chr4_4:73079435-73079454 Msa0701650:CDS 40.0%
!!! AGCTCCTTTTAAAACTGCAC+AGG - chr4_4:73079726-73079745 None:intergenic 40.0%
AGAGCCTTCACATGTTTGTG+AGG - chr4_4:73076841-73076860 None:intergenic 45.0%
TCACAAACATGTGAAGGCTC+TGG + chr4_4:73076840-73076859 Msa0701650:CDS 45.0%
CTCTGTCCCTTTCTTGCAAA+AGG + chr4_4:73076872-73076891 Msa0701650:CDS 45.0%
! GGAGACACCTTTTGCAAGAA+AGG - chr4_4:73076882-73076901 None:intergenic 45.0%
ACAACGTGGTAACACTTCCT+GGG + chr4_4:73077085-73077104 Msa0701650:CDS 45.0%
CCTGGGATTGCAATTGTTTG+GGG + chr4_4:73077102-73077121 Msa0701650:CDS 45.0%
!! TTGCTTTTGCTACCACAAGG+AGG + chr4_4:73077196-73077215 Msa0701650:CDS 45.0%
! TTGTAGATTGGTGAGTTGGC+CGG + chr4_4:73079128-73079147 Msa0701650:intron 45.0%
AGTTGGCCGGAATTGCAATT+GGG + chr4_4:73079141-73079160 Msa0701650:CDS 45.0%
!! AACAGGAGCATCAATGAACC+CGG + chr4_4:73079358-73079377 Msa0701650:CDS 45.0%
ATGAACCCGGTTAGAACTCT+AGG + chr4_4:73079371-73079390 Msa0701650:CDS 45.0%
!!! TTTGTTGTCGCCGATTTTGG+GGG + chr4_4:73079436-73079455 Msa0701650:CDS 45.0%
CATGGGTCTACAACACTGTT+AGG + chr4_4:73079471-73079490 Msa0701650:CDS 45.0%
TTTGAGGAAGGATGCACTCT+GGG - chr4_4:73079525-73079544 None:intergenic 45.0%
CATCCTTCCTCAAAGAAGCT+GGG + chr4_4:73079531-73079550 Msa0701650:CDS 45.0%
GTGCAGAAGACCTTGATTCA+AGG + chr4_4:73079916-73079935 Msa0701650:three_prime_UTR 45.0%
!!! AATTTTTTTTTTTTTAATCT+TGG + chr4_4:73077374-73077393 Msa0701650:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+AGG + chr4_4:73077862-73077881 Msa0701650:intron 5.0%
GAACAAGGACAACGACAACG+TGG + chr4_4:73077071-73077090 Msa0701650:CDS 50.0%
GACAACGTGGTAACACTTCC+TGG + chr4_4:73077084-73077103 Msa0701650:CDS 50.0%
CCCCAAACAATTGCAATCCC+AGG - chr4_4:73077105-73077124 None:intergenic 50.0%
! TTGGGAGCAACACTTGCTAG+TGG + chr4_4:73078871-73078890 Msa0701650:CDS 50.0%
!! GGCACACATGACCACTTTTC+AGG + chr4_4:73078916-73078935 Msa0701650:CDS 50.0%
GCTTGAAGGTTAGACCCAGA+TGG - chr4_4:73078949-73078968 None:intergenic 50.0%
ATCGGTGGCAACTCCAGAAA+TGG - chr4_4:73079013-73079032 None:intergenic 50.0%
AGTTGCCACCGATACTAGAG+CGG + chr4_4:73079020-73079039 Msa0701650:CDS 50.0%
! GTTTACCGCTCTAGTATCGG+TGG - chr4_4:73079028-73079047 None:intergenic 50.0%
GAGTTGGCCGGAATTGCAAT+TGG + chr4_4:73079140-73079159 Msa0701650:CDS 50.0%
! CTGGTCCTAGAGTTCTAACC+GGG - chr4_4:73079379-73079398 None:intergenic 50.0%
! GCTGGTCCTAGAGTTCTAAC+CGG - chr4_4:73079380-73079399 None:intergenic 50.0%
AGTGTTGTAGACCCATGCTC+CGG - chr4_4:73079468-73079487 None:intergenic 50.0%
! CTTTGAGGAAGGATGCACTC+TGG - chr4_4:73079526-73079545 None:intergenic 50.0%
GCATCCTTCCTCAAAGAAGC+TGG + chr4_4:73079530-73079549 Msa0701650:CDS 50.0%
CTCTGGGTGATCTCACGCAA+TGG - chr4_4:73079509-73079528 None:intergenic 55.0%
! ACGCCCAGCTTCTTTGAGGA+AGG - chr4_4:73079537-73079556 None:intergenic 55.0%
TTCCTCAAAGAAGCTGGGCG+TGG + chr4_4:73079536-73079555 Msa0701650:CDS 55.0%
TCAAAGAAGCTGGGCGTGGT+GGG + chr4_4:73079540-73079559 Msa0701650:CDS 55.0%
CACCACGCCCAGCTTCTTTG+AGG - chr4_4:73079541-73079560 None:intergenic 60.0%
CTCAAAGAAGCTGGGCGTGG+TGG + chr4_4:73079539-73079558 Msa0701650:CDS 60.0%
CCGGCGATGGCCCCCAAAAT+CGG - chr4_4:73079449-73079468 None:intergenic 65.0%
!! CCGATTTTGGGGGCCATCGC+CGG + chr4_4:73079446-73079465 Msa0701650:CDS 65.0%
GTAGACCCATGCTCCGGCGA+TGG - chr4_4:73079462-73079481 None:intergenic 65.0%
TGGGGGCCATCGCCGGAGCA+TGG + chr4_4:73079453-73079472 Msa0701650:CDS 75.0%
GGGGGCCATCGCCGGAGCAT+GGG + chr4_4:73079454-73079473 Msa0701650:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 73076690 73080006 73076690 ID=Msa0701650;Name=Msa0701650
chr4_4 mRNA 73076690 73080006 73076690 ID=Msa0701650-mRNA-1;Parent=Msa0701650;Name=Msa0701650-mRNA-1;_AED=0.27;_eAED=0.27;_QI=84|1|1|1|1|1|5|429|276
chr4_4 exon 73076690 73076893 73076690 ID=Msa0701650-mRNA-1:exon:22356;Parent=Msa0701650-mRNA-1
chr4_4 exon 73077009 73077233 73077009 ID=Msa0701650-mRNA-1:exon:22357;Parent=Msa0701650-mRNA-1
chr4_4 exon 73078844 73079041 73078844 ID=Msa0701650-mRNA-1:exon:22358;Parent=Msa0701650-mRNA-1
chr4_4 exon 73079134 73079195 73079134 ID=Msa0701650-mRNA-1:exon:22359;Parent=Msa0701650-mRNA-1
chr4_4 exon 73079352 73080006 73079352 ID=Msa0701650-mRNA-1:exon:22360;Parent=Msa0701650-mRNA-1
chr4_4 five_prime_UTR 73076690 73076773 73076690 ID=Msa0701650-mRNA-1:five_prime_utr;Parent=Msa0701650-mRNA-1
chr4_4 CDS 73076774 73076893 73076774 ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1
chr4_4 CDS 73077009 73077233 73077009 ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1
chr4_4 CDS 73078844 73079041 73078844 ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1
chr4_4 CDS 73079134 73079195 73079134 ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1
chr4_4 CDS 73079352 73079577 73079352 ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1
chr4_4 three_prime_UTR 73079578 73080006 73079578 ID=Msa0701650-mRNA-1:three_prime_utr;Parent=Msa0701650-mRNA-1
Gene Sequence

>Msa0701650

ATGGCAAATGATAATTCAGCAAGAATTGAAACCCATGAGGTTGTTTTAGATACAAACAAGGATTCCTCACAAACATGTGAAGGCTCTGGCTCCTTTATCTCTGTCCCTTTCTTGCAAAAGTTAATAGCAGAAATGGTGGGCACATATTTCTTGATATTTGCAGGATGTGCTTCAATAGTAGTGAACAAGGACAACGACAACGTGGTAACACTTCCTGGGATTGCAATTGTTTGGGGACTAACTTTGTTGGTATTGATTTACTCACTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACCACAAGGAGGTTTCCATTGTTACAGGTACCAGCTTATATATCAGCTCAGCTCTTGGGAGCAACACTTGCTAGTGGAACTCTTAAACTAATATTCAGTGGCACACATGACCACTTTTCAGGAACACTTCCATCTGGGTCTAACCTTCAAGCTTTTGTTCTTGAATTCATAACCACATTTTACCTTATGTTTACCATTTCTGGAGTTGCCACCGATACTAGAGCGATTGGTGAGTTGGCCGGAATTGCAATTGGGTCTACATTATTGCTTAATGTGATGATTGCAGGACCGGTAACAGGAGCATCAATGAACCCGGTTAGAACTCTAGGACCAGCTTTTGTACACAATGAGTACAGAGGAATATGGATATATTTGTTGTCGCCGATTTTGGGGGCCATCGCCGGAGCATGGGTCTACAACACTGTTAGGTACACTAACAAGCCATTGCGTGAGATCACCCAGAGTGCATCCTTCCTCAAAGAAGCTGGGCGTGGTGGGAACCAAATAGTTTAA

Protein sequence

>Msa0701650

MANDNSARIETHEVVLDTNKDSSQTCEGSGSFISVPFLQKLIAEMVGTYFLIFAGCASIVVNKDNDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGATLASGTLKLIFSGTHDHFSGTLPSGSNLQAFVLEFITTFYLMFTISGVATDTRAIGELAGIAIGSTLLLNVMIAGPVTGASMNPVRTLGPAFVHNEYRGIWIYLLSPILGAIAGAWVYNTVRYTNKPLREITQSASFLKEAGRGGNQIV*