Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701650 | XP_003629862.1 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 550 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701650 | sp|P08995|NO26_SOYBN | 71.956 | 271 | 74 | 1 | 4 | 274 | 3 | 271 | 5.32e-145 | 410 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701650 | Q8W4T7 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 550 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0618670 | Msa0701650 | 0.928485 | 2.702797e-92 | -8.615850e-47 |
Msa0618710 | Msa0701650 | 0.886655 | 2.830252e-72 | -8.615850e-47 |
Msa0701650 | Msa0727190 | -0.801799 | 7.593598e-49 | -8.615850e-47 |
Msa0565710 | Msa0701650 | 0.828340 | 9.495534e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701650 | MtrunA17_Chr8g0379901 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 550 |
Msa0701650 | MtrunA17_Chr8g0379911 | 73.585 | 265 | 70 | 0 | 4 | 268 | 3 | 267 | 6.03e-151 | 422 |
Msa0701650 | MtrunA17_Chr2g0284581 | 71.218 | 271 | 78 | 0 | 4 | 274 | 3 | 273 | 2.85e-144 | 405 |
Msa0701650 | MtrunA17_Chr2g0284591 | 68.340 | 259 | 82 | 0 | 13 | 271 | 10 | 268 | 3.62e-135 | 382 |
Msa0701650 | MtrunA17_Chr2g0284631 | 64.706 | 272 | 89 | 2 | 4 | 268 | 55 | 326 | 1.69e-130 | 373 |
Msa0701650 | MtrunA17_Chr2g0284611 | 65.789 | 266 | 91 | 0 | 4 | 269 | 3 | 268 | 1.47e-128 | 365 |
Msa0701650 | MtrunA17_Chr2g0284601 | 74.545 | 220 | 56 | 0 | 55 | 274 | 6 | 225 | 1.14e-122 | 349 |
Msa0701650 | MtrunA17_Chr4g0044201 | 51.292 | 271 | 113 | 3 | 9 | 273 | 1 | 258 | 4.43e-97 | 285 |
Msa0701650 | MtrunA17_Chr5g0435051 | 50.775 | 258 | 119 | 4 | 1 | 254 | 1 | 254 | 2.10e-85 | 256 |
Msa0701650 | MtrunA17_Chr3g0079421 | 53.556 | 239 | 108 | 2 | 19 | 257 | 8 | 243 | 2.59e-83 | 251 |
Msa0701650 | MtrunA17_Chr4g0001221 | 53.680 | 231 | 102 | 2 | 35 | 263 | 71 | 298 | 5.17e-78 | 238 |
Msa0701650 | MtrunA17_Chr2g0333771 | 52.863 | 227 | 102 | 2 | 39 | 263 | 80 | 303 | 3.50e-76 | 234 |
Msa0701650 | MtrunA17_Chr7g0217331 | 48.148 | 216 | 111 | 1 | 37 | 252 | 35 | 249 | 9.77e-73 | 224 |
Msa0701650 | MtrunA17_Chr1g0201331 | 49.362 | 235 | 108 | 3 | 34 | 260 | 69 | 300 | 1.94e-69 | 216 |
Msa0701650 | MtrunA17_Chr5g0426131 | 46.442 | 267 | 117 | 8 | 4 | 261 | 10 | 259 | 1.06e-66 | 208 |
Msa0701650 | MtrunA17_Chr1g0184541 | 40.271 | 221 | 131 | 1 | 33 | 253 | 56 | 275 | 4.06e-49 | 164 |
Msa0701650 | MtrunA17_Chr4g0001111 | 52.000 | 150 | 67 | 2 | 35 | 182 | 71 | 217 | 5.40e-40 | 139 |
Msa0701650 | MtrunA17_Chr4g0001161 | 49.645 | 141 | 66 | 2 | 52 | 190 | 1 | 138 | 3.11e-33 | 118 |
Msa0701650 | MtrunA17_Chr4g0001121 | 56.098 | 82 | 36 | 0 | 182 | 263 | 10 | 91 | 1.96e-28 | 104 |
Msa0701650 | MtrunA17_Chr8g0340161 | 33.028 | 218 | 139 | 3 | 38 | 248 | 18 | 235 | 1.14e-26 | 104 |
Msa0701650 | MtrunA17_Chr2g0331261 | 32.645 | 242 | 145 | 7 | 34 | 264 | 15 | 249 | 2.33e-25 | 100 |
Msa0701650 | MtrunA17_Chr5g0399341 | 33.047 | 233 | 139 | 5 | 38 | 257 | 18 | 246 | 8.11e-25 | 99.4 |
Msa0701650 | MtrunA17_Chr4g0001151 | 45.865 | 133 | 52 | 3 | 52 | 182 | 1 | 115 | 1.22e-23 | 97.8 |
Msa0701650 | MtrunA17_Chr1g0146161 | 31.120 | 241 | 145 | 8 | 13 | 246 | 3 | 229 | 1.85e-23 | 95.9 |
Msa0701650 | MtrunA17_Chr1g0188771 | 32.444 | 225 | 143 | 5 | 38 | 254 | 20 | 243 | 2.33e-23 | 95.9 |
Msa0701650 | MtrunA17_Chr6g0478191 | 32.159 | 227 | 141 | 5 | 38 | 254 | 20 | 243 | 6.24e-23 | 94.7 |
Msa0701650 | MtrunA17_Chr1g0146171 | 31.102 | 254 | 148 | 11 | 13 | 255 | 3 | 240 | 1.01e-22 | 94.0 |
Msa0701650 | MtrunA17_Chr3g0145671 | 31.222 | 221 | 137 | 5 | 37 | 242 | 35 | 255 | 1.19e-22 | 94.4 |
Msa0701650 | MtrunA17_Chr7g0264961 | 33.180 | 217 | 135 | 6 | 38 | 246 | 20 | 234 | 3.38e-21 | 89.7 |
Msa0701650 | MtrunA17_Chr1g0212671 | 32.759 | 232 | 142 | 7 | 38 | 257 | 20 | 249 | 5.73e-21 | 89.4 |
Msa0701650 | MtrunA17_Chr2g0326621 | 30.837 | 227 | 133 | 6 | 39 | 242 | 40 | 265 | 1.14e-20 | 89.4 |
Msa0701650 | MtrunA17_Chr7g0264111 | 30.357 | 224 | 133 | 6 | 37 | 238 | 37 | 259 | 3.42e-20 | 87.8 |
Msa0701650 | MtrunA17_Chr4g0030861 | 32.287 | 223 | 142 | 5 | 44 | 258 | 26 | 247 | 4.06e-20 | 87.0 |
Msa0701650 | MtrunA17_Chr4g0006001 | 28.409 | 264 | 164 | 8 | 1 | 248 | 26 | 280 | 8.20e-20 | 87.0 |
Msa0701650 | MtrunA17_Chr1g0199731 | 28.390 | 236 | 142 | 5 | 37 | 248 | 37 | 269 | 9.46e-20 | 86.7 |
Msa0701650 | MtrunA17_Chr8g0386961 | 28.369 | 282 | 173 | 9 | 2 | 259 | 11 | 287 | 1.56e-19 | 85.9 |
Msa0701650 | MtrunA17_Chr4g0029071 | 30.568 | 229 | 134 | 7 | 37 | 242 | 37 | 263 | 7.81e-19 | 84.0 |
Msa0701650 | MtrunA17_Chr5g0397391 | 29.289 | 239 | 145 | 7 | 30 | 248 | 43 | 277 | 8.97e-19 | 84.0 |
Msa0701650 | MtrunA17_Chr5g0436701 | 29.707 | 239 | 145 | 7 | 37 | 256 | 53 | 287 | 9.88e-19 | 84.0 |
Msa0701650 | MtrunA17_Chr3g0113211 | 26.236 | 263 | 177 | 6 | 10 | 256 | 26 | 287 | 1.84e-18 | 83.2 |
Msa0701650 | MtrunA17_Chr4g0020781 | 31.492 | 181 | 121 | 2 | 75 | 253 | 20 | 199 | 1.94e-16 | 76.3 |
Msa0701650 | MtrunA17_Chr7g0222791 | 27.706 | 231 | 160 | 3 | 38 | 261 | 20 | 250 | 1.82e-14 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0701650 | AT4G18910.1 | 71.486 | 249 | 64 | 1 | 33 | 274 | 46 | 294 | 3.17e-131 | 374 |
Msa0701650 | AT4G19030.1 | 68.045 | 266 | 78 | 1 | 8 | 266 | 24 | 289 | 1.59e-128 | 367 |
Msa0701650 | AT5G37820.1 | 60.000 | 235 | 94 | 0 | 39 | 273 | 43 | 277 | 2.40e-101 | 297 |
Msa0701650 | AT5G37820.2 | 60.000 | 235 | 94 | 0 | 39 | 273 | 79 | 313 | 6.33e-101 | 298 |
Msa0701650 | AT5G37810.1 | 53.333 | 270 | 119 | 2 | 3 | 266 | 2 | 270 | 6.26e-100 | 294 |
Msa0701650 | AT1G31885.1 | 52.399 | 271 | 118 | 2 | 1 | 260 | 1 | 271 | 2.57e-98 | 291 |
Msa0701650 | AT2G34390.1 | 53.101 | 258 | 113 | 2 | 17 | 267 | 26 | 282 | 7.44e-91 | 271 |
Msa0701650 | AT4G18910.2 | 73.446 | 177 | 40 | 1 | 33 | 202 | 46 | 222 | 1.17e-89 | 265 |
Msa0701650 | AT4G19030.3 | 65.672 | 201 | 62 | 1 | 8 | 201 | 24 | 224 | 6.52e-88 | 261 |
Msa0701650 | AT1G31885.2 | 55.760 | 217 | 89 | 1 | 51 | 260 | 1 | 217 | 2.19e-86 | 259 |
Msa0701650 | AT2G34390.2 | 53.782 | 238 | 102 | 2 | 37 | 267 | 4 | 240 | 2.62e-85 | 255 |
Msa0701650 | AT4G19030.2 | 63.187 | 182 | 60 | 1 | 8 | 182 | 24 | 205 | 5.28e-76 | 231 |
Msa0701650 | AT1G80760.1 | 50.820 | 244 | 113 | 3 | 12 | 253 | 55 | 293 | 3.20e-73 | 226 |
Msa0701650 | AT4G10380.1 | 48.819 | 254 | 119 | 3 | 15 | 260 | 54 | 304 | 1.07e-72 | 225 |
Msa0701650 | AT2G34390.3 | 55.959 | 193 | 77 | 2 | 17 | 202 | 26 | 217 | 1.45e-68 | 212 |
Msa0701650 | AT2G34390.4 | 55.429 | 175 | 70 | 2 | 17 | 184 | 26 | 199 | 6.81e-62 | 195 |
Msa0701650 | AT3G06100.1 | 38.057 | 247 | 150 | 3 | 10 | 254 | 16 | 261 | 7.80e-48 | 160 |
Msa0701650 | AT3G06100.2 | 40.654 | 214 | 125 | 2 | 42 | 254 | 1 | 213 | 3.97e-47 | 157 |
Msa0701650 | AT1G31885.3 | 48.936 | 141 | 65 | 2 | 1 | 134 | 1 | 141 | 1.60e-37 | 130 |
Msa0701650 | AT3G16240.1 | 33.476 | 233 | 137 | 6 | 30 | 248 | 7 | 235 | 2.69e-29 | 112 |
Msa0701650 | AT2G29870.1 | 52.688 | 93 | 44 | 0 | 154 | 246 | 20 | 112 | 7.43e-28 | 104 |
Msa0701650 | AT5G47450.1 | 32.636 | 239 | 151 | 4 | 30 | 258 | 10 | 248 | 1.83e-27 | 107 |
Msa0701650 | AT3G06100.3 | 38.298 | 141 | 85 | 2 | 115 | 254 | 41 | 180 | 3.04e-25 | 99.8 |
Msa0701650 | AT4G17340.1 | 30.252 | 238 | 156 | 4 | 30 | 257 | 10 | 247 | 1.43e-24 | 99.4 |
Msa0701650 | AT4G35100.1 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 2.39e-23 | 96.7 |
Msa0701650 | AT4G35100.2 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 2.39e-23 | 96.7 |
Msa0701650 | AT3G26520.1 | 33.486 | 218 | 138 | 3 | 38 | 248 | 21 | 238 | 7.48e-23 | 94.7 |
Msa0701650 | AT1G17810.1 | 34.286 | 175 | 111 | 2 | 91 | 261 | 86 | 260 | 5.04e-22 | 92.8 |
Msa0701650 | AT2G16850.1 | 30.769 | 221 | 138 | 5 | 37 | 242 | 34 | 254 | 5.12e-22 | 93.2 |
Msa0701650 | AT2G36830.1 | 34.434 | 212 | 131 | 4 | 38 | 241 | 20 | 231 | 9.71e-22 | 91.7 |
Msa0701650 | AT5G60660.1 | 29.362 | 235 | 143 | 6 | 36 | 248 | 36 | 269 | 6.44e-21 | 90.1 |
Msa0701650 | AT2G39010.1 | 29.060 | 234 | 143 | 6 | 37 | 248 | 36 | 268 | 1.01e-20 | 89.7 |
Msa0701650 | AT2G25810.1 | 32.420 | 219 | 135 | 7 | 38 | 248 | 18 | 231 | 2.86e-20 | 87.8 |
Msa0701650 | AT1G73190.1 | 35.542 | 166 | 103 | 3 | 92 | 254 | 87 | 251 | 2.90e-20 | 88.2 |
Msa0701650 | AT4G23400.1 | 28.629 | 248 | 155 | 6 | 30 | 259 | 44 | 287 | 6.85e-20 | 87.4 |
Msa0701650 | AT2G37170.1 | 28.879 | 232 | 142 | 6 | 39 | 248 | 37 | 267 | 1.06e-19 | 87.0 |
Msa0701650 | AT2G37170.2 | 28.879 | 232 | 142 | 6 | 39 | 248 | 80 | 310 | 1.25e-19 | 87.4 |
Msa0701650 | AT3G61430.2 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 1.51e-19 | 86.3 |
Msa0701650 | AT3G61430.1 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 1.51e-19 | 86.3 |
Msa0701650 | AT4G01470.1 | 35.465 | 172 | 107 | 3 | 80 | 248 | 67 | 237 | 2.82e-19 | 85.1 |
Msa0701650 | AT1G01620.1 | 29.412 | 238 | 145 | 5 | 30 | 248 | 43 | 276 | 3.00e-19 | 85.5 |
Msa0701650 | AT3G54820.1 | 28.326 | 233 | 146 | 5 | 37 | 248 | 36 | 268 | 3.70e-19 | 85.5 |
Msa0701650 | AT3G53420.1 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.36e-19 | 85.1 |
Msa0701650 | AT3G53420.2 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.36e-19 | 85.1 |
Msa0701650 | AT4G00430.1 | 27.509 | 269 | 170 | 6 | 2 | 248 | 12 | 277 | 4.54e-19 | 85.1 |
Msa0701650 | AT2G45960.1 | 28.745 | 247 | 152 | 7 | 30 | 257 | 43 | 284 | 7.55e-19 | 84.3 |
Msa0701650 | AT3G47440.1 | 29.224 | 219 | 145 | 4 | 38 | 248 | 22 | 238 | 2.87e-18 | 82.4 |
Msa0701650 | AT2G37180.1 | 28.448 | 232 | 143 | 6 | 39 | 248 | 37 | 267 | 1.22e-17 | 81.3 |
Msa0701650 | AT1G01620.2 | 31.720 | 186 | 107 | 4 | 69 | 238 | 13 | 194 | 1.46e-16 | 77.0 |
Msa0701650 | AT2G45960.2 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.09e-16 | 77.4 |
Msa0701650 | AT2G45960.3 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.16e-16 | 77.8 |
Msa0701650 | AT2G39010.2 | 29.936 | 157 | 96 | 4 | 37 | 180 | 36 | 191 | 9.19e-12 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCTTATGTTTACCATTTC+TGG | 0.053365 | 4_4:+73078997 | Msa0701650:CDS |
TACACTCTCTATATTTATTT+TGG | 0.109717 | 4_4:-73079870 | None:intergenic |
ATATTTGTTGTCGCCGATTT+TGG | 0.136028 | 4_4:+73079433 | Msa0701650:CDS |
TTCCAATTTCTTAAACTATT+TGG | 0.141022 | 4_4:-73079565 | None:intergenic |
AACCAAATAGTTTAAGAAAT+TGG | 0.160387 | 4_4:+73079563 | Msa0701650:exon |
TCCTGGGATTGCAATTGTTT+GGG | 0.194809 | 4_4:+73077101 | Msa0701650:CDS |
TCCTTGTTCTCTATCACTTA+TGG | 0.247542 | 4_4:+73076755 | Msa0701650:exon |
TTCATTGATGCTCCTGTTAC+CGG | 0.292955 | 4_4:-73079353 | None:intergenic |
AAATTGGAGTCGTTTATTTC+AGG | 0.294484 | 4_4:+73076679 | None:intergenic |
TTCCTGGGATTGCAATTGTT+TGG | 0.304422 | 4_4:+73077100 | Msa0701650:CDS |
ATCAATTTAGCACCTTAATT+AGG | 0.305497 | 4_4:-73079764 | None:intergenic |
CTGCATACACTTCCTAATTA+AGG | 0.312351 | 4_4:+73079752 | Msa0701650:three_prime_UTR |
AAGGAGGTTTCCATTGTTAC+AGG | 0.315994 | 4_4:+73077212 | Msa0701650:CDS |
ACATATTTCTTGATATTTGC+AGG | 0.316106 | 4_4:+73077030 | Msa0701650:CDS |
CTCTGTCCCTTTCTTGCAAA+AGG | 0.317695 | 4_4:+73076872 | Msa0701650:CDS |
TGTAGACCCAATTGCAATTC+CGG | 0.343788 | 4_4:-73079147 | None:intergenic |
TAATTAAGGTGCTAAATTGA+TGG | 0.365761 | 4_4:+73079766 | Msa0701650:three_prime_UTR |
CAAGAAAGGGACAGAGATAA+AGG | 0.377304 | 4_4:-73076865 | None:intergenic |
GACAACGTGGTAACACTTCC+TGG | 0.380447 | 4_4:+73077084 | Msa0701650:CDS |
TACTCACTTGGTCATATCTC+TGG | 0.390477 | 4_4:+73077147 | Msa0701650:CDS |
CACCACGCCCAGCTTCTTTG+AGG | 0.393307 | 4_4:-73079538 | None:intergenic |
TTATTTGACAGACCGGTAAC+AGG | 0.396494 | 4_4:+73079341 | Msa0701650:intron |
TTGCTTAATGTGATGATTGC+AGG | 0.400582 | 4_4:+73079173 | Msa0701650:CDS |
TCTGCATACATGATACTTGA+TGG | 0.407893 | 4_4:-73079596 | None:intergenic |
AATACAGTTAATAGCAGAAA+TGG | 0.417887 | 4_4:+73077002 | Msa0701650:intron |
CTGCACATTAAAAGTAACTT+AGG | 0.427053 | 4_4:-73079899 | None:intergenic |
GCTGGTCCTAGAGTTCTAAC+CGG | 0.437239 | 4_4:-73079377 | None:intergenic |
GAGTTGGCCGGAATTGCAAT+TGG | 0.443767 | 4_4:+73079140 | Msa0701650:CDS |
TTATATATCAGCTCAGCTCT+TGG | 0.447897 | 4_4:+73078852 | Msa0701650:CDS |
CATGGGTCTACAACACTGTT+AGG | 0.451802 | 4_4:+73079471 | Msa0701650:CDS |
CTTTGAGGAAGGATGCACTC+TGG | 0.452465 | 4_4:-73079523 | None:intergenic |
ATTCAAGAACAAAAGCTTGA+AGG | 0.459020 | 4_4:-73078960 | None:intergenic |
AAGTGTATATATGATTATCA+AGG | 0.459227 | 4_4:-73079995 | None:intergenic |
CTCCAGAAATGGTAAACATA+AGG | 0.466289 | 4_4:-73078999 | None:intergenic |
GCATCCTTCCTCAAAGAAGC+TGG | 0.467151 | 4_4:+73079530 | Msa0701650:CDS |
ATCGGTGGCAACTCCAGAAA+TGG | 0.467754 | 4_4:-73079010 | None:intergenic |
CCTGGGATTGCAATTGTTTG+GGG | 0.472067 | 4_4:+73077102 | Msa0701650:CDS |
TATATATCAGCTCAGCTCTT+GGG | 0.473337 | 4_4:+73078853 | Msa0701650:CDS |
TTTGAGGAAGGATGCACTCT+GGG | 0.475411 | 4_4:-73079522 | None:intergenic |
TGTTTGGGGACTAACTTTGT+TGG | 0.484275 | 4_4:+73077116 | Msa0701650:CDS |
AGTTGGCCGGAATTGCAATT+GGG | 0.485520 | 4_4:+73079141 | Msa0701650:CDS |
GTAGACCCATGCTCCGGCGA+TGG | 0.495881 | 4_4:-73079459 | None:intergenic |
TTGTATCTAAAACAACCTCA+TGG | 0.499097 | 4_4:-73076806 | None:intergenic |
CCCCAAACAATTGCAATCCC+AGG | 0.504953 | 4_4:-73077102 | None:intergenic |
GAGTCGTTTATTTCAGGTTG+AGG | 0.505598 | 4_4:+73076685 | None:intergenic |
TACTCATTGTGTACAAAAGC+TGG | 0.505829 | 4_4:-73079395 | None:intergenic |
GTGCAGAAGACCTTGATTCA+AGG | 0.506676 | 4_4:+73079916 | Msa0701650:three_prime_UTR |
ACAATGAGTACAGAGGAATA+TGG | 0.514676 | 4_4:+73079408 | Msa0701650:CDS |
TTGTAGATTGGTGAGTTGGC+CGG | 0.514724 | 4_4:+73079128 | Msa0701650:intron |
TCACAAACATGTGAAGGCTC+TGG | 0.518719 | 4_4:+73076840 | Msa0701650:CDS |
ATGAACCCGGTTAGAACTCT+AGG | 0.519479 | 4_4:+73079371 | Msa0701650:CDS |
CTCAAAGAAGCTGGGCGTGG+TGG | 0.520816 | 4_4:+73079539 | Msa0701650:CDS |
AGTGTATATATGATTATCAA+GGG | 0.526044 | 4_4:-73079994 | None:intergenic |
TTTCAGGAACACTTCCATCT+GGG | 0.526344 | 4_4:+73078932 | Msa0701650:CDS |
TTCCTCAAAGAAGCTGGGCG+TGG | 0.532484 | 4_4:+73079536 | Msa0701650:CDS |
TGTATCTAAAACAACCTCAT+GGG | 0.536127 | 4_4:-73076805 | None:intergenic |
CTATATATGACCTTGAATCA+AGG | 0.539301 | 4_4:-73079926 | None:intergenic |
AGCTGAGCTGATATATAAGC+TGG | 0.541389 | 4_4:-73078847 | None:intergenic |
TCAAAGAAGCTGGGCGTGGT+GGG | 0.548515 | 4_4:+73079540 | Msa0701650:CDS |
GCAAAAGCAATAGTAACAGC+AGG | 0.549342 | 4_4:-73077183 | None:intergenic |
TTGGTATTGATTTACTCACT+TGG | 0.550812 | 4_4:+73077135 | Msa0701650:CDS |
GTTTGTGTGTAGTAGTACTA+AGG | 0.555212 | 4_4:+73079684 | Msa0701650:three_prime_UTR |
TGAGTTTACCGCTCTAGTAT+CGG | 0.558198 | 4_4:-73079028 | None:intergenic |
CTCTGGGTGATCTCACGCAA+TGG | 0.559604 | 4_4:-73079506 | None:intergenic |
ACGCCCAGCTTCTTTGAGGA+AGG | 0.561104 | 4_4:-73079534 | None:intergenic |
CTGGTCCTAGAGTTCTAACC+GGG | 0.561868 | 4_4:-73079376 | None:intergenic |
CATCCTTCCTCAAAGAAGCT+GGG | 0.568992 | 4_4:+73079531 | Msa0701650:CDS |
GGTAAACATAAGGTAAAATG+TGG | 0.569076 | 4_4:-73078989 | None:intergenic |
ATGGAAGTGTTCCTGAAAAG+TGG | 0.569487 | 4_4:-73078927 | None:intergenic |
TGCTTAATGTGATGATTGCA+GGG | 0.570893 | 4_4:+73079174 | Msa0701650:CDS |
TCGTTTATTTCAGGTTGAGG+AGG | 0.578693 | 4_4:+73076688 | None:intergenic |
GCCATAAGTGATAGAGAACA+AGG | 0.580173 | 4_4:-73076756 | None:intergenic |
ACAACGTGGTAACACTTCCT+GGG | 0.584721 | 4_4:+73077085 | Msa0701650:CDS |
ACAGTTAATAGCAGAAATGG+TGG | 0.598028 | 4_4:+73077005 | Msa0701650:intron |
AGTGTTGTAGACCCATGCTC+CGG | 0.603956 | 4_4:-73079465 | None:intergenic |
GCTTGAAGGTTAGACCCAGA+TGG | 0.605252 | 4_4:-73078946 | None:intergenic |
TTGGGAGCAACACTTGCTAG+TGG | 0.608245 | 4_4:+73078871 | Msa0701650:CDS |
ACTCTTAAACTAATATTCAG+TGG | 0.615140 | 4_4:+73078895 | Msa0701650:CDS |
GATTCCTCACAAACATGTGA+AGG | 0.617028 | 4_4:+73076834 | Msa0701650:CDS |
GTAGTGTTGACCTGTAACAA+TGG | 0.623661 | 4_4:-73077222 | None:intergenic |
TGCTTCAATAGTAGTGAACA+AGG | 0.624250 | 4_4:+73077056 | Msa0701650:CDS |
AACAGGAGCATCAATGAACC+CGG | 0.626218 | 4_4:+73079358 | Msa0701650:CDS |
AGAGCCTTCACATGTTTGTG+AGG | 0.626868 | 4_4:-73076838 | None:intergenic |
CAGTTAATAGCAGAAATGGT+GGG | 0.636357 | 4_4:+73077006 | Msa0701650:intron |
GTTTACCGCTCTAGTATCGG+TGG | 0.679010 | 4_4:-73079025 | None:intergenic |
AGCAAGAATTGAAACCCATG+AGG | 0.683901 | 4_4:+73076791 | Msa0701650:CDS |
TTTGTACACAATGAGTACAG+AGG | 0.696529 | 4_4:+73079401 | Msa0701650:CDS |
TAACAATGGAAACCTCCTTG+TGG | 0.700560 | 4_4:-73077208 | None:intergenic |
AGTTGCCACCGATACTAGAG+CGG | 0.735236 | 4_4:+73079020 | Msa0701650:CDS |
GAACAAGGACAACGACAACG+TGG | 0.744853 | 4_4:+73077071 | Msa0701650:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAAATATATATAAAAT+TGG | + | chr4_4:73078499-73078518 | Msa0701650:intron | 0.0% |
!! | TATAGTATATTGAATTAATT+AGG | + | chr4_4:73076963-73076982 | Msa0701650:intron | 10.0% |
!! | ATATACAAAAATAAACTTTA+TGG | - | chr4_4:73077264-73077283 | None:intergenic | 10.0% |
!!! | AAAAAGATTATTTTTTTTAC+AGG | - | chr4_4:73077535-73077554 | None:intergenic | 10.0% |
!!! | TTTTTTTTACCAAAAAAAAA+GGG | + | chr4_4:73077550-73077569 | Msa0701650:intron | 10.0% |
!!! | TATAATATTTTGAATTTTTC+TGG | - | chr4_4:73077737-73077756 | None:intergenic | 10.0% |
!!! | AAAAAATTCTGAATTTTTTT+TGG | - | chr4_4:73077769-73077788 | None:intergenic | 10.0% |
!! | CAAAAATTAAATTAAAAATG+AGG | + | chr4_4:73077936-73077955 | Msa0701650:intron | 10.0% |
!!! | TTTTTTTGACAAAAAAATTA+TGG | + | chr4_4:73078557-73078576 | Msa0701650:intron | 10.0% |
!!! | TTAATTTTGCATTTTTTTTA+TGG | - | chr4_4:73079252-73079271 | None:intergenic | 10.0% |
!! | TTTACAAATTGAGTTAAAAA+GGG | - | chr4_4:73077496-73077515 | None:intergenic | 15.0% |
!!! | TTTTACAAATTGAGTTAAAA+AGG | - | chr4_4:73077497-73077516 | None:intergenic | 15.0% |
!!! | CTTTTTTTTACCAAAAAAAA+AGG | + | chr4_4:73077549-73077568 | Msa0701650:intron | 15.0% |
!!! | TGAAGATTGAAAATTTTATA+GGG | - | chr4_4:73077653-73077672 | None:intergenic | 15.0% |
!!! | ATGAATTTTTATATGTTTTG+AGG | + | chr4_4:73077808-73077827 | Msa0701650:intron | 15.0% |
!! | AAAAATACATGATAAATCAA+TGG | + | chr4_4:73078135-73078154 | Msa0701650:intron | 15.0% |
!!! | TTGTTATACTTTTAATGTTT+AGG | - | chr4_4:73078371-73078390 | None:intergenic | 15.0% |
!!! | TGATATTTTCATTTAAAATC+AGG | - | chr4_4:73078424-73078443 | None:intergenic | 15.0% |
!!! | TTGATTTAAAATTAATGTCA+AGG | - | chr4_4:73078456-73078475 | None:intergenic | 15.0% |
!!! | TGATAATGAGAAAATAAAAA+TGG | + | chr4_4:73079662-73079681 | Msa0701650:three_prime_UTR | 15.0% |
!!! | TTAATTAGGTTTTGTTTTGT+TGG | + | chr4_4:73076977-73076996 | Msa0701650:intron | 20.0% |
!! | TTACAAATTGAGTTAAAAAG+GGG | - | chr4_4:73077495-73077514 | None:intergenic | 20.0% |
!!! | CATATTTAACCCTTTTTTTT+TGG | - | chr4_4:73077562-73077581 | None:intergenic | 20.0% |
!!! | AAAAGGGTTAAATATGTTTT+TGG | + | chr4_4:73077566-73077585 | Msa0701650:intron | 20.0% |
!! | GAAAAGTTGACATATTTATA+GGG | - | chr4_4:73078027-73078046 | None:intergenic | 20.0% |
!!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr4_4:73077654-73077673 | None:intergenic | 20.0% |
!!! | AAATTTTCAATCTTCACTTT+TGG | + | chr4_4:73077657-73077676 | Msa0701650:intron | 20.0% |
!!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr4_4:73077684-73077703 | None:intergenic | 20.0% |
!!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr4_4:73077685-73077704 | None:intergenic | 20.0% |
!!! | AAATTTTCAATCACTACTTT+TGG | - | chr4_4:73077963-73077982 | None:intergenic | 20.0% |
!!! | TAGTGATTGAAAATTTTACA+GGG | + | chr4_4:73077967-73077986 | Msa0701650:intron | 20.0% |
!!! | AAGTTGAAGAAAAATTTTAG+AGG | + | chr4_4:73077995-73078014 | Msa0701650:intron | 20.0% |
!!! | AGTTGAAGAAAAATTTTAGA+GGG | + | chr4_4:73077996-73078015 | Msa0701650:intron | 20.0% |
!! | GAAAAGTTGACATATTTATA+GGG | + | chr4_4:73078027-73078046 | Msa0701650:intron | 20.0% |
!!! | TTTTGGGTTAAATATGTTTT+TGG | - | chr4_4:73078054-73078073 | None:intergenic | 20.0% |
!!! | GACTTAAGAGTTTTTTTTTT+GGG | - | chr4_4:73078070-73078089 | None:intergenic | 20.0% |
!!! | AGACTTAAGAGTTTTTTTTT+TGG | - | chr4_4:73078071-73078090 | None:intergenic | 20.0% |
!!! | GTATTTTTACAATGATAAGT+TGG | - | chr4_4:73078123-73078142 | None:intergenic | 20.0% |
!!! | ATCATTTTCAAAATGTCAAA+AGG | + | chr4_4:73078194-73078213 | Msa0701650:intron | 20.0% |
!! | ACAATATATAGAATAACAAG+TGG | + | chr4_4:73078258-73078277 | Msa0701650:intron | 20.0% |
!!! | CCTAATAAATTGAAGAATTT+TGG | - | chr4_4:73078679-73078698 | None:intergenic | 20.0% |
!! | CCAAAATTCTTCAATTTATT+AGG | + | chr4_4:73078676-73078695 | Msa0701650:intron | 20.0% |
!!! | TTTTTATTTGGGAGTTTTTA+TGG | - | chr4_4:73078704-73078723 | None:intergenic | 20.0% |
!!! | TTCAACGAGTATTTTTATTT+GGG | - | chr4_4:73078715-73078734 | None:intergenic | 20.0% |
!!! | ATTCAACGAGTATTTTTATT+TGG | - | chr4_4:73078716-73078735 | None:intergenic | 20.0% |
!! | AATTAAGTAACATGATTTCT+TGG | - | chr4_4:73078758-73078777 | None:intergenic | 20.0% |
!! | ATCCTTTGTATAATTCTTAT+AGG | + | chr4_4:73078822-73078841 | Msa0701650:intron | 20.0% |
!! | TACCTATAAGAATTATACAA+AGG | - | chr4_4:73078827-73078846 | None:intergenic | 20.0% |
!!! | ATATTCTATGTTTTGTAGAT+TGG | + | chr4_4:73079116-73079135 | Msa0701650:intron | 20.0% |
!!! | TAGTAATTTTGCATTTAACT+AGG | - | chr4_4:73079222-73079241 | None:intergenic | 20.0% |
!! | AACCAAATAGTTTAAGAAAT+TGG | + | chr4_4:73079563-73079582 | Msa0701650:exon | 20.0% |
!! | TTCCAATTTCTTAAACTATT+TGG | - | chr4_4:73079568-73079587 | None:intergenic | 20.0% |
!!! | TACACTCTCTATATTTATTT+TGG | - | chr4_4:73079873-73079892 | None:intergenic | 20.0% |
! | AATACAGTTAATAGCAGAAA+TGG | + | chr4_4:73077002-73077021 | Msa0701650:intron | 25.0% |
! | ACATATTTCTTGATATTTGC+AGG | + | chr4_4:73077030-73077049 | Msa0701650:CDS | 25.0% |
!!! | TTCTTGATTAGCTACTTTTT+CGG | + | chr4_4:73077398-73077417 | Msa0701650:intron | 25.0% |
! | AAAGAGTCTTAATTTCTTGT+GGG | - | chr4_4:73077440-73077459 | None:intergenic | 25.0% |
! | TAAAGAGTCTTAATTTCTTG+TGG | - | chr4_4:73077441-73077460 | None:intergenic | 25.0% |
!! | TTTTCAATTTCAAGAGAAGT+GGG | - | chr4_4:73077467-73077486 | None:intergenic | 25.0% |
! | TACAAATTGAGTTAAAAAGG+GGG | - | chr4_4:73077494-73077513 | None:intergenic | 25.0% |
! | CGAAAAGTTGACATATTTAT+AGG | - | chr4_4:73078026-73078045 | None:intergenic | 25.0% |
!! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr4_4:73077624-73077643 | None:intergenic | 25.0% |
!! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr4_4:73077625-73077644 | None:intergenic | 25.0% |
!! | GTAGTGATTGAAAATTTTAC+AGG | + | chr4_4:73077966-73077985 | Msa0701650:intron | 25.0% |
! | CGAAAAGTTGACATATTTAT+AGG | + | chr4_4:73078026-73078045 | Msa0701650:intron | 25.0% |
! | TTAGAATGATTCATTACTCT+CGG | + | chr4_4:73078281-73078300 | Msa0701650:intron | 25.0% |
!! | TTAATCCAACCCAAATTTTA+AGG | + | chr4_4:73078341-73078360 | Msa0701650:intron | 25.0% |
!! | TAATCCAACCCAAATTTTAA+GGG | + | chr4_4:73078342-73078361 | Msa0701650:intron | 25.0% |
! | TTAGGTAACCCTTAAAATTT+GGG | - | chr4_4:73078353-73078372 | None:intergenic | 25.0% |
! | TTTAGGTAACCCTTAAAATT+TGG | - | chr4_4:73078354-73078373 | None:intergenic | 25.0% |
!! | TCTCATTGGTAATAAAATGA+TGG | + | chr4_4:73078528-73078547 | Msa0701650:intron | 25.0% |
! | TTCATAATTGCATAACATTG+TGG | - | chr4_4:73078800-73078819 | None:intergenic | 25.0% |
! | ACTCTTAAACTAATATTCAG+TGG | + | chr4_4:73078895-73078914 | Msa0701650:CDS | 25.0% |
! | ATTTAACTAGGTTCTTGATA+GGG | - | chr4_4:73079210-73079229 | None:intergenic | 25.0% |
! | ATCAATTTAGCACCTTAATT+AGG | - | chr4_4:73079767-73079786 | None:intergenic | 25.0% |
!! | TAATTAAGGTGCTAAATTGA+TGG | + | chr4_4:73079766-73079785 | Msa0701650:three_prime_UTR | 25.0% |
!!! | ATTTTGGATTTTTGTTTCTC+TGG | - | chr4_4:73079857-73079876 | None:intergenic | 25.0% |
! | TGTATCTAAAACAACCTCAT+GGG | - | chr4_4:73076808-73076827 | None:intergenic | 30.0% |
! | TTGTATCTAAAACAACCTCA+TGG | - | chr4_4:73076809-73076828 | None:intergenic | 30.0% |
!!! | GGTTGTTTTAGATACAAACA+AGG | + | chr4_4:73076812-73076831 | Msa0701650:CDS | 30.0% |
GAGTTTGTAAAGGAAAGATT+AGG | - | chr4_4:73076903-73076922 | None:intergenic | 30.0% | |
CTATGTGTATGAGTTTGTAA+AGG | - | chr4_4:73076913-73076932 | None:intergenic | 30.0% | |
!! | TTGGTATTGATTTACTCACT+TGG | + | chr4_4:73077135-73077154 | Msa0701650:CDS | 30.0% |
! | TTTTCGGTATAATTATCTGC+AGG | + | chr4_4:73077414-73077433 | Msa0701650:intron | 30.0% |
! | GTTTTCAATTTCAAGAGAAG+TGG | - | chr4_4:73077468-73077487 | None:intergenic | 30.0% |
ACAAATTGAGTTAAAAAGGG+GGG | - | chr4_4:73077493-73077512 | None:intergenic | 30.0% | |
TTATAGGGACTAAAAGTTGA+AGG | - | chr4_4:73077638-73077657 | None:intergenic | 30.0% | |
AAAATTGGCATAACTCTCAT+TGG | + | chr4_4:73078514-73078533 | Msa0701650:intron | 30.0% | |
ATTCAAGAACAAAAGCTTGA+AGG | - | chr4_4:73078963-73078982 | None:intergenic | 30.0% | |
GGTAAACATAAGGTAAAATG+TGG | - | chr4_4:73078992-73079011 | None:intergenic | 30.0% | |
TACCTTATGTTTACCATTTC+TGG | + | chr4_4:73078997-73079016 | Msa0701650:CDS | 30.0% | |
CATTTAACTAGGTTCTTGAT+AGG | - | chr4_4:73079211-73079230 | None:intergenic | 30.0% | |
!!! | CACTTTTTTATTTGACAGAC+CGG | + | chr4_4:73079334-73079353 | Msa0701650:intron | 30.0% |
!! | GTAGACAGAAAAACTAGTTT+TGG | - | chr4_4:73079835-73079854 | None:intergenic | 30.0% |
CTGCACATTAAAAGTAACTT+AGG | - | chr4_4:73079902-73079921 | None:intergenic | 30.0% | |
CTATATATGACCTTGAATCA+AGG | - | chr4_4:73079929-73079948 | None:intergenic | 30.0% | |
TCCTTGTTCTCTATCACTTA+TGG | + | chr4_4:73076755-73076774 | Msa0701650:exon | 35.0% | |
ACAGTTAATAGCAGAAATGG+TGG | + | chr4_4:73077005-73077024 | Msa0701650:intron | 35.0% | |
CAGTTAATAGCAGAAATGGT+GGG | + | chr4_4:73077006-73077025 | Msa0701650:intron | 35.0% | |
TGCTTCAATAGTAGTGAACA+AGG | + | chr4_4:73077056-73077075 | Msa0701650:CDS | 35.0% | |
! | AATGATAAGTTGGCGTGAAA+AGG | - | chr4_4:73078113-73078132 | None:intergenic | 35.0% |
GGAGATATCACTTTACAACT+CGG | + | chr4_4:73078302-73078321 | Msa0701650:intron | 35.0% | |
GTAACCCTTAAAATTTGGGT+TGG | - | chr4_4:73078349-73078368 | None:intergenic | 35.0% | |
GTGATGTTTCTTAAAGCACA+TGG | + | chr4_4:73078593-73078612 | Msa0701650:intron | 35.0% | |
TTATATATCAGCTCAGCTCT+TGG | + | chr4_4:73078852-73078871 | Msa0701650:CDS | 35.0% | |
TATATATCAGCTCAGCTCTT+GGG | + | chr4_4:73078853-73078872 | Msa0701650:CDS | 35.0% | |
CTCCAGAAATGGTAAACATA+AGG | - | chr4_4:73079002-73079021 | None:intergenic | 35.0% | |
! | TGTTTTGTAGATTGGTGAGT+TGG | + | chr4_4:73079124-73079143 | Msa0701650:intron | 35.0% |
TTGCTTAATGTGATGATTGC+AGG | + | chr4_4:73079173-73079192 | Msa0701650:CDS | 35.0% | |
TGCTTAATGTGATGATTGCA+GGG | + | chr4_4:73079174-73079193 | Msa0701650:CDS | 35.0% | |
TACTCATTGTGTACAAAAGC+TGG | - | chr4_4:73079398-73079417 | None:intergenic | 35.0% | |
TTTGTACACAATGAGTACAG+AGG | + | chr4_4:73079401-73079420 | Msa0701650:CDS | 35.0% | |
ACAATGAGTACAGAGGAATA+TGG | + | chr4_4:73079408-73079427 | Msa0701650:CDS | 35.0% | |
!!! | ATATTTGTTGTCGCCGATTT+TGG | + | chr4_4:73079433-73079452 | Msa0701650:CDS | 35.0% |
!!! | TATTTGTTGTCGCCGATTTT+GGG | + | chr4_4:73079434-73079453 | Msa0701650:CDS | 35.0% |
TCTGCATACATGATACTTGA+TGG | - | chr4_4:73079599-73079618 | None:intergenic | 35.0% | |
GTTTGTGTGTAGTAGTACTA+AGG | + | chr4_4:73079684-73079703 | Msa0701650:three_prime_UTR | 35.0% | |
!!! | TGATCCTGTGCAGTTTTAAA+AGG | + | chr4_4:73079719-73079738 | Msa0701650:three_prime_UTR | 35.0% |
CTGCATACACTTCCTAATTA+AGG | + | chr4_4:73079752-73079771 | Msa0701650:three_prime_UTR | 35.0% | |
GCCATAAGTGATAGAGAACA+AGG | - | chr4_4:73076759-73076778 | None:intergenic | 40.0% | |
AGCAAGAATTGAAACCCATG+AGG | + | chr4_4:73076791-73076810 | Msa0701650:CDS | 40.0% | |
GATTCCTCACAAACATGTGA+AGG | + | chr4_4:73076834-73076853 | Msa0701650:CDS | 40.0% | |
CAAGAAAGGGACAGAGATAA+AGG | - | chr4_4:73076868-73076887 | None:intergenic | 40.0% | |
! | GAGACACCTTTTGCAAGAAA+GGG | - | chr4_4:73076881-73076900 | None:intergenic | 40.0% |
TTCCTGGGATTGCAATTGTT+TGG | + | chr4_4:73077100-73077119 | Msa0701650:CDS | 40.0% | |
TCCTGGGATTGCAATTGTTT+GGG | + | chr4_4:73077101-73077120 | Msa0701650:CDS | 40.0% | |
TGTTTGGGGACTAACTTTGT+TGG | + | chr4_4:73077116-73077135 | Msa0701650:CDS | 40.0% | |
TACTCACTTGGTCATATCTC+TGG | + | chr4_4:73077147-73077166 | Msa0701650:CDS | 40.0% | |
GCAAAAGCAATAGTAACAGC+AGG | - | chr4_4:73077186-73077205 | None:intergenic | 40.0% | |
!! | CTATTGCTTTTGCTACCACA+AGG | + | chr4_4:73077193-73077212 | Msa0701650:CDS | 40.0% |
TAACAATGGAAACCTCCTTG+TGG | - | chr4_4:73077211-73077230 | None:intergenic | 40.0% | |
AAGGAGGTTTCCATTGTTAC+AGG | + | chr4_4:73077212-73077231 | Msa0701650:CDS | 40.0% | |
!! | GTAGTGTTGACCTGTAACAA+TGG | - | chr4_4:73077225-73077244 | None:intergenic | 40.0% |
AGCTGAGCTGATATATAAGC+TGG | - | chr4_4:73078850-73078869 | None:intergenic | 40.0% | |
!! | ATGGAAGTGTTCCTGAAAAG+TGG | - | chr4_4:73078930-73078949 | None:intergenic | 40.0% |
!! | TTTTCAGGAACACTTCCATC+TGG | + | chr4_4:73078931-73078950 | Msa0701650:CDS | 40.0% |
TTTCAGGAACACTTCCATCT+GGG | + | chr4_4:73078932-73078951 | Msa0701650:CDS | 40.0% | |
TGAGTTTACCGCTCTAGTAT+CGG | - | chr4_4:73079031-73079050 | None:intergenic | 40.0% | |
TGTAGACCCAATTGCAATTC+CGG | - | chr4_4:73079150-73079169 | None:intergenic | 40.0% | |
TTATTTGACAGACCGGTAAC+AGG | + | chr4_4:73079341-73079360 | Msa0701650:intron | 40.0% | |
TTCATTGATGCTCCTGTTAC+CGG | - | chr4_4:73079356-73079375 | None:intergenic | 40.0% | |
!!! | ATTTGTTGTCGCCGATTTTG+GGG | + | chr4_4:73079435-73079454 | Msa0701650:CDS | 40.0% |
!!! | AGCTCCTTTTAAAACTGCAC+AGG | - | chr4_4:73079726-73079745 | None:intergenic | 40.0% |
AGAGCCTTCACATGTTTGTG+AGG | - | chr4_4:73076841-73076860 | None:intergenic | 45.0% | |
TCACAAACATGTGAAGGCTC+TGG | + | chr4_4:73076840-73076859 | Msa0701650:CDS | 45.0% | |
CTCTGTCCCTTTCTTGCAAA+AGG | + | chr4_4:73076872-73076891 | Msa0701650:CDS | 45.0% | |
! | GGAGACACCTTTTGCAAGAA+AGG | - | chr4_4:73076882-73076901 | None:intergenic | 45.0% |
ACAACGTGGTAACACTTCCT+GGG | + | chr4_4:73077085-73077104 | Msa0701650:CDS | 45.0% | |
CCTGGGATTGCAATTGTTTG+GGG | + | chr4_4:73077102-73077121 | Msa0701650:CDS | 45.0% | |
!! | TTGCTTTTGCTACCACAAGG+AGG | + | chr4_4:73077196-73077215 | Msa0701650:CDS | 45.0% |
! | TTGTAGATTGGTGAGTTGGC+CGG | + | chr4_4:73079128-73079147 | Msa0701650:intron | 45.0% |
AGTTGGCCGGAATTGCAATT+GGG | + | chr4_4:73079141-73079160 | Msa0701650:CDS | 45.0% | |
!! | AACAGGAGCATCAATGAACC+CGG | + | chr4_4:73079358-73079377 | Msa0701650:CDS | 45.0% |
ATGAACCCGGTTAGAACTCT+AGG | + | chr4_4:73079371-73079390 | Msa0701650:CDS | 45.0% | |
!!! | TTTGTTGTCGCCGATTTTGG+GGG | + | chr4_4:73079436-73079455 | Msa0701650:CDS | 45.0% |
CATGGGTCTACAACACTGTT+AGG | + | chr4_4:73079471-73079490 | Msa0701650:CDS | 45.0% | |
TTTGAGGAAGGATGCACTCT+GGG | - | chr4_4:73079525-73079544 | None:intergenic | 45.0% | |
CATCCTTCCTCAAAGAAGCT+GGG | + | chr4_4:73079531-73079550 | Msa0701650:CDS | 45.0% | |
GTGCAGAAGACCTTGATTCA+AGG | + | chr4_4:73079916-73079935 | Msa0701650:three_prime_UTR | 45.0% | |
!!! | AATTTTTTTTTTTTTAATCT+TGG | + | chr4_4:73077374-73077393 | Msa0701650:intron | 5.0% |
!!! | AAAAAATTCTAATTTTTTTT+AGG | + | chr4_4:73077862-73077881 | Msa0701650:intron | 5.0% |
GAACAAGGACAACGACAACG+TGG | + | chr4_4:73077071-73077090 | Msa0701650:CDS | 50.0% | |
GACAACGTGGTAACACTTCC+TGG | + | chr4_4:73077084-73077103 | Msa0701650:CDS | 50.0% | |
CCCCAAACAATTGCAATCCC+AGG | - | chr4_4:73077105-73077124 | None:intergenic | 50.0% | |
! | TTGGGAGCAACACTTGCTAG+TGG | + | chr4_4:73078871-73078890 | Msa0701650:CDS | 50.0% |
!! | GGCACACATGACCACTTTTC+AGG | + | chr4_4:73078916-73078935 | Msa0701650:CDS | 50.0% |
GCTTGAAGGTTAGACCCAGA+TGG | - | chr4_4:73078949-73078968 | None:intergenic | 50.0% | |
ATCGGTGGCAACTCCAGAAA+TGG | - | chr4_4:73079013-73079032 | None:intergenic | 50.0% | |
AGTTGCCACCGATACTAGAG+CGG | + | chr4_4:73079020-73079039 | Msa0701650:CDS | 50.0% | |
! | GTTTACCGCTCTAGTATCGG+TGG | - | chr4_4:73079028-73079047 | None:intergenic | 50.0% |
GAGTTGGCCGGAATTGCAAT+TGG | + | chr4_4:73079140-73079159 | Msa0701650:CDS | 50.0% | |
! | CTGGTCCTAGAGTTCTAACC+GGG | - | chr4_4:73079379-73079398 | None:intergenic | 50.0% |
! | GCTGGTCCTAGAGTTCTAAC+CGG | - | chr4_4:73079380-73079399 | None:intergenic | 50.0% |
AGTGTTGTAGACCCATGCTC+CGG | - | chr4_4:73079468-73079487 | None:intergenic | 50.0% | |
! | CTTTGAGGAAGGATGCACTC+TGG | - | chr4_4:73079526-73079545 | None:intergenic | 50.0% |
GCATCCTTCCTCAAAGAAGC+TGG | + | chr4_4:73079530-73079549 | Msa0701650:CDS | 50.0% | |
CTCTGGGTGATCTCACGCAA+TGG | - | chr4_4:73079509-73079528 | None:intergenic | 55.0% | |
! | ACGCCCAGCTTCTTTGAGGA+AGG | - | chr4_4:73079537-73079556 | None:intergenic | 55.0% |
TTCCTCAAAGAAGCTGGGCG+TGG | + | chr4_4:73079536-73079555 | Msa0701650:CDS | 55.0% | |
TCAAAGAAGCTGGGCGTGGT+GGG | + | chr4_4:73079540-73079559 | Msa0701650:CDS | 55.0% | |
CACCACGCCCAGCTTCTTTG+AGG | - | chr4_4:73079541-73079560 | None:intergenic | 60.0% | |
CTCAAAGAAGCTGGGCGTGG+TGG | + | chr4_4:73079539-73079558 | Msa0701650:CDS | 60.0% | |
CCGGCGATGGCCCCCAAAAT+CGG | - | chr4_4:73079449-73079468 | None:intergenic | 65.0% | |
!! | CCGATTTTGGGGGCCATCGC+CGG | + | chr4_4:73079446-73079465 | Msa0701650:CDS | 65.0% |
GTAGACCCATGCTCCGGCGA+TGG | - | chr4_4:73079462-73079481 | None:intergenic | 65.0% | |
TGGGGGCCATCGCCGGAGCA+TGG | + | chr4_4:73079453-73079472 | Msa0701650:CDS | 75.0% | |
GGGGGCCATCGCCGGAGCAT+GGG | + | chr4_4:73079454-73079473 | Msa0701650:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 73076690 | 73080006 | 73076690 | ID=Msa0701650;Name=Msa0701650 |
chr4_4 | mRNA | 73076690 | 73080006 | 73076690 | ID=Msa0701650-mRNA-1;Parent=Msa0701650;Name=Msa0701650-mRNA-1;_AED=0.27;_eAED=0.27;_QI=84|1|1|1|1|1|5|429|276 |
chr4_4 | exon | 73076690 | 73076893 | 73076690 | ID=Msa0701650-mRNA-1:exon:22356;Parent=Msa0701650-mRNA-1 |
chr4_4 | exon | 73077009 | 73077233 | 73077009 | ID=Msa0701650-mRNA-1:exon:22357;Parent=Msa0701650-mRNA-1 |
chr4_4 | exon | 73078844 | 73079041 | 73078844 | ID=Msa0701650-mRNA-1:exon:22358;Parent=Msa0701650-mRNA-1 |
chr4_4 | exon | 73079134 | 73079195 | 73079134 | ID=Msa0701650-mRNA-1:exon:22359;Parent=Msa0701650-mRNA-1 |
chr4_4 | exon | 73079352 | 73080006 | 73079352 | ID=Msa0701650-mRNA-1:exon:22360;Parent=Msa0701650-mRNA-1 |
chr4_4 | five_prime_UTR | 73076690 | 73076773 | 73076690 | ID=Msa0701650-mRNA-1:five_prime_utr;Parent=Msa0701650-mRNA-1 |
chr4_4 | CDS | 73076774 | 73076893 | 73076774 | ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1 |
chr4_4 | CDS | 73077009 | 73077233 | 73077009 | ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1 |
chr4_4 | CDS | 73078844 | 73079041 | 73078844 | ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1 |
chr4_4 | CDS | 73079134 | 73079195 | 73079134 | ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1 |
chr4_4 | CDS | 73079352 | 73079577 | 73079352 | ID=Msa0701650-mRNA-1:cds;Parent=Msa0701650-mRNA-1 |
chr4_4 | three_prime_UTR | 73079578 | 73080006 | 73079578 | ID=Msa0701650-mRNA-1:three_prime_utr;Parent=Msa0701650-mRNA-1 |
Gene Sequence |
Protein sequence |