Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568320 | XP_024628119.1 | 94.493 | 454 | 25 | 0 | 1 | 454 | 1 | 454 | 0.0 | 886 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568320 | sp|Q6AVI0|RSLE2_ORYSJ | 30.415 | 434 | 293 | 4 | 34 | 459 | 173 | 605 | 3.16e-64 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568320 | A0A396GW00 | 94.493 | 454 | 25 | 0 | 1 | 454 | 1 | 454 | 0.0 | 886 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0568320 | Msa1032450 | 0.809622 | 1.727720e-50 | -8.615850e-47 |
| Msa0568320 | Msa1169990 | 0.816492 | 5.378624e-52 | -8.615850e-47 |
| Msa0568320 | Msa1201110 | 0.823557 | 1.299380e-53 | -8.615850e-47 |
| Msa0568320 | Msa1294290 | 0.803977 | 2.693890e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568320 | MtrunA17_Chr8g0383041 | 94.493 | 454 | 25 | 0 | 1 | 454 | 1 | 454 | 0.0 | 886 |
| Msa0568320 | MtrunA17_Chr8g0383081 | 72.467 | 454 | 113 | 1 | 1 | 454 | 10 | 451 | 0.0 | 656 |
| Msa0568320 | MtrunA17_Chr4g0052681 | 70.742 | 458 | 120 | 3 | 1 | 454 | 10 | 457 | 0.0 | 640 |
| Msa0568320 | MtrunA17_Chr8g0383071 | 75.704 | 284 | 68 | 1 | 87 | 369 | 27 | 310 | 5.87e-155 | 442 |
| Msa0568320 | MtrunA17_Chr8g0383051 | 67.732 | 313 | 89 | 3 | 1 | 311 | 23 | 325 | 4.66e-145 | 417 |
| Msa0568320 | MtrunA17_Chr8g0383211 | 35.111 | 450 | 259 | 10 | 22 | 448 | 95 | 534 | 1.23e-71 | 239 |
| Msa0568320 | MtrunA17_Chr2g0308821 | 27.845 | 413 | 283 | 5 | 15 | 420 | 117 | 521 | 1.89e-51 | 184 |
| Msa0568320 | MtrunA17_Chr7g0263231 | 29.855 | 345 | 238 | 3 | 79 | 421 | 591 | 933 | 2.70e-50 | 184 |
| Msa0568320 | MtrunA17_Chr8g0359341 | 30.024 | 423 | 285 | 4 | 34 | 454 | 190 | 603 | 3.78e-50 | 181 |
| Msa0568320 | MtrunA17_Chr2g0333261 | 27.506 | 389 | 277 | 4 | 34 | 420 | 151 | 536 | 9.88e-49 | 177 |
| Msa0568320 | MtrunA17_Chr8g0354631 | 30.055 | 366 | 244 | 5 | 31 | 386 | 161 | 524 | 9.94e-49 | 178 |
| Msa0568320 | MtrunA17_Chr7g0263261 | 28.462 | 390 | 275 | 4 | 34 | 421 | 487 | 874 | 1.15e-46 | 173 |
| Msa0568320 | MtrunA17_Chr4g0003151 | 25.564 | 399 | 294 | 3 | 26 | 422 | 124 | 521 | 3.43e-46 | 170 |
| Msa0568320 | MtrunA17_Chr8g0383091 | 75.758 | 99 | 24 | 0 | 355 | 453 | 1 | 99 | 1.17e-45 | 155 |
| Msa0568320 | MtrunA17_Chr5g0402891 | 26.897 | 435 | 297 | 10 | 31 | 449 | 46 | 475 | 2.43e-42 | 158 |
| Msa0568320 | MtrunA17_Chr4g0052601 | 31.529 | 314 | 204 | 5 | 29 | 334 | 112 | 422 | 1.50e-41 | 153 |
| Msa0568320 | MtrunA17_Chr1g0192041 | 42.604 | 169 | 97 | 0 | 258 | 426 | 62 | 230 | 7.14e-40 | 143 |
| Msa0568320 | MtrunA17_Chr8g0383061 | 70.000 | 100 | 26 | 1 | 355 | 454 | 1 | 96 | 4.43e-39 | 141 |
| Msa0568320 | MtrunA17_Chr4g0053391 | 46.721 | 122 | 65 | 0 | 305 | 426 | 1 | 122 | 2.93e-30 | 119 |
| Msa0568320 | MtrunA17_Chr8g0383181 | 32.381 | 210 | 111 | 8 | 26 | 213 | 90 | 290 | 5.40e-20 | 90.5 |
| Msa0568320 | MtrunA17_Chr4g0062411 | 24.277 | 346 | 236 | 10 | 54 | 385 | 167 | 500 | 5.18e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568320 | AT3G42170.2 | 32.362 | 343 | 228 | 4 | 79 | 419 | 193 | 533 | 3.27e-56 | 198 |
| Msa0568320 | AT3G42170.1 | 32.362 | 343 | 228 | 4 | 79 | 419 | 215 | 555 | 3.63e-56 | 198 |
| Msa0568320 | AT1G18560.1 | 22.857 | 350 | 242 | 12 | 52 | 385 | 160 | 497 | 9.21e-11 | 64.7 |
Find 70 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCAAGTTTGAGAAATAT+TGG | 0.264878 | 4_1:+69934668 | Msa0568320:CDS |
| AAGAGGGGTTGAAACTAGTT+AGG | 0.273312 | 4_1:+69934215 | Msa0568320:CDS |
| ATGTTGGCAGTTTCACTAAA+AGG | 0.284354 | 4_1:-69934520 | None:intergenic |
| CGATTGCGAGGTAGATTTAC+TGG | 0.296137 | 4_1:+69933613 | Msa0568320:CDS |
| TTGTTCCGTTCGCTCGCATC+TGG | 0.332909 | 4_1:+69934339 | Msa0568320:CDS |
| AAAGTTAAAGATATCCTATT+AGG | 0.333650 | 4_1:-69933869 | None:intergenic |
| AATATAAACTTACATCAAAT+AGG | 0.367162 | 4_1:-69934942 | None:intergenic |
| GACCAAGTTTGAGAAATATT+GGG | 0.380815 | 4_1:+69934669 | Msa0568320:CDS |
| TGTGAAGGGGAGTTCTTTCA+TGG | 0.389111 | 4_1:+69934157 | Msa0568320:CDS |
| TTGGAAGTGCTCTTAAATAT+CGG | 0.397896 | 4_1:+69934398 | Msa0568320:CDS |
| AAATAAAGCTCGACAACGTC+AGG | 0.406497 | 4_1:-69933791 | None:intergenic |
| TATAGTGTTGTTCTTGCATT+GGG | 0.413541 | 4_1:+69934697 | Msa0568320:CDS |
| AACTCAACTTATTCGATGCT+TGG | 0.413865 | 4_1:+69934379 | Msa0568320:CDS |
| AGCTGGCTACTATTCCTAAT+AGG | 0.414354 | 4_1:+69933855 | Msa0568320:CDS |
| CGTTGTCGAGCTTTATTTCG+AGG | 0.420845 | 4_1:+69933796 | Msa0568320:CDS |
| GAAATGGCATGCTAGAAGAT+TGG | 0.421269 | 4_1:-69934891 | None:intergenic |
| ATGTTGAAAGCTTTATCCTT+GGG | 0.435576 | 4_1:-69934732 | None:intergenic |
| TTCCCAATATTTCTCAAACT+TGG | 0.437013 | 4_1:-69934671 | None:intergenic |
| AATGTTGAAAGCTTTATCCT+TGG | 0.462069 | 4_1:-69934733 | None:intergenic |
| TGACGAGACAATGGAGCAAA+AGG | 0.464373 | 4_1:+69933643 | Msa0568320:CDS |
| TTGTTGCAACTTCCTTTCAC+AGG | 0.469521 | 4_1:-69934788 | None:intergenic |
| AGAGGGGTTGAAACTAGTTA+GGG | 0.478742 | 4_1:+69934216 | Msa0568320:CDS |
| TTTAAAACTGATCGTTGAAG+AGG | 0.483037 | 4_1:+69934198 | Msa0568320:CDS |
| TAGTTATGTGTTATGTCCTT+CGG | 0.484747 | 4_1:+69934453 | Msa0568320:CDS |
| GGATTGGAAGTTAAATAGTA+AGG | 0.495559 | 4_1:+69933955 | Msa0568320:CDS |
| GTATAGTGTTGTTCTTGCAT+TGG | 0.504977 | 4_1:+69934696 | Msa0568320:CDS |
| CAGTAAATCTACCTCGCAAT+CGG | 0.508390 | 4_1:-69933612 | None:intergenic |
| TTGCGTGCAAAGAACTATCC+AGG | 0.521949 | 4_1:+69934867 | Msa0568320:CDS |
| GCATGCTAGAAGATTGGTCC+TGG | 0.526977 | 4_1:-69934885 | None:intergenic |
| AGATGAAGATATAAAGAGAA+TGG | 0.531354 | 4_1:+69934633 | Msa0568320:CDS |
| AAGGATAAAGCTTTCAACAT+TGG | 0.531450 | 4_1:+69934735 | Msa0568320:CDS |
| ACTCAAGCTTAAACAACAGC+TGG | 0.537403 | 4_1:+69933838 | Msa0568320:CDS |
| ATCTGAGATGTGTGAGAGAA+TGG | 0.542652 | 4_1:+69934009 | Msa0568320:CDS |
| AGCTCGACAACGTCAGGAGG+AGG | 0.544628 | 4_1:-69933785 | None:intergenic |
| TGAGGCATTCAAAGAGTGGA+AGG | 0.553839 | 4_1:+69934275 | Msa0568320:CDS |
| TTAAAACTGATCGTTGAAGA+GGG | 0.555152 | 4_1:+69934199 | Msa0568320:CDS |
| AACAATCAACTAAAACACAT+TGG | 0.556867 | 4_1:-69934600 | None:intergenic |
| CTTGTCCAGATGCGAGCGAA+CGG | 0.559100 | 4_1:-69934344 | None:intergenic |
| GAAAGGAATAATCAGATGAA+AGG | 0.565099 | 4_1:-69933700 | None:intergenic |
| TTTGACAAGTATTCTAGCAA+AGG | 0.568207 | 4_1:+69934835 | Msa0568320:CDS |
| GTCGTACTCGCAATGACGAA+AGG | 0.572930 | 4_1:-69933717 | None:intergenic |
| ATATAAAGAGAATGGCTGAA+AGG | 0.574589 | 4_1:+69934641 | Msa0568320:CDS |
| TGTTGTTCTTGCATTGGGAG+CGG | 0.576416 | 4_1:+69934702 | Msa0568320:CDS |
| TTGATGCATCAACCTGTGAA+AGG | 0.579104 | 4_1:+69934776 | Msa0568320:CDS |
| AAGTTAAACTCTTTATCTGA+CGG | 0.582129 | 4_1:+69934919 | Msa0568320:CDS |
| CATAATGGGTTGTTATGTGA+AGG | 0.585885 | 4_1:+69934142 | Msa0568320:CDS |
| TGGGAGCGGTTCTTGACCCA+AGG | 0.586493 | 4_1:+69934716 | Msa0568320:CDS |
| AGCAATGTCACAAGAAAACA+TGG | 0.589116 | 4_1:+69933586 | None:intergenic |
| ATTTAAGGAGTGTATTGCAA+AGG | 0.590967 | 4_1:+69934303 | Msa0568320:CDS |
| GGACTCTGATGACGAGACAA+TGG | 0.591138 | 4_1:+69933634 | Msa0568320:CDS |
| GTGAAGGGGAGTTCTTTCAT+GGG | 0.592355 | 4_1:+69934158 | Msa0568320:CDS |
| CGACTCAATGAAGAACATCA+TGG | 0.597450 | 4_1:+69933736 | Msa0568320:CDS |
| TGTTGTGGCATTAATCATGT+TGG | 0.608401 | 4_1:-69934536 | None:intergenic |
| AAGGAGTGTATTGCAAAGGT+CGG | 0.609692 | 4_1:+69934307 | Msa0568320:CDS |
| TCTGTGAGGCATTCAAAGAG+TGG | 0.613100 | 4_1:+69934271 | Msa0568320:CDS |
| TAAAACTGATCGTTGAAGAG+GGG | 0.616012 | 4_1:+69934200 | Msa0568320:CDS |
| CAATGGAGCAAAAGGAATCA+CGG | 0.616222 | 4_1:+69933651 | Msa0568320:CDS |
| TATGTCCTTCGGTAGAAGAG+TGG | 0.619836 | 4_1:+69934464 | Msa0568320:CDS |
| ATAATGGGTTGTTATGTGAA+GGG | 0.641056 | 4_1:+69934143 | Msa0568320:CDS |
| CTCACACATCTCAGATACAG+TGG | 0.641388 | 4_1:-69934002 | None:intergenic |
| GAGTGTATTGCAAAGGTCGG+TGG | 0.641661 | 4_1:+69934310 | Msa0568320:CDS |
| TCACACATCTCAGATACAGT+GGG | 0.643868 | 4_1:-69934001 | None:intergenic |
| TAAAGCTCGACAACGTCAGG+AGG | 0.647506 | 4_1:-69933788 | None:intergenic |
| AAACATGGAATCCGATTGCG+AGG | 0.651065 | 4_1:+69933601 | Msa0568320:CDS |
| TAATGGGTTGTTATGTGAAG+GGG | 0.655207 | 4_1:+69934144 | Msa0568320:CDS |
| CAATGAAGAACATCATGGAG+TGG | 0.659903 | 4_1:+69933741 | Msa0568320:CDS |
| GAGGCATTCAAAGAGTGGAA+GGG | 0.668998 | 4_1:+69934276 | Msa0568320:CDS |
| ATCCGCGTCAACAAAATGAG+CGG | 0.685884 | 4_1:-69933936 | None:intergenic |
| GAGATAGCATCATGTCTGTG+AGG | 0.694771 | 4_1:+69934257 | Msa0568320:CDS |
| GTTGGAAGTAGGATGTGTTG+TGG | 0.714476 | 4_1:-69934551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAACTTACATCAAAT+AGG | - | chr4_1:69934945-69934964 | None:intergenic | 15.0% |
| !! | AATATAAACTTACATCAAAT+AGG | - | chr4_1:69934945-69934964 | None:intergenic | 15.0% |
| !! | AAAGTTAAAGATATCCTATT+AGG | - | chr4_1:69933872-69933891 | None:intergenic | 20.0% |
| !! | AAAGTTAAAGATATCCTATT+AGG | - | chr4_1:69933872-69933891 | None:intergenic | 20.0% |
| !!! | TATCTTTAACTTTTGATCTG+TGG | + | chr4_1:69933879-69933898 | Msa0568320:CDS | 25.0% |
| !!! | ATCTTTAACTTTTGATCTGT+GGG | + | chr4_1:69933880-69933899 | Msa0568320:CDS | 25.0% |
| !!! | AATCAACTTGTTTTGCATAA+TGG | + | chr4_1:69934127-69934146 | Msa0568320:CDS | 25.0% |
| !!! | ATCAACTTGTTTTGCATAAT+GGG | + | chr4_1:69934128-69934147 | Msa0568320:CDS | 25.0% |
| !! | AAAAAATACAAGTTGGAAGT+AGG | - | chr4_1:69934565-69934584 | None:intergenic | 25.0% |
| ! | AACTTGCAAAAAATACAAGT+TGG | - | chr4_1:69934572-69934591 | None:intergenic | 25.0% |
| !!! | ACTTGTATTTTTTGCAAGTT+TGG | + | chr4_1:69934572-69934591 | Msa0568320:CDS | 25.0% |
| ! | AACAATCAACTAAAACACAT+TGG | - | chr4_1:69934603-69934622 | None:intergenic | 25.0% |
| !!! | ATGTGTTTTAGTTGATTGTT+TGG | + | chr4_1:69934603-69934622 | Msa0568320:CDS | 25.0% |
| !!! | TGTGTTTTAGTTGATTGTTT+GGG | + | chr4_1:69934604-69934623 | Msa0568320:CDS | 25.0% |
| ! | AGATGAAGATATAAAGAGAA+TGG | + | chr4_1:69934633-69934652 | Msa0568320:CDS | 25.0% |
| !!! | GAGTTTAACTTCTTTTGAAA+TGG | - | chr4_1:69934910-69934929 | None:intergenic | 25.0% |
| ! | AAGTTAAACTCTTTATCTGA+CGG | + | chr4_1:69934919-69934938 | Msa0568320:CDS | 25.0% |
| !!! | TATCTTTAACTTTTGATCTG+TGG | + | chr4_1:69933879-69933898 | Msa0568320:CDS | 25.0% |
| !!! | ATCTTTAACTTTTGATCTGT+GGG | + | chr4_1:69933880-69933899 | Msa0568320:CDS | 25.0% |
| !!! | AATCAACTTGTTTTGCATAA+TGG | + | chr4_1:69934127-69934146 | Msa0568320:CDS | 25.0% |
| !!! | ATCAACTTGTTTTGCATAAT+GGG | + | chr4_1:69934128-69934147 | Msa0568320:CDS | 25.0% |
| !! | AAAAAATACAAGTTGGAAGT+AGG | - | chr4_1:69934565-69934584 | None:intergenic | 25.0% |
| ! | AACTTGCAAAAAATACAAGT+TGG | - | chr4_1:69934572-69934591 | None:intergenic | 25.0% |
| !!! | ACTTGTATTTTTTGCAAGTT+TGG | + | chr4_1:69934572-69934591 | Msa0568320:CDS | 25.0% |
| ! | AACAATCAACTAAAACACAT+TGG | - | chr4_1:69934603-69934622 | None:intergenic | 25.0% |
| !!! | ATGTGTTTTAGTTGATTGTT+TGG | + | chr4_1:69934603-69934622 | Msa0568320:CDS | 25.0% |
| !!! | TGTGTTTTAGTTGATTGTTT+GGG | + | chr4_1:69934604-69934623 | Msa0568320:CDS | 25.0% |
| ! | AGATGAAGATATAAAGAGAA+TGG | + | chr4_1:69934633-69934652 | Msa0568320:CDS | 25.0% |
| !!! | GAGTTTAACTTCTTTTGAAA+TGG | - | chr4_1:69934910-69934929 | None:intergenic | 25.0% |
| ! | AAGTTAAACTCTTTATCTGA+CGG | + | chr4_1:69934919-69934938 | Msa0568320:CDS | 25.0% |
| AGTAAAAACTTGTGCTTCTA+TGG | + | chr4_1:69933676-69933695 | Msa0568320:CDS | 30.0% | |
| GAAAGGAATAATCAGATGAA+AGG | - | chr4_1:69933703-69933722 | None:intergenic | 30.0% | |
| GGATTGGAAGTTAAATAGTA+AGG | + | chr4_1:69933955-69933974 | Msa0568320:CDS | 30.0% | |
| ! | TGGTTGAGTTTTTGAATGAT+TGG | + | chr4_1:69934029-69934048 | Msa0568320:CDS | 30.0% |
| ! | GGTTGAGTTTTTGAATGATT+GGG | + | chr4_1:69934030-69934049 | Msa0568320:CDS | 30.0% |
| ! | GTTGAGTTTTTGAATGATTG+GGG | + | chr4_1:69934031-69934050 | Msa0568320:CDS | 30.0% |
| !! | ATAATGGGTTGTTATGTGAA+GGG | + | chr4_1:69934143-69934162 | Msa0568320:CDS | 30.0% |
| ! | TTTAAAACTGATCGTTGAAG+AGG | + | chr4_1:69934198-69934217 | Msa0568320:CDS | 30.0% |
| TTAAAACTGATCGTTGAAGA+GGG | + | chr4_1:69934199-69934218 | Msa0568320:CDS | 30.0% | |
| ! | ATTTAAGGAGTGTATTGCAA+AGG | + | chr4_1:69934303-69934322 | Msa0568320:CDS | 30.0% |
| !! | TTGGAAGTGCTCTTAAATAT+CGG | + | chr4_1:69934398-69934417 | Msa0568320:CDS | 30.0% |
| TAGTTATGTGTTATGTCCTT+CGG | + | chr4_1:69934453-69934472 | Msa0568320:CDS | 30.0% | |
| ATATAAAGAGAATGGCTGAA+AGG | + | chr4_1:69934641-69934660 | Msa0568320:CDS | 30.0% | |
| TGACCAAGTTTGAGAAATAT+TGG | + | chr4_1:69934668-69934687 | Msa0568320:CDS | 30.0% | |
| GACCAAGTTTGAGAAATATT+GGG | + | chr4_1:69934669-69934688 | Msa0568320:CDS | 30.0% | |
| TTCCCAATATTTCTCAAACT+TGG | - | chr4_1:69934674-69934693 | None:intergenic | 30.0% | |
| ! | TATAGTGTTGTTCTTGCATT+GGG | + | chr4_1:69934697-69934716 | Msa0568320:CDS | 30.0% |
| ! | ATGTTGAAAGCTTTATCCTT+GGG | - | chr4_1:69934735-69934754 | None:intergenic | 30.0% |
| ! | AATGTTGAAAGCTTTATCCT+TGG | - | chr4_1:69934736-69934755 | None:intergenic | 30.0% |
| AAGGATAAAGCTTTCAACAT+TGG | + | chr4_1:69934735-69934754 | Msa0568320:CDS | 30.0% | |
| TTTGACAAGTATTCTAGCAA+AGG | + | chr4_1:69934835-69934854 | Msa0568320:CDS | 30.0% | |
| AGTAAAAACTTGTGCTTCTA+TGG | + | chr4_1:69933676-69933695 | Msa0568320:CDS | 30.0% | |
| GAAAGGAATAATCAGATGAA+AGG | - | chr4_1:69933703-69933722 | None:intergenic | 30.0% | |
| GGATTGGAAGTTAAATAGTA+AGG | + | chr4_1:69933955-69933974 | Msa0568320:CDS | 30.0% | |
| ! | TGGTTGAGTTTTTGAATGAT+TGG | + | chr4_1:69934029-69934048 | Msa0568320:CDS | 30.0% |
| ! | GGTTGAGTTTTTGAATGATT+GGG | + | chr4_1:69934030-69934049 | Msa0568320:CDS | 30.0% |
| ! | GTTGAGTTTTTGAATGATTG+GGG | + | chr4_1:69934031-69934050 | Msa0568320:CDS | 30.0% |
| !! | ATAATGGGTTGTTATGTGAA+GGG | + | chr4_1:69934143-69934162 | Msa0568320:CDS | 30.0% |
| ! | TTTAAAACTGATCGTTGAAG+AGG | + | chr4_1:69934198-69934217 | Msa0568320:CDS | 30.0% |
| TTAAAACTGATCGTTGAAGA+GGG | + | chr4_1:69934199-69934218 | Msa0568320:CDS | 30.0% | |
| ! | ATTTAAGGAGTGTATTGCAA+AGG | + | chr4_1:69934303-69934322 | Msa0568320:CDS | 30.0% |
| !! | TTGGAAGTGCTCTTAAATAT+CGG | + | chr4_1:69934398-69934417 | Msa0568320:CDS | 30.0% |
| TAGTTATGTGTTATGTCCTT+CGG | + | chr4_1:69934453-69934472 | Msa0568320:CDS | 30.0% | |
| ATATAAAGAGAATGGCTGAA+AGG | + | chr4_1:69934641-69934660 | Msa0568320:CDS | 30.0% | |
| TGACCAAGTTTGAGAAATAT+TGG | + | chr4_1:69934668-69934687 | Msa0568320:CDS | 30.0% | |
| GACCAAGTTTGAGAAATATT+GGG | + | chr4_1:69934669-69934688 | Msa0568320:CDS | 30.0% | |
| TTCCCAATATTTCTCAAACT+TGG | - | chr4_1:69934674-69934693 | None:intergenic | 30.0% | |
| ! | TATAGTGTTGTTCTTGCATT+GGG | + | chr4_1:69934697-69934716 | Msa0568320:CDS | 30.0% |
| ! | ATGTTGAAAGCTTTATCCTT+GGG | - | chr4_1:69934735-69934754 | None:intergenic | 30.0% |
| ! | AATGTTGAAAGCTTTATCCT+TGG | - | chr4_1:69934736-69934755 | None:intergenic | 30.0% |
| AAGGATAAAGCTTTCAACAT+TGG | + | chr4_1:69934735-69934754 | Msa0568320:CDS | 30.0% | |
| TTTGACAAGTATTCTAGCAA+AGG | + | chr4_1:69934835-69934854 | Msa0568320:CDS | 30.0% | |
| ! | GATTTTCTCTCTCACTTTAG+AGG | + | chr4_1:69934066-69934085 | Msa0568320:CDS | 35.0% |
| !! | CATAATGGGTTGTTATGTGA+AGG | + | chr4_1:69934142-69934161 | Msa0568320:CDS | 35.0% |
| !! | TAATGGGTTGTTATGTGAAG+GGG | + | chr4_1:69934144-69934163 | Msa0568320:CDS | 35.0% |
| TAAAACTGATCGTTGAAGAG+GGG | + | chr4_1:69934200-69934219 | Msa0568320:CDS | 35.0% | |
| GAGTGGAAGGGAAAAATTTA+AGG | + | chr4_1:69934288-69934307 | Msa0568320:CDS | 35.0% | |
| AACTCAACTTATTCGATGCT+TGG | + | chr4_1:69934379-69934398 | Msa0568320:CDS | 35.0% | |
| ATGTTGGCAGTTTCACTAAA+AGG | - | chr4_1:69934523-69934542 | None:intergenic | 35.0% | |
| TGTTGTGGCATTAATCATGT+TGG | - | chr4_1:69934539-69934558 | None:intergenic | 35.0% | |
| ! | GTATAGTGTTGTTCTTGCAT+TGG | + | chr4_1:69934696-69934715 | Msa0568320:CDS | 35.0% |
| ! | GATTTTCTCTCTCACTTTAG+AGG | + | chr4_1:69934066-69934085 | Msa0568320:CDS | 35.0% |
| !! | CATAATGGGTTGTTATGTGA+AGG | + | chr4_1:69934142-69934161 | Msa0568320:CDS | 35.0% |
| !! | TAATGGGTTGTTATGTGAAG+GGG | + | chr4_1:69934144-69934163 | Msa0568320:CDS | 35.0% |
| TAAAACTGATCGTTGAAGAG+GGG | + | chr4_1:69934200-69934219 | Msa0568320:CDS | 35.0% | |
| GAGTGGAAGGGAAAAATTTA+AGG | + | chr4_1:69934288-69934307 | Msa0568320:CDS | 35.0% | |
| AACTCAACTTATTCGATGCT+TGG | + | chr4_1:69934379-69934398 | Msa0568320:CDS | 35.0% | |
| ATGTTGGCAGTTTCACTAAA+AGG | - | chr4_1:69934523-69934542 | None:intergenic | 35.0% | |
| TGTTGTGGCATTAATCATGT+TGG | - | chr4_1:69934539-69934558 | None:intergenic | 35.0% | |
| ! | GTATAGTGTTGTTCTTGCAT+TGG | + | chr4_1:69934696-69934715 | Msa0568320:CDS | 35.0% |
| CAGTAAATCTACCTCGCAAT+CGG | - | chr4_1:69933615-69933634 | None:intergenic | 40.0% | |
| CAATGGAGCAAAAGGAATCA+CGG | + | chr4_1:69933651-69933670 | Msa0568320:CDS | 40.0% | |
| CGACTCAATGAAGAACATCA+TGG | + | chr4_1:69933736-69933755 | Msa0568320:CDS | 40.0% | |
| CAATGAAGAACATCATGGAG+TGG | + | chr4_1:69933741-69933760 | Msa0568320:CDS | 40.0% | |
| AAATAAAGCTCGACAACGTC+AGG | - | chr4_1:69933794-69933813 | None:intergenic | 40.0% | |
| ACTCAAGCTTAAACAACAGC+TGG | + | chr4_1:69933838-69933857 | Msa0568320:CDS | 40.0% | |
| AGCTGGCTACTATTCCTAAT+AGG | + | chr4_1:69933855-69933874 | Msa0568320:CDS | 40.0% | |
| TCACACATCTCAGATACAGT+GGG | - | chr4_1:69934004-69934023 | None:intergenic | 40.0% | |
| ! | ATCTGAGATGTGTGAGAGAA+TGG | + | chr4_1:69934009-69934028 | Msa0568320:CDS | 40.0% |
| AAGAGGGGTTGAAACTAGTT+AGG | + | chr4_1:69934215-69934234 | Msa0568320:CDS | 40.0% | |
| AGAGGGGTTGAAACTAGTTA+GGG | + | chr4_1:69934216-69934235 | Msa0568320:CDS | 40.0% | |
| ! | AAGGAGTGTATTGCAAAGGT+CGG | + | chr4_1:69934307-69934326 | Msa0568320:CDS | 40.0% |
| TTGATGCATCAACCTGTGAA+AGG | + | chr4_1:69934776-69934795 | Msa0568320:CDS | 40.0% | |
| TTGTTGCAACTTCCTTTCAC+AGG | - | chr4_1:69934791-69934810 | None:intergenic | 40.0% | |
| GAAATGGCATGCTAGAAGAT+TGG | - | chr4_1:69934894-69934913 | None:intergenic | 40.0% | |
| CAGTAAATCTACCTCGCAAT+CGG | - | chr4_1:69933615-69933634 | None:intergenic | 40.0% | |
| CAATGGAGCAAAAGGAATCA+CGG | + | chr4_1:69933651-69933670 | Msa0568320:CDS | 40.0% | |
| CGACTCAATGAAGAACATCA+TGG | + | chr4_1:69933736-69933755 | Msa0568320:CDS | 40.0% | |
| CAATGAAGAACATCATGGAG+TGG | + | chr4_1:69933741-69933760 | Msa0568320:CDS | 40.0% | |
| AAATAAAGCTCGACAACGTC+AGG | - | chr4_1:69933794-69933813 | None:intergenic | 40.0% | |
| ACTCAAGCTTAAACAACAGC+TGG | + | chr4_1:69933838-69933857 | Msa0568320:CDS | 40.0% | |
| AGCTGGCTACTATTCCTAAT+AGG | + | chr4_1:69933855-69933874 | Msa0568320:CDS | 40.0% | |
| TCACACATCTCAGATACAGT+GGG | - | chr4_1:69934004-69934023 | None:intergenic | 40.0% | |
| ! | ATCTGAGATGTGTGAGAGAA+TGG | + | chr4_1:69934009-69934028 | Msa0568320:CDS | 40.0% |
| AAGAGGGGTTGAAACTAGTT+AGG | + | chr4_1:69934215-69934234 | Msa0568320:CDS | 40.0% | |
| AGAGGGGTTGAAACTAGTTA+GGG | + | chr4_1:69934216-69934235 | Msa0568320:CDS | 40.0% | |
| ! | AAGGAGTGTATTGCAAAGGT+CGG | + | chr4_1:69934307-69934326 | Msa0568320:CDS | 40.0% |
| TTGATGCATCAACCTGTGAA+AGG | + | chr4_1:69934776-69934795 | Msa0568320:CDS | 40.0% | |
| TTGTTGCAACTTCCTTTCAC+AGG | - | chr4_1:69934791-69934810 | None:intergenic | 40.0% | |
| GAAATGGCATGCTAGAAGAT+TGG | - | chr4_1:69934894-69934913 | None:intergenic | 40.0% | |
| AAACATGGAATCCGATTGCG+AGG | + | chr4_1:69933601-69933620 | Msa0568320:CDS | 45.0% | |
| CGATTGCGAGGTAGATTTAC+TGG | + | chr4_1:69933613-69933632 | Msa0568320:CDS | 45.0% | |
| TGACGAGACAATGGAGCAAA+AGG | + | chr4_1:69933643-69933662 | Msa0568320:CDS | 45.0% | |
| !! | CGTTGTCGAGCTTTATTTCG+AGG | + | chr4_1:69933796-69933815 | Msa0568320:CDS | 45.0% |
| ATCCGCGTCAACAAAATGAG+CGG | - | chr4_1:69933939-69933958 | None:intergenic | 45.0% | |
| ! | CTCATTTTGTTGACGCGGAT+TGG | + | chr4_1:69933939-69933958 | Msa0568320:CDS | 45.0% |
| CTCACACATCTCAGATACAG+TGG | - | chr4_1:69934005-69934024 | None:intergenic | 45.0% | |
| TGTGAAGGGGAGTTCTTTCA+TGG | + | chr4_1:69934157-69934176 | Msa0568320:CDS | 45.0% | |
| GTGAAGGGGAGTTCTTTCAT+GGG | + | chr4_1:69934158-69934177 | Msa0568320:CDS | 45.0% | |
| GAGATAGCATCATGTCTGTG+AGG | + | chr4_1:69934257-69934276 | Msa0568320:CDS | 45.0% | |
| ! | TCTGTGAGGCATTCAAAGAG+TGG | + | chr4_1:69934271-69934290 | Msa0568320:CDS | 45.0% |
| ! | TGAGGCATTCAAAGAGTGGA+AGG | + | chr4_1:69934275-69934294 | Msa0568320:CDS | 45.0% |
| ! | GAGGCATTCAAAGAGTGGAA+GGG | + | chr4_1:69934276-69934295 | Msa0568320:CDS | 45.0% |
| TATGTCCTTCGGTAGAAGAG+TGG | + | chr4_1:69934464-69934483 | Msa0568320:CDS | 45.0% | |
| ! | CTTTTCCACTCTTCTACCGA+AGG | - | chr4_1:69934472-69934491 | None:intergenic | 45.0% |
| GTTGGAAGTAGGATGTGTTG+TGG | - | chr4_1:69934554-69934573 | None:intergenic | 45.0% | |
| TGTTGTTCTTGCATTGGGAG+CGG | + | chr4_1:69934702-69934721 | Msa0568320:CDS | 45.0% | |
| TTGCGTGCAAAGAACTATCC+AGG | + | chr4_1:69934867-69934886 | Msa0568320:CDS | 45.0% | |
| AAACATGGAATCCGATTGCG+AGG | + | chr4_1:69933601-69933620 | Msa0568320:CDS | 45.0% | |
| CGATTGCGAGGTAGATTTAC+TGG | + | chr4_1:69933613-69933632 | Msa0568320:CDS | 45.0% | |
| TGACGAGACAATGGAGCAAA+AGG | + | chr4_1:69933643-69933662 | Msa0568320:CDS | 45.0% | |
| !! | CGTTGTCGAGCTTTATTTCG+AGG | + | chr4_1:69933796-69933815 | Msa0568320:CDS | 45.0% |
| ATCCGCGTCAACAAAATGAG+CGG | - | chr4_1:69933939-69933958 | None:intergenic | 45.0% | |
| ! | CTCATTTTGTTGACGCGGAT+TGG | + | chr4_1:69933939-69933958 | Msa0568320:CDS | 45.0% |
| CTCACACATCTCAGATACAG+TGG | - | chr4_1:69934005-69934024 | None:intergenic | 45.0% | |
| TGTGAAGGGGAGTTCTTTCA+TGG | + | chr4_1:69934157-69934176 | Msa0568320:CDS | 45.0% | |
| GTGAAGGGGAGTTCTTTCAT+GGG | + | chr4_1:69934158-69934177 | Msa0568320:CDS | 45.0% | |
| GAGATAGCATCATGTCTGTG+AGG | + | chr4_1:69934257-69934276 | Msa0568320:CDS | 45.0% | |
| ! | TCTGTGAGGCATTCAAAGAG+TGG | + | chr4_1:69934271-69934290 | Msa0568320:CDS | 45.0% |
| ! | TGAGGCATTCAAAGAGTGGA+AGG | + | chr4_1:69934275-69934294 | Msa0568320:CDS | 45.0% |
| ! | GAGGCATTCAAAGAGTGGAA+GGG | + | chr4_1:69934276-69934295 | Msa0568320:CDS | 45.0% |
| TATGTCCTTCGGTAGAAGAG+TGG | + | chr4_1:69934464-69934483 | Msa0568320:CDS | 45.0% | |
| ! | CTTTTCCACTCTTCTACCGA+AGG | - | chr4_1:69934472-69934491 | None:intergenic | 45.0% |
| GTTGGAAGTAGGATGTGTTG+TGG | - | chr4_1:69934554-69934573 | None:intergenic | 45.0% | |
| TGTTGTTCTTGCATTGGGAG+CGG | + | chr4_1:69934702-69934721 | Msa0568320:CDS | 45.0% | |
| TTGCGTGCAAAGAACTATCC+AGG | + | chr4_1:69934867-69934886 | Msa0568320:CDS | 45.0% | |
| ! | GGACTCTGATGACGAGACAA+TGG | + | chr4_1:69933634-69933653 | Msa0568320:CDS | 50.0% |
| GTCGTACTCGCAATGACGAA+AGG | - | chr4_1:69933720-69933739 | None:intergenic | 50.0% | |
| TAAAGCTCGACAACGTCAGG+AGG | - | chr4_1:69933791-69933810 | None:intergenic | 50.0% | |
| ! | GACCGCTCATTTTGTTGACG+CGG | + | chr4_1:69933934-69933953 | Msa0568320:CDS | 50.0% |
| GAGTGTATTGCAAAGGTCGG+TGG | + | chr4_1:69934310-69934329 | Msa0568320:CDS | 50.0% | |
| ! | GCATGCTAGAAGATTGGTCC+TGG | - | chr4_1:69934888-69934907 | None:intergenic | 50.0% |
| ! | GGACTCTGATGACGAGACAA+TGG | + | chr4_1:69933634-69933653 | Msa0568320:CDS | 50.0% |
| GTCGTACTCGCAATGACGAA+AGG | - | chr4_1:69933720-69933739 | None:intergenic | 50.0% | |
| TAAAGCTCGACAACGTCAGG+AGG | - | chr4_1:69933791-69933810 | None:intergenic | 50.0% | |
| ! | GACCGCTCATTTTGTTGACG+CGG | + | chr4_1:69933934-69933953 | Msa0568320:CDS | 50.0% |
| GAGTGTATTGCAAAGGTCGG+TGG | + | chr4_1:69934310-69934329 | Msa0568320:CDS | 50.0% | |
| ! | GCATGCTAGAAGATTGGTCC+TGG | - | chr4_1:69934888-69934907 | None:intergenic | 50.0% |
| TTGTTCCGTTCGCTCGCATC+TGG | + | chr4_1:69934339-69934358 | Msa0568320:CDS | 55.0% | |
| CTTGTCCAGATGCGAGCGAA+CGG | - | chr4_1:69934347-69934366 | None:intergenic | 55.0% | |
| TTGTTCCGTTCGCTCGCATC+TGG | + | chr4_1:69934339-69934358 | Msa0568320:CDS | 55.0% | |
| CTTGTCCAGATGCGAGCGAA+CGG | - | chr4_1:69934347-69934366 | None:intergenic | 55.0% | |
| AGCTCGACAACGTCAGGAGG+AGG | - | chr4_1:69933788-69933807 | None:intergenic | 60.0% | |
| TGGGAGCGGTTCTTGACCCA+AGG | + | chr4_1:69934716-69934735 | Msa0568320:CDS | 60.0% | |
| AGCTCGACAACGTCAGGAGG+AGG | - | chr4_1:69933788-69933807 | None:intergenic | 60.0% | |
| TGGGAGCGGTTCTTGACCCA+AGG | + | chr4_1:69934716-69934735 | Msa0568320:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69933590 | 69934975 | 69933590 | ID=Msa0568320;Name=Msa0568320 |
| chr4_1 | mRNA | 69933590 | 69934975 | 69933590 | ID=Msa0568320-mRNA-1;Parent=Msa0568320;Name=Msa0568320-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|461 |
| chr4_1 | exon | 69933590 | 69934975 | 69933590 | ID=Msa0568320-mRNA-1:exon:23451;Parent=Msa0568320-mRNA-1 |
| chr4_1 | CDS | 69933590 | 69934975 | 69933590 | ID=Msa0568320-mRNA-1:cds;Parent=Msa0568320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
