AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032450 MtrunA17_Chr7g0254521 74.060 266 63 1 4 263 2 267 4.59e-139 400
Msa1032450 MtrunA17_Chr7g0254511 69.057 265 77 2 3 263 2 265 7.24e-128 371
Msa1032450 MtrunA17_Chr6g0460531 64.151 265 90 3 1 264 1 261 5.92e-117 335
Msa1032450 MtrunA17_Chr7g0254531 96.629 178 6 0 86 263 1 178 8.23e-117 340
Msa1032450 MtrunA17_Chr6g0460541 69.444 180 54 1 84 263 3 181 4.15e-81 249
Msa1032450 MtrunA17_Chr5g0412541 47.951 244 127 0 20 263 29 272 3.68e-75 236
Msa1032450 MtrunA17_Chr3g0132541 43.580 257 144 1 7 263 22 277 5.30e-73 229
Msa1032450 MtrunA17_Chr3g0132531 44.322 273 141 1 2 263 10 282 4.78e-69 221
Msa1032450 MtrunA17_Chr8g0368001 41.803 244 142 0 20 263 43 286 4.61e-65 211
Msa1032450 MtrunA17_Chr1g0202761 44.492 236 130 1 28 263 44 278 1.28e-62 204
Msa1032450 MtrunA17_Chr5g0412771 40.467 257 150 1 7 263 39 292 2.34e-57 191
Msa1032450 MtrunA17_Chr2g0322671 39.773 264 157 2 2 263 26 289 9.29e-55 184
Msa1032450 MtrunA17_Chr4g0024501 40.152 264 156 2 2 263 38 301 5.51e-54 182
Msa1032450 MtrunA17_Chr7g0254491 71.304 115 29 1 3 113 2 116 1.23e-53 169
Msa1032450 MtrunA17_Chr6g0468531 36.742 264 155 4 2 263 13 266 2.98e-49 169
Msa1032450 MtrunA17_Chr7g0248051 41.525 236 137 1 28 263 71 305 3.67e-47 164
Msa1032450 MtrunA17_Chr1g0154441 46.629 178 95 0 86 263 1 178 7.19e-47 160
Msa1032450 MtrunA17_Chr5g0412571 47.895 190 93 3 79 263 29 217 2.61e-46 160
Msa1032450 MtrunA17_Chr6g0468521 34.733 262 162 3 2 263 13 265 1.11e-43 154
Msa1032450 MtrunA17_Chr6g0468511 33.588 262 165 3 2 263 13 265 1.42e-43 154
Msa1032450 MtrunA17_Chr2g0288281 43.017 179 101 1 86 263 1 179 4.50e-41 145
Msa1032450 MtrunA17_Chr1g0208791 36.975 238 149 1 27 263 43 280 6.56e-40 144
Msa1032450 MtrunA17_Chr8g0364761 34.599 237 154 1 28 263 54 290 1.72e-38 137
Msa1032450 MtrunA17_Chr7g0254501 72.043 93 25 1 171 263 2 93 5.86e-38 135
Msa1032450 MtrunA17_Chr5g0442331 38.397 237 145 1 28 263 47 283 3.18e-36 134
Msa1032450 MtrunA17_Chr6g0483381 34.221 263 162 6 6 263 10 266 3.92e-35 131
Msa1032450 MtrunA17_Chr6g0477961 37.190 242 138 8 30 263 31 266 7.78e-34 127
Msa1032450 MtrunA17_Chr6g0483361 34.496 258 154 7 13 263 15 264 2.52e-33 126
Msa1032450 MtrunA17_Chr6g0483241 39.459 185 105 5 84 264 1 182 6.06e-31 113
Msa1032450 MtrunA17_Chr2g0317171 33.835 266 163 4 6 263 14 274 1.10e-29 116
Msa1032450 MtrunA17_Chr6g0483331 33.061 245 158 4 23 263 8 250 1.44e-29 115
Msa1032450 MtrunA17_Chr6g0483161 39.344 183 106 3 84 263 1 181 3.43e-28 110
Msa1032450 MtrunA17_Chr2g0317161 33.074 257 163 3 15 263 13 268 4.53e-28 112
Msa1032450 MtrunA17_Chr2g0317131 30.712 267 171 4 5 263 20 280 5.84e-28 111
Msa1032450 MtrunA17_Chr8g0392601 32.432 259 159 5 11 263 1 249 6.63e-28 111
Msa1032450 MtrunA17_Chr1g0208821 30.943 265 172 5 6 263 18 278 1.21e-26 107
Msa1032450 MtrunA17_Chr2g0317151 29.368 269 177 4 2 263 8 270 1.64e-26 107
Msa1032450 MtrunA17_Chr3g0140931 30.172 232 149 5 4 230 27 250 5.19e-26 106
Msa1032450 MtrunA17_Chr6g0483351 37.017 181 111 2 86 263 1 181 6.92e-26 105
Msa1032450 MtrunA17_Chr6g0483341 30.038 263 172 7 7 263 23 279 7.49e-26 105
Msa1032450 MtrunA17_Chr6g0460551 64.557 79 26 2 7 83 15 93 9.79e-26 97.8
Msa1032450 MtrunA17_Chr6g0449061 29.528 254 169 4 13 262 20 267 1.13e-24 102
Msa1032450 MtrunA17_Chr7g0251331 31.298 262 171 2 11 263 2 263 1.49e-24 102
Msa1032450 MtrunA17_Chr5g0442311 35.714 182 112 3 86 264 1 180 4.85e-24 95.5
Msa1032450 MtrunA17_Chr5g0440661 35.294 170 109 1 86 254 1 170 1.16e-23 97.4
Msa1032450 MtrunA17_Chr1g0208891 32.870 216 142 1 8 220 2 217 6.92e-23 97.1
Msa1032450 MtrunA17_Chr1g0208881 32.273 220 145 1 8 223 2 221 3.24e-21 92.4
Msa1032450 MtrunA17_Chr6g0473701 30.165 242 154 5 26 259 127 361 5.30e-21 92.0
Msa1032450 MtrunA17_Chr2g0317221 34.973 183 116 2 83 263 7 188 5.70e-21 91.3
Msa1032450 MtrunA17_Chr5g0397991 30.769 208 132 4 7 209 47 247 3.54e-20 89.7
Msa1032450 MtrunA17_Chr1g0203791 31.197 234 136 4 22 242 59 280 4.09e-20 89.4
Msa1032450 MtrunA17_Chr5g0428251 28.085 235 151 6 6 230 28 254 6.39e-20 89.0
Msa1032450 MtrunA17_Chr6g0467321 29.319 191 130 3 27 214 42 230 2.92e-17 80.9
Msa1032450 MtrunA17_Chr7g0251321 32.584 178 119 1 86 262 1 178 6.87e-17 79.3
Msa1032450 MtrunA17_Chr4g0013031 28.365 208 149 0 22 229 61 268 2.71e-16 78.2
Msa1032450 MtrunA17_Chr5g0412561 44.000 75 41 1 9 83 19 92 8.94e-16 70.9
Msa1032450 MtrunA17_Chr1g0154451 37.349 83 52 0 2 84 10 92 1.49e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032450 AT1G33110.2 63.600 250 91 0 14 263 22 271 1.56e-113 332
Msa1032450 AT1G33110.1 63.600 250 91 0 14 263 22 271 6.26e-112 331
Msa1032450 AT1G33100.1 60.784 255 100 0 9 263 14 268 3.70e-110 327
Msa1032450 AT1G33080.1 60.800 250 98 0 14 263 22 271 1.42e-108 323
Msa1032450 AT1G33080.2 60.800 250 98 0 14 263 22 271 1.54e-108 322
Msa1032450 AT1G33090.1 60.400 250 99 0 14 263 22 271 2.93e-107 319
Msa1032450 AT5G65380.1 50.201 249 124 0 15 263 24 272 5.48e-74 234
Msa1032450 AT5G44050.1 45.382 249 136 0 15 263 27 275 7.95e-72 228
Msa1032450 AT5G17700.3 40.602 266 153 1 3 263 4 269 1.36e-69 220
Msa1032450 AT5G17700.2 40.602 266 153 1 3 263 4 269 1.28e-68 220
Msa1032450 AT5G17700.1 40.602 266 153 1 3 263 4 269 1.28e-68 220
Msa1032450 AT5G10420.1 45.136 257 141 0 7 263 17 273 1.82e-67 217
Msa1032450 AT1G47530.1 44.403 268 140 3 5 263 3 270 2.88e-67 216
Msa1032450 AT4G00350.1 44.915 236 129 1 28 263 88 322 9.84e-65 211
Msa1032450 AT3G26590.1 40.714 280 149 1 1 263 1 280 3.81e-64 209
Msa1032450 AT4G25640.3 40.684 263 148 2 1 263 14 268 1.37e-63 206
Msa1032450 AT4G25640.1 40.684 263 148 2 1 263 14 268 1.67e-63 206
Msa1032450 AT4G25640.2 40.684 263 148 2 1 263 14 268 3.85e-63 206
Msa1032450 AT3G03620.2 40.239 251 150 0 13 263 22 272 1.85e-62 204
Msa1032450 AT3G03620.1 40.239 251 150 0 13 263 22 272 1.85e-62 204
Msa1032450 AT5G38030.1 39.286 280 153 1 1 263 1 280 4.91e-61 200
Msa1032450 AT1G12950.1 41.803 244 142 0 20 263 59 302 6.72e-60 198
Msa1032450 AT1G23300.1 43.033 244 139 0 20 263 36 279 2.06e-57 191
Msa1032450 AT1G61890.3 39.568 278 153 4 1 263 6 283 9.53e-56 186
Msa1032450 AT1G61890.2 39.568 278 153 4 1 263 6 283 1.88e-55 186
Msa1032450 AT1G61890.1 39.568 278 153 4 1 263 6 283 2.70e-55 185
Msa1032450 AT3G21690.1 44.715 246 135 1 19 263 43 288 1.37e-54 184
Msa1032450 AT1G11670.1 41.199 267 149 3 2 263 23 286 5.84e-53 179
Msa1032450 AT1G47530.2 46.629 178 95 0 86 263 1 178 1.11e-47 163
Msa1032450 AT3G26590.2 43.820 178 100 0 86 263 1 178 1.85e-44 154
Msa1032450 AT4G21910.3 36.759 253 154 3 16 263 39 290 3.51e-42 150
Msa1032450 AT4G21910.1 36.759 253 154 3 16 263 39 290 3.51e-42 150
Msa1032450 AT2G34360.2 35.385 260 152 5 11 263 13 263 7.75e-42 149
Msa1032450 AT4G21910.2 37.975 237 145 2 28 263 57 292 1.02e-41 149
Msa1032450 AT4G21910.4 37.975 237 145 2 28 263 57 292 1.02e-41 149
Msa1032450 AT5G52450.1 36.330 267 154 6 2 263 7 262 1.30e-41 149
Msa1032450 AT2G34360.1 35.385 260 152 5 11 263 13 263 1.52e-41 149
Msa1032450 AT3G59030.2 35.021 237 153 1 28 263 51 287 9.25e-41 145
Msa1032450 AT3G59030.1 35.021 237 153 1 28 263 51 287 3.96e-40 145
Msa1032450 AT1G73700.1 35.294 255 151 5 16 263 13 260 9.58e-39 141
Msa1032450 AT4G21903.1 38.249 217 132 2 48 263 73 288 5.17e-37 137
Msa1032450 AT4G21903.2 38.249 217 132 2 48 263 73 288 6.57e-37 137
Msa1032450 AT4G21903.3 37.989 179 110 1 86 263 1 179 6.59e-30 116
Msa1032450 AT1G71140.1 32.719 217 146 0 4 220 2 218 5.43e-29 114
Msa1032450 AT1G66760.4 33.333 216 131 5 9 220 14 220 1.88e-26 106
Msa1032450 AT1G66760.2 33.333 216 131 5 9 220 14 220 4.76e-26 106
Msa1032450 AT1G66760.1 33.333 216 131 5 9 220 14 220 5.41e-26 106
Msa1032450 AT3G23560.2 31.461 267 172 6 4 263 13 275 3.31e-24 100
Msa1032450 AT3G23560.1 31.461 267 172 6 4 263 13 275 6.00e-24 100
Msa1032450 AT1G15150.1 32.231 242 153 4 28 263 31 267 6.20e-24 100
Msa1032450 AT2G04080.1 33.333 213 132 3 15 219 8 218 8.65e-24 100
Msa1032450 AT2G04080.2 33.333 213 132 3 15 219 8 218 9.00e-24 100
Msa1032450 AT1G15160.1 30.216 278 168 6 1 263 1 267 2.75e-23 99.0
Msa1032450 AT1G64820.1 29.911 224 150 2 1 220 1 221 3.34e-22 95.9
Msa1032450 AT3G23550.1 27.306 271 178 5 2 263 7 267 2.39e-21 93.2
Msa1032450 AT2G04050.1 31.925 213 135 3 15 219 8 218 7.83e-21 91.7
Msa1032450 AT1G15170.1 31.513 238 160 2 28 263 34 270 7.67e-20 89.0
Msa1032450 AT2G04040.1 32.821 195 125 4 28 219 27 218 8.81e-20 88.6
Msa1032450 AT1G66780.1 31.868 182 123 1 45 226 52 232 1.68e-19 87.8
Msa1032450 AT1G58340.1 28.636 220 142 3 6 214 29 244 2.27e-19 87.8
Msa1032450 AT2G04070.1 31.776 214 134 5 15 219 8 218 2.72e-19 87.4
Msa1032450 AT1G15180.1 31.667 240 157 4 28 263 35 271 2.23e-18 84.7
Msa1032450 AT2G38510.1 27.391 230 159 4 35 259 13 239 4.91e-18 83.6
Msa1032450 AT2G04090.1 31.980 197 124 4 28 219 30 221 6.71e-18 83.2
Msa1032450 AT2G04100.2 31.282 195 128 4 28 219 30 221 3.09e-16 78.2
Msa1032450 AT2G04100.1 31.282 195 128 4 28 219 30 221 3.71e-16 78.2
Msa1032450 AT1G71870.1 26.455 189 135 2 27 213 23 209 1.41e-13 70.5
Msa1032450 AT5G19700.1 26.908 249 161 6 22 259 30 268 3.61e-13 69.3
Msa1032450 AT4G29140.1 26.336 262 173 7 6 256 33 285 1.51e-12 67.4
Msa1032450 AT5G49130.1 23.333 210 157 2 6 213 4 211 8.38e-12 65.1

Find 61 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGATTGAGTGATAATT+TGG 0.160735 7_1:-67358962 None:intergenic
AATATAAGTTGACCAATATT+TGG 0.173372 7_1:-67361158 None:intergenic
TTTCAATAAGTTTGGCCTTA+TGG 0.194756 7_1:+67361132 Msa1032450:CDS
ACTAAGCATAAGAAAATTTA+TGG 0.211737 7_1:-67358722 None:intergenic
TTTCTTCAGGTTTCATGTTA+TGG 0.213532 7_1:+67361267 Msa1032450:CDS
TCATCTAGCAACTTCTTCTT+TGG 0.229856 7_1:-67358834 None:intergenic
CAATCATTTGTTGGTCATAT+TGG 0.249494 7_1:+67358975 Msa1032450:CDS
TGGCCTAGGATAATTAAAAT+TGG 0.258540 7_1:-67360894 None:intergenic
TTAGAACTTCAAGTAGAAAA+TGG 0.259366 7_1:-67358664 None:intergenic
GTCAAGCTTTCCCTTTCTTC+AGG 0.265362 7_1:+67361254 Msa1032450:CDS
GCAATAAAAGCAAACAAAAT+TGG 0.278019 7_1:-67360966 None:intergenic
TGCAATGATTTCAATAAGTT+TGG 0.280321 7_1:+67361124 Msa1032450:CDS
CTGTTCATGTATTACTCTCT+TGG 0.280963 7_1:+67361066 Msa1032450:CDS
GCCTTATGGATTCCAAATAT+TGG 0.286497 7_1:+67361146 Msa1032450:CDS
AGATGAAAATCTTGTGAATA+TGG 0.308578 7_1:-67358931 None:intergenic
TAGATTCGTCAATGGCATTC+TGG 0.316111 7_1:+67359043 Msa1032450:CDS
TAGCAGGAACCATTGGTTAT+TGG 0.337312 7_1:+67360937 Msa1032450:CDS
GCATACGGTGCAAAAGAATA+TGG 0.338654 7_1:+67360786 Msa1032450:CDS
AAGCTAATGTGGGTGGTTGC+AGG 0.359138 7_1:+67358903 Msa1032450:CDS
CTTGTGCTATGGTTTCATCT+TGG 0.374871 7_1:-67360914 None:intergenic
TTTGTGACTGAAGGAATGTT+TGG 0.384067 7_1:-67361001 None:intergenic
ACAAGAAGGAAAATTCAATA+TGG 0.384877 7_1:+67358797 Msa1032450:exon
ATTATCACTCAATCATTTGT+TGG 0.393308 7_1:+67358966 Msa1032450:CDS
TAACAATGAAAATCAAGCTT+GGG 0.412212 7_1:+67361093 Msa1032450:CDS
CTATGGTTTCATCTTGGCCT+AGG 0.413225 7_1:-67360908 None:intergenic
GAACATTATTATTGCATACT+TGG 0.415000 7_1:+67361028 Msa1032450:CDS
ACCAATATTTGGAATCCATA+AGG 0.415630 7_1:-67361147 None:intergenic
AAAATCAAGCTTGGGATTGT+TGG 0.452702 7_1:+67361101 Msa1032450:CDS
TGCAAAAGAATATGGAATGA+TGG 0.459585 7_1:+67360794 Msa1032450:CDS
GAAAATCTTGTGAATATGGC+TGG 0.474697 7_1:-67358927 None:intergenic
GTTCTTGTTAGATTCGTCAA+TGG 0.477427 7_1:+67359035 Msa1032450:CDS
GTGGTTGGTGTTCTGATACT+TGG 0.477864 7_1:+67361189 Msa1032450:CDS
GGTTCCTGCTACTTGTGCTA+TGG 0.479039 7_1:-67360925 None:intergenic
AGAAGAAGAAGAATTGTCAT+TGG 0.479669 7_1:+67358857 Msa1032450:CDS
TTAACAATGAAAATCAAGCT+TGG 0.486475 7_1:+67361092 Msa1032450:CDS
TAACATGAAACCTGAAGAAA+GGG 0.491734 7_1:-67361264 None:intergenic
GAAAGGGAAAGCTTGACAAC+AGG 0.493053 7_1:-67361248 None:intergenic
GAGTATATCTTCAAAGATCA+TGG 0.493939 7_1:+67360817 Msa1032450:CDS
ATAACATGAAACCTGAAGAA+AGG 0.497739 7_1:-67361265 None:intergenic
TTGTGACTGAAGGAATGTTT+GGG 0.500082 7_1:-67361000 None:intergenic
ATATAATTTGTAGTTAGGAA+TGG 0.513509 7_1:+67360734 Msa1032450:intron
GCACAAGTAGCAGGAACCAT+TGG 0.529388 7_1:+67360930 Msa1032450:CDS
GAATGTTTGGGTAGTGAATG+AGG 0.529494 7_1:-67360988 None:intergenic
GTTAGGAATGGCTAGTGCAT+TGG 0.537339 7_1:+67360746 Msa1032450:intron
TTATATTTATTACATGTGGT+TGG 0.539646 7_1:+67361174 Msa1032450:CDS
GCAAAAGAATATGGAATGAT+GGG 0.553514 7_1:+67360795 Msa1032450:CDS
CAACTTATATTTATTACATG+TGG 0.553817 7_1:+67361170 Msa1032450:CDS
AGAAGGAAAATTCAATATGG+AGG 0.560341 7_1:+67358800 Msa1032450:exon
TGTTCCTGCTTTGTGACTGA+AGG 0.561666 7_1:-67361010 None:intergenic
GAAGGAAAATTCAATATGGA+GGG 0.561732 7_1:+67358801 Msa1032450:exon
GAAACCATAGCACAAGTAGC+AGG 0.568631 7_1:+67360921 Msa1032450:CDS
TGGTGTTCTGATACTTGGAA+AGG 0.574232 7_1:+67361194 Msa1032450:CDS
TGTCATTGGTGAAGAAGATG+TGG 0.581561 7_1:+67358871 Msa1032450:CDS
GGAGTTGTGAAGATGAATAG+TGG 0.583244 7_1:-67360873 None:intergenic
CATTCCTTCAGTCACAAAGC+AGG 0.586851 7_1:+67361006 Msa1032450:CDS
TGGAATTGACCAATAACCAA+TGG 0.593039 7_1:-67360946 None:intergenic
AGTGCATTGGCAACACTATG+TGG 0.597511 7_1:+67360759 Msa1032450:CDS
ACACTATGTGGACAAGCATA+CGG 0.598328 7_1:+67360771 Msa1032450:CDS
GGAAAGAGAGCAAGCTAATG+TGG 0.601094 7_1:+67358892 Msa1032450:CDS
AGAGAGCAAGCTAATGTGGG+TGG 0.672151 7_1:+67358896 Msa1032450:CDS
GAAAGAGAGCAAGCTAATGT+GGG 0.682728 7_1:+67358893 Msa1032450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTAATTCTTTTTTTTTTT+TGG + chr7_1:67359250-67359269 Msa1032450:intron 10.0%
!!! CTTAATTCTTTTTTTTTTTT+GGG + chr7_1:67359251-67359270 Msa1032450:intron 10.0%
!! TATCATCAATATAAATATTT+GGG - chr7_1:67359627-67359646 None:intergenic 10.0%
!! TTATCATCAATATAAATATT+TGG - chr7_1:67359628-67359647 None:intergenic 10.0%
!! AGATAGAAAAATATATAAAT+AGG + chr7_1:67359867-67359886 Msa1032450:intron 10.0%
!!! TTTAATTAACAAATGTTTTT+TGG - chr7_1:67359909-67359928 None:intergenic 10.0%
!! TTATGATAAATTACTTTAAA+TGG - chr7_1:67360146-67360165 None:intergenic 10.0%
!! TATTGAAAAATAAAACAAGA+AGG + chr7_1:67358783-67358802 Msa1032450:five_prime_UTR 15.0%
!! AAGTTTCAAAAATAATCATA+TGG + chr7_1:67359577-67359596 Msa1032450:intron 15.0%
!! AGTTTCAAAAATAATCATAT+GGG + chr7_1:67359578-67359597 Msa1032450:intron 15.0%
!!! GTTTTAGACAATAAATAAAT+AGG + chr7_1:67359676-67359695 Msa1032450:intron 15.0%
!!! AATTTTAACACTAATATTCA+TGG - chr7_1:67359947-67359966 None:intergenic 15.0%
!! ATGAATATTAGTGTTAAAAT+TGG + chr7_1:67359946-67359965 Msa1032450:intron 15.0%
!!! ATTCTCTTATTTTATGTTTT+CGG - chr7_1:67360279-67360298 None:intergenic 15.0%
!!! AATTGATATAATTTGTAGTT+AGG + chr7_1:67360729-67360748 Msa1032450:intron 15.0%
!! ACTAAGCATAAGAAAATTTA+TGG - chr7_1:67358725-67358744 None:intergenic 20.0%
!!! AAAAAACATGTTTCTTTTTG+AGG + chr7_1:67359186-67359205 Msa1032450:intron 20.0%
!!! AAAAACATGTTTCTTTTTGA+GGG + chr7_1:67359187-67359206 Msa1032450:intron 20.0%
!! TGTGAAATGAATAAGAAAAT+TGG + chr7_1:67359551-67359570 Msa1032450:intron 20.0%
!! GTGAAATGAATAAGAAAATT+GGG + chr7_1:67359552-67359571 Msa1032450:intron 20.0%
!!! ATAAACTTATGTCACATTTT+TGG - chr7_1:67359756-67359775 None:intergenic 20.0%
!!! CATAAGTTTATTTCTTTTGA+AGG + chr7_1:67359765-67359784 Msa1032450:intron 20.0%
!! TCAAAAAAAAAATTAGTGTG+TGG + chr7_1:67360209-67360228 Msa1032450:intron 20.0%
!!! ATAAAACTCAGTTAATTTGT+TGG - chr7_1:67360501-67360520 None:intergenic 20.0%
!! TGAGTTAAAGTAGATTTAAA+AGG + chr7_1:67360616-67360635 Msa1032450:intron 20.0%
!! AAGTAGATTTAAAAGGTAAA+AGG + chr7_1:67360623-67360642 Msa1032450:intron 20.0%
!!! CATGTATTTTTTGAATATTG+TGG - chr7_1:67360666-67360685 None:intergenic 20.0%
!! TTTATAAAAGCCATTAGTAT+TGG - chr7_1:67360711-67360730 None:intergenic 20.0%
!!! ATATAATTTGTAGTTAGGAA+TGG + chr7_1:67360734-67360753 Msa1032450:intron 20.0%
!!! AATATAAGTTGACCAATATT+TGG - chr7_1:67361161-67361180 None:intergenic 20.0%
!! CAACTTATATTTATTACATG+TGG + chr7_1:67361170-67361189 Msa1032450:CDS 20.0%
!! TTATATTTATTACATGTGGT+TGG + chr7_1:67361174-67361193 Msa1032450:CDS 20.0%
!!! TTCTCTAAGATATTTCTTTT+TGG + chr7_1:67361300-67361319 Msa1032450:three_prime_UTR 20.0%
! TTAGAACTTCAAGTAGAAAA+TGG - chr7_1:67358667-67358686 None:intergenic 25.0%
! ACAAGAAGGAAAATTCAATA+TGG + chr7_1:67358797-67358816 Msa1032450:exon 25.0%
! AGATGAAAATCTTGTGAATA+TGG - chr7_1:67358934-67358953 None:intergenic 25.0%
!! TTCACAAGATTTTCATCTTT+TGG + chr7_1:67358936-67358955 Msa1032450:CDS 25.0%
! CAAATGATTGAGTGATAATT+TGG - chr7_1:67358965-67358984 None:intergenic 25.0%
! ATTATCACTCAATCATTTGT+TGG + chr7_1:67358966-67358985 Msa1032450:CDS 25.0%
!!! TATTTTTGTGATGATTCTAG+TGG + chr7_1:67359140-67359159 Msa1032450:intron 25.0%
!! TCTAGTGGATCTAAAATAAA+AGG + chr7_1:67359155-67359174 Msa1032450:intron 25.0%
!! CTAGTGGATCTAAAATAAAA+GGG + chr7_1:67359156-67359175 Msa1032450:intron 25.0%
!! TAGTGGATCTAAAATAAAAG+GGG + chr7_1:67359157-67359176 Msa1032450:intron 25.0%
! TTGGAAAAAAGTTGAAGATT+TGG + chr7_1:67359218-67359237 Msa1032450:intron 25.0%
!!! TTTTTTGGGTCAGTTTTTTT+TGG + chr7_1:67359265-67359284 Msa1032450:intron 25.0%
!!! TTTTTGGGTCAGTTTTTTTT+GGG + chr7_1:67359266-67359285 Msa1032450:intron 25.0%
! ACAATGCATTATTATATGCA+GGG - chr7_1:67359370-67359389 None:intergenic 25.0%
! AAATATTTGGGAAGATAGAA+AGG - chr7_1:67359615-67359634 None:intergenic 25.0%
!! AGAAGAATACAAAAAAGCAT+AGG + chr7_1:67359821-67359840 Msa1032450:intron 25.0%
!! GAAGAATACAAAAAAGCATA+GGG + chr7_1:67359822-67359841 Msa1032450:intron 25.0%
!!! AAATTCACACATTTTAAGTG+TGG + chr7_1:67360032-67360051 Msa1032450:intron 25.0%
! TGTGGAAAAATAGAGAATTT+GGG + chr7_1:67360050-67360069 Msa1032450:intron 25.0%
!! TATTGACTATACTCGAAATA+TGG + chr7_1:67360518-67360537 Msa1032450:intron 25.0%
! TTTGAATATTGTGGTAGTAT+AGG - chr7_1:67360657-67360676 None:intergenic 25.0%
!!! ACTCCAATTTTAATTATCCT+AGG + chr7_1:67360891-67360910 Msa1032450:CDS 25.0%
! GCAATAAAAGCAAACAAAAT+TGG - chr7_1:67360969-67360988 None:intergenic 25.0%
! GAACATTATTATTGCATACT+TGG + chr7_1:67361028-67361047 Msa1032450:CDS 25.0%
! TTAACAATGAAAATCAAGCT+TGG + chr7_1:67361092-67361111 Msa1032450:CDS 25.0%
! TAACAATGAAAATCAAGCTT+GGG + chr7_1:67361093-67361112 Msa1032450:CDS 25.0%
! TGCAATGATTTCAATAAGTT+TGG + chr7_1:67361124-67361143 Msa1032450:CDS 25.0%
!!! TTTTAGCTTTACAAGATCTT+TGG + chr7_1:67361225-67361244 Msa1032450:CDS 25.0%
AGAAGGAAAATTCAATATGG+AGG + chr7_1:67358800-67358819 Msa1032450:exon 30.0%
GAAGGAAAATTCAATATGGA+GGG + chr7_1:67358801-67358820 Msa1032450:exon 30.0%
AGAAGAAGAAGAATTGTCAT+TGG + chr7_1:67358857-67358876 Msa1032450:CDS 30.0%
! CAATCATTTGTTGGTCATAT+TGG + chr7_1:67358975-67358994 Msa1032450:CDS 30.0%
TCTCTTTCACATTATTCTAG+TGG + chr7_1:67359095-67359114 Msa1032450:intron 30.0%
!! CTTTTTGAGGGAATTGTTTT+TGG + chr7_1:67359199-67359218 Msa1032450:intron 30.0%
CAATGCATTATTATATGCAG+GGG - chr7_1:67359369-67359388 None:intergenic 30.0%
GACAATGCATTATTATATGC+AGG - chr7_1:67359371-67359390 None:intergenic 30.0%
! TAGCAGTTAGCATATAGTTT+TGG + chr7_1:67359492-67359511 Msa1032450:intron 30.0%
! TTTGAAGTACCAACATAGTT+TGG - chr7_1:67359728-67359747 None:intergenic 30.0%
!! TCTATCTCTGCTTTTGAATT+TGG - chr7_1:67359854-67359873 None:intergenic 30.0%
GTGTGGAAAAATAGAGAATT+TGG + chr7_1:67360049-67360068 Msa1032450:intron 30.0%
GTGGAAAAATAGAGAATTTG+GGG + chr7_1:67360051-67360070 Msa1032450:intron 30.0%
TTGTCTTCTTAGTTTCTTTG+AGG - chr7_1:67360372-67360391 None:intergenic 30.0%
AACTCTAGTGATTAACTAAG+AGG + chr7_1:67360407-67360426 Msa1032450:intron 30.0%
AAACAATAGAGTTTGTCGAA+AGG - chr7_1:67360476-67360495 None:intergenic 30.0%
! CATTAGTATTGGACTTAGTT+TGG - chr7_1:67360700-67360719 None:intergenic 30.0%
CAAACTAAGTCCAATACTAA+TGG + chr7_1:67360698-67360717 Msa1032450:intron 30.0%
TGCAAAAGAATATGGAATGA+TGG + chr7_1:67360794-67360813 Msa1032450:CDS 30.0%
GCAAAAGAATATGGAATGAT+GGG + chr7_1:67360795-67360814 Msa1032450:CDS 30.0%
GAGTATATCTTCAAAGATCA+TGG + chr7_1:67360817-67360836 Msa1032450:CDS 30.0%
TGGCCTAGGATAATTAAAAT+TGG - chr7_1:67360897-67360916 None:intergenic 30.0%
!! TTTCAATAAGTTTGGCCTTA+TGG + chr7_1:67361132-67361151 Msa1032450:CDS 30.0%
! ACCAATATTTGGAATCCATA+AGG - chr7_1:67361150-67361169 None:intergenic 30.0%
TAACATGAAACCTGAAGAAA+GGG - chr7_1:67361267-67361286 None:intergenic 30.0%
ATAACATGAAACCTGAAGAA+AGG - chr7_1:67361268-67361287 None:intergenic 30.0%
! TTTCTTCAGGTTTCATGTTA+TGG + chr7_1:67361267-67361286 Msa1032450:CDS 30.0%
TCATCTAGCAACTTCTTCTT+TGG - chr7_1:67358837-67358856 None:intergenic 35.0%
GAAAATCTTGTGAATATGGC+TGG - chr7_1:67358930-67358949 None:intergenic 35.0%
GTTCTTGTTAGATTCGTCAA+TGG + chr7_1:67359035-67359054 Msa1032450:CDS 35.0%
ACCTCATAAGGTGAATAAGT+GGG + chr7_1:67359321-67359340 Msa1032450:intron 35.0%
ATAGTTTGGATGTTATGCAG+TGG - chr7_1:67359714-67359733 None:intergenic 35.0%
GCATAACATCCAAACTATGT+TGG + chr7_1:67359716-67359735 Msa1032450:intron 35.0%
! ATACAAAAAAGCATAGGGCA+TGG + chr7_1:67359827-67359846 Msa1032450:intron 35.0%
! AGACTTGTTCTCACTAAACA+GGG - chr7_1:67360005-67360024 None:intergenic 35.0%
! TAGACTTGTTCTCACTAAAC+AGG - chr7_1:67360006-67360025 None:intergenic 35.0%
TGCAAGGAAGATTATATGCA+GGG - chr7_1:67360096-67360115 None:intergenic 35.0%
TTGCAAGGAAGATTATATGC+AGG - chr7_1:67360097-67360116 None:intergenic 35.0%
CAACTCAATTGTTAGTTGCA+AGG - chr7_1:67360112-67360131 None:intergenic 35.0%
ATCACTAGAGTTCAATGACT+TGG - chr7_1:67360399-67360418 None:intergenic 35.0%
TGGAATTGACCAATAACCAA+TGG - chr7_1:67360949-67360968 None:intergenic 35.0%
TTGTGACTGAAGGAATGTTT+GGG - chr7_1:67361003-67361022 None:intergenic 35.0%
TTTGTGACTGAAGGAATGTT+TGG - chr7_1:67361004-67361023 None:intergenic 35.0%
CTGTTCATGTATTACTCTCT+TGG + chr7_1:67361066-67361085 Msa1032450:CDS 35.0%
AAAATCAAGCTTGGGATTGT+TGG + chr7_1:67361101-67361120 Msa1032450:CDS 35.0%
GCCTTATGGATTCCAAATAT+TGG + chr7_1:67361146-67361165 Msa1032450:CDS 35.0%
TGTCATTGGTGAAGAAGATG+TGG + chr7_1:67358871-67358890 Msa1032450:CDS 40.0%
GAAAGAGAGCAAGCTAATGT+GGG + chr7_1:67358893-67358912 Msa1032450:CDS 40.0%
TAGATTCGTCAATGGCATTC+TGG + chr7_1:67359043-67359062 Msa1032450:CDS 40.0%
!!! TTTTTTTTGGGTCAGGTAGC+AGG + chr7_1:67359278-67359297 Msa1032450:intron 40.0%
TGGCTAGAATTCACCTCATA+AGG + chr7_1:67359309-67359328 Msa1032450:intron 40.0%
CACCTCATAAGGTGAATAAG+TGG + chr7_1:67359320-67359339 Msa1032450:intron 40.0%
CCTCATAAGGTGAATAAGTG+GGG + chr7_1:67359322-67359341 Msa1032450:intron 40.0%
TATCAACTGAGCTATGCTCA+CGG + chr7_1:67359392-67359411 Msa1032450:intron 40.0%
!! CTAGAGTTCAATGACTTGGT+TGG - chr7_1:67360395-67360414 None:intergenic 40.0%
TCGACAGAATCTGGATTCTT+CGG + chr7_1:67360436-67360455 Msa1032450:intron 40.0%
ACACTATGTGGACAAGCATA+CGG + chr7_1:67360771-67360790 Msa1032450:CDS 40.0%
GCATACGGTGCAAAAGAATA+TGG + chr7_1:67360786-67360805 Msa1032450:CDS 40.0%
GGAGTTGTGAAGATGAATAG+TGG - chr7_1:67360876-67360895 None:intergenic 40.0%
CTTGTGCTATGGTTTCATCT+TGG - chr7_1:67360917-67360936 None:intergenic 40.0%
! TAGCAGGAACCATTGGTTAT+TGG + chr7_1:67360937-67360956 Msa1032450:CDS 40.0%
GAATGTTTGGGTAGTGAATG+AGG - chr7_1:67360991-67361010 None:intergenic 40.0%
TGGTGTTCTGATACTTGGAA+AGG + chr7_1:67361194-67361213 Msa1032450:CDS 40.0%
GGAAAGAGAGCAAGCTAATG+TGG + chr7_1:67358892-67358911 Msa1032450:CDS 45.0%
!!! GGGTCAGTTTTTTTTGGGTC+AGG + chr7_1:67359271-67359290 Msa1032450:intron 45.0%
TGAGGTGAATTCTAGCCACT+AGG - chr7_1:67359307-67359326 None:intergenic 45.0%
CCCCACTTATTCACCTTATG+AGG - chr7_1:67359325-67359344 None:intergenic 45.0%
ATTATTATATGCAGGGGCCG+GGG - chr7_1:67359363-67359382 None:intergenic 45.0%
CATTATTATATGCAGGGGCC+GGG - chr7_1:67359364-67359383 None:intergenic 45.0%
GCATTATTATATGCAGGGGC+CGG - chr7_1:67359365-67359384 None:intergenic 45.0%
GTGAGCATAGCTCAGTTGAT+AGG - chr7_1:67359393-67359412 None:intergenic 45.0%
ATCAACTGAGCTATGCTCAC+GGG + chr7_1:67359393-67359412 Msa1032450:intron 45.0%
! AGAATTTGGGGTTCAAGCTC+AGG + chr7_1:67360063-67360082 Msa1032450:intron 45.0%
AGGAATCGTTCGACAGAATC+TGG + chr7_1:67360427-67360446 Msa1032450:intron 45.0%
GTTAGGAATGGCTAGTGCAT+TGG + chr7_1:67360746-67360765 Msa1032450:intron 45.0%
! AGTGCATTGGCAACACTATG+TGG + chr7_1:67360759-67360778 Msa1032450:CDS 45.0%
CTATGGTTTCATCTTGGCCT+AGG - chr7_1:67360911-67360930 None:intergenic 45.0%
GAAACCATAGCACAAGTAGC+AGG + chr7_1:67360921-67360940 Msa1032450:CDS 45.0%
CATTCCTTCAGTCACAAAGC+AGG + chr7_1:67361006-67361025 Msa1032450:CDS 45.0%
TGTTCCTGCTTTGTGACTGA+AGG - chr7_1:67361013-67361032 None:intergenic 45.0%
! GTGGTTGGTGTTCTGATACT+TGG + chr7_1:67361189-67361208 Msa1032450:CDS 45.0%
GAAAGGGAAAGCTTGACAAC+AGG - chr7_1:67361251-67361270 None:intergenic 45.0%
GTCAAGCTTTCCCTTTCTTC+AGG + chr7_1:67361254-67361273 Msa1032450:CDS 45.0%
!!! CTATTTTTTTTTATTATTAT+TGG - chr7_1:67359455-67359474 None:intergenic 5.0%
!! AATTTAAATTATTTCAAATT+AGG + chr7_1:67360335-67360354 Msa1032450:intron 5.0%
AGAGAGCAAGCTAATGTGGG+TGG + chr7_1:67358896-67358915 Msa1032450:CDS 50.0%
AAGCTAATGTGGGTGGTTGC+AGG + chr7_1:67358903-67358922 Msa1032450:CDS 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG + chr7_1:67359329-67359348 Msa1032450:intron 50.0%
! GGTTCCTGCTACTTGTGCTA+TGG - chr7_1:67360928-67360947 None:intergenic 50.0%
GCACAAGTAGCAGGAACCAT+TGG + chr7_1:67360930-67360949 Msa1032450:CDS 50.0%
TCAGGTAGCAGGTAGCCTAG+TGG + chr7_1:67359289-67359308 Msa1032450:intron 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG + chr7_1:67359330-67359349 Msa1032450:intron 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG + chr7_1:67359331-67359350 Msa1032450:intron 55.0%
GGTGTCCGGGGTTCGAACCC+CGG + chr7_1:67359343-67359362 Msa1032450:intron 70.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr7_1:67359351-67359370 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67358661 67361325 67358661 ID=Msa1032450;Name=Msa1032450
chr7_1 mRNA 67358661 67361325 67358661 ID=Msa1032450-mRNA-1;Parent=Msa1032450;Name=Msa1032450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=155|1|1|1|1|1|2|33|264
chr7_1 exon 67358661 67359064 67358661 ID=Msa1032450-mRNA-1:exon:15427;Parent=Msa1032450-mRNA-1
chr7_1 exon 67360747 67361325 67360747 ID=Msa1032450-mRNA-1:exon:15428;Parent=Msa1032450-mRNA-1
chr7_1 five_prime_UTR 67358661 67358815 67358661 ID=Msa1032450-mRNA-1:five_prime_utr;Parent=Msa1032450-mRNA-1
chr7_1 CDS 67358816 67359064 67358816 ID=Msa1032450-mRNA-1:cds;Parent=Msa1032450-mRNA-1
chr7_1 CDS 67360747 67361292 67360747 ID=Msa1032450-mRNA-1:cds;Parent=Msa1032450-mRNA-1
chr7_1 three_prime_UTR 67361293 67361325 67361293 ID=Msa1032450-mRNA-1:three_prime_utr;Parent=Msa1032450-mRNA-1
Gene Sequence

>Msa1032450

ATGGAGGGAGATCATGATCCAAAGAAGAAGTTGCTAGATGAAGAAGAAGAAGAATTGTCATTGGTGAAGAAGATGTGGAAAGAGAGCAAGCTAATGTGGGTGGTTGCAGGTCCAGCCATATTCACAAGATTTTCATCTTTTGGTGTCCAAATTATCACTCAATCATTTGTTGGTCATATTGGTTCTACTGAACTTGCTGCATATTCTCTAGTATTCACTGTTCTTGTTAGATTCGTCAATGGCATTCTGTTAGGAATGGCTAGTGCATTGGCAACACTATGTGGACAAGCATACGGTGCAAAAGAATATGGAATGATGGGAGTATATCTTCAAAGATCATGGATAGTTTTATCTTTAACTGCACTCATTCTTCTTCCACTATTCATCTTCACAACTCCAATTTTAATTATCCTAGGCCAAGATGAAACCATAGCACAAGTAGCAGGAACCATTGGTTATTGGTCAATTCCAATTTTGTTTGCTTTTATTGCCTCATTCACTACCCAAACATTCCTTCAGTCACAAAGCAGGAACATTATTATTGCATACTTGGCAGCTTTCTCAATTTCTGTTCATGTATTACTCTCTTGGCTTTTAACAATGAAAATCAAGCTTGGGATTGTTGGTGCAATGATTTCAATAAGTTTGGCCTTATGGATTCCAAATATTGGTCAACTTATATTTATTACATGTGGTTGGTGTTCTGATACTTGGAAAGGTTTCTCATTTTTAGCTTTACAAGATCTTTGGCCTGTTGTCAAGCTTTCCCTTTCTTCAGGTTTCATGTTATGGTGA

Protein sequence

>Msa1032450

MEGDHDPKKKLLDEEEEELSLVKKMWKESKLMWVVAGPAIFTRFSSFGVQIITQSFVGHIGSTELAAYSLVFTVLVRFVNGILLGMASALATLCGQAYGAKEYGMMGVYLQRSWIVLSLTALILLPLFIFTTPILIILGQDETIAQVAGTIGYWSIPILFAFIASFTTQTFLQSQSRNIIIAYLAAFSISVHVLLSWLLTMKIKLGIVGAMISISLALWIPNIGQLIFITCGWCSDTWKGFSFLALQDLWPVVKLSLSSGFMLW*