AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169990 MtrunA17_Chr7g0254531 92.000 400 13 1 1 381 1 400 0.0 724
Msa1169990 MtrunA17_Chr7g0254521 74.495 396 81 2 1 376 90 485 0.0 587
Msa1169990 MtrunA17_Chr7g0254511 69.367 395 101 2 1 376 89 482 0.0 543
Msa1169990 MtrunA17_Chr6g0460541 65.316 395 117 2 1 376 5 398 3.08e-178 501
Msa1169990 MtrunA17_Chr7g0254501 68.051 313 80 2 86 379 2 313 7.04e-145 413
Msa1169990 MtrunA17_Chr5g0412541 49.100 389 178 2 1 369 95 483 3.10e-127 375
Msa1169990 MtrunA17_Chr3g0132531 48.608 395 183 2 1 375 105 499 2.59e-122 362
Msa1169990 MtrunA17_Chr8g0368001 44.041 386 197 1 1 367 109 494 2.19e-119 355
Msa1169990 MtrunA17_Chr2g0288281 45.244 389 193 2 1 369 1 389 8.78e-118 347
Msa1169990 MtrunA17_Chr4g0024501 46.134 388 189 2 1 368 123 510 2.63e-115 345
Msa1169990 MtrunA17_Chr5g0412571 45.823 395 190 5 1 374 40 431 2.79e-115 342
Msa1169990 MtrunA17_Chr2g0322671 44.784 393 197 2 1 373 111 503 2.12e-114 342
Msa1169990 MtrunA17_Chr1g0154441 45.078 386 193 1 1 367 1 386 3.72e-114 338
Msa1169990 MtrunA17_Chr1g0202761 43.750 400 205 2 1 381 102 500 3.80e-113 339
Msa1169990 MtrunA17_Chr5g0412771 46.632 386 187 1 1 367 115 500 8.39e-112 336
Msa1169990 MtrunA17_Chr7g0248051 43.188 389 201 2 1 370 129 516 5.91e-97 298
Msa1169990 MtrunA17_Chr6g0468531 37.374 396 228 2 1 377 90 484 2.52e-95 293
Msa1169990 MtrunA17_Chr6g0468521 38.325 394 221 3 1 373 89 481 3.98e-91 282
Msa1169990 MtrunA17_Chr5g0442331 41.103 399 215 2 1 379 105 503 7.30e-87 271
Msa1169990 MtrunA17_Chr3g0132541 38.936 357 182 3 1 357 100 420 8.99e-81 254
Msa1169990 MtrunA17_Chr6g0468511 37.047 386 223 2 1 367 89 473 2.58e-80 254
Msa1169990 MtrunA17_Chr6g0460531 66.854 178 58 1 1 178 84 260 1.98e-77 239
Msa1169990 MtrunA17_Chr6g0483161 37.673 361 220 3 1 358 3 361 3.34e-77 243
Msa1169990 MtrunA17_Chr6g0460521 59.910 222 69 2 177 379 1 221 5.11e-73 227
Msa1169990 MtrunA17_Chr6g0483351 36.220 381 221 3 1 359 1 381 3.60e-72 231
Msa1169990 MtrunA17_Chr7g0251331 36.409 401 232 3 1 378 85 485 5.12e-72 233
Msa1169990 MtrunA17_Chr6g0449061 35.309 388 231 2 1 368 90 477 1.16e-71 232
Msa1169990 MtrunA17_Chr1g0208791 34.456 386 233 2 1 366 102 487 1.65e-71 232
Msa1169990 MtrunA17_Chr6g0483361 35.309 388 225 5 1 364 84 469 8.90e-70 226
Msa1169990 MtrunA17_Chr7g0251321 35.695 367 235 1 1 366 1 367 1.35e-69 223
Msa1169990 MtrunA17_Chr6g0483381 34.974 386 229 3 1 364 86 471 3.24e-69 225
Msa1169990 MtrunA17_Chr8g0392601 33.073 384 237 2 3 366 73 456 5.28e-68 222
Msa1169990 MtrunA17_Chr6g0477961 36.247 389 220 6 1 364 86 471 1.44e-67 221
Msa1169990 MtrunA17_Chr6g0483331 34.109 387 231 4 2 366 73 457 2.72e-67 220
Msa1169990 MtrunA17_Chr6g0483341 33.249 394 237 5 2 373 102 491 3.70e-67 220
Msa1169990 MtrunA17_Chr2g0317131 35.638 376 220 3 1 355 102 476 1.33e-65 216
Msa1169990 MtrunA17_Chr2g0317221 35.638 376 220 3 1 355 10 384 9.30e-65 212
Msa1169990 MtrunA17_Chr2g0317171 36.170 376 218 3 1 355 96 470 6.81e-62 206
Msa1169990 MtrunA17_Chr2g0317151 34.933 375 224 2 1 355 92 466 2.53e-61 204
Msa1169990 MtrunA17_Chr1g0208821 32.812 384 238 2 1 364 100 483 2.75e-60 202
Msa1169990 MtrunA17_Chr2g0317161 35.372 376 221 3 1 355 90 464 1.19e-59 200
Msa1169990 MtrunA17_Chr1g0208881 32.474 388 242 2 1 368 84 471 3.01e-58 196
Msa1169990 MtrunA17_Chr1g0208891 33.854 384 234 2 1 364 83 466 3.52e-58 196
Msa1169990 MtrunA17_Chr5g0440661 34.332 367 186 5 1 366 1 313 7.85e-53 177
Msa1169990 MtrunA17_Chr3g0140931 29.016 386 246 5 1 362 110 491 7.82e-46 165
Msa1169990 MtrunA17_Chr6g0473701 27.873 409 264 6 1 381 187 592 1.97e-43 159
Msa1169990 MtrunA17_Chr5g0397991 28.534 382 253 4 1 362 124 505 9.33e-42 153
Msa1169990 MtrunA17_Chr1g0203791 28.205 390 244 4 1 362 123 504 2.30e-41 152
Msa1169990 MtrunA17_Chr8g0364751 49.367 158 80 0 209 366 20 177 2.33e-40 141
Msa1169990 MtrunA17_Chr5g0428251 25.945 397 265 5 1 373 114 505 9.66e-39 145
Msa1169990 MtrunA17_Chr8g0364761 35.945 217 135 3 1 214 112 327 2.84e-35 132
Msa1169990 MtrunA17_Chr6g0467321 25.243 412 265 7 1 373 101 508 4.61e-35 135
Msa1169990 MtrunA17_Chr4g0013031 25.253 396 270 5 8 381 132 523 1.62e-34 133
Msa1169990 MtrunA17_Chr6g0483221 35.135 148 96 0 210 357 8 155 5.28e-29 110
Msa1169990 MtrunA17_Chr6g0483264 32.353 204 119 1 180 364 1 204 5.53e-29 112
Msa1169990 MtrunA17_Chr2g0295631 24.069 403 260 4 1 362 79 476 1.25e-27 114
Msa1169990 MtrunA17_Chr8g0389801 26.190 378 255 5 5 361 86 460 3.81e-27 112
Msa1169990 MtrunA17_Chr6g0483241 39.011 182 104 5 1 178 3 181 4.84e-27 105
Msa1169990 MtrunA17_Chr6g0483261 35.484 155 100 0 210 364 8 162 1.01e-24 99.8
Msa1169990 MtrunA17_Chr5g0442311 35.359 181 112 3 1 178 1 179 5.44e-22 92.4
Msa1169990 MtrunA17_Chr6g0487091 26.168 214 139 2 167 361 176 389 1.74e-18 86.7
Msa1169990 MtrunA17_Chr5g0398571 23.984 246 163 3 160 381 66 311 5.30e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169990 AT1G33110.1 58.081 396 145 2 1 377 94 487 2.19e-165 472
Msa1169990 AT1G33100.1 57.107 401 152 2 1 381 91 491 1.16e-163 468
Msa1169990 AT1G33090.1 56.359 401 155 2 1 381 94 494 1.52e-156 450
Msa1169990 AT1G33080.1 55.949 395 153 2 1 376 94 486 3.23e-156 449
Msa1169990 AT1G33080.2 57.447 376 141 1 1 357 94 469 2.05e-151 437
Msa1169990 AT1G33110.2 58.387 310 110 1 1 291 94 403 2.65e-123 362
Msa1169990 AT5G65380.1 50.129 389 174 2 1 369 95 483 3.42e-123 365
Msa1169990 AT5G44050.1 47.059 391 187 2 1 371 98 488 3.56e-120 357
Msa1169990 AT1G11670.1 46.173 392 191 2 1 372 108 499 3.29e-117 350
Msa1169990 AT1G47530.2 45.153 392 196 1 1 373 1 392 2.39e-115 341
Msa1169990 AT4G00350.1 44.221 398 202 2 1 379 146 542 7.48e-115 345
Msa1169990 AT1G61890.1 44.987 389 194 2 1 369 105 493 8.56e-115 343
Msa1169990 AT3G26590.2 44.560 386 195 1 1 367 1 386 1.14e-114 340
Msa1169990 AT1G47530.1 45.855 386 190 1 1 367 93 478 2.65e-114 342
Msa1169990 AT3G26590.1 44.560 386 195 1 1 367 103 488 1.78e-113 340
Msa1169990 AT3G03620.2 45.178 394 196 2 1 375 95 487 8.37e-113 338
Msa1169990 AT3G03620.1 45.178 394 196 2 1 375 95 487 8.37e-113 338
Msa1169990 AT5G38030.1 43.511 393 203 1 1 374 103 495 1.94e-112 337
Msa1169990 AT3G21690.1 46.056 393 192 2 1 373 110 502 3.40e-112 337
Msa1169990 AT5G10420.1 47.208 394 188 2 1 374 96 489 5.21e-111 333
Msa1169990 AT1G61890.2 45.503 378 186 2 1 358 105 482 1.45e-110 333
Msa1169990 AT4G21903.3 43.367 392 202 2 1 372 1 392 7.60e-110 327
Msa1169990 AT4G21910.3 44.020 393 199 3 1 372 112 504 1.10e-109 331
Msa1169990 AT4G21910.1 44.020 393 199 3 1 372 112 504 1.10e-109 331
Msa1169990 AT4G21910.2 44.020 393 199 3 1 372 114 506 1.35e-109 330
Msa1169990 AT4G21910.4 44.020 393 199 3 1 372 114 506 1.35e-109 330
Msa1169990 AT1G12950.1 41.667 396 212 1 1 377 125 520 1.92e-109 330
Msa1169990 AT1G23300.1 43.687 396 204 1 1 377 102 497 3.79e-109 330
Msa1169990 AT4G21903.1 43.367 392 202 2 1 372 110 501 1.13e-108 328
Msa1169990 AT5G17700.2 42.377 387 204 1 1 368 92 478 1.84e-107 325
Msa1169990 AT5G17700.1 42.377 387 204 1 1 368 92 478 1.84e-107 325
Msa1169990 AT4G21903.2 43.005 386 200 2 1 366 110 495 7.95e-104 316
Msa1169990 AT4G25640.1 43.609 399 201 3 1 380 92 485 6.62e-103 313
Msa1169990 AT4G25640.2 43.609 399 201 3 1 380 92 485 2.68e-102 312
Msa1169990 AT1G61890.3 42.978 356 183 2 1 336 105 460 3.35e-93 287
Msa1169990 AT3G59030.1 41.344 387 203 5 1 365 109 493 6.56e-91 282
Msa1169990 AT4G25640.3 43.768 345 174 2 1 326 92 435 1.61e-89 278
Msa1169990 AT2G34360.1 35.176 398 232 5 2 381 86 475 1.07e-77 248
Msa1169990 AT5G17700.3 40.323 310 166 1 1 291 92 401 2.61e-77 244
Msa1169990 AT5G52450.1 35.128 390 233 2 2 371 85 474 1.33e-72 234
Msa1169990 AT2G34360.2 34.286 385 211 4 2 381 86 433 1.91e-71 230
Msa1169990 AT1G73700.1 35.354 396 228 3 2 373 83 474 8.15e-69 224
Msa1169990 AT1G66780.1 33.763 388 229 5 1 364 93 476 1.05e-63 211
Msa1169990 AT1G15150.1 33.247 385 235 3 1 364 89 472 1.58e-62 208
Msa1169990 AT1G64820.1 32.750 400 240 6 2 376 88 483 2.84e-62 208
Msa1169990 AT1G71140.1 33.933 389 227 7 1 364 84 467 2.97e-62 207
Msa1169990 AT1G15170.1 32.727 385 237 3 1 364 92 475 3.18e-61 204
Msa1169990 AT3G59030.2 37.662 308 172 2 1 288 109 416 2.40e-60 201
Msa1169990 AT1G15160.1 32.648 389 232 5 1 364 89 472 5.76e-60 201
Msa1169990 AT1G66760.2 32.642 386 236 4 1 364 86 469 4.54e-57 194
Msa1169990 AT1G15150.2 32.203 354 218 3 32 364 4 356 2.88e-55 186
Msa1169990 AT1G66760.1 32.283 381 234 4 1 359 86 464 3.53e-55 188
Msa1169990 AT1G15170.2 32.011 353 215 4 36 364 5 356 7.84e-55 185
Msa1169990 AT2G04070.1 33.938 386 231 6 1 364 85 468 1.13e-54 187
Msa1169990 AT2G04040.1 32.902 386 235 6 1 364 85 468 2.73e-54 186
Msa1169990 AT3G23550.1 31.733 375 236 2 1 355 89 463 2.82e-54 186
Msa1169990 AT2G04080.1 32.391 389 233 6 1 364 85 468 9.11e-54 185
Msa1169990 AT1G15180.1 32.134 389 234 5 1 364 93 476 1.02e-53 185
Msa1169990 AT3G23560.1 34.565 379 220 6 1 355 97 471 2.13e-53 184
Msa1169990 AT2G04080.2 31.948 385 232 6 1 360 85 464 1.15e-51 179
Msa1169990 AT2G04100.1 31.959 388 236 5 1 364 88 471 7.78e-51 177
Msa1169990 AT2G04050.1 32.051 390 233 7 1 364 85 468 3.27e-50 176
Msa1169990 AT2G04100.2 31.854 383 233 5 1 359 88 466 4.27e-49 172
Msa1169990 AT2G04090.1 30.670 388 241 5 1 364 88 471 1.32e-46 166
Msa1169990 AT1G66760.3 31.361 338 208 4 44 359 1 336 2.43e-45 159
Msa1169990 AT1G58340.1 26.799 403 271 6 1 381 116 516 3.20e-37 141
Msa1169990 AT2G38510.1 25.126 398 270 6 8 380 71 465 4.91e-36 137
Msa1169990 AT3G23560.2 33.974 312 178 6 1 288 97 404 4.81e-35 133
Msa1169990 AT1G71870.1 25.301 415 271 7 1 376 82 496 3.94e-33 129
Msa1169990 AT4G23030.1 28.967 397 250 8 4 374 94 484 1.13e-31 125
Msa1169990 AT1G66760.4 29.355 310 195 4 1 288 86 393 9.85e-31 121
Msa1169990 AT4G29140.1 26.098 387 256 6 1 362 114 495 2.80e-30 122
Msa1169990 AT5G52050.1 26.209 393 240 6 7 361 99 479 4.14e-29 118
Msa1169990 AT5G49130.1 25.000 400 266 5 1 366 84 483 5.29e-28 115
Msa1169990 AT5G19700.1 25.515 388 257 6 1 362 94 475 1.49e-26 111
Msa1169990 AT1G15180.2 28.114 281 169 6 36 288 5 280 4.62e-25 105
Msa1169990 AT2G04066.1 39.655 116 70 0 249 364 48 163 6.44e-24 97.4
Msa1169990 AT4G22790.1 25.700 393 250 9 1 361 88 470 3.46e-18 86.3

Find 84 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGCAAACTTTGCATCTT+TGG 0.128532 7_4:-63083185 None:intergenic
AATATAAGTTGACCAATATT+TGG 0.173372 7_4:-63081258 None:intergenic
TTTCAATAAGTTTGGCCTTA+TGG 0.194756 7_4:+63081232 Msa1169990:CDS
TTTCTTCAGGTTTCATGTTA+TGG 0.213532 7_4:+63081367 Msa1169990:CDS
CTTCCTTTCTGTAGGGTATA+TGG 0.215347 7_4:+63083683 Msa1169990:intron
TGGCCTAGGATAATTAAAAT+TGG 0.258540 7_4:-63080994 None:intergenic
GTCAAGCTTTCCCTTTCTTC+AGG 0.265362 7_4:+63081354 Msa1169990:CDS
GCAATAAAAGCAAACAAAAT+TGG 0.278019 7_4:-63081066 None:intergenic
TGCAATGATTTCAATAAGTT+TGG 0.280321 7_4:+63081224 Msa1169990:CDS
CTGTTCATGTATTACTCTCT+TGG 0.280963 7_4:+63081166 Msa1169990:CDS
GCCTTATGGATTCCAAATAT+TGG 0.286497 7_4:+63081246 Msa1169990:CDS
ATTCCTGTTGGGATTGTTCT+TGG 0.302775 7_4:+63083559 Msa1169990:CDS
GTCCTTACATCATTCACAAT+TGG 0.324954 7_4:+63083217 Msa1169990:CDS
TAGCAGGAACCATTGGTTAT+TGG 0.337312 7_4:+63081037 Msa1169990:CDS
GCATACGGTGCAAAAGAATA+TGG 0.338654 7_4:+63080886 Msa1169990:CDS
GGAAATGCAGGAGTTGCTAT+TGG 0.356337 7_4:+63083478 Msa1169990:intron
CTAGGTTGTTATTACATCAT+AGG 0.372662 7_4:+63083535 Msa1169990:CDS
CTTGTGCTATGGTTTCATCT+TGG 0.374871 7_4:-63081014 None:intergenic
ATATGGATTGGTATGTTGTT+TGG 0.377225 7_4:+63083700 Msa1169990:CDS
TTTGTGACTGAAGGAATGTT+TGG 0.384067 7_4:-63081101 None:intergenic
TCGTATTAATAAGTGGTCTA+AGG 0.405797 7_4:+63084124 Msa1169990:CDS
GATGCAACTGTTTCATGATC+AGG 0.408848 7_4:-63084152 None:intergenic
TAACAATGAAAATCAAGCTT+GGG 0.412212 7_4:+63081193 Msa1169990:CDS
CTATGGTTTCATCTTGGCCT+AGG 0.413225 7_4:-63081008 None:intergenic
GAACATTATTATTGCATACT+TGG 0.415000 7_4:+63081128 Msa1169990:CDS
ACCAATATTTGGAATCCATA+AGG 0.415630 7_4:-63081247 None:intergenic
TCCTTACATCATTCACAATT+GGG 0.421733 7_4:+63083218 Msa1169990:CDS
TAATCAGCTACAAAACTGAT+TGG 0.436530 7_4:+63083752 Msa1169990:CDS
TGAGGCCACGTCCTTGTTTG+TGG 0.438464 7_4:-63083296 None:intergenic
CAAAACTGATTGGGACAAAC+AGG 0.440943 7_4:+63083762 Msa1169990:CDS
TTTCTGTAGGGTATATGGAT+TGG 0.444215 7_4:+63083688 Msa1169990:intron
ACATCATAGGTATTCCTGTT+GGG 0.447520 7_4:+63083548 Msa1169990:CDS
AAAATCAAGCTTGGGATTGT+TGG 0.452702 7_4:+63081201 Msa1169990:CDS
TGCAAAAGAATATGGAATGA+TGG 0.459585 7_4:+63080894 Msa1169990:CDS
GTAAATATCAATCAATCGCT+TGG 0.462190 7_4:-63084194 None:intergenic
GCAGGAGTTGCTATTGGAGC+AGG 0.468595 7_4:+63083484 Msa1169990:intron
GTGGTTGGTGTTCTGATACT+TGG 0.477864 7_4:+63081289 Msa1169990:CDS
GGTTCCTGCTACTTGTGCTA+TGG 0.479039 7_4:-63081025 None:intergenic
TTAACAATGAAAATCAAGCT+TGG 0.486475 7_4:+63081192 Msa1169990:CDS
TAACATGAAACCTGAAGAAA+GGG 0.491734 7_4:-63081364 None:intergenic
GAAAGGGAAAGCTTGACAAC+AGG 0.493053 7_4:-63081348 None:intergenic
GAGTATATCTTCAAAGATCA+TGG 0.493939 7_4:+63080917 Msa1169990:CDS
ATAACATGAAACCTGAAGAA+AGG 0.497739 7_4:-63081365 None:intergenic
TTGTGACTGAAGGAATGTTT+GGG 0.500082 7_4:-63081100 None:intergenic
CTTAATTTGCAGTGTTAGAG+TGG 0.505711 7_4:+63083138 Msa1169990:intron
TACTCACCTTGACTTGCAAA+TGG 0.506891 7_4:-63083591 None:intergenic
TACATCATAGGTATTCCTGT+TGG 0.507006 7_4:+63083547 Msa1169990:CDS
TTACCAAGAACAATCCCAAC+AGG 0.507831 7_4:-63083562 None:intergenic
AAATTGATGCTCCATCCATA+TGG 0.510191 7_4:+63082090 Msa1169990:CDS
GTTAGAGTGGCAAATGAGCT+TGG 0.511731 7_4:+63083151 Msa1169990:CDS
ACCCAATTGTGAATGATGTA+AGG 0.512296 7_4:-63083219 None:intergenic
ATATAATTTGTAGTTAGGAA+TGG 0.513509 7_4:+63080834 None:intergenic
AGTGTTCAACCTGTACTATC+AGG 0.513854 7_4:+63083367 Msa1169990:CDS
AGTATAGAAACTGCTAATAG+AGG 0.517489 7_4:-63083337 None:intergenic
AATCAGCTACAAAACTGATT+GGG 0.519497 7_4:+63083753 Msa1169990:CDS
GCACAAGTAGCAGGAACCAT+TGG 0.529388 7_4:+63081030 Msa1169990:CDS
GAATGTTTGGGTAGTGAATG+AGG 0.529494 7_4:-63081088 None:intergenic
CTCGGAATCGTATTAATAAG+TGG 0.530392 7_4:+63084117 Msa1169990:CDS
AGTTTACCATTTGCAAGTCA+AGG 0.535482 7_4:+63083585 Msa1169990:CDS
GTGGCAAATGAGCTTGGAAA+AGG 0.536358 7_4:+63083157 Msa1169990:CDS
GTTAGGAATGGCTAGTGCAT+TGG 0.537339 7_4:+63080846 Msa1169990:exon
TTATATTTATTACATGTGGT+TGG 0.539646 7_4:+63081274 Msa1169990:CDS
CAAAAGGATTACCATATGGA+TGG 0.545135 7_4:-63082101 None:intergenic
GCAAAAGAATATGGAATGAT+GGG 0.553514 7_4:+63080895 Msa1169990:CDS
ATGCAACTGTTTCATGATCA+GGG 0.553642 7_4:-63084151 None:intergenic
CAACTTATATTTATTACATG+TGG 0.553817 7_4:+63081270 Msa1169990:CDS
ATGTGCAGGTAACTATTGCT+CGG 0.559960 7_4:+63084099 Msa1169990:intron
TGTTCCTGCTTTGTGACTGA+AGG 0.561666 7_4:-63081110 None:intergenic
GAAACCATAGCACAAGTAGC+AGG 0.568631 7_4:+63081021 Msa1169990:CDS
TGGTGTTCTGATACTTGGAA+AGG 0.574232 7_4:+63081294 Msa1169990:CDS
AAGGACGTGGCCTCAGCTGT+TGG 0.580851 7_4:+63083304 Msa1169990:CDS
GGAGTTGTGAAGATGAATAG+TGG 0.583244 7_4:-63080973 None:intergenic
CATTCCTTCAGTCACAAAGC+AGG 0.586851 7_4:+63081106 Msa1169990:CDS
GAATTAGTACCTGATAGTAC+AGG 0.588001 7_4:-63083376 None:intergenic
TGGAATTGACCAATAACCAA+TGG 0.593039 7_4:-63081046 None:intergenic
AGTGCATTGGCAACACTATG+TGG 0.597511 7_4:+63080859 Msa1169990:CDS
ACACTATGTGGACAAGCATA+CGG 0.598328 7_4:+63080871 Msa1169990:CDS
TATTAATAAGTGGTCTAAGG+TGG 0.600657 7_4:+63084127 Msa1169990:CDS
CTATGATGTAATAACAACCT+AGG 0.609684 7_4:-63083534 None:intergenic
ATTGTAGCATATGTGAACCT+AGG 0.624206 7_4:+63083517 Msa1169990:CDS
CAGGAGTTGCTATTGGAGCA+GGG 0.643737 7_4:+63083485 Msa1169990:intron
TGACAAATCACCAACAGCTG+AGG 0.652453 7_4:-63083314 None:intergenic
TCTTGAGCTATGGTACAACA+CGG 0.751011 7_4:+63082025 Msa1169990:CDS
GAGTTGCTATTGGAGCAGGG+TGG 0.770495 7_4:+63083488 Msa1169990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCTAAATTATATAAAAAAAT+GGG + chr7_4:63082601-63082620 Msa1169990:intron 10.0%
!! AAAGCAAAAAAAAAAAAAAA+TGG - chr7_4:63083805-63083824 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGCTTTAT+TGG + chr7_4:63083807-63083826 Msa1169990:intron 10.0%
!!! TAGTTTTAAAAGAAAAACAT+TGG + chr7_4:63081436-63081455 Msa1169990:intron 15.0%
!! CGCTAAATTATATAAAAAAA+TGG + chr7_4:63082600-63082619 Msa1169990:intron 15.0%
!! CAAAACTGTAAATATTTATA+GGG - chr7_4:63082644-63082663 None:intergenic 15.0%
!! ACAAAACTGTAAATATTTAT+AGG - chr7_4:63082645-63082664 None:intergenic 15.0%
!!! TGAGACTAATTATTTTTTTA+GGG - chr7_4:63082876-63082895 None:intergenic 15.0%
!!! ATGAGACTAATTATTTTTTT+AGG - chr7_4:63082877-63082896 None:intergenic 15.0%
!!! AATTATGTTGTTTTTTACTA+TGG + chr7_4:63083095-63083114 Msa1169990:intron 15.0%
!! ATAAGAAAAATAAAAACAGA+AGG - chr7_4:63083246-63083265 None:intergenic 15.0%
!! AAATGTTAATGTTAATTTCA+TGG - chr7_4:63083457-63083476 None:intergenic 15.0%
!!! TGAAATTAACATTAACATTT+TGG + chr7_4:63083457-63083476 Msa1169990:intron 15.0%
!!! AATATAAGTTGACCAATATT+TGG - chr7_4:63081261-63081280 None:intergenic 20.0%
!! CAACTTATATTTATTACATG+TGG + chr7_4:63081270-63081289 Msa1169990:CDS 20.0%
!! TTATATTTATTACATGTGGT+TGG + chr7_4:63081274-63081293 Msa1169990:CDS 20.0%
!!! TTCTCTAAGATATTTCTTTT+TGG + chr7_4:63081400-63081419 Msa1169990:intron 20.0%
!! CATAACATAATGTATGAAAA+GGG - chr7_4:63081504-63081523 None:intergenic 20.0%
!! ACATAACATAATGTATGAAA+AGG - chr7_4:63081505-63081524 None:intergenic 20.0%
!! TCATACATTATGTTATGTTA+CGG + chr7_4:63081507-63081526 Msa1169990:intron 20.0%
!! CATTTAACGTAATTCTTAAA+CGG - chr7_4:63081580-63081599 None:intergenic 20.0%
!! GTTGTATAATTTCAAACTAT+AGG + chr7_4:63081620-63081639 Msa1169990:intron 20.0%
!! TTAGTTATCATAACTACAAA+GGG + chr7_4:63081845-63081864 Msa1169990:intron 20.0%
!!! AATCAAGCTATTTTGTTTAT+TGG - chr7_4:63082212-63082231 None:intergenic 20.0%
!!! TTTTATATAATTTAGCGAGT+AGG - chr7_4:63082597-63082616 None:intergenic 20.0%
!!! ATTTTAAGGATCAAAAATCT+TGG + chr7_4:63082694-63082713 Msa1169990:intron 20.0%
!! TGCTGATGAAAAAATTTATA+AGG + chr7_4:63082742-63082761 Msa1169990:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + chr7_4:63082832-63082851 Msa1169990:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG + chr7_4:63082833-63082852 Msa1169990:intron 20.0%
!! AAATATCTTCGTATACTTTA+TGG - chr7_4:63082926-63082945 None:intergenic 20.0%
!!! GGTGGATTTTATATATTTTA+AGG + chr7_4:63082983-63083002 Msa1169990:intron 20.0%
!! CATAAAAAGTTCGATTAAAT+TGG + chr7_4:63083026-63083045 Msa1169990:intron 20.0%
!! TAAAAAACAACATAATTGTG+TGG - chr7_4:63083092-63083111 None:intergenic 20.0%
!!! TTATATTTTTACCACAAACA+AGG + chr7_4:63083285-63083304 Msa1169990:CDS 20.0%
!! TAACTATAATATGCTTAAGA+TGG - chr7_4:63083868-63083887 None:intergenic 20.0%
!!! AAGAATTTAATTTTCATGCA+CGG + chr7_4:63083900-63083919 Msa1169990:intron 20.0%
!!! TATGTATGTGATTTTATAAG+TGG + chr7_4:63083965-63083984 Msa1169990:intron 20.0%
!!! AACATTTTTTTATGATTCAG+TGG + chr7_4:63084003-63084022 Msa1169990:intron 20.0%
!!! ACTCCAATTTTAATTATCCT+AGG + chr7_4:63080991-63081010 Msa1169990:CDS 25.0%
! GCAATAAAAGCAAACAAAAT+TGG - chr7_4:63081069-63081088 None:intergenic 25.0%
! GAACATTATTATTGCATACT+TGG + chr7_4:63081128-63081147 Msa1169990:CDS 25.0%
! TTAACAATGAAAATCAAGCT+TGG + chr7_4:63081192-63081211 Msa1169990:CDS 25.0%
! TAACAATGAAAATCAAGCTT+GGG + chr7_4:63081193-63081212 Msa1169990:CDS 25.0%
! TGCAATGATTTCAATAAGTT+TGG + chr7_4:63081224-63081243 Msa1169990:CDS 25.0%
!!! TTTTAGCTTTACAAGATCTT+TGG + chr7_4:63081325-63081344 Msa1169990:CDS 25.0%
!! TGATTTGAAGCAAATACTAT+TGG + chr7_4:63081598-63081617 Msa1169990:intron 25.0%
! GTAGTTATGATAACTAACTA+TGG - chr7_4:63081842-63081861 None:intergenic 25.0%
! GTTAGTTATCATAACTACAA+AGG + chr7_4:63081844-63081863 Msa1169990:intron 25.0%
! TGGACAAACAATACATATAT+TGG - chr7_4:63082147-63082166 None:intergenic 25.0%
! ATACAACCAAAAACATAAAG+TGG - chr7_4:63082167-63082186 None:intergenic 25.0%
! AAGAATATTTCGACATGTTA+GGG - chr7_4:63082441-63082460 None:intergenic 25.0%
! AGTACAACTTAGATGATAAA+AGG - chr7_4:63082470-63082489 None:intergenic 25.0%
! TATCATCTAAGTTGTACTTA+TGG + chr7_4:63082472-63082491 Msa1169990:intron 25.0%
! ATCATCTAAGTTGTACTTAT+GGG + chr7_4:63082473-63082492 Msa1169990:intron 25.0%
!! AATGTTGTAGTCATTGTTTT+TGG + chr7_4:63082522-63082541 Msa1169990:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+AGG + chr7_4:63082680-63082699 Msa1169990:intron 25.0%
! TTTGATCCTTAAAATGCTTA+AGG - chr7_4:63082689-63082708 None:intergenic 25.0%
!!! AAAGTGCGATTTTATTTTGT+AGG + chr7_4:63082801-63082820 Msa1169990:intron 25.0%
!!! AAGTGCGATTTTATTTTGTA+GGG + chr7_4:63082802-63082821 Msa1169990:intron 25.0%
!! TACTTTATGGACTAAATTGA+TGG - chr7_4:63082913-63082932 None:intergenic 25.0%
! CTTAATAGTTGAGACTAAAT+TGG + chr7_4:63082962-63082981 Msa1169990:intron 25.0%
! AAAAAGTTCGATTAAATTGG+TGG + chr7_4:63083029-63083048 Msa1169990:intron 25.0%
! AATTAAGAAAGGCAAAAAGT+TGG - chr7_4:63083125-63083144 None:intergenic 25.0%
! AGATATATAGTAGTGTCTAA+TGG - chr7_4:63083662-63083681 None:intergenic 25.0%
! TTACATTGCTTCTTTATTAG+TGG + chr7_4:63083834-63083853 Msa1169990:intron 25.0%
! ATAATATGCTTAAGATGGAA+TGG - chr7_4:63083863-63083882 None:intergenic 25.0%
!! ATAATTATGTTTTCATGTGC+AGG + chr7_4:63084085-63084104 Msa1169990:intron 25.0%
TGCAAAAGAATATGGAATGA+TGG + chr7_4:63080894-63080913 Msa1169990:CDS 30.0%
GCAAAAGAATATGGAATGAT+GGG + chr7_4:63080895-63080914 Msa1169990:CDS 30.0%
GAGTATATCTTCAAAGATCA+TGG + chr7_4:63080917-63080936 Msa1169990:CDS 30.0%
TGGCCTAGGATAATTAAAAT+TGG - chr7_4:63080997-63081016 None:intergenic 30.0%
!! TTTCAATAAGTTTGGCCTTA+TGG + chr7_4:63081232-63081251 Msa1169990:CDS 30.0%
! ACCAATATTTGGAATCCATA+AGG - chr7_4:63081250-63081269 None:intergenic 30.0%
TAACATGAAACCTGAAGAAA+GGG - chr7_4:63081367-63081386 None:intergenic 30.0%
ATAACATGAAACCTGAAGAA+AGG - chr7_4:63081368-63081387 None:intergenic 30.0%
! TTTCTTCAGGTTTCATGTTA+TGG + chr7_4:63081367-63081386 Msa1169990:CDS 30.0%
GAAAAACATTGGTACCATAT+AGG + chr7_4:63081447-63081466 Msa1169990:intron 30.0%
GGTAACAATACACAAGTAAT+AGG - chr7_4:63081483-63081502 None:intergenic 30.0%
AGAGGTAAACATAGGATAAA+TGG - chr7_4:63081554-63081573 None:intergenic 30.0%
AACAAACTTGTGCTAATCTA+TGG - chr7_4:63081719-63081738 None:intergenic 30.0%
ATGTTCAACGACTTAAAGTT+AGG - chr7_4:63081998-63082017 None:intergenic 30.0%
!!! ACGGTATTGATTCTTTTAAC+AGG + chr7_4:63082044-63082063 Msa1169990:CDS 30.0%
ATGAAATGTGAACATGCAAA+AGG - chr7_4:63082120-63082139 None:intergenic 30.0%
! GTTTGTCCACTTTATGTTTT+TGG + chr7_4:63082158-63082177 Msa1169990:intron 30.0%
ATTTACAGTCTCAACATCAA+TGG + chr7_4:63082278-63082297 Msa1169990:intron 30.0%
CAAGAATATTTCGACATGTT+AGG - chr7_4:63082442-63082461 None:intergenic 30.0%
TTAAGGATCAAAAATCTTGG+TGG + chr7_4:63082697-63082716 Msa1169990:intron 30.0%
! TCTTGGTGGAAAATTTTTAC+AGG + chr7_4:63082711-63082730 Msa1169990:intron 30.0%
! CTTGGTGGAAAATTTTTACA+GGG + chr7_4:63082712-63082731 Msa1169990:intron 30.0%
ATAAGGACTAAAAATGCTGA+CGG + chr7_4:63082759-63082778 Msa1169990:intron 30.0%
! ATGCTGACGGAAAATTTTAT+AGG + chr7_4:63082772-63082791 Msa1169990:intron 30.0%
! TGCTGACGGAAAATTTTATA+GGG + chr7_4:63082773-63082792 Msa1169990:intron 30.0%
AGTCTCAACTATTAAGATAC+AGG - chr7_4:63082958-63082977 None:intergenic 30.0%
AATAGTTGAGACTAAATTGG+TGG + chr7_4:63082965-63082984 Msa1169990:intron 30.0%
CTAACACTGCAAATTAAGAA+AGG - chr7_4:63083136-63083155 None:intergenic 30.0%
TCCTTACATCATTCACAATT+GGG + chr7_4:63083218-63083237 Msa1169990:CDS 30.0%
AGTATAGAAACTGCTAATAG+AGG - chr7_4:63083340-63083359 None:intergenic 30.0%
!! CATTAACATTTTGGAAATGC+AGG + chr7_4:63083466-63083485 Msa1169990:intron 30.0%
CTATGATGTAATAACAACCT+AGG - chr7_4:63083537-63083556 None:intergenic 30.0%
! CTAGGTTGTTATTACATCAT+AGG + chr7_4:63083535-63083554 Msa1169990:CDS 30.0%
TATATCTTCTTCCTTTCTGT+AGG + chr7_4:63083675-63083694 Msa1169990:intron 30.0%
ATATCTTCTTCCTTTCTGTA+GGG + chr7_4:63083676-63083695 Msa1169990:intron 30.0%
!! ATATGGATTGGTATGTTGTT+TGG + chr7_4:63083700-63083719 Msa1169990:CDS 30.0%
TAATCAGCTACAAAACTGAT+TGG + chr7_4:63083752-63083771 Msa1169990:CDS 30.0%
AATCAGCTACAAAACTGATT+GGG + chr7_4:63083753-63083772 Msa1169990:CDS 30.0%
!! ATTTAATTTTCATGCACGGT+CGG + chr7_4:63083904-63083923 Msa1169990:intron 30.0%
! TCGGTCTAAAAAGTTTTACA+CGG + chr7_4:63083923-63083942 Msa1169990:intron 30.0%
TCGTATTAATAAGTGGTCTA+AGG + chr7_4:63084124-63084143 Msa1169990:CDS 30.0%
TATTAATAAGTGGTCTAAGG+TGG + chr7_4:63084127-63084146 Msa1169990:CDS 30.0%
GTAAATATCAATCAATCGCT+TGG - chr7_4:63084197-63084216 None:intergenic 30.0%
TGGAATTGACCAATAACCAA+TGG - chr7_4:63081049-63081068 None:intergenic 35.0%
TTGTGACTGAAGGAATGTTT+GGG - chr7_4:63081103-63081122 None:intergenic 35.0%
TTTGTGACTGAAGGAATGTT+TGG - chr7_4:63081104-63081123 None:intergenic 35.0%
CTGTTCATGTATTACTCTCT+TGG + chr7_4:63081166-63081185 Msa1169990:CDS 35.0%
AAAATCAAGCTTGGGATTGT+TGG + chr7_4:63081201-63081220 Msa1169990:CDS 35.0%
GCCTTATGGATTCCAAATAT+TGG + chr7_4:63081246-63081265 Msa1169990:CDS 35.0%
TAGGACTTAAGAGACCTATA+TGG - chr7_4:63081464-63081483 None:intergenic 35.0%
ATTATGTTATGTTACGGACG+TGG + chr7_4:63081513-63081532 Msa1169990:intron 35.0%
GTAATTCTTAAACGGACAAG+AGG - chr7_4:63081572-63081591 None:intergenic 35.0%
ACATCATAACAACTATGCAC+TGG - chr7_4:63081691-63081710 None:intergenic 35.0%
! GATTCTTTTAACAGGCAACA+TGG + chr7_4:63082052-63082071 Msa1169990:CDS 35.0%
AAATTGATGCTCCATCCATA+TGG + chr7_4:63082090-63082109 Msa1169990:CDS 35.0%
CAAAAGGATTACCATATGGA+TGG - chr7_4:63082104-63082123 None:intergenic 35.0%
CATGCAAAAGGATTACCATA+TGG - chr7_4:63082108-63082127 None:intergenic 35.0%
ATCTTAAGCGACGTAAACAA+AGG - chr7_4:63082247-63082266 None:intergenic 35.0%
TGGGAAATGATGATATCACT+TGG + chr7_4:63082302-63082321 Msa1169990:intron 35.0%
GATGATATCACTTGGTTTCA+TGG + chr7_4:63082310-63082329 Msa1169990:intron 35.0%
! TACTCTTAGTGTTGAGAAGT+GGG + chr7_4:63082394-63082413 Msa1169990:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7_4:63082675-63082694 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7_4:63082676-63082695 None:intergenic 35.0%
TTAAGGACTACTCATAGAGT+TGG + chr7_4:63083000-63083019 Msa1169990:intron 35.0%
!! CTTAATTTGCAGTGTTAGAG+TGG + chr7_4:63083138-63083157 Msa1169990:intron 35.0%
GTCCTTACATCATTCACAAT+TGG + chr7_4:63083217-63083236 Msa1169990:CDS 35.0%
ACCCAATTGTGAATGATGTA+AGG - chr7_4:63083222-63083241 None:intergenic 35.0%
GAATTAGTACCTGATAGTAC+AGG - chr7_4:63083379-63083398 None:intergenic 35.0%
ATTGTAGCATATGTGAACCT+AGG + chr7_4:63083517-63083536 Msa1169990:CDS 35.0%
TACATCATAGGTATTCCTGT+TGG + chr7_4:63083547-63083566 Msa1169990:CDS 35.0%
ACATCATAGGTATTCCTGTT+GGG + chr7_4:63083548-63083567 Msa1169990:CDS 35.0%
AGTTTACCATTTGCAAGTCA+AGG + chr7_4:63083585-63083604 Msa1169990:CDS 35.0%
AATCCATATACCCTACAGAA+AGG - chr7_4:63083689-63083708 None:intergenic 35.0%
TTTCTGTAGGGTATATGGAT+TGG + chr7_4:63083688-63083707 Msa1169990:intron 35.0%
CTCGGAATCGTATTAATAAG+TGG + chr7_4:63084117-63084136 Msa1169990:CDS 35.0%
ATGCAACTGTTTCATGATCA+GGG - chr7_4:63084154-63084173 None:intergenic 35.0%
ACACTATGTGGACAAGCATA+CGG + chr7_4:63080871-63080890 Msa1169990:CDS 40.0%
GCATACGGTGCAAAAGAATA+TGG + chr7_4:63080886-63080905 Msa1169990:CDS 40.0%
GGAGTTGTGAAGATGAATAG+TGG - chr7_4:63080976-63080995 None:intergenic 40.0%
CTTGTGCTATGGTTTCATCT+TGG - chr7_4:63081017-63081036 None:intergenic 40.0%
! TAGCAGGAACCATTGGTTAT+TGG + chr7_4:63081037-63081056 Msa1169990:CDS 40.0%
GAATGTTTGGGTAGTGAATG+AGG - chr7_4:63081091-63081110 None:intergenic 40.0%
TGGTGTTCTGATACTTGGAA+AGG + chr7_4:63081294-63081313 Msa1169990:CDS 40.0%
AACGGACAAGAGGTAAACAT+AGG - chr7_4:63081562-63081581 None:intergenic 40.0%
TAATTACTTGCGCACCATAG+AGG + chr7_4:63081647-63081666 Msa1169990:intron 40.0%
! CATTTTGCAGTCTTGAGCTA+TGG + chr7_4:63082015-63082034 Msa1169990:intron 40.0%
TCTTGAGCTATGGTACAACA+CGG + chr7_4:63082025-63082044 Msa1169990:CDS 40.0%
ACAGTCTCAACATCAATGGA+TGG + chr7_4:63082282-63082301 Msa1169990:intron 40.0%
CAGTCTCAACATCAATGGAT+GGG + chr7_4:63082283-63082302 Msa1169990:intron 40.0%
!!! CTTTTTTACCCTAAAGAGCG+TGG + chr7_4:63082359-63082378 Msa1169990:intron 40.0%
! TTTTACTGCCACGCTCTTTA+GGG - chr7_4:63082370-63082389 None:intergenic 40.0%
! GTACTCTTAGTGTTGAGAAG+TGG + chr7_4:63082393-63082412 Msa1169990:intron 40.0%
! ACTCTTAGTGTTGAGAAGTG+GGG + chr7_4:63082395-63082414 Msa1169990:intron 40.0%
TATTTCGACATGTTAGGGCA+TGG - chr7_4:63082436-63082455 None:intergenic 40.0%
CACTGCAAACTTTGCATCTT+TGG - chr7_4:63083188-63083207 None:intergenic 40.0%
! TTTTACCACAAACAAGGACG+TGG + chr7_4:63083291-63083310 Msa1169990:CDS 40.0%
AGTGTTCAACCTGTACTATC+AGG + chr7_4:63083367-63083386 Msa1169990:CDS 40.0%
ATTCCTGTTGGGATTGTTCT+TGG + chr7_4:63083559-63083578 Msa1169990:CDS 40.0%
TTACCAAGAACAATCCCAAC+AGG - chr7_4:63083565-63083584 None:intergenic 40.0%
!! TACTCACCTTGACTTGCAAA+TGG - chr7_4:63083594-63083613 None:intergenic 40.0%
CTTCCTTTCTGTAGGGTATA+TGG + chr7_4:63083683-63083702 Msa1169990:intron 40.0%
CAAAACTGATTGGGACAAAC+AGG + chr7_4:63083762-63083781 Msa1169990:CDS 40.0%
ATGTGCAGGTAACTATTGCT+CGG + chr7_4:63084099-63084118 Msa1169990:intron 40.0%
GATGCAACTGTTTCATGATC+AGG - chr7_4:63084155-63084174 None:intergenic 40.0%
GTTAGGAATGGCTAGTGCAT+TGG + chr7_4:63080846-63080865 Msa1169990:exon 45.0%
! AGTGCATTGGCAACACTATG+TGG + chr7_4:63080859-63080878 Msa1169990:CDS 45.0%
CTATGGTTTCATCTTGGCCT+AGG - chr7_4:63081011-63081030 None:intergenic 45.0%
GAAACCATAGCACAAGTAGC+AGG + chr7_4:63081021-63081040 Msa1169990:CDS 45.0%
CATTCCTTCAGTCACAAAGC+AGG + chr7_4:63081106-63081125 Msa1169990:CDS 45.0%
TGTTCCTGCTTTGTGACTGA+AGG - chr7_4:63081113-63081132 None:intergenic 45.0%
! GTGGTTGGTGTTCTGATACT+TGG + chr7_4:63081289-63081308 Msa1169990:CDS 45.0%
GAAAGGGAAAGCTTGACAAC+AGG - chr7_4:63081351-63081370 None:intergenic 45.0%
GTCAAGCTTTCCCTTTCTTC+AGG + chr7_4:63081354-63081373 Msa1169990:CDS 45.0%
GTGAACCAACACATCCTCTA+TGG - chr7_4:63081664-63081683 None:intergenic 45.0%
!! TAGAGGATGTGTTGGTTCAC+TGG + chr7_4:63081664-63081683 Msa1169990:intron 45.0%
! GTTTTACTGCCACGCTCTTT+AGG - chr7_4:63082371-63082390 None:intergenic 45.0%
TGTTGAGAAGTGGGGAATTG+TGG + chr7_4:63082403-63082422 Msa1169990:intron 45.0%
GTTGAGAAGTGGGGAATTGT+GGG + chr7_4:63082404-63082423 Msa1169990:intron 45.0%
GTTAGAGTGGCAAATGAGCT+TGG + chr7_4:63083151-63083170 Msa1169990:CDS 45.0%
GTGGCAAATGAGCTTGGAAA+AGG + chr7_4:63083157-63083176 Msa1169990:CDS 45.0%
TGACAAATCACCAACAGCTG+AGG - chr7_4:63083317-63083336 None:intergenic 45.0%
GGAAATGCAGGAGTTGCTAT+TGG + chr7_4:63083478-63083497 Msa1169990:intron 45.0%
! GGTTCCTGCTACTTGTGCTA+TGG - chr7_4:63081028-63081047 None:intergenic 50.0%
GCACAAGTAGCAGGAACCAT+TGG + chr7_4:63081030-63081049 Msa1169990:CDS 50.0%
TGTTATGTTACGGACGTGGC+AGG + chr7_4:63081517-63081536 Msa1169990:intron 50.0%
TTGGTTTCATGGCTGCAGCA+AGG + chr7_4:63082321-63082340 Msa1169990:intron 50.0%
! CAGGAGTTGCTATTGGAGCA+GGG + chr7_4:63083485-63083504 Msa1169990:intron 50.0%
GCGCACCATAGAGGATGTGT+TGG + chr7_4:63081656-63081675 Msa1169990:intron 55.0%
! TGAGGCCACGTCCTTGTTTG+TGG - chr7_4:63083299-63083318 None:intergenic 55.0%
! GCAGGAGTTGCTATTGGAGC+AGG + chr7_4:63083484-63083503 Msa1169990:intron 55.0%
! GAGTTGCTATTGGAGCAGGG+TGG + chr7_4:63083488-63083507 Msa1169990:CDS 55.0%
TTACGGACGTGGCAGGAACG+AGG + chr7_4:63081524-63081543 Msa1169990:intron 60.0%
AAGGACGTGGCCTCAGCTGT+TGG + chr7_4:63083304-63083323 Msa1169990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 63080846 63084315 63080846 ID=Msa1169990;Name=Msa1169990
chr7_4 mRNA 63080846 63084315 63080846 ID=Msa1169990-mRNA-1;Parent=Msa1169990;Name=Msa1169990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=7|0.8|1|1|1|0.83|6|131|381
chr7_4 exon 63080846 63081388 63080846 ID=Msa1169990-mRNA-1:exon:20073;Parent=Msa1169990-mRNA-1
chr7_4 exon 63082025 63082111 63082025 ID=Msa1169990-mRNA-1:exon:20074;Parent=Msa1169990-mRNA-1
chr7_4 exon 63083150 63083388 63083150 ID=Msa1169990-mRNA-1:exon:20075;Parent=Msa1169990-mRNA-1
chr7_4 exon 63083488 63083606 63083488 ID=Msa1169990-mRNA-1:exon:20076;Parent=Msa1169990-mRNA-1
chr7_4 exon 63083697 63083783 63083697 ID=Msa1169990-mRNA-1:exon:20077;Parent=Msa1169990-mRNA-1
chr7_4 exon 63084107 63084315 63084107 ID=Msa1169990-mRNA-1:exon:20078;Parent=Msa1169990-mRNA-1
chr7_4 five_prime_UTR 63080846 63080852 63080846 ID=Msa1169990-mRNA-1:five_prime_utr;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63080853 63081388 63080853 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63082025 63082111 63082025 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63083150 63083388 63083150 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63083488 63083606 63083488 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63083697 63083783 63083697 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 CDS 63084107 63084184 63084107 ID=Msa1169990-mRNA-1:cds;Parent=Msa1169990-mRNA-1
chr7_4 three_prime_UTR 63084185 63084315 63084185 ID=Msa1169990-mRNA-1:three_prime_utr;Parent=Msa1169990-mRNA-1
Gene Sequence

>Msa1169990

ATGGCTAGTGCATTGGCAACACTATGTGGACAAGCATACGGTGCAAAAGAATATGGAATGATGGGAGTATATCTTCAAAGATCATGGATAGTTTTATCTTTAACTGCACTCATTCTTCTTCCACTATTCATCTTCACAACTCCAATTTTAATTATCCTAGGCCAAGATGAAACCATAGCACAAGTAGCAGGAACCATTGGTTATTGGTCAATTCCAATTTTGTTTGCTTTTATTGCCTCATTCACTACCCAAACATTCCTTCAGTCACAAAGCAGGAACATTATTATTGCATACTTGGCAGCTTTCTCAATTTCTGTTCATGTATTACTCTCTTGGCTTTTAACAATGAAAATCAAGCTTGGGATTGTTGGTGCAATGATTTCAATAAGTTTGGCCTTATGGATTCCAAATATTGGTCAACTTATATTTATTACATGTGGTTGGTGTTCTGATACTTGGAAAGGTTTCTCATTTTTAGCTTTACAAGATCTTTGGCCTGTTGTCAAGCTTTCCCTTTCTTCAGGTTTCATGTTATGTCTTGAGCTATGGTACAACACGGTATTGATTCTTTTAACAGGCAACATGGAAAATGCAGAGATTCAAATTGATGCTCCATCCATATGTGTTAGAGTGGCAAATGAGCTTGGAAAAGGAAGTGCCAAAGATGCAAAGTTTGCAGTGAACATGATAGTCCTTACATCATTCACAATTGGGTTCCTTCTGTTTTTATTTTTCTTATTTTTTAGAGAAAGACTTGCTTATATTTTTACCACAAACAAGGACGTGGCCTCAGCTGTTGGTGATTTGTCACCTCTATTAGCAGTTTCTATACTACTAAACAGTGTTCAACCTGTACTATCAGGAGTTGCTATTGGAGCAGGGTGGCAAAGTATTGTAGCATATGTGAACCTAGGTTGTTATTACATCATAGGTATTCCTGTTGGGATTGTTCTTGGTAAAGTTTACCATTTGCAAGTCAAGGGTATATGGATTGGTATGTTGTTTGGAACACTAATGCAAACTATTATACTACTCATAATCAGCTACAAAACTGATTGGGACAAACAGGTAACTATTGCTCGGAATCGTATTAATAAGTGGTCTAAGGTGGACCCTGATCATGAAACAGTTGCATCAGATAATTAG

Protein sequence

>Msa1169990

MASALATLCGQAYGAKEYGMMGVYLQRSWIVLSLTALILLPLFIFTTPILIILGQDETIAQVAGTIGYWSIPILFAFIASFTTQTFLQSQSRNIIIAYLAAFSISVHVLLSWLLTMKIKLGIVGAMISISLALWIPNIGQLIFITCGWCSDTWKGFSFLALQDLWPVVKLSLSSGFMLCLELWYNTVLILLTGNMENAEIQIDAPSICVRVANELGKGSAKDAKFAVNMIVLTSFTIGFLLFLFFLFFRERLAYIFTTNKDVASAVGDLSPLLAVSILLNSVQPVLSGVAIGAGWQSIVAYVNLGCYYIIGIPVGIVLGKVYHLQVKGIWIGMLFGTLMQTIILLIISYKTDWDKQVTIARNRINKWSKVDPDHETVASDN*