Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0568650 | Msa0705330 | 0.878610 | 2.442711e-69 | -8.615850e-47 |
| Msa0568650 | Msa1361150 | 0.867904 | 9.699157e-66 | -8.615850e-47 |
| Msa0568650 | Msa1463840 | 0.874514 | 6.362161e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATTGTTTCGCACTTT+AGG | 0.155670 | 4_1:+70264800 | Msa0568650:CDS |
| CTGAATTGTTTCGCACTTTA+GGG | 0.222939 | 4_1:+70264801 | Msa0568650:CDS |
| TTTGCTTTGCCAACAAATTC+AGG | 0.235324 | 4_1:+70265395 | Msa0568650:CDS |
| GCGAAACAATTCAGAGAAAT+TGG | 0.287349 | 4_1:-70264792 | None:intergenic |
| TATGAAGTTCCTGAATTTGT+TGG | 0.349014 | 4_1:-70265404 | None:intergenic |
| TTCGATGTCTGCTACATAAC+GGG | 0.408530 | 4_1:+70264634 | Msa0568650:CDS |
| ATTGTTGTTGTTACCTGGAT+AGG | 0.417979 | 4_1:-70264961 | None:intergenic |
| CTTAGCAAATATGAATGCTT+TGG | 0.423101 | 4_1:-70264935 | None:intergenic |
| AAGGAGCTCTGTGAGTATAT+TGG | 0.424145 | 4_1:-70265374 | None:intergenic |
| TTGTTGTTGTTACCTGGATA+GGG | 0.439170 | 4_1:-70264960 | None:intergenic |
| ACAGCGAGAGAGGGAGAAGA+TGG | 0.439544 | 4_1:-70264547 | None:intergenic |
| CGGTGACATACCTCCCTCTC+TGG | 0.463844 | 4_1:+70264582 | Msa0568650:CDS |
| CTCGCTGTCGTCGACGGCGA+CGG | 0.470721 | 4_1:+70264562 | Msa0568650:CDS |
| AAGCAGCAGCATAAACAAAC+AGG | 0.487654 | 4_1:+70264509 | Msa0568650:five_prime_UTR |
| ATTTGCTAAGGTCCCTATCC+AGG | 0.494471 | 4_1:+70264948 | Msa0568650:CDS |
| CCCTCTCTCGCTGTCGTCGA+CGG | 0.496851 | 4_1:+70264556 | Msa0568650:CDS |
| AATCGAGCTGATTCAAACCT+TGG | 0.502888 | 4_1:-70265616 | None:intergenic |
| ATCGAAGATCTTGATTAAGA+TGG | 0.523630 | 4_1:-70264617 | None:intergenic |
| TTCAGGAACTTCATATCTGA+AGG | 0.531356 | 4_1:+70265412 | Msa0568650:CDS |
| CAAAGCATTCATATTTGCTA+AGG | 0.534098 | 4_1:+70264936 | Msa0568650:CDS |
| CTTCGATGTCTGCTACATAA+CGG | 0.537089 | 4_1:+70264633 | Msa0568650:CDS |
| CAGCGAGAGAGGGAGAAGAT+GGG | 0.551778 | 4_1:-70264546 | None:intergenic |
| TGAATTTGTTGGCAAAGCAA+AGG | 0.554064 | 4_1:-70265393 | None:intergenic |
| GATCTTGATTAAGATGGCGT+TGG | 0.561232 | 4_1:-70264611 | None:intergenic |
| TATCTGAAACACTTATTCAA+AGG | 0.571494 | 4_1:-70265644 | None:intergenic |
| TTGCACAAACACCGTTGCCA+AGG | 0.572894 | 4_1:+70265599 | Msa0568650:CDS |
| GCCGTCGACGACAGCGAGAG+AGG | 0.575432 | 4_1:-70264557 | None:intergenic |
| GAGAGAGGGAGAAGATGGGT+CGG | 0.575819 | 4_1:-70264542 | None:intergenic |
| TGAATTGTTTCGCACTTTAG+GGG | 0.577041 | 4_1:+70264802 | Msa0568650:CDS |
| TTGGCGAGAGCCAGAGAGGG+AGG | 0.580307 | 4_1:-70264592 | None:intergenic |
| CCGTCGACGACAGCGAGAGA+GGG | 0.584626 | 4_1:-70264556 | None:intergenic |
| GGCGTTGGCGAGAGCCAGAG+AGG | 0.594380 | 4_1:-70264596 | None:intergenic |
| GCTGATTCAAACCTTGGCAA+CGG | 0.626186 | 4_1:-70265610 | None:intergenic |
| GCGTTGGCGAGAGCCAGAGA+GGG | 0.631493 | 4_1:-70264595 | None:intergenic |
| AGCAGCATAAACAAACAGGA+TGG | 0.641531 | 4_1:+70264513 | Msa0568650:exon |
| AGCATAAACAAACAGGATGG+CGG | 0.647624 | 4_1:+70264516 | Msa0568650:exon |
| ATTGGCGTGTTTGATGAAGT+CGG | 0.679645 | 4_1:-70264774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATAAAAAAAAACA+TGG | - | chr4_1:70265148-70265167 | None:intergenic | 10.0% |
| !! | ACAAAAAATAAAAAAAAACA+TGG | - | chr4_1:70265148-70265167 | None:intergenic | 10.0% |
| !!! | GATTGTTGTATTATTATTTT+AGG | + | chr4_1:70264856-70264875 | Msa0568650:intron | 15.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | + | chr4_1:70265069-70265088 | Msa0568650:CDS | 15.0% |
| !!! | TTTTTTTATTTTCACTTACA+TGG | - | chr4_1:70265175-70265194 | None:intergenic | 15.0% |
| !!! | GATTGTTGTATTATTATTTT+AGG | + | chr4_1:70264856-70264875 | Msa0568650:intron | 15.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | + | chr4_1:70265069-70265088 | Msa0568650:CDS | 15.0% |
| !!! | TTTTTTTATTTTCACTTACA+TGG | - | chr4_1:70265175-70265194 | None:intergenic | 15.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | - | chr4_1:70265126-70265145 | None:intergenic | 20.0% |
| !! | AAAAAACTATAAAACAGAAG+CGG | + | chr4_1:70265191-70265210 | Msa0568650:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | + | chr4_1:70265313-70265332 | Msa0568650:intron | 20.0% |
| !! | ATTTAGTAACAATTAACATC+AGG | - | chr4_1:70265339-70265358 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTGAAAGCT+GGG | - | chr4_1:70265522-70265541 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | - | chr4_1:70265523-70265542 | None:intergenic | 20.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | - | chr4_1:70265126-70265145 | None:intergenic | 20.0% |
| !! | AAAAAACTATAAAACAGAAG+CGG | + | chr4_1:70265191-70265210 | Msa0568650:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | + | chr4_1:70265313-70265332 | Msa0568650:intron | 20.0% |
| !! | ATTTAGTAACAATTAACATC+AGG | - | chr4_1:70265339-70265358 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTGAAAGCT+GGG | - | chr4_1:70265522-70265541 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | - | chr4_1:70265523-70265542 | None:intergenic | 20.0% |
| ! | CGATGAAGAAAGTAAATAAA+TGG | - | chr4_1:70264678-70264697 | None:intergenic | 25.0% |
| ! | CATTCATTATTCCACTATTT+AGG | + | chr4_1:70264740-70264759 | Msa0568650:intron | 25.0% |
| ! | TAGTTAGTTAGTTAGTTAGT+TGG | - | chr4_1:70264891-70264910 | None:intergenic | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | + | chr4_1:70264971-70264990 | Msa0568650:intron | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | + | chr4_1:70265073-70265092 | Msa0568650:CDS | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | - | chr4_1:70265127-70265146 | None:intergenic | 25.0% |
| ! | ATTGTTACTAAATATTCTGC+AGG | + | chr4_1:70265346-70265365 | Msa0568650:intron | 25.0% |
| ! | ATAAAAGTAGAGAACAAAGA+AGG | - | chr4_1:70265451-70265470 | None:intergenic | 25.0% |
| ! | CGATGAAGAAAGTAAATAAA+TGG | - | chr4_1:70264678-70264697 | None:intergenic | 25.0% |
| ! | CATTCATTATTCCACTATTT+AGG | + | chr4_1:70264740-70264759 | Msa0568650:intron | 25.0% |
| ! | TAGTTAGTTAGTTAGTTAGT+TGG | - | chr4_1:70264891-70264910 | None:intergenic | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | + | chr4_1:70264971-70264990 | Msa0568650:intron | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | + | chr4_1:70265073-70265092 | Msa0568650:CDS | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | - | chr4_1:70265127-70265146 | None:intergenic | 25.0% |
| ! | ATTGTTACTAAATATTCTGC+AGG | + | chr4_1:70265346-70265365 | Msa0568650:intron | 25.0% |
| ! | ATAAAAGTAGAGAACAAAGA+AGG | - | chr4_1:70265451-70265470 | None:intergenic | 25.0% |
| ATCGAAGATCTTGATTAAGA+TGG | - | chr4_1:70264620-70264639 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | - | chr4_1:70264754-70264773 | None:intergenic | 30.0% | |
| TCCAATTTCGTAAGTTAAGT+TGG | + | chr4_1:70264834-70264853 | Msa0568650:intron | 30.0% | |
| TCCAACTTAACTTACGAAAT+TGG | - | chr4_1:70264838-70264857 | None:intergenic | 30.0% | |
| CAAACGTTCTTATTAGATGA+TGG | + | chr4_1:70264912-70264931 | Msa0568650:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | - | chr4_1:70264938-70264957 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | + | chr4_1:70264936-70264955 | Msa0568650:CDS | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | - | chr4_1:70264969-70264988 | None:intergenic | 30.0% |
| GGTAAGTTAGAGACATTTAT+TGG | - | chr4_1:70265023-70265042 | None:intergenic | 30.0% | |
| ACCTGTATAAATAACTATGC+AGG | + | chr4_1:70265040-70265059 | Msa0568650:intron | 30.0% | |
| ACCTGCATAGTTATTTATAC+AGG | - | chr4_1:70265044-70265063 | None:intergenic | 30.0% | |
| TGTATAAATAACTATGCAGG+TGG | + | chr4_1:70265043-70265062 | Msa0568650:intron | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | + | chr4_1:70265044-70265063 | Msa0568650:intron | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | + | chr4_1:70265045-70265064 | Msa0568650:intron | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | - | chr4_1:70265243-70265262 | None:intergenic | 30.0% | |
| AGAGATAACACCAACAATAA+CGG | - | chr4_1:70265291-70265310 | None:intergenic | 30.0% | |
| TATGAAGTTCCTGAATTTGT+TGG | - | chr4_1:70265407-70265426 | None:intergenic | 30.0% | |
| ATCGAAGATCTTGATTAAGA+TGG | - | chr4_1:70264620-70264639 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | - | chr4_1:70264754-70264773 | None:intergenic | 30.0% | |
| TCCAATTTCGTAAGTTAAGT+TGG | + | chr4_1:70264834-70264853 | Msa0568650:intron | 30.0% | |
| TCCAACTTAACTTACGAAAT+TGG | - | chr4_1:70264838-70264857 | None:intergenic | 30.0% | |
| CAAACGTTCTTATTAGATGA+TGG | + | chr4_1:70264912-70264931 | Msa0568650:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | - | chr4_1:70264938-70264957 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | + | chr4_1:70264936-70264955 | Msa0568650:CDS | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | - | chr4_1:70264969-70264988 | None:intergenic | 30.0% |
| GGTAAGTTAGAGACATTTAT+TGG | - | chr4_1:70265023-70265042 | None:intergenic | 30.0% | |
| ACCTGTATAAATAACTATGC+AGG | + | chr4_1:70265040-70265059 | Msa0568650:intron | 30.0% | |
| ACCTGCATAGTTATTTATAC+AGG | - | chr4_1:70265044-70265063 | None:intergenic | 30.0% | |
| TGTATAAATAACTATGCAGG+TGG | + | chr4_1:70265043-70265062 | Msa0568650:intron | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | + | chr4_1:70265044-70265063 | Msa0568650:intron | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | + | chr4_1:70265045-70265064 | Msa0568650:intron | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | - | chr4_1:70265243-70265262 | None:intergenic | 30.0% | |
| AGAGATAACACCAACAATAA+CGG | - | chr4_1:70265291-70265310 | None:intergenic | 30.0% | |
| TATGAAGTTCCTGAATTTGT+TGG | - | chr4_1:70265407-70265426 | None:intergenic | 30.0% | |
| GCGAAACAATTCAGAGAAAT+TGG | - | chr4_1:70264795-70264814 | None:intergenic | 35.0% | |
| TCTGAATTGTTTCGCACTTT+AGG | + | chr4_1:70264800-70264819 | Msa0568650:CDS | 35.0% | |
| CTGAATTGTTTCGCACTTTA+GGG | + | chr4_1:70264801-70264820 | Msa0568650:CDS | 35.0% | |
| TGAATTGTTTCGCACTTTAG+GGG | + | chr4_1:70264802-70264821 | Msa0568650:CDS | 35.0% | |
| ! | TTGTTGTTGTTACCTGGATA+GGG | - | chr4_1:70264963-70264982 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | - | chr4_1:70264964-70264983 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | + | chr4_1:70265079-70265098 | Msa0568650:CDS | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | - | chr4_1:70265229-70265248 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | - | chr4_1:70265230-70265249 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | - | chr4_1:70265396-70265415 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | + | chr4_1:70265395-70265414 | Msa0568650:CDS | 35.0% | |
| TTCAGGAACTTCATATCTGA+AGG | + | chr4_1:70265412-70265431 | Msa0568650:CDS | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | + | chr4_1:70265476-70265495 | Msa0568650:intron | 35.0% | |
| GCGAAACAATTCAGAGAAAT+TGG | - | chr4_1:70264795-70264814 | None:intergenic | 35.0% | |
| TCTGAATTGTTTCGCACTTT+AGG | + | chr4_1:70264800-70264819 | Msa0568650:CDS | 35.0% | |
| CTGAATTGTTTCGCACTTTA+GGG | + | chr4_1:70264801-70264820 | Msa0568650:CDS | 35.0% | |
| TGAATTGTTTCGCACTTTAG+GGG | + | chr4_1:70264802-70264821 | Msa0568650:CDS | 35.0% | |
| ! | TTGTTGTTGTTACCTGGATA+GGG | - | chr4_1:70264963-70264982 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | - | chr4_1:70264964-70264983 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | + | chr4_1:70265079-70265098 | Msa0568650:CDS | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | - | chr4_1:70265229-70265248 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | - | chr4_1:70265230-70265249 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | - | chr4_1:70265396-70265415 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | + | chr4_1:70265395-70265414 | Msa0568650:CDS | 35.0% | |
| TTCAGGAACTTCATATCTGA+AGG | + | chr4_1:70265412-70265431 | Msa0568650:CDS | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | + | chr4_1:70265476-70265495 | Msa0568650:intron | 35.0% | |
| AAGCAGCAGCATAAACAAAC+AGG | + | chr4_1:70264509-70264528 | Msa0568650:five_prime_UTR | 40.0% | |
| AGCAGCATAAACAAACAGGA+TGG | + | chr4_1:70264513-70264532 | Msa0568650:exon | 40.0% | |
| AGCATAAACAAACAGGATGG+CGG | + | chr4_1:70264516-70264535 | Msa0568650:exon | 40.0% | |
| GATCTTGATTAAGATGGCGT+TGG | - | chr4_1:70264614-70264633 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | + | chr4_1:70264633-70264652 | Msa0568650:CDS | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | + | chr4_1:70264634-70264653 | Msa0568650:CDS | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | - | chr4_1:70264777-70264796 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | + | chr4_1:70264977-70264996 | Msa0568650:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | - | chr4_1:70265220-70265239 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | - | chr4_1:70265264-70265283 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | - | chr4_1:70265323-70265342 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | - | chr4_1:70265377-70265396 | None:intergenic | 40.0% | |
| GTAGAGAACAAAGAAGGAGA+TGG | - | chr4_1:70265445-70265464 | None:intergenic | 40.0% | |
| ! | AATCGAGCTGATTCAAACCT+TGG | - | chr4_1:70265619-70265638 | None:intergenic | 40.0% |
| AAGCAGCAGCATAAACAAAC+AGG | + | chr4_1:70264509-70264528 | Msa0568650:five_prime_UTR | 40.0% | |
| AGCAGCATAAACAAACAGGA+TGG | + | chr4_1:70264513-70264532 | Msa0568650:exon | 40.0% | |
| AGCATAAACAAACAGGATGG+CGG | + | chr4_1:70264516-70264535 | Msa0568650:exon | 40.0% | |
| GATCTTGATTAAGATGGCGT+TGG | - | chr4_1:70264614-70264633 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | + | chr4_1:70264633-70264652 | Msa0568650:CDS | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | + | chr4_1:70264634-70264653 | Msa0568650:CDS | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | - | chr4_1:70264777-70264796 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | + | chr4_1:70264977-70264996 | Msa0568650:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | - | chr4_1:70265220-70265239 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | - | chr4_1:70265264-70265283 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | - | chr4_1:70265323-70265342 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | - | chr4_1:70265377-70265396 | None:intergenic | 40.0% | |
| GTAGAGAACAAAGAAGGAGA+TGG | - | chr4_1:70265445-70265464 | None:intergenic | 40.0% | |
| ! | AATCGAGCTGATTCAAACCT+TGG | - | chr4_1:70265619-70265638 | None:intergenic | 40.0% |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | + | chr4_1:70264948-70264967 | Msa0568650:CDS | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | - | chr4_1:70265265-70265284 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | + | chr4_1:70265263-70265282 | Msa0568650:intron | 45.0% | |
| ! | TAATCTCCGTTTTCACCTGC+AGG | + | chr4_1:70265564-70265583 | Msa0568650:intron | 45.0% |
| ! | AATCTCCGTTTTCACCTGCA+GGG | + | chr4_1:70265565-70265584 | Msa0568650:intron | 45.0% |
| TAAGACCCTGCAGGTGAAAA+CGG | - | chr4_1:70265573-70265592 | None:intergenic | 45.0% | |
| !! | CAATGTCTTTAAGACCCTGC+AGG | - | chr4_1:70265582-70265601 | None:intergenic | 45.0% |
| ! | GCTGATTCAAACCTTGGCAA+CGG | - | chr4_1:70265613-70265632 | None:intergenic | 45.0% |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | + | chr4_1:70264948-70264967 | Msa0568650:CDS | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | - | chr4_1:70265265-70265284 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | + | chr4_1:70265263-70265282 | Msa0568650:intron | 45.0% | |
| ! | TAATCTCCGTTTTCACCTGC+AGG | + | chr4_1:70265564-70265583 | Msa0568650:intron | 45.0% |
| ! | AATCTCCGTTTTCACCTGCA+GGG | + | chr4_1:70265565-70265584 | Msa0568650:intron | 45.0% |
| TAAGACCCTGCAGGTGAAAA+CGG | - | chr4_1:70265573-70265592 | None:intergenic | 45.0% | |
| !! | CAATGTCTTTAAGACCCTGC+AGG | - | chr4_1:70265582-70265601 | None:intergenic | 45.0% |
| ! | GCTGATTCAAACCTTGGCAA+CGG | - | chr4_1:70265613-70265632 | None:intergenic | 45.0% |
| ATAACGGCGCCAGAAGAATG+AGG | - | chr4_1:70265275-70265294 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | + | chr4_1:70265278-70265297 | Msa0568650:intron | 50.0% | |
| ! | GGGACCAGAGATGATGATGA+CGG | - | chr4_1:70265502-70265521 | None:intergenic | 50.0% |
| TTGCACAAACACCGTTGCCA+AGG | + | chr4_1:70265599-70265618 | Msa0568650:CDS | 50.0% | |
| ATAACGGCGCCAGAAGAATG+AGG | - | chr4_1:70265275-70265294 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | + | chr4_1:70265278-70265297 | Msa0568650:intron | 50.0% | |
| ! | GGGACCAGAGATGATGATGA+CGG | - | chr4_1:70265502-70265521 | None:intergenic | 50.0% |
| TTGCACAAACACCGTTGCCA+AGG | + | chr4_1:70265599-70265618 | Msa0568650:CDS | 50.0% | |
| GAGAGAGGGAGAAGATGGGT+CGG | - | chr4_1:70264545-70264564 | None:intergenic | 55.0% | |
| CAGCGAGAGAGGGAGAAGAT+GGG | - | chr4_1:70264549-70264568 | None:intergenic | 55.0% | |
| ACAGCGAGAGAGGGAGAAGA+TGG | - | chr4_1:70264550-70264569 | None:intergenic | 55.0% | |
| CTGGCCGTCATCATCATCTC+TGG | + | chr4_1:70265495-70265514 | Msa0568650:intron | 55.0% | |
| GAGAGAGGGAGAAGATGGGT+CGG | - | chr4_1:70264545-70264564 | None:intergenic | 55.0% | |
| CAGCGAGAGAGGGAGAAGAT+GGG | - | chr4_1:70264549-70264568 | None:intergenic | 55.0% | |
| ACAGCGAGAGAGGGAGAAGA+TGG | - | chr4_1:70264550-70264569 | None:intergenic | 55.0% | |
| CTGGCCGTCATCATCATCTC+TGG | + | chr4_1:70265495-70265514 | Msa0568650:intron | 55.0% | |
| CGGTGACATACCTCCCTCTC+TGG | + | chr4_1:70264582-70264601 | Msa0568650:CDS | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | - | chr4_1:70265271-70265290 | None:intergenic | 60.0% | |
| CGGTGACATACCTCCCTCTC+TGG | + | chr4_1:70264582-70264601 | Msa0568650:CDS | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | - | chr4_1:70265271-70265290 | None:intergenic | 60.0% | |
| CCGTCGACGACAGCGAGAGA+GGG | - | chr4_1:70264559-70264578 | None:intergenic | 65.0% | |
| CCCTCTCTCGCTGTCGTCGA+CGG | + | chr4_1:70264556-70264575 | Msa0568650:CDS | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | - | chr4_1:70264595-70264614 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | - | chr4_1:70264598-70264617 | None:intergenic | 65.0% |
| CCGTCGACGACAGCGAGAGA+GGG | - | chr4_1:70264559-70264578 | None:intergenic | 65.0% | |
| CCCTCTCTCGCTGTCGTCGA+CGG | + | chr4_1:70264556-70264575 | Msa0568650:CDS | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | - | chr4_1:70264595-70264614 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | - | chr4_1:70264598-70264617 | None:intergenic | 65.0% |
| GCCGTCGACGACAGCGAGAG+AGG | - | chr4_1:70264560-70264579 | None:intergenic | 70.0% | |
| CTCGCTGTCGTCGACGGCGA+CGG | + | chr4_1:70264562-70264581 | Msa0568650:CDS | 70.0% | |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | - | chr4_1:70264599-70264618 | None:intergenic | 70.0% |
| GCCGTCGACGACAGCGAGAG+AGG | - | chr4_1:70264560-70264579 | None:intergenic | 70.0% | |
| CTCGCTGTCGTCGACGGCGA+CGG | + | chr4_1:70264562-70264581 | Msa0568650:CDS | 70.0% | |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | - | chr4_1:70264599-70264618 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70264498 | 70265654 | 70264498 | ID=Msa0568650;Name=Msa0568650 |
| chr4_1 | mRNA | 70264498 | 70265654 | 70264498 | ID=Msa0568650-mRNA-1;Parent=Msa0568650;Name=Msa0568650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=34|0.8|0.66|0.83|1|1|6|0|135 |
| chr4_1 | exon | 70264498 | 70264661 | 70264498 | ID=Msa0568650-mRNA-1:exon:23625;Parent=Msa0568650-mRNA-1 |
| chr4_1 | exon | 70264762 | 70264823 | 70264762 | ID=Msa0568650-mRNA-1:exon:23626;Parent=Msa0568650-mRNA-1 |
| chr4_1 | exon | 70264928 | 70264969 | 70264928 | ID=Msa0568650-mRNA-1:exon:23627;Parent=Msa0568650-mRNA-1 |
| chr4_1 | exon | 70265062 | 70265100 | 70265062 | ID=Msa0568650-mRNA-1:exon:23628;Parent=Msa0568650-mRNA-1 |
| chr4_1 | exon | 70265368 | 70265433 | 70265368 | ID=Msa0568650-mRNA-1:exon:23629;Parent=Msa0568650-mRNA-1 |
| chr4_1 | exon | 70265586 | 70265654 | 70265586 | ID=Msa0568650-mRNA-1:exon:23630;Parent=Msa0568650-mRNA-1 |
| chr4_1 | five_prime_UTR | 70264498 | 70264531 | 70264498 | ID=Msa0568650-mRNA-1:five_prime_utr;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70264532 | 70264661 | 70264532 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70264762 | 70264823 | 70264762 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70264928 | 70264969 | 70264928 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70265062 | 70265100 | 70265062 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70265368 | 70265433 | 70265368 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| chr4_1 | CDS | 70265586 | 70265654 | 70265586 | ID=Msa0568650-mRNA-1:cds;Parent=Msa0568650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
