Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0068740 | Msa0705330 | 0.800995 | 1.109474e-48 | -8.615850e-47 |
| Msa0705330 | Msa0843780 | 0.812895 | 3.368335e-51 | -8.615850e-47 |
| Msa0705330 | Msa1335780 | 0.822753 | 2.001532e-53 | -8.615850e-47 |
| Msa0705330 | Msa1361150 | 0.829261 | 5.683743e-55 | -8.615850e-47 |
| Msa0705330 | Msa1414750 | 0.803083 | 4.129648e-49 | -8.615850e-47 |
| Msa0220740 | Msa0705330 | -0.801887 | 7.284423e-49 | -8.615850e-47 |
| Msa0568650 | Msa0705330 | 0.878610 | 2.442711e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATTGTTTCGCACTTT+AGG | 0.155670 | 4_4:-77917463 | Msa0705330:CDS |
| CTGAATTGTTTCGCACTTTA+GGG | 0.222939 | 4_4:-77917462 | Msa0705330:CDS |
| TTTGCTTTGCCAACAAATTC+AGG | 0.235324 | 4_4:-77916873 | Msa0705330:CDS |
| GCGAAACAATTCAGAGAAAT+TGG | 0.287349 | 4_4:+77917471 | None:intergenic |
| TATGAAGTTCCTGAATTTGT+TGG | 0.349014 | 4_4:+77916864 | None:intergenic |
| TTCGATGTCTGCTACATAAC+GGG | 0.408530 | 4_4:-77917604 | Msa0705330:CDS |
| ATTGTTGTTGTTACCTGGAT+AGG | 0.417979 | 4_4:+77917302 | None:intergenic |
| CTTAGCAAATATGAATGCTT+TGG | 0.423101 | 4_4:+77917328 | None:intergenic |
| AAGGAGCTCTGTGAGTATAT+TGG | 0.424145 | 4_4:+77916894 | None:intergenic |
| TTGTTGTTGTTACCTGGATA+GGG | 0.439170 | 4_4:+77917303 | None:intergenic |
| CCCTCTCTCACTGTCGTCGA+TGG | 0.478888 | 4_4:-77917682 | Msa0705330:CDS |
| CGGCGACATACCTCCCTCTC+TGG | 0.479828 | 4_4:-77917656 | Msa0705330:CDS |
| ACAGTGAGAGAGGGAGAAGA+TGG | 0.485612 | 4_4:+77917691 | None:intergenic |
| ATTTGCTAAGGTCCCTATCC+AGG | 0.494471 | 4_4:-77917315 | Msa0705330:intron |
| AATCGAGCTGATTCAAACCT+TGG | 0.502888 | 4_4:+77916658 | None:intergenic |
| GTATACAGACAGAAACAAAC+AGG | 0.522322 | 4_4:-77917729 | None:intergenic |
| ATCGAAGATCTTGATTAAGA+TGG | 0.523630 | 4_4:+77917621 | None:intergenic |
| CAAAGCATTCATATTTGCTA+AGG | 0.534098 | 4_4:-77917327 | Msa0705330:CDS |
| CTTCGATGTCTGCTACATAA+CGG | 0.537089 | 4_4:-77917605 | Msa0705330:CDS |
| TATCCGAAACACTTATTCAA+AGG | 0.547705 | 4_4:+77916630 | None:intergenic |
| TGAATTTGTTGGCAAAGCAA+AGG | 0.554064 | 4_4:+77916875 | None:intergenic |
| GAGAGAGGGAGAAGATGGAT+CGG | 0.556083 | 4_4:+77917696 | None:intergenic |
| GATCTTGATTAAGATGGCGT+TGG | 0.561232 | 4_4:+77917627 | None:intergenic |
| TTCAGGAACTTCATATCTGA+AGG | 0.561918 | 4_4:-77916856 | Msa0705330:intron |
| TTGCACAAACACCGTTGCCA+AGG | 0.572894 | 4_4:-77916675 | Msa0705330:CDS |
| TGAATTGTTTCGCACTTTAG+GGG | 0.577041 | 4_4:-77917461 | Msa0705330:intron |
| CTCACTGTCGTCGATGGCGA+CGG | 0.577286 | 4_4:-77917676 | Msa0705330:CDS |
| TTGGCGAGAGCCAGAGAGGG+AGG | 0.580307 | 4_4:+77917646 | None:intergenic |
| GGCGTTGGCGAGAGCCAGAG+AGG | 0.594380 | 4_4:+77917642 | None:intergenic |
| GCCATCGACGACAGTGAGAG+AGG | 0.621182 | 4_4:+77917681 | None:intergenic |
| CCATCGACGACAGTGAGAGA+GGG | 0.623045 | 4_4:+77917682 | None:intergenic |
| GCTGATTCAAACCTTGGCAA+CGG | 0.626186 | 4_4:+77916664 | None:intergenic |
| GCGTTGGCGAGAGCCAGAGA+GGG | 0.631493 | 4_4:+77917643 | None:intergenic |
| GACAGAAACAAACAGGATGG+CGG | 0.666568 | 4_4:-77917722 | Msa0705330:exon |
| ATTGGCGTGTTTGATGAAGT+CGG | 0.679645 | 4_4:+77917489 | None:intergenic |
| ACAGACAGAAACAAACAGGA+TGG | 0.681481 | 4_4:-77917725 | Msa0705330:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAAAATAAAAAAAACA+TGG | + | chr4_4:77917251-77917270 | None:intergenic | 10.0% |
| !! | TACAAAAAATAAAAAAAACA+TGG | + | chr4_4:77917251-77917270 | None:intergenic | 10.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | - | chr4_4:77917172-77917191 | Msa0705330:intron | 15.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | - | chr4_4:77917172-77917191 | Msa0705330:intron | 15.0% |
| !! | TGAAAAGAGAAGTAAATAAA+TGG | + | chr4_4:77916806-77916825 | None:intergenic | 20.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | + | chr4_4:77917229-77917248 | None:intergenic | 20.0% |
| !!! | AGTTTTTATTTTCACTTACA+TGG | + | chr4_4:77917277-77917296 | None:intergenic | 20.0% |
| !! | TAAAAACTATAAAACAGAAG+CGG | - | chr4_4:77917289-77917308 | Msa0705330:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | - | chr4_4:77917411-77917430 | Msa0705330:intron | 20.0% |
| !! | TAAATAAAAGTAGAGAACAA+AGG | + | chr4_4:77917549-77917568 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | + | chr4_4:77917615-77917634 | None:intergenic | 20.0% |
| !! | TGAAAAGAGAAGTAAATAAA+TGG | + | chr4_4:77916806-77916825 | None:intergenic | 20.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | + | chr4_4:77917229-77917248 | None:intergenic | 20.0% |
| !!! | AGTTTTTATTTTCACTTACA+TGG | + | chr4_4:77917277-77917296 | None:intergenic | 20.0% |
| !! | TAAAAACTATAAAACAGAAG+CGG | - | chr4_4:77917289-77917308 | Msa0705330:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | - | chr4_4:77917411-77917430 | Msa0705330:intron | 20.0% |
| !! | TAAATAAAAGTAGAGAACAA+AGG | + | chr4_4:77917549-77917568 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | + | chr4_4:77917615-77917634 | None:intergenic | 20.0% |
| ! | CATTCATTATTCCACTATTT+AGG | - | chr4_4:77916843-77916862 | Msa0705330:intron | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | - | chr4_4:77917074-77917093 | Msa0705330:intron | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | - | chr4_4:77917176-77917195 | Msa0705330:intron | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | + | chr4_4:77917230-77917249 | None:intergenic | 25.0% |
| ! | GTTTAGTAACAATTAACATC+AGG | + | chr4_4:77917437-77917456 | None:intergenic | 25.0% |
| ! | CATTCATTATTCCACTATTT+AGG | - | chr4_4:77916843-77916862 | Msa0705330:intron | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | - | chr4_4:77917074-77917093 | Msa0705330:intron | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | - | chr4_4:77917176-77917195 | Msa0705330:intron | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | + | chr4_4:77917230-77917249 | None:intergenic | 25.0% |
| ! | GTTTAGTAACAATTAACATC+AGG | + | chr4_4:77917437-77917456 | None:intergenic | 25.0% |
| ATCGAAGATCTTGATTAAGA+TGG | + | chr4_4:77916748-77916767 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | + | chr4_4:77916857-77916876 | None:intergenic | 30.0% | |
| TCGAACTTAACTTACGAAAT+TGG | + | chr4_4:77916947-77916966 | None:intergenic | 30.0% | |
| AAGAACGTTAGTTAGTTAGT+TGG | + | chr4_4:77917006-77917025 | None:intergenic | 30.0% | |
| CTAACGTTCTTATTAGATGA+TGG | - | chr4_4:77917015-77917034 | Msa0705330:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | + | chr4_4:77917041-77917060 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | - | chr4_4:77917039-77917058 | Msa0705330:intron | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | + | chr4_4:77917072-77917091 | None:intergenic | 30.0% |
| GGTAAGTTAGAGACATTTAT+TGG | + | chr4_4:77917126-77917145 | None:intergenic | 30.0% | |
| ACCTGTATAAATAACTATGC+AGG | - | chr4_4:77917143-77917162 | Msa0705330:intron | 30.0% | |
| ACCTGCATAGTTATTTATAC+AGG | + | chr4_4:77917147-77917166 | None:intergenic | 30.0% | |
| TGTATAAATAACTATGCAGG+TGG | - | chr4_4:77917146-77917165 | Msa0705330:intron | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | - | chr4_4:77917147-77917166 | Msa0705330:intron | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | - | chr4_4:77917148-77917167 | Msa0705330:intron | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | + | chr4_4:77917341-77917360 | None:intergenic | 30.0% | |
| ATTGTTACTAAACATTCTGC+AGG | - | chr4_4:77917444-77917463 | Msa0705330:intron | 30.0% | |
| TATGAAGTTCCTGAATTTGT+TGG | + | chr4_4:77917505-77917524 | None:intergenic | 30.0% | |
| ATCGAAGATCTTGATTAAGA+TGG | + | chr4_4:77916748-77916767 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | + | chr4_4:77916857-77916876 | None:intergenic | 30.0% | |
| TCGAACTTAACTTACGAAAT+TGG | + | chr4_4:77916947-77916966 | None:intergenic | 30.0% | |
| AAGAACGTTAGTTAGTTAGT+TGG | + | chr4_4:77917006-77917025 | None:intergenic | 30.0% | |
| CTAACGTTCTTATTAGATGA+TGG | - | chr4_4:77917015-77917034 | Msa0705330:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | + | chr4_4:77917041-77917060 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | - | chr4_4:77917039-77917058 | Msa0705330:intron | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | + | chr4_4:77917072-77917091 | None:intergenic | 30.0% |
| GGTAAGTTAGAGACATTTAT+TGG | + | chr4_4:77917126-77917145 | None:intergenic | 30.0% | |
| ACCTGTATAAATAACTATGC+AGG | - | chr4_4:77917143-77917162 | Msa0705330:intron | 30.0% | |
| ACCTGCATAGTTATTTATAC+AGG | + | chr4_4:77917147-77917166 | None:intergenic | 30.0% | |
| TGTATAAATAACTATGCAGG+TGG | - | chr4_4:77917146-77917165 | Msa0705330:intron | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | - | chr4_4:77917147-77917166 | Msa0705330:intron | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | - | chr4_4:77917148-77917167 | Msa0705330:intron | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | + | chr4_4:77917341-77917360 | None:intergenic | 30.0% | |
| ATTGTTACTAAACATTCTGC+AGG | - | chr4_4:77917444-77917463 | Msa0705330:intron | 30.0% | |
| TATGAAGTTCCTGAATTTGT+TGG | + | chr4_4:77917505-77917524 | None:intergenic | 30.0% | |
| GCGAAACAATTCAGAGAAAT+TGG | + | chr4_4:77916898-77916917 | None:intergenic | 35.0% | |
| TCTGAATTGTTTCGCACTTT+AGG | - | chr4_4:77916903-77916922 | Msa0705330:CDS | 35.0% | |
| CTGAATTGTTTCGCACTTTA+GGG | - | chr4_4:77916904-77916923 | Msa0705330:intron | 35.0% | |
| TGAATTGTTTCGCACTTTAG+GGG | - | chr4_4:77916905-77916924 | Msa0705330:intron | 35.0% | |
| ! | TTGTTGTTGTTACCTGGATA+GGG | + | chr4_4:77917066-77917085 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | + | chr4_4:77917067-77917086 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | - | chr4_4:77917182-77917201 | Msa0705330:intron | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | + | chr4_4:77917327-77917346 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | + | chr4_4:77917328-77917347 | None:intergenic | 35.0% | |
| CGAGATAACACCAACAATAA+CGG | + | chr4_4:77917389-77917408 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | + | chr4_4:77917494-77917513 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | - | chr4_4:77917493-77917512 | Msa0705330:CDS | 35.0% | |
| TTCAGGAACTTCATATCTGA+AGG | - | chr4_4:77917510-77917529 | Msa0705330:intron | 35.0% | |
| AAAGTAGAGAACAAAGGAGA+TGG | + | chr4_4:77917543-77917562 | None:intergenic | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | - | chr4_4:77917571-77917590 | Msa0705330:intron | 35.0% | |
| GCGAAACAATTCAGAGAAAT+TGG | + | chr4_4:77916898-77916917 | None:intergenic | 35.0% | |
| TCTGAATTGTTTCGCACTTT+AGG | - | chr4_4:77916903-77916922 | Msa0705330:CDS | 35.0% | |
| CTGAATTGTTTCGCACTTTA+GGG | - | chr4_4:77916904-77916923 | Msa0705330:intron | 35.0% | |
| TGAATTGTTTCGCACTTTAG+GGG | - | chr4_4:77916905-77916924 | Msa0705330:intron | 35.0% | |
| ! | TTGTTGTTGTTACCTGGATA+GGG | + | chr4_4:77917066-77917085 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | + | chr4_4:77917067-77917086 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | - | chr4_4:77917182-77917201 | Msa0705330:intron | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | + | chr4_4:77917327-77917346 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | + | chr4_4:77917328-77917347 | None:intergenic | 35.0% | |
| CGAGATAACACCAACAATAA+CGG | + | chr4_4:77917389-77917408 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | + | chr4_4:77917494-77917513 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | - | chr4_4:77917493-77917512 | Msa0705330:CDS | 35.0% | |
| TTCAGGAACTTCATATCTGA+AGG | - | chr4_4:77917510-77917529 | Msa0705330:intron | 35.0% | |
| AAAGTAGAGAACAAAGGAGA+TGG | + | chr4_4:77917543-77917562 | None:intergenic | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | - | chr4_4:77917571-77917590 | Msa0705330:intron | 35.0% | |
| GATCTTGATTAAGATGGCGT+TGG | + | chr4_4:77916742-77916761 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | - | chr4_4:77916761-77916780 | Msa0705330:intron | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | - | chr4_4:77916762-77916781 | Msa0705330:intron | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | + | chr4_4:77916880-77916899 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | - | chr4_4:77917080-77917099 | Msa0705330:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | + | chr4_4:77917318-77917337 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | + | chr4_4:77917362-77917381 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | + | chr4_4:77917421-77917440 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | + | chr4_4:77917475-77917494 | None:intergenic | 40.0% | |
| AGAGAACAAAGGAGATGGAA+CGG | + | chr4_4:77917538-77917557 | None:intergenic | 40.0% | |
| ! | TAATCTCCGTTTTCATCTGC+AGG | - | chr4_4:77917656-77917675 | Msa0705330:CDS | 40.0% |
| ! | AATCTCCGTTTTCATCTGCA+GGG | - | chr4_4:77917657-77917676 | Msa0705330:CDS | 40.0% |
| TAAGACCCTGCAGATGAAAA+CGG | + | chr4_4:77917665-77917684 | None:intergenic | 40.0% | |
| ! | AATCGAGCTGATTCAAACCT+TGG | + | chr4_4:77917711-77917730 | None:intergenic | 40.0% |
| GATCTTGATTAAGATGGCGT+TGG | + | chr4_4:77916742-77916761 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | - | chr4_4:77916761-77916780 | Msa0705330:intron | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | - | chr4_4:77916762-77916781 | Msa0705330:intron | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | + | chr4_4:77916880-77916899 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | - | chr4_4:77917080-77917099 | Msa0705330:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | + | chr4_4:77917318-77917337 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | + | chr4_4:77917362-77917381 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | + | chr4_4:77917421-77917440 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | + | chr4_4:77917475-77917494 | None:intergenic | 40.0% | |
| AGAGAACAAAGGAGATGGAA+CGG | + | chr4_4:77917538-77917557 | None:intergenic | 40.0% | |
| ! | TAATCTCCGTTTTCATCTGC+AGG | - | chr4_4:77917656-77917675 | Msa0705330:CDS | 40.0% |
| ! | AATCTCCGTTTTCATCTGCA+GGG | - | chr4_4:77917657-77917676 | Msa0705330:CDS | 40.0% |
| TAAGACCCTGCAGATGAAAA+CGG | + | chr4_4:77917665-77917684 | None:intergenic | 40.0% | |
| ! | AATCGAGCTGATTCAAACCT+TGG | + | chr4_4:77917711-77917730 | None:intergenic | 40.0% |
| GACAGAAACAAACAGGATGG+CGG | - | chr4_4:77916644-77916663 | Msa0705330:CDS | 45.0% | |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | - | chr4_4:77917051-77917070 | Msa0705330:intron | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | + | chr4_4:77917363-77917382 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | - | chr4_4:77917361-77917380 | Msa0705330:intron | 45.0% | |
| ! | GCTGATTCAAACCTTGGCAA+CGG | + | chr4_4:77917705-77917724 | None:intergenic | 45.0% |
| GACAGAAACAAACAGGATGG+CGG | - | chr4_4:77916644-77916663 | Msa0705330:CDS | 45.0% | |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | - | chr4_4:77917051-77917070 | Msa0705330:intron | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | + | chr4_4:77917363-77917382 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | - | chr4_4:77917361-77917380 | Msa0705330:intron | 45.0% | |
| ! | GCTGATTCAAACCTTGGCAA+CGG | + | chr4_4:77917705-77917724 | None:intergenic | 45.0% |
| !!! | TGTATTATTATTATTATTTT+AGG | - | chr4_4:77916971-77916990 | Msa0705330:intron | 5.0% |
| !!! | TGTATTATTATTATTATTTT+AGG | - | chr4_4:77916971-77916990 | Msa0705330:intron | 5.0% |
| GAGAGAGGGAGAAGATGGAT+CGG | + | chr4_4:77916673-77916692 | None:intergenic | 50.0% | |
| ACAGTGAGAGAGGGAGAAGA+TGG | + | chr4_4:77916678-77916697 | None:intergenic | 50.0% | |
| ATAACGGCGCCAGAAGAATG+AGG | + | chr4_4:77917373-77917392 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | - | chr4_4:77917376-77917395 | Msa0705330:intron | 50.0% | |
| GCTGGAACCAGAGATGATGA+CGG | + | chr4_4:77917597-77917616 | None:intergenic | 50.0% | |
| TTGCACAAACACCGTTGCCA+AGG | - | chr4_4:77917691-77917710 | Msa0705330:CDS | 50.0% | |
| GAGAGAGGGAGAAGATGGAT+CGG | + | chr4_4:77916673-77916692 | None:intergenic | 50.0% | |
| ACAGTGAGAGAGGGAGAAGA+TGG | + | chr4_4:77916678-77916697 | None:intergenic | 50.0% | |
| ATAACGGCGCCAGAAGAATG+AGG | + | chr4_4:77917373-77917392 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | - | chr4_4:77917376-77917395 | Msa0705330:intron | 50.0% | |
| GCTGGAACCAGAGATGATGA+CGG | + | chr4_4:77917597-77917616 | None:intergenic | 50.0% | |
| TTGCACAAACACCGTTGCCA+AGG | - | chr4_4:77917691-77917710 | Msa0705330:CDS | 50.0% | |
| CCATCGACGACAGTGAGAGA+GGG | + | chr4_4:77916687-77916706 | None:intergenic | 55.0% | |
| AGTCTGGCCGTCATCATCTC+TGG | - | chr4_4:77917587-77917606 | Msa0705330:intron | 55.0% | |
| CCATCGACGACAGTGAGAGA+GGG | + | chr4_4:77916687-77916706 | None:intergenic | 55.0% | |
| AGTCTGGCCGTCATCATCTC+TGG | - | chr4_4:77917587-77917606 | Msa0705330:intron | 55.0% | |
| CCCTCTCTCACTGTCGTCGA+TGG | - | chr4_4:77916684-77916703 | Msa0705330:CDS | 60.0% | |
| GCCATCGACGACAGTGAGAG+AGG | + | chr4_4:77916688-77916707 | None:intergenic | 60.0% | |
| CTCACTGTCGTCGATGGCGA+CGG | - | chr4_4:77916690-77916709 | Msa0705330:CDS | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | + | chr4_4:77917369-77917388 | None:intergenic | 60.0% | |
| CCCTCTCTCACTGTCGTCGA+TGG | - | chr4_4:77916684-77916703 | Msa0705330:CDS | 60.0% | |
| GCCATCGACGACAGTGAGAG+AGG | + | chr4_4:77916688-77916707 | None:intergenic | 60.0% | |
| CTCACTGTCGTCGATGGCGA+CGG | - | chr4_4:77916690-77916709 | Msa0705330:CDS | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | + | chr4_4:77917369-77917388 | None:intergenic | 60.0% | |
| CGGCGACATACCTCCCTCTC+TGG | - | chr4_4:77916710-77916729 | Msa0705330:intron | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | + | chr4_4:77916723-77916742 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | + | chr4_4:77916726-77916745 | None:intergenic | 65.0% |
| CGGCGACATACCTCCCTCTC+TGG | - | chr4_4:77916710-77916729 | Msa0705330:intron | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | + | chr4_4:77916723-77916742 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | + | chr4_4:77916726-77916745 | None:intergenic | 65.0% |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | + | chr4_4:77916727-77916746 | None:intergenic | 70.0% |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | + | chr4_4:77916727-77916746 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77916642 | 77917746 | 77916642 | ID=Msa0705330;Name=Msa0705330 |
| chr4_4 | mRNA | 77916642 | 77917746 | 77916642 | ID=Msa0705330-mRNA-1;Parent=Msa0705330;Name=Msa0705330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=18|0.8|0.66|0.83|1|1|6|0|135 |
| chr4_4 | exon | 77916642 | 77916710 | 77916642 | ID=Msa0705330-mRNA-1:exon:24843;Parent=Msa0705330-mRNA-1 |
| chr4_4 | exon | 77916857 | 77916922 | 77916857 | ID=Msa0705330-mRNA-1:exon:24842;Parent=Msa0705330-mRNA-1 |
| chr4_4 | exon | 77917185 | 77917223 | 77917185 | ID=Msa0705330-mRNA-1:exon:24841;Parent=Msa0705330-mRNA-1 |
| chr4_4 | exon | 77917316 | 77917357 | 77917316 | ID=Msa0705330-mRNA-1:exon:24840;Parent=Msa0705330-mRNA-1 |
| chr4_4 | exon | 77917462 | 77917523 | 77917462 | ID=Msa0705330-mRNA-1:exon:24839;Parent=Msa0705330-mRNA-1 |
| chr4_4 | exon | 77917599 | 77917746 | 77917599 | ID=Msa0705330-mRNA-1:exon:24838;Parent=Msa0705330-mRNA-1 |
| chr4_4 | five_prime_UTR | 77917729 | 77917746 | 77917729 | ID=Msa0705330-mRNA-1:five_prime_utr;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77917599 | 77917728 | 77917599 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77917462 | 77917523 | 77917462 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77917316 | 77917357 | 77917316 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77917185 | 77917223 | 77917185 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77916857 | 77916922 | 77916857 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| chr4_4 | CDS | 77916642 | 77916710 | 77916642 | ID=Msa0705330-mRNA-1:cds;Parent=Msa0705330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
