Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1361150 | Msa1463840 | 0.809921 | 1.489583e-50 | -8.615850e-47 |
| Msa0705330 | Msa1361150 | 0.829261 | 5.683743e-55 | -8.615850e-47 |
| Msa0568650 | Msa1361150 | 0.867904 | 9.699157e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAATTGTTTCGCACTTT+AGG | 0.147440 | tig0017374:-4706 | Msa1361150:CDS |
| AATTAATTAATGAGTGAAAT+TGG | 0.199681 | tig0017374:-5048 | None:intergenic |
| CTAAATTGTTTCGCACTTTA+GGG | 0.213403 | tig0017374:-4705 | Msa1361150:CDS |
| GCGAAACAATTTAGAGAAAT+TGG | 0.223102 | tig0017374:+4714 | None:intergenic |
| TTTGCTTTGCCAACAAATTC+AGG | 0.235324 | tig0017374:-4109 | Msa1361150:CDS |
| TAATGAGTGAAATTGGATTA+AGG | 0.239573 | tig0017374:-5041 | Msa1361150:CDS |
| TAAGAAGTTCCTGAATTTGT+TGG | 0.361394 | tig0017374:+4100 | None:intergenic |
| AATGAGTGAAATTGGATTAA+GGG | 0.376369 | tig0017374:-5040 | Msa1361150:CDS |
| TTCGATGTCTGCTACATAAC+GGG | 0.408530 | tig0017374:-4877 | Msa1361150:CDS |
| AAGGAGCTCTGTGAGTATAT+TGG | 0.424145 | tig0017374:+4130 | None:intergenic |
| GACAGCGAAGAGGGAGAAGA+TGG | 0.446685 | tig0017374:+4963 | None:intergenic |
| CGGTGACATACCTCCCTCTC+TGG | 0.463844 | tig0017374:-4929 | Msa1361150:CDS |
| AGCAAGCAGCATAAACAAAC+AGG | 0.470230 | tig0017374:-5001 | Msa1361150:CDS |
| TTCAGGAACTTCTTATCTGA+AGG | 0.497370 | tig0017374:-4092 | Msa1361150:intron |
| TTCGCTGTCGTCGACGGCGA+CGG | 0.503296 | tig0017374:-4949 | Msa1361150:CDS |
| AATAGAGCTGATTCAAACCT+TGG | 0.505016 | tig0017374:+3888 | None:intergenic |
| ATGAGTGAAATTGGATTAAG+GGG | 0.522813 | tig0017374:-5039 | Msa1361150:CDS |
| ATCGAAGATCTTGATTAAGA+TGG | 0.523630 | tig0017374:+4894 | None:intergenic |
| TCCCTCTTCGCTGTCGTCGA+CGG | 0.529412 | tig0017374:-4955 | Msa1361150:CDS |
| CTTCGATGTCTGCTACATAA+CGG | 0.537089 | tig0017374:-4878 | Msa1361150:CDS |
| CGAAGAGGGAGAAGATGGGT+CGG | 0.544667 | tig0017374:+4968 | None:intergenic |
| TGAATTTGTTGGCAAAGCAA+AGG | 0.554064 | tig0017374:+4111 | None:intergenic |
| GCCGTCGACGACAGCGAAGA+GGG | 0.560682 | tig0017374:+4954 | None:intergenic |
| GATCTTGATTAAGATGGCGT+TGG | 0.561232 | tig0017374:+4900 | None:intergenic |
| TATCTGAAACACTTATTCAA+AGG | 0.571494 | tig0017374:+3860 | None:intergenic |
| TTGCACAAACACCGTTGCCA+AGG | 0.572894 | tig0017374:-3905 | Msa1361150:CDS |
| TTGGCGAGAGCCAGAGAGGG+AGG | 0.580307 | tig0017374:+4919 | None:intergenic |
| TAAATTGTTTCGCACTTTAG+GGG | 0.593968 | tig0017374:-4704 | Msa1361150:intron |
| GGCGTTGGCGAGAGCCAGAG+AGG | 0.594380 | tig0017374:+4915 | None:intergenic |
| ACAGCGAAGAGGGAGAAGAT+GGG | 0.596439 | tig0017374:+4964 | None:intergenic |
| CGCCGTCGACGACAGCGAAG+AGG | 0.605853 | tig0017374:+4953 | None:intergenic |
| GCGTTGGCGAGAGCCAGAGA+GGG | 0.631493 | tig0017374:+4916 | None:intergenic |
| TGAGTGAAATTGGATTAAGG+GGG | 0.633361 | tig0017374:-5038 | Msa1361150:CDS |
| GCTGATTCAAACCTTGGCAA+CGG | 0.634575 | tig0017374:+3894 | None:intergenic |
| AGCATAAACAAACAGGATGG+CGG | 0.640804 | tig0017374:-4994 | Msa1361150:CDS |
| AGCAGCATAAACAAACAGGA+TGG | 0.641531 | tig0017374:-4997 | Msa1361150:CDS |
| GAGTGAAATTGGATTAAGGG+GGG | 0.652414 | tig0017374:-5037 | Msa1361150:CDS |
| ATTGGCGTGTTTGATGAAGT+CGG | 0.679645 | tig0017374:+4732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTGTTGTATTATTATTTT+AGG | - | tig0017374:4261-4280 | Msa1361150:intron | 15.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | - | tig0017374:4466-4485 | Msa1361150:intron | 15.0% |
| !!! | TATTTTTATTTTCACTTACA+TGG | + | tig0017374:4577-4596 | None:intergenic | 15.0% |
| !!! | GATTGTTGTATTATTATTTT+AGG | - | tig0017374:4261-4280 | Msa1361150:intron | 15.0% |
| !!! | ATACAATGTATTTTTGTAAT+CGG | - | tig0017374:4466-4485 | Msa1361150:intron | 15.0% |
| !!! | TATTTTTATTTTCACTTACA+TGG | + | tig0017374:4577-4596 | None:intergenic | 15.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | + | tig0017374:4523-4542 | None:intergenic | 20.0% |
| !! | AAAAAACTATAAAACAGAAG+CGG | - | tig0017374:4598-4617 | Msa1361150:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | - | tig0017374:4720-4739 | Msa1361150:CDS | 20.0% |
| !! | ATTTAGTAACAATTAACATC+AGG | + | tig0017374:4746-4765 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTGAAAGCT+GGG | + | tig0017374:4929-4948 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | + | tig0017374:4930-4949 | None:intergenic | 20.0% |
| !!! | GTATTAGTTTGAAATTGAAA+GGG | + | tig0017374:4523-4542 | None:intergenic | 20.0% |
| !! | AAAAAACTATAAAACAGAAG+CGG | - | tig0017374:4598-4617 | Msa1361150:intron | 20.0% |
| !!! | TATTTTTCCTGTTTAGATAA+TGG | - | tig0017374:4720-4739 | Msa1361150:CDS | 20.0% |
| !! | ATTTAGTAACAATTAACATC+AGG | + | tig0017374:4746-4765 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTGAAAGCT+GGG | + | tig0017374:4929-4948 | None:intergenic | 20.0% |
| !!! | TTACTAATAATTTTGAAAGC+TGG | + | tig0017374:4930-4949 | None:intergenic | 20.0% |
| ! | CGATGAAGAAAGTAAATAAA+TGG | + | tig0017374:4078-4097 | None:intergenic | 25.0% |
| ! | CATTCATTATTCCACTATTT+AGG | - | tig0017374:4145-4164 | Msa1361150:intron | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | - | tig0017374:4368-4387 | Msa1361150:intron | 25.0% |
| ! | AGTAAGTTAGAGACATTTAT+TGG | + | tig0017374:4420-4439 | None:intergenic | 25.0% |
| ! | ACTTGTATAAATAACTATGC+AGG | - | tig0017374:4437-4456 | Msa1361150:CDS | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | - | tig0017374:4470-4489 | Msa1361150:intron | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | + | tig0017374:4524-4543 | None:intergenic | 25.0% |
| ! | ATTGTTACTAAATATTCTGC+AGG | - | tig0017374:4753-4772 | Msa1361150:intron | 25.0% |
| ! | ATAAAAGTAGAGAACAAAGA+AGG | + | tig0017374:4858-4877 | None:intergenic | 25.0% |
| ! | CGATGAAGAAAGTAAATAAA+TGG | + | tig0017374:4078-4097 | None:intergenic | 25.0% |
| ! | CATTCATTATTCCACTATTT+AGG | - | tig0017374:4145-4164 | Msa1361150:intron | 25.0% |
| ! | TAACAACAACAATAACAAAC+TGG | - | tig0017374:4368-4387 | Msa1361150:intron | 25.0% |
| ! | AGTAAGTTAGAGACATTTAT+TGG | + | tig0017374:4420-4439 | None:intergenic | 25.0% |
| ! | ACTTGTATAAATAACTATGC+AGG | - | tig0017374:4437-4456 | Msa1361150:CDS | 25.0% |
| !!! | AATGTATTTTTGTAATCGGA+AGG | - | tig0017374:4470-4489 | Msa1361150:intron | 25.0% |
| !! | GGTATTAGTTTGAAATTGAA+AGG | + | tig0017374:4524-4543 | None:intergenic | 25.0% |
| ! | ATTGTTACTAAATATTCTGC+AGG | - | tig0017374:4753-4772 | Msa1361150:intron | 25.0% |
| ! | ATAAAAGTAGAGAACAAAGA+AGG | + | tig0017374:4858-4877 | None:intergenic | 25.0% |
| ATGAGTGAAATTGGATTAAG+GGG | - | tig0017374:3872-3891 | Msa1361150:CDS | 30.0% | |
| ATCGAAGATCTTGATTAAGA+TGG | + | tig0017374:4020-4039 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | + | tig0017374:4159-4178 | None:intergenic | 30.0% | |
| GCGAAACAATTTAGAGAAAT+TGG | + | tig0017374:4200-4219 | None:intergenic | 30.0% | |
| TCTAAATTGTTTCGCACTTT+AGG | - | tig0017374:4205-4224 | Msa1361150:intron | 30.0% | |
| CTAAATTGTTTCGCACTTTA+GGG | - | tig0017374:4206-4225 | Msa1361150:intron | 30.0% | |
| TAAATTGTTTCGCACTTTAG+GGG | - | tig0017374:4207-4226 | Msa1361150:intron | 30.0% | |
| ACGTTAGTTAGTTAGTTAGT+TGG | + | tig0017374:4296-4315 | None:intergenic | 30.0% | |
| CTAACGTTCTTATTAGATGA+TGG | - | tig0017374:4309-4328 | Msa1361150:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | + | tig0017374:4335-4354 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | - | tig0017374:4333-4352 | Msa1361150:intron | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | + | tig0017374:4366-4385 | None:intergenic | 30.0% |
| TGTATAAATAACTATGCAGG+TGG | - | tig0017374:4440-4459 | Msa1361150:CDS | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | - | tig0017374:4441-4460 | Msa1361150:CDS | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | - | tig0017374:4442-4461 | Msa1361150:CDS | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | + | tig0017374:4650-4669 | None:intergenic | 30.0% | |
| AGAGATAACACCAACAATAA+CGG | + | tig0017374:4698-4717 | None:intergenic | 30.0% | |
| TAAGAAGTTCCTGAATTTGT+TGG | + | tig0017374:4814-4833 | None:intergenic | 30.0% | |
| ATGAGTGAAATTGGATTAAG+GGG | - | tig0017374:3872-3891 | Msa1361150:CDS | 30.0% | |
| ATCGAAGATCTTGATTAAGA+TGG | + | tig0017374:4020-4039 | None:intergenic | 30.0% | |
| TGATCAAGTAACCTAAATAG+TGG | + | tig0017374:4159-4178 | None:intergenic | 30.0% | |
| GCGAAACAATTTAGAGAAAT+TGG | + | tig0017374:4200-4219 | None:intergenic | 30.0% | |
| TCTAAATTGTTTCGCACTTT+AGG | - | tig0017374:4205-4224 | Msa1361150:intron | 30.0% | |
| CTAAATTGTTTCGCACTTTA+GGG | - | tig0017374:4206-4225 | Msa1361150:intron | 30.0% | |
| TAAATTGTTTCGCACTTTAG+GGG | - | tig0017374:4207-4226 | Msa1361150:intron | 30.0% | |
| ACGTTAGTTAGTTAGTTAGT+TGG | + | tig0017374:4296-4315 | None:intergenic | 30.0% | |
| CTAACGTTCTTATTAGATGA+TGG | - | tig0017374:4309-4328 | Msa1361150:intron | 30.0% | |
| CTTAGCAAATATGAATGCTT+TGG | + | tig0017374:4335-4354 | None:intergenic | 30.0% | |
| ! | CAAAGCATTCATATTTGCTA+AGG | - | tig0017374:4333-4352 | Msa1361150:intron | 30.0% |
| ! | TTGTTATTGTTGTTGTTACC+TGG | + | tig0017374:4366-4385 | None:intergenic | 30.0% |
| TGTATAAATAACTATGCAGG+TGG | - | tig0017374:4440-4459 | Msa1361150:CDS | 30.0% | |
| GTATAAATAACTATGCAGGT+GGG | - | tig0017374:4441-4460 | Msa1361150:CDS | 30.0% | |
| TATAAATAACTATGCAGGTG+GGG | - | tig0017374:4442-4461 | Msa1361150:CDS | 30.0% | |
| GGCATTGTAATTTAAAAGTG+AGG | + | tig0017374:4650-4669 | None:intergenic | 30.0% | |
| AGAGATAACACCAACAATAA+CGG | + | tig0017374:4698-4717 | None:intergenic | 30.0% | |
| TAAGAAGTTCCTGAATTTGT+TGG | + | tig0017374:4814-4833 | None:intergenic | 30.0% | |
| TGAGTGAAATTGGATTAAGG+GGG | - | tig0017374:3873-3892 | Msa1361150:CDS | 35.0% | |
| TCCAATTTCGCAAGTTAAGT+TGG | - | tig0017374:4239-4258 | Msa1361150:intron | 35.0% | |
| !! | TCCAACTTAACTTGCGAAAT+TGG | + | tig0017374:4243-4262 | None:intergenic | 35.0% |
| ! | TTGTTGTTGTTACCTGGATA+GGG | + | tig0017374:4360-4379 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | + | tig0017374:4361-4380 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | - | tig0017374:4476-4495 | Msa1361150:intron | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | + | tig0017374:4636-4655 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | + | tig0017374:4637-4656 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | + | tig0017374:4803-4822 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | - | tig0017374:4802-4821 | Msa1361150:intron | 35.0% | |
| TTCAGGAACTTCTTATCTGA+AGG | - | tig0017374:4819-4838 | Msa1361150:intron | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | - | tig0017374:4883-4902 | Msa1361150:CDS | 35.0% | |
| ! | AATAGAGCTGATTCAAACCT+TGG | + | tig0017374:5026-5045 | None:intergenic | 35.0% |
| TGAGTGAAATTGGATTAAGG+GGG | - | tig0017374:3873-3892 | Msa1361150:CDS | 35.0% | |
| TCCAATTTCGCAAGTTAAGT+TGG | - | tig0017374:4239-4258 | Msa1361150:intron | 35.0% | |
| !! | TCCAACTTAACTTGCGAAAT+TGG | + | tig0017374:4243-4262 | None:intergenic | 35.0% |
| ! | TTGTTGTTGTTACCTGGATA+GGG | + | tig0017374:4360-4379 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGTTACCTGGAT+AGG | + | tig0017374:4361-4380 | None:intergenic | 35.0% |
| ! | TTTTTGTAATCGGAAGGAGA+AGG | - | tig0017374:4476-4495 | Msa1361150:intron | 35.0% |
| AAAGTGAGGTGCAAATGTAA+GGG | + | tig0017374:4636-4655 | None:intergenic | 35.0% | |
| AAAAGTGAGGTGCAAATGTA+AGG | + | tig0017374:4637-4656 | None:intergenic | 35.0% | |
| !! | TGAATTTGTTGGCAAAGCAA+AGG | + | tig0017374:4803-4822 | None:intergenic | 35.0% |
| TTTGCTTTGCCAACAAATTC+AGG | - | tig0017374:4802-4821 | Msa1361150:intron | 35.0% | |
| TTCAGGAACTTCTTATCTGA+AGG | - | tig0017374:4819-4838 | Msa1361150:intron | 35.0% | |
| TTTCTATCTCGTAACAAGTC+TGG | - | tig0017374:4883-4902 | Msa1361150:CDS | 35.0% | |
| ! | AATAGAGCTGATTCAAACCT+TGG | + | tig0017374:5026-5045 | None:intergenic | 35.0% |
| GAGTGAAATTGGATTAAGGG+GGG | - | tig0017374:3874-3893 | Msa1361150:CDS | 40.0% | |
| AGCAAGCAGCATAAACAAAC+AGG | - | tig0017374:3910-3929 | Msa1361150:CDS | 40.0% | |
| AGCAGCATAAACAAACAGGA+TGG | - | tig0017374:3914-3933 | Msa1361150:CDS | 40.0% | |
| AGCATAAACAAACAGGATGG+CGG | - | tig0017374:3917-3936 | Msa1361150:CDS | 40.0% | |
| GATCTTGATTAAGATGGCGT+TGG | + | tig0017374:4014-4033 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | - | tig0017374:4033-4052 | Msa1361150:intron | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | - | tig0017374:4034-4053 | Msa1361150:intron | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | + | tig0017374:4182-4201 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | - | tig0017374:4374-4393 | Msa1361150:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | + | tig0017374:4627-4646 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | + | tig0017374:4671-4690 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | + | tig0017374:4730-4749 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | + | tig0017374:4784-4803 | None:intergenic | 40.0% | |
| GTAGAGAACAAAGAAGGAGA+TGG | + | tig0017374:4852-4871 | None:intergenic | 40.0% | |
| GAGTGAAATTGGATTAAGGG+GGG | - | tig0017374:3874-3893 | Msa1361150:CDS | 40.0% | |
| AGCAAGCAGCATAAACAAAC+AGG | - | tig0017374:3910-3929 | Msa1361150:CDS | 40.0% | |
| AGCAGCATAAACAAACAGGA+TGG | - | tig0017374:3914-3933 | Msa1361150:CDS | 40.0% | |
| AGCATAAACAAACAGGATGG+CGG | - | tig0017374:3917-3936 | Msa1361150:CDS | 40.0% | |
| GATCTTGATTAAGATGGCGT+TGG | + | tig0017374:4014-4033 | None:intergenic | 40.0% | |
| CTTCGATGTCTGCTACATAA+CGG | - | tig0017374:4033-4052 | Msa1361150:intron | 40.0% | |
| TTCGATGTCTGCTACATAAC+GGG | - | tig0017374:4034-4053 | Msa1361150:intron | 40.0% | |
| ATTGGCGTGTTTGATGAAGT+CGG | + | tig0017374:4182-4201 | None:intergenic | 40.0% | |
| CAACAATAACAAACTGGCTG+TGG | - | tig0017374:4374-4393 | Msa1361150:intron | 40.0% | |
| ! | TGCAAATGTAAGGGCATGTT+TGG | + | tig0017374:4627-4646 | None:intergenic | 40.0% |
| !! | AGAAGAATGAGGAAGGTGTT+GGG | + | tig0017374:4671-4690 | None:intergenic | 40.0% |
| CATCAGGCCATTATCTAAAC+AGG | + | tig0017374:4730-4749 | None:intergenic | 40.0% | |
| AAGGAGCTCTGTGAGTATAT+TGG | + | tig0017374:4784-4803 | None:intergenic | 40.0% | |
| GTAGAGAACAAAGAAGGAGA+TGG | + | tig0017374:4852-4871 | None:intergenic | 40.0% | |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | - | tig0017374:4345-4364 | Msa1361150:intron | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | + | tig0017374:4672-4691 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | - | tig0017374:4670-4689 | Msa1361150:intron | 45.0% | |
| ! | TAATCTCCGTTTTCACCTGC+AGG | - | tig0017374:4971-4990 | Msa1361150:CDS | 45.0% |
| ! | AATCTCCGTTTTCACCTGCA+GGG | - | tig0017374:4972-4991 | Msa1361150:CDS | 45.0% |
| TAAGACCCTGCAGGTGAAAA+CGG | + | tig0017374:4980-4999 | None:intergenic | 45.0% | |
| !! | CAATGTCTTTAAGACCCTGC+AGG | + | tig0017374:4989-5008 | None:intergenic | 45.0% |
| ! | GCTGATTCAAACCTTGGCAA+CGG | + | tig0017374:5020-5039 | None:intergenic | 45.0% |
| ! | ATTTGCTAAGGTCCCTATCC+AGG | - | tig0017374:4345-4364 | Msa1361150:intron | 45.0% |
| ! | CAGAAGAATGAGGAAGGTGT+TGG | + | tig0017374:4672-4691 | None:intergenic | 45.0% |
| CAACACCTTCCTCATTCTTC+TGG | - | tig0017374:4670-4689 | Msa1361150:intron | 45.0% | |
| ! | TAATCTCCGTTTTCACCTGC+AGG | - | tig0017374:4971-4990 | Msa1361150:CDS | 45.0% |
| ! | AATCTCCGTTTTCACCTGCA+GGG | - | tig0017374:4972-4991 | Msa1361150:CDS | 45.0% |
| TAAGACCCTGCAGGTGAAAA+CGG | + | tig0017374:4980-4999 | None:intergenic | 45.0% | |
| !! | CAATGTCTTTAAGACCCTGC+AGG | + | tig0017374:4989-5008 | None:intergenic | 45.0% |
| ! | GCTGATTCAAACCTTGGCAA+CGG | + | tig0017374:5020-5039 | None:intergenic | 45.0% |
| !! | AAATTAAAAAAAAAAAAACA+TGG | + | tig0017374:4545-4564 | None:intergenic | 5.0% |
| !! | AAATTAAAAAAAAAAAAACA+TGG | + | tig0017374:4545-4564 | None:intergenic | 5.0% |
| ACAGCGAAGAGGGAGAAGAT+GGG | + | tig0017374:3950-3969 | None:intergenic | 50.0% | |
| ATAACGGCGCCAGAAGAATG+AGG | + | tig0017374:4682-4701 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | - | tig0017374:4685-4704 | Msa1361150:intron | 50.0% | |
| ! | GGGACCAGAGATGATGATGA+CGG | + | tig0017374:4909-4928 | None:intergenic | 50.0% |
| TTGCACAAACACCGTTGCCA+AGG | - | tig0017374:5006-5025 | Msa1361150:CDS | 50.0% | |
| ACAGCGAAGAGGGAGAAGAT+GGG | + | tig0017374:3950-3969 | None:intergenic | 50.0% | |
| ATAACGGCGCCAGAAGAATG+AGG | + | tig0017374:4682-4701 | None:intergenic | 50.0% | |
| TCTTCTGGCGCCGTTATTGT+TGG | - | tig0017374:4685-4704 | Msa1361150:intron | 50.0% | |
| ! | GGGACCAGAGATGATGATGA+CGG | + | tig0017374:4909-4928 | None:intergenic | 50.0% |
| TTGCACAAACACCGTTGCCA+AGG | - | tig0017374:5006-5025 | Msa1361150:CDS | 50.0% | |
| CGAAGAGGGAGAAGATGGGT+CGG | + | tig0017374:3946-3965 | None:intergenic | 55.0% | |
| GACAGCGAAGAGGGAGAAGA+TGG | + | tig0017374:3951-3970 | None:intergenic | 55.0% | |
| CTGGCCGTCATCATCATCTC+TGG | - | tig0017374:4902-4921 | Msa1361150:CDS | 55.0% | |
| CGAAGAGGGAGAAGATGGGT+CGG | + | tig0017374:3946-3965 | None:intergenic | 55.0% | |
| GACAGCGAAGAGGGAGAAGA+TGG | + | tig0017374:3951-3970 | None:intergenic | 55.0% | |
| CTGGCCGTCATCATCATCTC+TGG | - | tig0017374:4902-4921 | Msa1361150:CDS | 55.0% | |
| TCCCTCTTCGCTGTCGTCGA+CGG | - | tig0017374:3956-3975 | Msa1361150:intron | 60.0% | |
| CGGTGACATACCTCCCTCTC+TGG | - | tig0017374:3982-4001 | Msa1361150:intron | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | + | tig0017374:4678-4697 | None:intergenic | 60.0% | |
| TCCCTCTTCGCTGTCGTCGA+CGG | - | tig0017374:3956-3975 | Msa1361150:intron | 60.0% | |
| CGGTGACATACCTCCCTCTC+TGG | - | tig0017374:3982-4001 | Msa1361150:intron | 60.0% | |
| CGGCGCCAGAAGAATGAGGA+AGG | + | tig0017374:4678-4697 | None:intergenic | 60.0% | |
| GCCGTCGACGACAGCGAAGA+GGG | + | tig0017374:3960-3979 | None:intergenic | 65.0% | |
| TTCGCTGTCGTCGACGGCGA+CGG | - | tig0017374:3962-3981 | Msa1361150:intron | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | + | tig0017374:3995-4014 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | + | tig0017374:3998-4017 | None:intergenic | 65.0% |
| GCCGTCGACGACAGCGAAGA+GGG | + | tig0017374:3960-3979 | None:intergenic | 65.0% | |
| TTCGCTGTCGTCGACGGCGA+CGG | - | tig0017374:3962-3981 | Msa1361150:intron | 65.0% | |
| TTGGCGAGAGCCAGAGAGGG+AGG | + | tig0017374:3995-4014 | None:intergenic | 65.0% | |
| ! | GCGTTGGCGAGAGCCAGAGA+GGG | + | tig0017374:3998-4017 | None:intergenic | 65.0% |
| CGCCGTCGACGACAGCGAAG+AGG | + | tig0017374:3961-3980 | None:intergenic | 70.0% | |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | + | tig0017374:3999-4018 | None:intergenic | 70.0% |
| CGCCGTCGACGACAGCGAAG+AGG | + | tig0017374:3961-3980 | None:intergenic | 70.0% | |
| !! | GGCGTTGGCGAGAGCCAGAG+AGG | + | tig0017374:3999-4018 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017374 | gene | 3872 | 5061 | 3872 | ID=Msa1361150;Name=Msa1361150 |
| tig0017374 | mRNA | 3872 | 5061 | 3872 | ID=Msa1361150-mRNA-1;Parent=Msa1361150;Name=Msa1361150-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.2|0.8|0.75|1|5|0|141 |
| tig0017374 | exon | 4872 | 5061 | 4872 | ID=Msa1361150-mRNA-1:exon:12307;Parent=Msa1361150-mRNA-1 |
| tig0017374 | exon | 4705 | 4766 | 4705 | ID=Msa1361150-mRNA-1:exon:12306;Parent=Msa1361150-mRNA-1 |
| tig0017374 | exon | 4436 | 4474 | 4436 | ID=Msa1361150-mRNA-1:exon:12305;Parent=Msa1361150-mRNA-1 |
| tig0017374 | exon | 4093 | 4158 | 4093 | ID=Msa1361150-mRNA-1:exon:12304;Parent=Msa1361150-mRNA-1 |
| tig0017374 | exon | 3872 | 3940 | 3872 | ID=Msa1361150-mRNA-1:exon:12303;Parent=Msa1361150-mRNA-1 |
| tig0017374 | CDS | 4872 | 5061 | 4872 | ID=Msa1361150-mRNA-1:cds;Parent=Msa1361150-mRNA-1 |
| tig0017374 | CDS | 4705 | 4766 | 4705 | ID=Msa1361150-mRNA-1:cds;Parent=Msa1361150-mRNA-1 |
| tig0017374 | CDS | 4436 | 4474 | 4436 | ID=Msa1361150-mRNA-1:cds;Parent=Msa1361150-mRNA-1 |
| tig0017374 | CDS | 4093 | 4158 | 4093 | ID=Msa1361150-mRNA-1:cds;Parent=Msa1361150-mRNA-1 |
| tig0017374 | CDS | 3872 | 3940 | 3872 | ID=Msa1361150-mRNA-1:cds;Parent=Msa1361150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
