AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568830 MtrunA17_Chr5g0410931 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr5g0410951 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr8g0383851 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr8g0383781 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr8g0390361 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr2g0295191 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr7g0237661 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr4g0033041 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr7g0218971 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr4g0046301 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr8g0364801 100.000 110 0 0 1 110 1 110 2.94e-74 220
Msa0568830 MtrunA17_Chr4g0054151 96.364 110 4 0 1 110 4 113 4.60e-71 212
Msa0568830 MtrunA17_Chr4g0054161 96.364 110 4 0 1 110 1 110 4.71e-71 212
Msa0568830 MtrunA17_Chr8g0363741 96.364 110 4 0 1 110 1 110 4.71e-71 212
Msa0568830 MtrunA17_Chr1g0156021 96.364 110 4 0 1 110 1 110 4.71e-71 212
Msa0568830 MtrunA17_Chr8g0388121 95.455 110 5 0 1 110 1 110 1.87e-70 210
Msa0568830 MtrunA17_Chr2g0319141 90.000 110 11 0 1 110 1 110 1.41e-66 200
Msa0568830 MtrunA17_Chr2g0319151 90.000 110 11 0 1 110 1 110 1.41e-66 200
Msa0568830 MtrunA17_Chr2g0319131 82.500 120 11 1 1 110 1 120 1.26e-60 186
Msa0568830 MtrunA17_Chr2g0319121 81.982 111 18 2 1 110 1 110 1.04e-54 170
Msa0568830 MtrunA17_Chr4g0048711 84.783 92 9 1 111 197 97 188 5.45e-50 166
Msa0568830 MtrunA17_Chr4g0048711 75.789 95 18 1 108 197 251 345 1.54e-43 149
Msa0568830 MtrunA17_Chr7g0218961 87.209 86 11 0 25 110 2 87 9.44e-48 152
Msa0568830 MtrunA17_Chr4g0048731 81.522 92 12 1 111 197 214 305 8.41e-47 157
Msa0568830 MtrunA17_Chr4g0048661 78.261 92 15 1 111 197 205 296 7.11e-46 154
Msa0568830 MtrunA17_Chr4g0048791 80.435 92 13 1 111 197 700 791 2.53e-44 157
Msa0568830 MtrunA17_Chr4g0048781 71.739 92 21 1 111 197 156 247 1.82e-41 142
Msa0568830 MtrunA17_Chr4g0048741 76.087 92 17 1 111 197 700 791 1.85e-41 149
Msa0568830 MtrunA17_Chr4g0048641 69.608 102 21 2 101 197 621 717 6.02e-41 147
Msa0568830 MtrunA17_Chr4g0048681 76.087 92 17 1 111 197 448 539 5.05e-40 143
Msa0568830 MtrunA17_Chr7g0240791 100.000 66 0 0 1 66 1 66 1.14e-39 133
Msa0568830 MtrunA17_Chr5g0407311 65.455 110 35 2 1 110 1 107 5.74e-39 129
Msa0568830 MtrunA17_Chr7g0222991 62.727 110 40 1 1 110 10 118 3.76e-37 126
Msa0568830 MtrunA17_Chr4g0048801 49.074 108 45 2 95 197 675 777 1.63e-25 103
Msa0568830 MtrunA17_Chr7g0223001 52.586 116 46 5 1 110 10 122 2.38e-25 96.3
Msa0568830 MtrunA17_Chr6g0453561 48.980 98 44 2 102 194 27 123 1.23e-23 92.8
Msa0568830 MtrunA17_Chr4g0048631 46.296 108 48 2 95 197 689 791 1.67e-23 97.4
Msa0568830 MtrunA17_Chr8g0357691 49.550 111 40 5 95 197 635 737 5.91e-23 95.9
Msa0568830 MtrunA17_Chr2g0280751 52.174 92 38 2 111 197 694 784 1.38e-22 94.7
Msa0568830 MtrunA17_Chr4g0048581 50.000 94 37 3 111 197 699 789 6.04e-22 92.8
Msa0568830 MtrunA17_Chr3g0081071 46.739 92 44 1 111 197 97 188 5.66e-21 87.0
Msa0568830 MtrunA17_Chr3g0078541 46.067 89 43 1 111 194 698 786 6.84e-21 89.7
Msa0568830 MtrunA17_Chr8g0357831 45.370 108 49 2 95 197 349 451 6.96e-21 89.7
Msa0568830 MtrunA17_Chr3g0078531 46.067 89 43 1 111 194 695 783 1.08e-20 89.4
Msa0568830 MtrunA17_Chr8g0357631 50.526 95 36 4 111 197 636 727 1.10e-20 89.4
Msa0568830 MtrunA17_Chr8g0357661 44.144 111 46 5 95 197 20 122 2.35e-20 84.0
Msa0568830 MtrunA17_Chr8g0357761 46.364 110 45 4 95 197 637 739 2.59e-20 88.2
Msa0568830 MtrunA17_Chr8g0357651 46.296 108 48 2 95 197 627 729 2.69e-20 88.2
Msa0568830 MtrunA17_Chr4g0023111 42.453 106 51 2 95 195 871 971 2.86e-20 88.2
Msa0568830 MtrunA17_Chr2g0280711 44.444 108 50 2 95 197 687 789 5.92e-20 87.0
Msa0568830 MtrunA17_Chr4g0042351 47.191 89 42 1 111 194 621 709 8.86e-20 86.7
Msa0568830 MtrunA17_Chr2g0280691 47.778 90 41 2 111 195 694 782 1.39e-19 85.9
Msa0568830 MtrunA17_Chr8g0357711 45.946 111 44 5 95 197 634 736 1.46e-19 85.9
Msa0568830 MtrunA17_Chr3g0078521 44.944 89 44 1 111 194 687 775 1.49e-19 85.9
Msa0568830 MtrunA17_Chr1g0206361 45.556 90 44 1 111 195 511 600 1.61e-19 85.9
Msa0568830 MtrunA17_Chr2g0280761 45.556 90 44 1 113 197 1 90 2.52e-19 80.5
Msa0568830 MtrunA17_Chr2g0280731 44.444 108 49 3 95 197 707 808 2.57e-19 85.1
Msa0568830 MtrunA17_Chr8g0358101 46.739 92 44 1 111 197 632 723 2.68e-19 85.1
Msa0568830 MtrunA17_Chr8g0340051 42.056 107 52 2 95 196 186 287 3.39e-19 84.0
Msa0568830 MtrunA17_Chr3g0119041 45.556 90 44 1 111 195 508 597 3.49e-19 84.7
Msa0568830 MtrunA17_Chr2g0323231 44.086 93 47 1 111 198 346 438 4.25e-19 84.3
Msa0568830 MtrunA17_Chr1g0206331 44.444 90 45 1 111 195 503 592 4.48e-19 84.3
Msa0568830 MtrunA17_Chr2g0280701 46.667 90 43 1 110 194 667 756 4.48e-19 84.7
Msa0568830 MtrunA17_Chr3g0092301 48.315 89 41 1 111 194 98 186 7.29e-19 81.6
Msa0568830 MtrunA17_Chr4g0042441 44.944 89 44 1 111 194 668 756 1.32e-18 83.2
Msa0568830 MtrunA17_Chr7g0236531 42.391 92 48 1 111 197 206 297 1.86e-18 82.0
Msa0568830 MtrunA17_Chr8g0357961 46.237 93 45 1 111 198 652 744 1.88e-18 82.8
Msa0568830 MtrunA17_Chr7g0236691 45.652 92 45 1 111 197 668 759 1.88e-18 82.8
Msa0568830 MtrunA17_Chr3g0078551 42.697 89 46 1 111 194 692 780 2.01e-18 82.8
Msa0568830 MtrunA17_Chr2g0280831 44.565 92 45 2 111 197 263 353 2.16e-18 82.0
Msa0568830 MtrunA17_Chr8g0358081 45.652 92 45 1 111 197 629 720 2.33e-18 82.4
Msa0568830 MtrunA17_Chr8g0357781 45.055 91 45 1 113 198 1 91 3.18e-18 77.8
Msa0568830 MtrunA17_Chr1g0206351 46.154 91 42 3 111 195 521 610 3.22e-18 82.0
Msa0568830 MtrunA17_Chr8g0357881 46.739 92 44 1 111 197 644 735 3.59e-18 82.0
Msa0568830 MtrunA17_Chr8g0340111 43.956 91 46 1 111 196 673 763 3.65e-18 82.0
Msa0568830 MtrunA17_Chr8g0361441 43.820 89 45 1 111 194 674 762 3.98e-18 82.0
Msa0568830 MtrunA17_Chr8g0357981 45.652 92 45 1 111 197 473 564 4.08e-18 81.6
Msa0568830 MtrunA17_Chr8g0340091 34.286 140 77 3 72 196 651 790 4.41e-18 81.6
Msa0568830 MtrunA17_Chr3g0082941 42.391 92 48 1 111 197 341 432 4.43e-18 81.6
Msa0568830 MtrunA17_Chr8g0358141 44.086 93 47 1 111 198 246 338 4.79e-18 81.3
Msa0568830 MtrunA17_Chr8g0358071 45.652 92 45 1 111 197 644 735 4.93e-18 81.6
Msa0568830 MtrunA17_Chr8g0361281 48.387 93 42 2 111 197 681 773 5.15e-18 81.6
Msa0568830 MtrunA17_Chr3g0093161 46.739 92 44 1 111 197 665 756 5.55e-18 81.3
Msa0568830 MtrunA17_Chr2g0280801 44.565 92 45 2 111 197 695 785 6.89e-18 81.3
Msa0568830 MtrunA17_Chr8g0358061 44.086 93 47 1 111 198 224 316 7.25e-18 80.5
Msa0568830 MtrunA17_Chr8g0340081 40.187 107 54 2 95 196 664 765 7.41e-18 80.9
Msa0568830 MtrunA17_Chr4g0055011 44.565 92 46 1 111 197 239 330 8.15e-18 80.5
Msa0568830 MtrunA17_Chr5g0393981 46.067 89 43 1 111 194 564 652 8.82e-18 80.9
Msa0568830 MtrunA17_Chr8g0357991 45.652 92 45 1 111 197 653 744 8.86e-18 80.9
Msa0568830 MtrunA17_Chr8g0358121 46.512 86 41 1 111 191 630 715 8.89e-18 80.9
Msa0568830 MtrunA17_Chr3g0081001 43.478 92 47 1 111 197 511 602 9.88e-18 80.5
Msa0568830 MtrunA17_Chr4g0042391 44.944 89 44 1 111 194 621 709 1.21e-17 80.5
Msa0568830 MtrunA17_Chr4g0042401 44.944 89 44 1 111 194 671 759 1.47e-17 80.1
Msa0568830 MtrunA17_Chr4g0020081 46.237 93 43 3 111 197 679 770 1.55e-17 80.1
Msa0568830 MtrunA17_Chr2g0280791 44.565 92 45 2 111 197 689 779 1.92e-17 79.7
Msa0568830 MtrunA17_Chr7g0236471 37.963 108 57 2 95 197 497 599 1.93e-17 79.7
Msa0568830 MtrunA17_Chr4g0042381 43.820 89 45 1 111 194 621 709 1.98e-17 79.7
Msa0568830 MtrunA17_Chr8g0357921 42.857 91 47 1 113 198 1 91 2.38e-17 75.1
Msa0568830 MtrunA17_Chr8g0358031 45.652 92 45 1 111 197 647 738 2.44e-17 79.7
Msa0568830 MtrunA17_Chr3g0081101 42.529 87 45 1 117 198 12 98 2.61e-17 75.5
Msa0568830 MtrunA17_Chr4g0042361 41.573 89 47 1 111 194 707 795 3.04e-17 79.3
Msa0568830 MtrunA17_Chr5g0428581 44.444 90 44 2 111 195 212 300 3.50e-17 78.6
Msa0568830 MtrunA17_Chr6g0474901 34.058 138 76 4 72 194 686 823 4.01e-17 79.0
Msa0568830 MtrunA17_Chr7g0236551 42.391 92 48 1 111 197 656 747 4.63e-17 78.6
Msa0568830 MtrunA17_Chr8g0361141 47.191 89 41 2 111 194 684 771 4.79e-17 78.6
Msa0568830 MtrunA17_Chr8g0340071 39.252 107 55 2 95 196 660 761 5.01e-17 78.6
Msa0568830 MtrunA17_Chr2g0280781 44.565 92 46 1 111 197 678 769 5.11e-17 78.6
Msa0568830 MtrunA17_Chr2g0280681 44.444 90 44 2 111 194 669 758 5.66e-17 78.6
Msa0568830 MtrunA17_Chr8g0361301 42.202 109 53 2 95 198 663 766 6.00e-17 78.6
Msa0568830 MtrunA17_Chr8g0361261 42.202 109 53 2 95 198 694 797 6.40e-17 78.2
Msa0568830 MtrunA17_Chr1g0206321 41.573 89 46 2 113 195 1 89 6.67e-17 74.3
Msa0568830 MtrunA17_Chr1g0206391 41.489 94 49 2 110 197 207 300 7.29e-17 77.4
Msa0568830 MtrunA17_Chr8g0361341 42.697 89 46 1 111 194 6 94 9.30e-17 73.6
Msa0568830 MtrunA17_Chr7g0236561 42.391 92 48 1 111 197 673 764 1.14e-16 77.8
Msa0568830 MtrunA17_Chr5g0394011 45.652 92 43 2 111 195 519 610 1.14e-16 77.4
Msa0568830 MtrunA17_Chr8g0354281 43.011 93 47 2 111 197 503 595 1.19e-16 77.4
Msa0568830 MtrunA17_Chr6g0475111 35.766 137 74 4 72 194 707 843 1.39e-16 77.4
Msa0568830 MtrunA17_Chr8g0360201 47.191 89 41 2 111 194 574 661 1.40e-16 77.4
Msa0568830 MtrunA17_Chr8g0361161 44.944 89 43 2 111 194 212 299 1.48e-16 76.6
Msa0568830 MtrunA17_Chr8g0347571 34.307 137 76 4 72 194 690 826 1.56e-16 77.4
Msa0568830 MtrunA17_Chr1g0206551 46.154 91 42 3 111 195 203 292 1.71e-16 76.6
Msa0568830 MtrunA17_Chr4g0023221 43.956 91 43 3 111 195 898 986 1.81e-16 77.0
Msa0568830 MtrunA17_Chr8g0354391 39.785 93 51 1 111 198 102 194 1.86e-16 75.1
Msa0568830 MtrunA17_Chr4g0042431 40.230 87 47 1 113 194 1 87 2.25e-16 72.8
Msa0568830 MtrunA17_Chr5g0426941 40.323 124 58 5 78 195 483 596 2.67e-16 76.6
Msa0568830 MtrunA17_Chr5g0428111 42.056 107 52 2 93 194 658 759 2.80e-16 76.6
Msa0568830 MtrunA17_Chr1g0154331 41.748 103 48 4 106 197 197 298 2.92e-16 75.9
Msa0568830 MtrunA17_Chr5g0394001 35.714 112 62 2 89 195 481 587 3.42e-16 76.3
Msa0568830 MtrunA17_Chr6g0474871 42.391 92 47 2 110 195 732 823 4.67e-16 75.9
Msa0568830 MtrunA17_Chr6g0474811 43.956 91 45 2 111 195 741 831 4.67e-16 75.9
Msa0568830 MtrunA17_Chr7g0236651 39.450 109 56 2 94 197 641 744 5.48e-16 75.5
Msa0568830 MtrunA17_Chr1g0206561 45.055 91 43 3 111 195 497 586 5.66e-16 75.5
Msa0568830 MtrunA17_Chr6g0475091 40.566 106 52 3 95 194 738 838 6.17e-16 75.5
Msa0568830 MtrunA17_Chr8g0354271 44.681 94 46 2 111 198 503 596 6.29e-16 75.5
Msa0568830 MtrunA17_Chr8g0347231 52.000 75 35 1 37 110 28 102 6.73e-16 70.9
Msa0568830 MtrunA17_Chr6g0474991 40.187 107 53 3 95 195 20 121 7.13e-16 72.4
Msa0568830 MtrunA17_Chr4g0042341 39.326 89 49 1 111 194 691 779 7.87e-16 75.1
Msa0568830 MtrunA17_Chr8g0354421 43.011 93 47 2 111 197 531 623 9.57e-16 74.7
Msa0568830 MtrunA17_Chr8g0354441 41.935 93 48 2 111 197 518 610 9.81e-16 74.7
Msa0568830 MtrunA17_Chr8g0354431 43.011 93 47 2 111 197 510 602 1.07e-15 74.7
Msa0568830 MtrunA17_Chr6g0474861 42.391 92 47 2 110 195 453 544 1.08e-15 74.7
Msa0568830 MtrunA17_Chr1g0154351 41.748 103 48 4 106 197 516 617 1.12e-15 74.7
Msa0568830 MtrunA17_Chr1g0205771 41.758 91 48 1 110 195 510 600 1.18e-15 74.7
Msa0568830 MtrunA17_Chr1g0154321 42.000 100 47 3 106 195 526 624 1.25e-15 74.7
Msa0568830 MtrunA17_Chr2g0318811 43.158 95 44 4 111 197 668 760 1.32e-15 74.7
Msa0568830 MtrunA17_Chr3g0084691 41.304 92 48 2 111 196 690 781 1.46e-15 74.3
Msa0568830 MtrunA17_Chr8g0354351 37.302 126 64 4 78 197 477 593 1.59e-15 74.3
Msa0568830 MtrunA17_Chr2g0318841 45.745 94 39 5 111 195 669 759 2.05e-15 73.9
Msa0568830 MtrunA17_Chr7g0236641 42.391 92 48 1 111 197 693 784 2.36e-15 73.9
Msa0568830 MtrunA17_Chr6g0475131 41.758 91 47 2 111 195 177 267 2.56e-15 72.8
Msa0568830 MtrunA17_Chr3g0081011 41.304 92 49 1 111 197 507 598 2.74e-15 73.6
Msa0568830 MtrunA17_Chr8g0357871 42.222 90 44 2 113 197 1 87 2.98e-15 68.9
Msa0568830 MtrunA17_Chr5g0422921 39.252 107 55 2 95 196 655 756 3.54e-15 73.2
Msa0568830 MtrunA17_Chr5g0428101 42.857 91 47 1 111 196 669 759 3.67e-15 73.2
Msa0568830 MtrunA17_Chr8g0354331 40.860 93 49 2 111 197 268 360 5.02e-15 72.4
Msa0568830 MtrunA17_Chr1g0206401 40.217 92 49 2 111 196 518 609 5.53e-15 72.8
Msa0568830 MtrunA17_Chr1g0154371 40.777 103 50 3 106 198 514 615 6.20e-15 72.4
Msa0568830 MtrunA17_Chr3g0084661 42.391 92 42 3 111 194 201 289 6.21e-15 72.0
Msa0568830 MtrunA17_Chr6g0475201 37.037 108 57 3 94 195 730 832 1.06e-14 72.0
Msa0568830 MtrunA17_Chr3g0084631 38.202 89 50 1 111 194 31 119 1.11e-14 68.9
Msa0568830 MtrunA17_Chr8g0361251 39.048 105 54 2 95 194 663 762 1.34e-14 71.6
Msa0568830 MtrunA17_Chr7g0236341 42.391 92 47 2 111 197 686 776 2.03e-14 71.2
Msa0568830 MtrunA17_Chr6g0474851 42.222 90 46 2 112 195 97 186 2.44e-14 69.3
Msa0568830 MtrunA17_Chr7g0236231 41.489 94 48 3 111 198 686 778 2.63e-14 70.9
Msa0568830 MtrunA17_Chr2g0318831 42.391 92 45 3 111 195 670 760 3.05e-14 70.5
Msa0568830 MtrunA17_Chr1g0154311 41.935 93 47 3 111 197 519 610 4.15e-14 70.1
Msa0568830 MtrunA17_Chr3g0084431 39.326 89 49 1 111 194 662 750 4.62e-14 70.1
Msa0568830 MtrunA17_Chr3g0081031 35.780 109 60 2 95 198 509 612 4.66e-14 70.1
Msa0568830 MtrunA17_Chr5g0394021 39.815 108 53 3 95 197 478 578 6.73e-14 69.3
Msa0568830 MtrunA17_Chr4g0065561 34.906 106 59 2 95 195 603 703 7.02e-14 69.3
Msa0568830 MtrunA17_Chr3g0084441 31.818 154 85 5 49 196 626 765 7.53e-14 69.3
Msa0568830 MtrunA17_Chr7g0236201 43.158 95 42 3 111 197 638 728 7.55e-14 69.3
Msa0568830 MtrunA17_Chr7g0236121 43.158 95 42 3 111 197 672 762 7.58e-14 69.3
Msa0568830 MtrunA17_Chr8g0361431 40.659 91 49 1 111 196 652 742 1.21e-13 68.9
Msa0568830 MtrunA17_Chr3g0098781 41.304 92 43 3 111 194 79 167 1.33e-13 67.0
Msa0568830 MtrunA17_Chr3g0084451 32.895 152 82 5 49 194 626 763 1.43e-13 68.6
Msa0568830 MtrunA17_Chr3g0084491 32.903 155 81 6 55 196 621 765 1.58e-13 68.6
Msa0568830 MtrunA17_Chr4g0065521 34.906 106 59 2 95 195 194 294 2.77e-13 67.4
Msa0568830 MtrunA17_Chr3g0084681 38.947 95 42 3 111 194 632 721 4.94e-13 67.0
Msa0568830 MtrunA17_Chr1g0206231 35.849 106 58 2 95 195 503 603 1.14e-12 65.9
Msa0568830 MtrunA17_Chr8g0376131 39.326 89 49 1 111 194 219 307 1.67e-12 65.1
Msa0568830 MtrunA17_Chr1g0206451 41.111 90 47 2 111 195 540 628 1.70e-12 65.5
Msa0568830 MtrunA17_Chr3g0084411 37.363 91 52 1 111 196 667 757 2.35e-12 65.1
Msa0568830 MtrunA17_Chr2g0281241 39.583 96 41 3 106 196 217 300 5.21e-12 63.5
Msa0568830 MtrunA17_Chr8g0358161 54.237 59 22 1 111 164 214 272 7.45e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568830 AT1G09200.1 99.091 110 1 0 1 110 1 110 1.41e-73 218
Msa0568830 AT5G65360.1 99.091 110 1 0 1 110 1 110 1.41e-73 218
Msa0568830 AT5G10390.1 99.091 110 1 0 1 110 1 110 1.41e-73 218
Msa0568830 AT5G10400.1 99.091 110 1 0 1 110 1 110 1.41e-73 218
Msa0568830 AT3G27360.1 99.091 110 1 0 1 110 1 110 1.41e-73 218
Msa0568830 AT4G40030.3 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40030.1 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40030.4 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT5G10980.1 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40040.2 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40040.3 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40040.1 96.364 110 4 0 1 110 1 110 6.50e-71 212
Msa0568830 AT4G40030.2 96.364 110 4 0 1 110 29 138 9.24e-71 212
Msa0568830 AT5G65350.1 77.698 139 22 1 1 139 1 130 5.08e-70 209
Msa0568830 AT1G13370.1 93.636 110 7 0 1 110 1 110 7.07e-68 204
Msa0568830 AT1G75600.1 92.727 110 8 0 1 110 1 110 2.18e-67 203
Msa0568830 AT1G19890.1 88.288 111 12 1 1 110 1 111 4.73e-63 192
Msa0568830 AT5G12910.1 58.993 139 43 3 1 139 1 125 7.03e-49 155
Msa0568830 AT1G11340.1 44.037 109 48 4 95 197 671 772 1.27e-20 89.4
Msa0568830 AT1G65800.1 47.321 112 45 3 95 197 679 785 2.35e-20 88.6
Msa0568830 AT1G65790.1 46.429 112 46 3 95 197 675 781 9.98e-20 87.0
Msa0568830 AT4G23140.1 44.444 90 45 1 111 195 518 607 3.31e-19 85.5
Msa0568830 AT4G23140.2 44.444 90 45 1 111 195 524 613 3.41e-19 85.1
Msa0568830 AT4G03230.3 44.444 90 45 1 111 195 692 781 3.97e-19 85.1
Msa0568830 AT4G03230.8 44.444 90 45 1 111 195 699 788 3.97e-19 85.1
Msa0568830 AT4G03230.7 44.444 90 45 1 111 195 700 789 3.97e-19 85.1
Msa0568830 AT4G03230.2 44.444 90 45 1 111 195 757 846 4.02e-19 85.1
Msa0568830 AT4G03230.6 44.444 90 45 1 111 195 757 846 4.02e-19 85.1
Msa0568830 AT4G03230.5 44.444 90 45 1 111 195 785 874 4.04e-19 85.1
Msa0568830 AT4G03230.4 44.444 90 45 1 111 195 857 946 4.09e-19 85.1
Msa0568830 AT4G03230.1 44.444 90 45 1 111 195 857 946 4.09e-19 85.1
Msa0568830 AT1G61440.2 47.778 90 42 1 110 194 674 763 4.64e-19 85.1
Msa0568830 AT1G61440.1 47.778 90 42 1 110 194 644 733 5.37e-19 84.7
Msa0568830 AT1G61440.3 47.778 90 42 1 110 194 649 738 5.38e-19 84.7
Msa0568830 AT4G23160.1 44.444 90 45 1 111 195 526 615 7.70e-19 84.3
Msa0568830 AT4G23320.3 42.991 107 50 3 95 195 360 461 2.55e-18 82.8
Msa0568830 AT4G23320.2 42.991 107 50 3 95 195 339 440 2.59e-18 82.4
Msa0568830 AT4G23320.1 42.991 107 50 3 95 195 339 440 2.59e-18 82.4
Msa0568830 AT4G11470.1 44.565 92 45 2 110 195 505 596 3.47e-18 82.4
Msa0568830 AT4G11470.2 44.565 92 45 2 110 195 510 601 3.48e-18 82.4
Msa0568830 AT4G05200.1 43.333 90 46 1 111 195 514 603 5.26e-18 82.0
Msa0568830 AT4G05200.2 43.333 90 46 1 111 195 532 621 5.40e-18 81.6
Msa0568830 AT4G23180.1 44.444 90 45 1 111 195 515 604 6.36e-18 81.6
Msa0568830 AT4G23150.1 45.556 90 44 1 111 195 503 592 7.82e-18 81.3
Msa0568830 AT1G61430.9 46.667 90 43 1 110 194 655 744 8.17e-18 81.3
Msa0568830 AT1G61430.1 46.667 90 43 1 110 194 658 747 8.17e-18 81.3
Msa0568830 AT1G61500.1 47.778 90 42 1 110 194 657 746 8.25e-18 81.3
Msa0568830 AT1G61500.3 47.778 90 42 1 110 194 662 751 8.50e-18 81.3
Msa0568830 AT1G61430.11 46.667 90 43 1 110 194 632 721 9.02e-18 81.3
Msa0568830 AT1G61430.12 46.667 90 43 1 110 194 632 721 9.02e-18 81.3
Msa0568830 AT1G61430.13 46.667 90 43 1 110 194 632 721 9.02e-18 81.3
Msa0568830 AT1G61500.2 47.778 90 42 1 110 194 639 728 9.75e-18 81.3
Msa0568830 AT1G11280.4 46.739 92 42 2 110 194 669 760 1.09e-17 80.9
Msa0568830 AT1G11280.1 46.739 92 42 2 110 194 681 772 1.15e-17 80.9
Msa0568830 AT1G11280.2 46.739 92 42 2 110 194 671 762 1.16e-17 80.9
Msa0568830 AT1G11280.3 46.739 92 42 2 110 194 659 750 1.19e-17 80.9
Msa0568830 AT4G11530.1 45.652 92 44 2 110 195 518 609 1.31e-17 80.9
Msa0568830 AT4G11480.3 44.565 92 45 2 110 195 490 581 3.12e-17 79.7
Msa0568830 AT4G11480.4 44.565 92 45 2 110 195 487 578 3.15e-17 79.7
Msa0568830 AT4G11480.1 44.565 92 45 2 110 195 495 586 3.16e-17 79.7
Msa0568830 AT4G23130.2 42.857 91 46 2 111 195 511 601 4.91e-17 79.0
Msa0568830 AT4G23130.1 42.857 91 46 2 111 195 507 597 4.95e-17 79.0
Msa0568830 AT1G11410.4 34.641 153 78 7 49 195 649 785 5.28e-17 79.0
Msa0568830 AT1G11410.3 34.641 153 78 7 49 195 618 754 5.29e-17 79.0
Msa0568830 AT1G11410.2 43.956 91 43 3 111 195 575 663 5.37e-17 79.0
Msa0568830 AT1G11410.1 34.641 153 78 7 49 195 642 778 5.58e-17 79.0
Msa0568830 AT4G27290.2 44.444 108 48 4 95 195 667 769 7.00e-17 78.6
Msa0568830 AT4G27290.1 44.444 108 48 4 95 195 621 723 8.30e-17 78.6
Msa0568830 AT4G21380.1 44.144 111 49 3 95 197 682 787 8.67e-17 78.6
Msa0568830 AT1G61400.1 44.444 90 45 1 110 194 666 755 9.29e-17 78.2
Msa0568830 AT1G61400.2 44.444 90 45 1 110 194 674 763 9.30e-17 78.2
Msa0568830 AT1G01370.2 50.562 89 41 2 24 110 63 150 1.19e-16 74.7
Msa0568830 AT1G01370.1 50.562 89 41 2 24 110 63 150 1.19e-16 74.7
Msa0568830 AT1G01370.4 50.562 89 41 2 24 110 63 150 1.19e-16 74.7
Msa0568830 AT1G01370.3 50.562 89 41 2 24 110 63 150 1.19e-16 74.7
Msa0568830 AT4G11460.2 40.187 107 53 3 95 195 427 528 1.26e-16 77.8
Msa0568830 AT4G11460.3 40.187 107 53 3 95 195 502 603 1.38e-16 77.8
Msa0568830 AT4G11460.1 40.187 107 53 3 95 195 505 606 1.40e-16 77.8
Msa0568830 AT4G23240.2 41.121 107 52 3 95 195 184 285 1.45e-16 77.0
Msa0568830 AT4G23230.1 41.000 100 49 2 101 195 499 593 1.48e-16 77.8
Msa0568830 AT4G11490.1 45.055 91 44 2 111 195 488 578 1.85e-16 77.4
Msa0568830 AT4G38830.1 42.157 102 47 3 101 195 507 603 1.89e-16 77.4
Msa0568830 AT3G45860.1 43.617 94 46 2 111 197 518 611 2.11e-16 77.0
Msa0568830 AT4G21366.1 47.917 96 39 2 113 197 1 96 3.01e-16 71.6
Msa0568830 AT4G21390.1 41.284 109 53 3 94 197 684 786 3.06e-16 76.6
Msa0568830 AT4G23290.1 43.519 108 48 4 95 195 476 577 3.33e-16 76.6
Msa0568830 AT4G23240.1 41.121 107 52 3 95 195 491 592 3.58e-16 76.6
Msa0568830 AT4G23310.2 41.935 93 47 3 111 196 635 727 4.30e-16 76.3
Msa0568830 AT4G23310.1 41.935 93 47 3 111 196 675 767 4.34e-16 76.3
Msa0568830 AT4G23290.2 43.519 108 48 4 95 195 519 620 4.38e-16 76.3
Msa0568830 AT1G61610.1 40.000 90 48 2 111 195 692 780 4.61e-16 76.3
Msa0568830 AT1G11330.1 40.217 92 50 1 111 197 689 780 5.02e-16 76.3
Msa0568830 AT1G11330.2 40.217 92 50 1 111 197 691 782 5.02e-16 76.3
Msa0568830 AT1G61370.2 43.617 94 48 1 110 198 516 609 9.40e-16 75.5
Msa0568830 AT1G61370.1 43.617 94 48 1 110 198 667 760 1.00e-15 75.1
Msa0568830 AT1G61490.3 43.333 90 46 1 110 194 506 595 1.06e-15 75.1
Msa0568830 AT1G61490.4 43.333 90 46 1 110 194 656 745 1.19e-15 75.1
Msa0568830 AT1G61490.1 43.333 90 46 1 110 194 656 745 1.19e-15 75.1
Msa0568830 AT1G61490.2 43.333 90 46 1 110 194 656 745 1.19e-15 75.1
Msa0568830 AT1G61490.5 43.333 90 46 1 110 194 656 745 1.19e-15 75.1
Msa0568830 AT1G61490.6 43.333 90 46 1 110 194 630 719 1.32e-15 75.1
Msa0568830 AT1G61490.7 43.333 90 46 1 110 194 630 719 1.32e-15 75.1
Msa0568830 AT1G61420.5 42.222 90 47 1 110 194 512 601 1.66e-15 74.7
Msa0568830 AT1G61420.2 42.222 90 47 1 110 194 662 751 1.72e-15 74.7
Msa0568830 AT1G61420.4 42.222 90 47 1 110 194 662 751 1.72e-15 74.7
Msa0568830 AT1G61420.3 42.222 90 47 1 110 194 510 599 1.76e-15 74.3
Msa0568830 AT1G61420.1 42.222 90 47 1 110 194 660 749 1.86e-15 74.3
Msa0568830 AT1G61480.1 41.111 90 48 1 110 194 662 751 2.48e-15 74.3
Msa0568830 AT4G21410.1 42.553 94 46 3 111 197 401 493 4.24e-15 73.2
Msa0568830 AT4G21410.3 42.553 94 46 3 111 197 526 618 4.69e-15 73.2
Msa0568830 AT4G11900.9 43.000 100 47 2 101 195 630 724 5.12e-15 73.2
Msa0568830 AT4G11900.1 43.000 100 47 2 101 195 699 793 5.95e-15 73.2
Msa0568830 AT4G00960.2 42.553 94 48 2 111 198 131 224 7.40e-15 71.6
Msa0568830 AT4G00960.3 42.553 94 48 2 111 198 138 231 8.91e-15 71.6
Msa0568830 AT4G23270.3 40.860 93 49 2 111 197 493 585 9.40e-15 72.4
Msa0568830 AT4G23270.2 40.860 93 49 2 111 197 493 585 9.57e-15 72.4
Msa0568830 AT4G23270.1 40.860 93 49 2 111 197 493 585 9.57e-15 72.4
Msa0568830 AT1G61380.2 44.444 90 45 1 110 194 507 596 9.62e-15 72.4
Msa0568830 AT1G61390.2 45.055 91 41 3 110 194 518 605 9.82e-15 72.4
Msa0568830 AT1G61380.1 44.444 90 45 1 110 194 654 743 1.07e-14 72.4
Msa0568830 AT1G61390.1 45.055 91 41 3 110 194 686 773 1.09e-14 72.4
Msa0568830 AT4G00960.1 42.553 94 48 2 111 198 225 318 1.12e-14 71.6
Msa0568830 AT4G23280.3 38.298 94 52 2 111 198 461 554 1.38e-14 72.0
Msa0568830 AT4G23280.1 38.298 94 52 2 111 198 511 604 1.44e-14 72.0
Msa0568830 AT4G23280.2 38.298 94 52 2 111 198 509 602 1.45e-14 72.0
Msa0568830 AT4G23200.1 39.130 92 50 2 110 195 502 593 1.80e-14 71.6
Msa0568830 AT3G16030.2 43.158 95 47 3 110 197 570 664 1.85e-14 71.6
Msa0568830 AT3G16030.1 43.158 95 47 3 110 197 693 787 1.90e-14 71.6
Msa0568830 AT3G16030.6 43.158 95 47 3 110 197 714 808 1.91e-14 71.6
Msa0568830 AT1G61550.1 41.111 90 48 1 110 194 655 744 2.11e-14 71.2
Msa0568830 AT4G00970.1 41.935 93 48 2 111 197 513 605 2.60e-14 71.2
Msa0568830 AT1G11350.1 35.185 108 60 2 95 197 668 770 4.02e-14 70.5
Msa0568830 AT4G23210.3 42.391 92 42 3 111 195 525 612 4.70e-14 70.5
Msa0568830 AT4G21400.2 41.304 92 46 3 111 195 518 608 9.15e-14 69.7
Msa0568830 AT4G21400.1 41.304 92 46 3 111 195 530 620 9.82e-14 69.3
Msa0568830 AT4G23300.1 39.130 92 48 2 112 195 521 612 1.07e-13 69.3
Msa0568830 AT4G21400.8 41.304 92 46 3 111 195 419 509 1.16e-13 69.3
Msa0568830 AT4G21400.7 41.304 92 46 3 111 195 520 610 1.17e-13 69.3
Msa0568830 AT4G23190.1 41.304 92 46 2 112 195 518 609 1.59e-13 68.9
Msa0568830 AT4G23190.3 41.304 92 46 2 112 195 440 531 1.81e-13 68.6
Msa0568830 AT4G23190.4 41.304 92 46 2 112 195 440 531 1.81e-13 68.6
Msa0568830 AT4G27300.1 43.956 91 43 3 111 194 667 756 3.93e-13 67.8
Msa0568830 AT4G23250.3 36.792 106 56 3 96 195 511 611 3.61e-12 65.1
Msa0568830 AT4G23250.1 36.792 106 56 3 96 195 516 616 4.08e-12 64.7
Msa0568830 AT4G23250.2 36.792 106 56 3 96 195 511 611 5.59e-12 64.3
Msa0568830 AT1G61360.2 42.105 95 48 2 110 197 583 677 5.20e-11 61.6
Msa0568830 AT1G61360.3 42.105 95 48 2 110 197 583 677 5.20e-11 61.6
Msa0568830 AT1G61360.4 42.105 95 48 2 110 197 583 677 5.20e-11 61.6
Msa0568830 AT1G61360.1 42.105 95 48 2 110 197 664 758 5.21e-11 61.6

Find 57 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACATGTCCAATTAAATT+TGG 0.110039 4_1:-70468347 None:intergenic
CTTTGGTTGCCAGCTGCTTC+CGG 0.174491 4_1:-70466437 None:intergenic
TTACCACTGGAGATTATTTC+TGG 0.186636 4_1:+70468287 Msa0568830:CDS
AGAGACTCCCCAAATTTAAT+TGG 0.241778 4_1:+70468338 Msa0568830:CDS
CGGTCGCCGGAGCTGATTTC+CGG 0.242180 4_1:-70466464 None:intergenic
CGTCCTTCCATTGCATATTC+TGG 0.245891 4_1:-70468242 None:intergenic
TTTGGTTGCCAGCTGCTTCC+GGG 0.259335 4_1:-70466436 None:intergenic
ATACATGTCCAATTAAATTT+GGG 0.289380 4_1:-70468346 None:intergenic
ACAAGACATTGCTGGCCTTT+AGG 0.291908 4_1:+70469366 Msa0568830:CDS
GTTCTGAGATGCATTCAAAT+TGG 0.299739 4_1:+70468545 Msa0568830:CDS
AGCTGATTTCCGGGCGGCTT+TGG 0.313671 4_1:-70466454 None:intergenic
TCTCTCAAAGCAACTGTTCC+AGG 0.333816 4_1:-70466516 None:intergenic
CAGTGCTGTATCTGCTCTTC+AGG 0.340320 4_1:+70466647 Msa0568830:CDS
GGTCGCCGGAGCTGATTTCC+GGG 0.345559 4_1:-70466463 None:intergenic
GGAAGCTGCTGAGGCTTACT+TGG 0.361475 4_1:+70466668 Msa0568830:CDS
ATTTATAGGTGTGGACTATA+TGG 0.371461 4_1:+70468459 Msa0568830:intron
CAAGGCTCCCCGGAAGCAGC+TGG 0.396825 4_1:+70466428 Msa0568830:CDS
TTCTTCACTCCTCCGGTCGC+CGG 0.442119 4_1:-70466477 None:intergenic
GCTGCTGAGGCTTACTTGGT+TGG 0.450601 4_1:+70466672 Msa0568830:CDS
GACGTTGGAATGGAAGTTTA+CGG 0.458530 4_1:-70466575 None:intergenic
AAAGGCCAGCAATGTCTTGT+TGG 0.463219 4_1:-70469363 None:intergenic
CGGAAATCAGCTCCGGCGAC+CGG 0.464380 4_1:+70466465 Msa0568830:CDS
CCACCGGCGGCAAGGCTCCC+CGG 0.480154 4_1:+70466418 Msa0568830:CDS
ATGGACAGAAGAAAGGGCCT+TGG 0.483933 4_1:+70468478 Msa0568830:CDS
TCGCAAGTCCACCGGCGGCA+AGG 0.488583 4_1:+70466410 Msa0568830:CDS
AGTCTCCAACAAGACATTGC+TGG 0.488925 4_1:+70469358 Msa0568830:intron
AGCTGGCAACCAAAGCCGCC+CGG 0.490048 4_1:+70466445 Msa0568830:CDS
AGAAACACACATTGTGAGAC+AGG 0.490796 4_1:+70468314 Msa0568830:CDS
GGACTATATGGACAGAAGAA+AGG 0.497215 4_1:+70468471 Msa0568830:CDS
AGCCGCCCGGAAATCAGCTC+CGG 0.497667 4_1:+70466458 Msa0568830:CDS
GACTATATGGACAGAAGAAA+GGG 0.498234 4_1:+70468472 Msa0568830:CDS
GTGTGGCTTCTTCACTCCTC+CGG 0.499925 4_1:-70466484 None:intergenic
CAGTGCTCTTCTGATACTTA+CGG 0.501233 4_1:-70466542 None:intergenic
CTTCCGGGGAGCCTTGCCGC+CGG 0.507682 4_1:-70466421 None:intergenic
TTGGTTGCCAGCTGCTTCCG+GGG 0.508384 4_1:-70466435 None:intergenic
ATGCATCTCAGAACTATAGC+AGG 0.508510 4_1:-70468536 None:intergenic
TGCTCTTCAGGAAGCTGCTG+AGG 0.517538 4_1:+70466659 Msa0568830:CDS
CCGGGGAGCCTTGCCGCCGG+TGG 0.548377 4_1:-70466418 None:intergenic
GGACTTGCGAGCAGTCTGCT+TGG 0.551577 4_1:-70466397 None:intergenic
AAAATCTGATGTCTTACCAC+TGG 0.555595 4_1:+70468274 Msa0568830:CDS
CAGACTGCTCGCAAGTCCAC+CGG 0.562052 4_1:+70466402 Msa0568830:CDS
TGCTTCATCAACTATATCCA+AGG 0.578658 4_1:-70468495 None:intergenic
TCACGAACAAGACGTTGGAA+TGG 0.591294 4_1:-70466585 None:intergenic
TACATGTCCAATTAAATTTG+GGG 0.597127 4_1:-70468345 None:intergenic
AAATCAGCTCCGGCGACCGG+AGG 0.599225 4_1:+70466468 Msa0568830:CDS
TGCATCTCAGAACTATAGCA+GGG 0.601676 4_1:-70468535 None:intergenic
CAATTTCACGAACAAGACGT+TGG 0.614742 4_1:-70466590 None:intergenic
TCACCAGAATATGCAATGGA+AGG 0.620061 4_1:+70468239 Msa0568830:CDS
AAGATTTCAAGACAGATCTG+AGG 0.632208 4_1:+70466616 Msa0568830:CDS
TATGTCACCAGAATATGCAA+TGG 0.632728 4_1:+70468235 Msa0568830:CDS
ACTGCTCGCAAGTCCACCGG+CGG 0.647164 4_1:+70466405 Msa0568830:CDS
TTGCCAGAAATAATCTCCAG+TGG 0.658611 4_1:-70468290 None:intergenic
AAGCCACACAGATTCAGACC+TGG 0.672238 4_1:+70466498 Msa0568830:CDS
GCATCTCAGAACTATAGCAG+GGG 0.679974 4_1:-70468534 None:intergenic
CATCTCAGAACTATAGCAGG+GGG 0.685391 4_1:-70468533 None:intergenic
GTTCCAGGTCTGAATCTGTG+TGG 0.688220 4_1:-70466501 None:intergenic
CGCCGGAGCTGATTTCCGGG+CGG 0.701307 4_1:-70466460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTAAGAATTGAAAT+TGG - chr4_1:70466816-70466835 None:intergenic 15.0%
!!! ATGATAATGTTACAAATATA+TGG + chr4_1:70467056-70467075 Msa0568830:intron 15.0%
!!! TATTTTAAAATATGAATACG+AGG - chr4_1:70467727-70467746 None:intergenic 15.0%
!!! TCATATTTTAAAATAAAGAC+AGG + chr4_1:70467732-70467751 Msa0568830:intron 15.0%
!!! ATTAATTGTGTTGATTTTAA+TGG + chr4_1:70468847-70468866 Msa0568830:intron 15.0%
!! AAAAATAATAAATGTTGCAT+TGG + chr4_1:70468966-70468985 Msa0568830:intron 15.0%
!!! TTTTGTTCATATTTTTACAT+TGG + chr4_1:70469071-70469090 Msa0568830:intron 15.0%
!! TCATAAGTTATTGTTCTAAT+GGG - chr4_1:70467199-70467218 None:intergenic 20.0%
!!! TTAGTTTTTACTAAATCAGT+AGG - chr4_1:70467408-70467427 None:intergenic 20.0%
!!! GCATTTTTAGCAAAAAAAAT+GGG - chr4_1:70467591-70467610 None:intergenic 20.0%
!!! TGCATTTTTAGCAAAAAAAA+TGG - chr4_1:70467592-70467611 None:intergenic 20.0%
!! ATAGGAATTTATTGAAATGT+TGG - chr4_1:70467807-70467826 None:intergenic 20.0%
!! ATACATGTCCAATTAAATTT+GGG - chr4_1:70468349-70468368 None:intergenic 20.0%
!! TGGATGAAATTCAATAAATA+AGG + chr4_1:70468930-70468949 Msa0568830:intron 20.0%
!! GGATGAAATTCAATAAATAA+GGG + chr4_1:70468931-70468950 Msa0568830:intron 20.0%
!! TAATAAGCTTATAACTGAAA+TGG - chr4_1:70469189-70469208 None:intergenic 20.0%
!! TAGAAATCTAAATACTTACT+AGG + chr4_1:70469288-70469307 Msa0568830:intron 20.0%
!! AAGCAATTATAAATTGTCAT+TGG - chr4_1:70469316-70469335 None:intergenic 20.0%
!! ATAATTGCTTCAATTTGATT+TGG + chr4_1:70469326-70469345 Msa0568830:intron 20.0%
!!! TAATTGCTTCAATTTGATTT+GGG + chr4_1:70469327-70469346 Msa0568830:intron 20.0%
!! TTATCTACTACACTTTGAAA+AGG + chr4_1:70466966-70466985 Msa0568830:intron 25.0%
!! TATCTACTACACTTTGAAAA+GGG + chr4_1:70466967-70466986 Msa0568830:intron 25.0%
!! ATTAAATTCCATCACTGATT+GGG + chr4_1:70467112-70467131 Msa0568830:intron 25.0%
! CTCATAAGTTATTGTTCTAA+TGG - chr4_1:70467200-70467219 None:intergenic 25.0%
! TCCTAGTAAGATATTATTCA+TGG + chr4_1:70467350-70467369 Msa0568830:intron 25.0%
! TCCATGAATAATATCTTACT+AGG - chr4_1:70467354-70467373 None:intergenic 25.0%
! AAAAACTAAAAACTCATCGA+AGG + chr4_1:70467419-70467438 Msa0568830:intron 25.0%
! AAAACTAAAAACTCATCGAA+GGG + chr4_1:70467420-70467439 Msa0568830:intron 25.0%
!!! TTCTCTTTAGAATGTCTATT+AGG + chr4_1:70467641-70467660 Msa0568830:intron 25.0%
!! AGAATGTCTATTAGGAATTT+TGG + chr4_1:70467649-70467668 Msa0568830:intron 25.0%
!!! AATTTTGGCCTTCAAAAATT+AGG + chr4_1:70467664-70467683 Msa0568830:intron 25.0%
! TCAACTAAGATCAAAACAAA+AGG + chr4_1:70467891-70467910 Msa0568830:intron 25.0%
! TATATCTTCATCAAGATTCA+AGG + chr4_1:70467972-70467991 Msa0568830:intron 25.0%
!!! ATTCCAAAATCTGAGATTTT+GGG - chr4_1:70468058-70468077 None:intergenic 25.0%
! TAATCACGAAATTATACAGA+TGG + chr4_1:70468162-70468181 Msa0568830:intron 25.0%
! TACATGTCCAATTAAATTTG+GGG - chr4_1:70468348-70468367 None:intergenic 25.0%
! CATACATGTCCAATTAAATT+TGG - chr4_1:70468350-70468369 None:intergenic 25.0%
! GTCATATATCATTAGATTGT+AGG - chr4_1:70468407-70468426 None:intergenic 25.0%
! AAACTCTGTTGTGAATTTAT+AGG + chr4_1:70468445-70468464 Msa0568830:intron 25.0%
!!! AATAAAAATGCTGGTTTTTG+AGG - chr4_1:70468659-70468678 None:intergenic 25.0%
! CACTTATTAATTGTAGTTAG+TGG + chr4_1:70468896-70468915 Msa0568830:intron 25.0%
!! TTAACATAGTTCTTTAGAAG+TGG + chr4_1:70469235-70469254 Msa0568830:intron 25.0%
CTACAAGCATTCTAATTCTA+GGG - chr4_1:70466850-70466869 None:intergenic 30.0%
ACTACAAGCATTCTAATTCT+AGG - chr4_1:70466851-70466870 None:intergenic 30.0%
AATCACGTCTAAAAGCTAAA+GGG - chr4_1:70467095-70467114 None:intergenic 30.0%
TAATCACGTCTAAAAGCTAA+AGG - chr4_1:70467096-70467115 None:intergenic 30.0%
GATTAAATTCCATCACTGAT+TGG + chr4_1:70467111-70467130 Msa0568830:intron 30.0%
! TTAAATTCCATCACTGATTG+GGG + chr4_1:70467113-70467132 Msa0568830:intron 30.0%
! TTAGATTACCATTTTGGATG+TGG + chr4_1:70467153-70467172 Msa0568830:intron 30.0%
TAGCAATGAAGAGTCAAATT+CGG - chr4_1:70467241-70467260 None:intergenic 30.0%
TTGGAAAAGGAAAATGTGAT+TGG - chr4_1:70467317-70467336 None:intergenic 30.0%
TAAATCAGTAGGACAAAACA+TGG - chr4_1:70467397-70467416 None:intergenic 30.0%
! TAAGAGCATATGCTAAATCT+AGG + chr4_1:70467505-70467524 Msa0568830:intron 30.0%
TTTGCTAAAAATGCAATTCG+TGG + chr4_1:70467597-70467616 Msa0568830:intron 30.0%
! ATTCTAAAGAGAACAGGATT+AGG - chr4_1:70467634-70467653 None:intergenic 30.0%
! ATAGACATTCTAAAGAGAAC+AGG - chr4_1:70467640-70467659 None:intergenic 30.0%
TCTGGATATCATCAAATTTG+AGG + chr4_1:70467690-70467709 Msa0568830:intron 30.0%
CGTATTGAGCTTAATTTCAT+AGG - chr4_1:70467825-70467844 None:intergenic 30.0%
TCAAAACAAAAGGTCATCAT+TGG + chr4_1:70467901-70467920 Msa0568830:intron 30.0%
! AATCCCAAAATCTCAGATTT+TGG + chr4_1:70468052-70468071 Msa0568830:intron 30.0%
!! CATTCCAAAATCTGAGATTT+TGG - chr4_1:70468059-70468078 None:intergenic 30.0%
!! CAAAATCTCAGATTTTGGAA+TGG + chr4_1:70468057-70468076 Msa0568830:intron 30.0%
! TTTGGAATGGCAAGAATATT+TGG + chr4_1:70468070-70468089 Msa0568830:intron 30.0%
! ACCATTTTGTATAATTGCAG+TGG + chr4_1:70468209-70468228 Msa0568830:intron 30.0%
TCCACTGCAATTATACAAAA+TGG - chr4_1:70468213-70468232 None:intergenic 30.0%
! ATAAAGAGTAGCCTTAAAAC+AGG + chr4_1:70468381-70468400 Msa0568830:intron 30.0%
! ATTTATAGGTGTGGACTATA+TGG + chr4_1:70468459-70468478 Msa0568830:intron 30.0%
AAAACCACTTCTAACATTGA+TGG - chr4_1:70468605-70468624 None:intergenic 30.0%
TTGTCGTTGAATAAAAATGC+TGG - chr4_1:70468668-70468687 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr4_1:70468798-70468817 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr4_1:70468799-70468818 Msa0568830:intron 30.0%
AAGAGACAATAATTGTGAGA+CGG + chr4_1:70469032-70469051 Msa0568830:intron 30.0%
AAGATTTCAAGACAGATCTG+AGG + chr4_1:70466616-70466635 Msa0568830:CDS 35.0%
! ACACTTTGAAAAGGGTTGTT+TGG + chr4_1:70466975-70466994 Msa0568830:intron 35.0%
! CACTTTGAAAAGGGTTGTTT+GGG + chr4_1:70466976-70466995 Msa0568830:intron 35.0%
! ACTTTGAAAAGGGTTGTTTG+GGG + chr4_1:70466977-70466996 Msa0568830:intron 35.0%
CAAATATATGGTGTAACTCC+TGG + chr4_1:70467068-70467087 Msa0568830:intron 35.0%
! GCTGTCTTAGATTACCATTT+TGG + chr4_1:70467147-70467166 Msa0568830:intron 35.0%
CTCTATAACCACATCCAAAA+TGG - chr4_1:70467164-70467183 None:intergenic 35.0%
! TATAAATCTGAGACGTCACA+TGG - chr4_1:70467272-70467291 None:intergenic 35.0%
CCTGATAAGTGAATTGGAAA+AGG - chr4_1:70467330-70467349 None:intergenic 35.0%
! CCTTTTCCAATTCACTTATC+AGG + chr4_1:70467327-70467346 Msa0568830:intron 35.0%
! CCAGATAGCCTAATTTTTGA+AGG - chr4_1:70467675-70467694 None:intergenic 35.0%
CCTTCAAAAATTAGGCTATC+TGG + chr4_1:70467672-70467691 Msa0568830:intron 35.0%
AATTATCTTTGTGCCTGACA+AGG - chr4_1:70467781-70467800 None:intergenic 35.0%
ACAAAAGGTCATCATTGGAT+TGG + chr4_1:70467906-70467925 Msa0568830:intron 35.0%
CAAAAGGTCATCATTGGATT+GGG + chr4_1:70467907-70467926 Msa0568830:intron 35.0%
!!! AAGCGTTTTGAAATCCTTTG+TGG + chr4_1:70467932-70467951 Msa0568830:intron 35.0%
!!! AGCGTTTTGAAATCCTTTGT+GGG + chr4_1:70467933-70467952 Msa0568830:intron 35.0%
TCAAGCAAGAACAAAAAGAG+TGG + chr4_1:70468105-70468124 Msa0568830:intron 35.0%
TATGTCACCAGAATATGCAA+TGG + chr4_1:70468235-70468254 Msa0568830:CDS 35.0%
AAAATCTGATGTCTTACCAC+TGG + chr4_1:70468274-70468293 Msa0568830:CDS 35.0%
TTACCACTGGAGATTATTTC+TGG + chr4_1:70468287-70468306 Msa0568830:CDS 35.0%
AGAGACTCCCCAAATTTAAT+TGG + chr4_1:70468338-70468357 Msa0568830:CDS 35.0%
! TAGATTGTAGGCCTGTTTTA+AGG - chr4_1:70468395-70468414 None:intergenic 35.0%
CTGTTGTGAATTTATAGGTG+TGG + chr4_1:70468450-70468469 Msa0568830:intron 35.0%
GACTATATGGACAGAAGAAA+GGG + chr4_1:70468472-70468491 Msa0568830:CDS 35.0%
TGCTTCATCAACTATATCCA+AGG - chr4_1:70468498-70468517 None:intergenic 35.0%
!! GTTCTGAGATGCATTCAAAT+TGG + chr4_1:70468545-70468564 Msa0568830:CDS 35.0%
TAGACCATCAATGTTAGAAG+TGG + chr4_1:70468598-70468617 Msa0568830:intron 35.0%
!!! AAAATGCTGGTTTTTGAGGT+GGG - chr4_1:70468655-70468674 None:intergenic 35.0%
!!! AAAAATGCTGGTTTTTGAGG+TGG - chr4_1:70468656-70468675 None:intergenic 35.0%
! ACGGATGGAGTATTTGATTA+CGG - chr4_1:70468779-70468798 None:intergenic 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr4_1:70468910-70468929 Msa0568830:intron 35.0%
ACAATACAACAGAGTGACAA+CGG - chr4_1:70469142-70469161 None:intergenic 35.0%
CAGTGCTCTTCTGATACTTA+CGG - chr4_1:70466545-70466564 None:intergenic 40.0%
GACGTTGGAATGGAAGTTTA+CGG - chr4_1:70466578-70466597 None:intergenic 40.0%
CAATTTCACGAACAAGACGT+TGG - chr4_1:70466593-70466612 None:intergenic 40.0%
GAGAGTTACAATCATGCCTA+AGG + chr4_1:70466734-70466753 Msa0568830:intron 40.0%
AAGAAGAATCAGAGGAGAGA+GGG + chr4_1:70466770-70466789 Msa0568830:intron 40.0%
! CTTTGAAAAGGGTTGTTTGG+GGG + chr4_1:70466978-70466997 Msa0568830:intron 40.0%
CTAGGACCTGATAAGTGAAT+TGG - chr4_1:70467336-70467355 None:intergenic 40.0%
TTGTTCCTATACTCCTTGTC+AGG + chr4_1:70467765-70467784 Msa0568830:intron 40.0%
TGGGATTCATTTCAGCATCA+AGG - chr4_1:70468039-70468058 None:intergenic 40.0%
GCAAGAACAAAAAGAGTGGT+CGG + chr4_1:70468109-70468128 Msa0568830:intron 40.0%
TCACCAGAATATGCAATGGA+AGG + chr4_1:70468239-70468258 Msa0568830:CDS 40.0%
TTGCCAGAAATAATCTCCAG+TGG - chr4_1:70468293-70468312 None:intergenic 40.0%
AGAAACACACATTGTGAGAC+AGG + chr4_1:70468314-70468333 Msa0568830:CDS 40.0%
GGACTATATGGACAGAAGAA+AGG + chr4_1:70468471-70468490 Msa0568830:CDS 40.0%
TGCATCTCAGAACTATAGCA+GGG - chr4_1:70468538-70468557 None:intergenic 40.0%
ATGCATCTCAGAACTATAGC+AGG - chr4_1:70468539-70468558 None:intergenic 40.0%
GACTAATATTGTGAGACGGA+TGG - chr4_1:70468794-70468813 None:intergenic 40.0%
AGGTTTGTGCACGATTGTTA+AGG + chr4_1:70468819-70468838 Msa0568830:intron 40.0%
AGACAATAATTGTGAGACGG+AGG + chr4_1:70469035-70469054 Msa0568830:intron 40.0%
GACAATAATTGTGAGACGGA+GGG + chr4_1:70469036-70469055 Msa0568830:intron 40.0%
ACAATAATTGTGAGACGGAG+GGG + chr4_1:70469037-70469056 Msa0568830:intron 40.0%
GAGTTTGTAGACATTCCTAG+AGG + chr4_1:70469098-70469117 Msa0568830:intron 40.0%
! CTTGTTTCTCAAGAACCTCT+AGG - chr4_1:70469116-70469135 None:intergenic 40.0%
TCTCTCAAAGCAACTGTTCC+AGG - chr4_1:70466519-70466538 None:intergenic 45.0%
TCACGAACAAGACGTTGGAA+TGG - chr4_1:70466588-70466607 None:intergenic 45.0%
CTTGCAAGCTGAATGTCCTT+AGG - chr4_1:70466753-70466772 None:intergenic 45.0%
CAGCTTGCAAGAAGAATCAG+AGG + chr4_1:70466762-70466781 Msa0568830:intron 45.0%
CAAGAAGAATCAGAGGAGAG+AGG + chr4_1:70466769-70466788 Msa0568830:intron 45.0%
GTCTAAAAGCTAAAGGGACC+AGG - chr4_1:70467089-70467108 None:intergenic 45.0%
GTAAGTTCCCCAATCAGTGA+TGG - chr4_1:70467123-70467142 None:intergenic 45.0%
! TTGTGCCTGACAAGGAGTAT+AGG - chr4_1:70467773-70467792 None:intergenic 45.0%
ATCCTTTGTGGGATTGATCG+AGG + chr4_1:70467944-70467963 Msa0568830:intron 45.0%
AGCATCAAGGAGAACATTGC+TGG - chr4_1:70468026-70468045 None:intergenic 45.0%
CGTCCTTCCATTGCATATTC+TGG - chr4_1:70468245-70468264 None:intergenic 45.0%
CATCTCAGAACTATAGCAGG+GGG - chr4_1:70468536-70468555 None:intergenic 45.0%
GCATCTCAGAACTATAGCAG+GGG - chr4_1:70468537-70468556 None:intergenic 45.0%
TTGCAAGAGTCATCAACGTC+AGG + chr4_1:70468695-70468714 Msa0568830:intron 45.0%
!!! TAGCTTTTAGCGAGCACTGA+TGG - chr4_1:70468756-70468775 None:intergenic 45.0%
CAATAATTGTGAGACGGAGG+GGG + chr4_1:70469038-70469057 Msa0568830:intron 45.0%
AGTCTCCAACAAGACATTGC+TGG + chr4_1:70469358-70469377 Msa0568830:intron 45.0%
AAAGGCCAGCAATGTCTTGT+TGG - chr4_1:70469366-70469385 None:intergenic 45.0%
!!! ATTAAATATATAGTTTTATA+TGG + chr4_1:70467020-70467039 Msa0568830:intron 5.0%
!!! TTAAATATATAGTTTTATAT+GGG + chr4_1:70467021-70467040 Msa0568830:intron 5.0%
AAGCCACACAGATTCAGACC+TGG + chr4_1:70466498-70466517 Msa0568830:CDS 50.0%
GTTCCAGGTCTGAATCTGTG+TGG - chr4_1:70466504-70466523 None:intergenic 50.0%
CAGTGCTGTATCTGCTCTTC+AGG + chr4_1:70466647-70466666 Msa0568830:CDS 50.0%
CACCTCGATCAATCCCACAA+AGG - chr4_1:70467949-70467968 None:intergenic 50.0%
ATGGACAGAAGAAAGGGCCT+TGG + chr4_1:70468478-70468497 Msa0568830:CDS 50.0%
CTATAGCAGGGGGATAAGAC+TGG - chr4_1:70468526-70468545 None:intergenic 50.0%
!!! GGTTTTTGAGGTGGGCAAAG+AGG - chr4_1:70468647-70468666 None:intergenic 50.0%
CAAGAGTCATCAACGTCAGG+AGG + chr4_1:70468698-70468717 Msa0568830:intron 50.0%
TTTGGTTGCCAGCTGCTTCC+GGG - chr4_1:70466439-70466458 None:intergenic 55.0%
CTTTGGTTGCCAGCTGCTTC+CGG - chr4_1:70466440-70466459 None:intergenic 55.0%
GTGTGGCTTCTTCACTCCTC+CGG - chr4_1:70466487-70466506 None:intergenic 55.0%
TGCTCTTCAGGAAGCTGCTG+AGG + chr4_1:70466659-70466678 Msa0568830:CDS 55.0%
GGAAGCTGCTGAGGCTTACT+TGG + chr4_1:70466668-70466687 Msa0568830:CDS 55.0%
GCTGCTGAGGCTTACTTGGT+TGG + chr4_1:70466672-70466691 Msa0568830:CDS 55.0%
!! TGGGGGTGTTGTTGTGAGAG+AGG + chr4_1:70466995-70467014 Msa0568830:intron 55.0%
! TGGGCAAAGAGGCGTGTCAT+TGG - chr4_1:70468636-70468655 None:intergenic 55.0%
GAGTCATCAACGTCAGGAGG+AGG + chr4_1:70468701-70468720 Msa0568830:intron 55.0%
GGACTTGCGAGCAGTCTGCT+TGG - chr4_1:70466400-70466419 None:intergenic 60.0%
CAGACTGCTCGCAAGTCCAC+CGG + chr4_1:70466402-70466421 Msa0568830:CDS 60.0%
TTGGTTGCCAGCTGCTTCCG+GGG - chr4_1:70466438-70466457 None:intergenic 60.0%
! AGCTGATTTCCGGGCGGCTT+TGG - chr4_1:70466457-70466476 None:intergenic 60.0%
TTCTTCACTCCTCCGGTCGC+CGG - chr4_1:70466480-70466499 None:intergenic 60.0%
ACTGCTCGCAAGTCCACCGG+CGG + chr4_1:70466405-70466424 Msa0568830:CDS 65.0%
AGCTGGCAACCAAAGCCGCC+CGG + chr4_1:70466445-70466464 Msa0568830:CDS 65.0%
AGCCGCCCGGAAATCAGCTC+CGG + chr4_1:70466458-70466477 Msa0568830:CDS 65.0%
! GGTCGCCGGAGCTGATTTCC+GGG - chr4_1:70466466-70466485 None:intergenic 65.0%
! CGGTCGCCGGAGCTGATTTC+CGG - chr4_1:70466467-70466486 None:intergenic 65.0%
CGGAAATCAGCTCCGGCGAC+CGG + chr4_1:70466465-70466484 Msa0568830:CDS 65.0%
AAATCAGCTCCGGCGACCGG+AGG + chr4_1:70466468-70466487 Msa0568830:CDS 65.0%
TCGCAAGTCCACCGGCGGCA+AGG + chr4_1:70466410-70466429 Msa0568830:CDS 70.0%
CAAGGCTCCCCGGAAGCAGC+TGG + chr4_1:70466428-70466447 Msa0568830:CDS 70.0%
! CGCCGGAGCTGATTTCCGGG+CGG - chr4_1:70466463-70466482 None:intergenic 70.0%
CTTCCGGGGAGCCTTGCCGC+CGG - chr4_1:70466424-70466443 None:intergenic 75.0%
! CCACCGGCGGCAAGGCTCCC+CGG + chr4_1:70466418-70466437 Msa0568830:CDS 80.0%
! CCGGGGAGCCTTGCCGCCGG+TGG - chr4_1:70466421-70466440 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70466387 70469387 70466387 ID=Msa0568830;Name=Msa0568830
chr4_1 mRNA 70466387 70469387 70466387 ID=Msa0568830-mRNA-1;Parent=Msa0568830;Name=Msa0568830-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.33|0|0.75|1|1|4|0|199
chr4_1 exon 70466387 70466715 70466387 ID=Msa0568830-mRNA-1:exon:23763;Parent=Msa0568830-mRNA-1
chr4_1 exon 70468229 70468364 70468229 ID=Msa0568830-mRNA-1:exon:23764;Parent=Msa0568830-mRNA-1
chr4_1 exon 70468467 70468573 70468467 ID=Msa0568830-mRNA-1:exon:23765;Parent=Msa0568830-mRNA-1
chr4_1 exon 70469360 70469387 70469360 ID=Msa0568830-mRNA-1:exon:23766;Parent=Msa0568830-mRNA-1
chr4_1 CDS 70466387 70466715 70466387 ID=Msa0568830-mRNA-1:cds;Parent=Msa0568830-mRNA-1
chr4_1 CDS 70468229 70468364 70468229 ID=Msa0568830-mRNA-1:cds;Parent=Msa0568830-mRNA-1
chr4_1 CDS 70468467 70468573 70468467 ID=Msa0568830-mRNA-1:cds;Parent=Msa0568830-mRNA-1
chr4_1 CDS 70469360 70469387 70469360 ID=Msa0568830-mRNA-1:cds;Parent=Msa0568830-mRNA-1
Gene Sequence

>Msa0568830

ATGGCACGTACCAAGCAGACTGCTCGCAAGTCCACCGGCGGCAAGGCTCCCCGGAAGCAGCTGGCAACCAAAGCCGCCCGGAAATCAGCTCCGGCGACCGGAGGAGTGAAGAAGCCACACAGATTCAGACCTGGAACAGTTGCTTTGAGAGAGATCCGTAAGTATCAGAAGAGCACTGAGCTTCTCATCCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATTGCTCAAGATTTCAAGACAGATCTGAGGTTTCAGAGCAGTGCTGTATCTGCTCTTCAGGAAGCTGCTGAGGCTTACTTGGTTGGTCTCTTTGAAGACACAAATCTTGGATATATGTCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTACCACTGGAGATTATTTCTGGCAAGAGAAACACACATTGTGAGACAGGAAGAGACTCCCCAAATTTAATTGGACATGTGTGGACTATATGGACAGAAGAAAGGGCCTTGGATATAGTTGATGAAGCACTAAACCAGTCTTATCCCCCTGCTATAGTTCTGAGATGCATTCAAATTGGACTCTTTCTCCAACAAGACATTGCTGGCCTTTAG
Protein sequence

>Msa0568830

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLGYMSPEYAMEGRYSTKSDVLPLEIISGKRNTHCETGRDSPNLIGHVWTIWTEERALDIVDEALNQSYPPAIVLRCIQIGLFLQQDIAGL*