Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0569600 | KEH36274.1 | 86.275 | 51 | 7 | 0 | 7 | 57 | 32 | 82 | 1.02e-22 | 92.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0569600 | A0A072V2L7 | 86.275 | 51 | 7 | 0 | 7 | 57 | 32 | 82 | 4.88e-23 | 92.0 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0309020 | Msa0569600 | 0.810046 | 1.400609e-50 | -8.615850e-47 |
Msa0568310 | Msa0569600 | 0.811487 | 6.830581e-51 | -8.615850e-47 |
Msa0569600 | Msa0570820 | 0.800963 | 1.126263e-48 | -8.615850e-47 |
Msa0569600 | Msa1136090 | 0.808094 | 3.666155e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0569600 | MtrunA17_Chr3g0143601 | 86.275 | 51 | 7 | 0 | 7 | 57 | 32 | 82 | 9.40e-27 | 92.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 17 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTTAGGGTGATATGATTT+TGG | 0.179424 | 4_1:+71523040 | Msa0569600:intron |
TTGATCTTTCCCTTCCATTC+AGG | 0.208013 | 4_1:-71523086 | None:intergenic |
ATAATTACCACACCTATCAT+TGG | 0.386552 | 4_1:-71521970 | None:intergenic |
TTAGTAGTTGGAAGATGTCT+TGG | 0.451398 | 4_1:+71521913 | None:intergenic |
GGGCAATGAGCATCTTGAAA+TGG | 0.468221 | 4_1:+71522919 | Msa0569600:CDS |
GCATCTTGAAATGGTTATGA+TGG | 0.484463 | 4_1:+71522928 | Msa0569600:CDS |
TTGGTCTAAAACATAGAAAG+AGG | 0.534252 | 4_1:+71521932 | Msa0569600:five_prime_UTR |
AATGGTTATGATGGATTCGA+AGG | 0.551631 | 4_1:+71522937 | Msa0569600:CDS |
GTGGTGATCACACACCTGAA+TGG | 0.559813 | 4_1:+71523072 | Msa0569600:CDS |
TGATCACACACCTGAATGGA+AGG | 0.561482 | 4_1:+71523076 | Msa0569600:CDS |
GACTTGAAGTATCCAATGAT+AGG | 0.570031 | 4_1:+71521958 | Msa0569600:exon |
GAATGGAAGGGAAAGATCAA+AGG | 0.591870 | 4_1:+71523089 | Msa0569600:CDS |
GTATTCTTGATATAGTGTTG+GGG | 0.619055 | 4_1:+71522899 | Msa0569600:intron |
ATGACGTGTATCATCAACAA+TGG | 0.659985 | 4_1:+71523116 | Msa0569600:CDS |
GAAGTATCCAATGATAGGTG+TGG | 0.661110 | 4_1:+71521963 | Msa0569600:exon |
GATCACACACCTGAATGGAA+GGG | 0.672624 | 4_1:+71523077 | Msa0569600:CDS |
ATTCAGGTGTGTGATCACCA+CGG | 0.733008 | 4_1:-71523070 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTACTTTTGAATTAAAAT+AGG | + | chr4_1:71522381-71522400 | Msa0569600:intron | 10.0% |
!!! | TTTTACTTTTGAATTAAAAT+AGG | + | chr4_1:71522381-71522400 | Msa0569600:intron | 10.0% |
!! | TTTCAAAGATTGAAAAAATA+TGG | - | chr4_1:71522025-71522044 | None:intergenic | 15.0% |
!!! | TATTTTTTCAATCTTTGAAA+TGG | + | chr4_1:71522025-71522044 | Msa0569600:intron | 15.0% |
!! | TTTCAAAGATTGAAAAAATA+TGG | - | chr4_1:71522025-71522044 | None:intergenic | 15.0% |
!!! | TATTTTTTCAATCTTTGAAA+TGG | + | chr4_1:71522025-71522044 | Msa0569600:intron | 15.0% |
!! | GTGTGGTAATTATAAAATTA+TGG | + | chr4_1:71521980-71521999 | Msa0569600:intron | 20.0% |
!! | TAATTATAAAATTATGGACC+AGG | + | chr4_1:71521986-71522005 | Msa0569600:intron | 20.0% |
!! | AAGAAGATTTAACATTCTTA+TGG | + | chr4_1:71522597-71522616 | Msa0569600:intron | 20.0% |
!! | ACAGATTCTAACTAAAAAAA+TGG | - | chr4_1:71522690-71522709 | None:intergenic | 20.0% |
!!! | TCAACTCTTTTTTTCAATTT+AGG | + | chr4_1:71523025-71523044 | Msa0569600:intron | 20.0% |
!!! | CAACTCTTTTTTTCAATTTA+GGG | + | chr4_1:71523026-71523045 | Msa0569600:intron | 20.0% |
!! | GTGTGGTAATTATAAAATTA+TGG | + | chr4_1:71521980-71521999 | Msa0569600:intron | 20.0% |
!! | TAATTATAAAATTATGGACC+AGG | + | chr4_1:71521986-71522005 | Msa0569600:intron | 20.0% |
!! | AAGAAGATTTAACATTCTTA+TGG | + | chr4_1:71522597-71522616 | Msa0569600:intron | 20.0% |
!! | ACAGATTCTAACTAAAAAAA+TGG | - | chr4_1:71522690-71522709 | None:intergenic | 20.0% |
!!! | TCAACTCTTTTTTTCAATTT+AGG | + | chr4_1:71523025-71523044 | Msa0569600:intron | 20.0% |
!!! | CAACTCTTTTTTTCAATTTA+GGG | + | chr4_1:71523026-71523045 | Msa0569600:intron | 20.0% |
! | ACTATCCTGTTAGTAAAAAT+TGG | + | chr4_1:71522066-71522085 | Msa0569600:intron | 25.0% |
!!! | AACTTTAAAACATCTACCAT+AGG | + | chr4_1:71522252-71522271 | Msa0569600:intron | 25.0% |
! | ATATGTAAGGATATGATTCA+TGG | + | chr4_1:71522438-71522457 | Msa0569600:intron | 25.0% |
! | ACATATTCAAACTGGAAAAA+TGG | - | chr4_1:71522567-71522586 | None:intergenic | 25.0% |
! | AAAAATGTCAATGACTCTTA+AGG | + | chr4_1:71522855-71522874 | Msa0569600:intron | 25.0% |
!!! | AATTTAGGGTGATATGATTT+TGG | + | chr4_1:71523040-71523059 | Msa0569600:intron | 25.0% |
! | ACTATCCTGTTAGTAAAAAT+TGG | + | chr4_1:71522066-71522085 | Msa0569600:intron | 25.0% |
!!! | AACTTTAAAACATCTACCAT+AGG | + | chr4_1:71522252-71522271 | Msa0569600:intron | 25.0% |
! | ATATGTAAGGATATGATTCA+TGG | + | chr4_1:71522438-71522457 | Msa0569600:intron | 25.0% |
! | ACATATTCAAACTGGAAAAA+TGG | - | chr4_1:71522567-71522586 | None:intergenic | 25.0% |
! | AAAAATGTCAATGACTCTTA+AGG | + | chr4_1:71522855-71522874 | Msa0569600:intron | 25.0% |
!!! | AATTTAGGGTGATATGATTT+TGG | + | chr4_1:71523040-71523059 | Msa0569600:intron | 25.0% |
! | TTGGTCTAAAACATAGAAAG+AGG | + | chr4_1:71521932-71521951 | Msa0569600:five_prime_UTR | 30.0% |
ATAATTACCACACCTATCAT+TGG | - | chr4_1:71521973-71521992 | None:intergenic | 30.0% | |
TATGGAAGATAAAAGTTACC+TGG | - | chr4_1:71522007-71522026 | None:intergenic | 30.0% | |
ATATCTCTTGACTCTTAGAT+AGG | + | chr4_1:71522127-71522146 | Msa0569600:intron | 30.0% | |
AATCATATCCTTACATATGC+CGG | - | chr4_1:71522436-71522455 | None:intergenic | 30.0% | |
! | ATTTCAAAGAATACGCCTTT+TGG | - | chr4_1:71522521-71522540 | None:intergenic | 30.0% |
ATGCATGTACATATTCAAAC+TGG | - | chr4_1:71522575-71522594 | None:intergenic | 30.0% | |
TTGTGCAGCAAACTTATTTA+TGG | + | chr4_1:71522755-71522774 | Msa0569600:intron | 30.0% | |
!!! | ACATTTTTTGAACTCTGACT+TGG | + | chr4_1:71522782-71522801 | Msa0569600:intron | 30.0% |
TCGTATTCTTGATATAGTGT+TGG | + | chr4_1:71522897-71522916 | Msa0569600:intron | 30.0% | |
CGTATTCTTGATATAGTGTT+GGG | + | chr4_1:71522898-71522917 | Msa0569600:intron | 30.0% | |
GTATTCTTGATATAGTGTTG+GGG | + | chr4_1:71522899-71522918 | Msa0569600:intron | 30.0% | |
! | TTGGTCTAAAACATAGAAAG+AGG | + | chr4_1:71521932-71521951 | Msa0569600:five_prime_UTR | 30.0% |
ATAATTACCACACCTATCAT+TGG | - | chr4_1:71521973-71521992 | None:intergenic | 30.0% | |
TATGGAAGATAAAAGTTACC+TGG | - | chr4_1:71522007-71522026 | None:intergenic | 30.0% | |
ATATCTCTTGACTCTTAGAT+AGG | + | chr4_1:71522127-71522146 | Msa0569600:intron | 30.0% | |
AATCATATCCTTACATATGC+CGG | - | chr4_1:71522436-71522455 | None:intergenic | 30.0% | |
! | ATTTCAAAGAATACGCCTTT+TGG | - | chr4_1:71522521-71522540 | None:intergenic | 30.0% |
ATGCATGTACATATTCAAAC+TGG | - | chr4_1:71522575-71522594 | None:intergenic | 30.0% | |
TTGTGCAGCAAACTTATTTA+TGG | + | chr4_1:71522755-71522774 | Msa0569600:intron | 30.0% | |
!!! | ACATTTTTTGAACTCTGACT+TGG | + | chr4_1:71522782-71522801 | Msa0569600:intron | 30.0% |
TCGTATTCTTGATATAGTGT+TGG | + | chr4_1:71522897-71522916 | Msa0569600:intron | 30.0% | |
CGTATTCTTGATATAGTGTT+GGG | + | chr4_1:71522898-71522917 | Msa0569600:intron | 30.0% | |
GTATTCTTGATATAGTGTTG+GGG | + | chr4_1:71522899-71522918 | Msa0569600:intron | 30.0% | |
! | GACTTGAAGTATCCAATGAT+AGG | + | chr4_1:71521958-71521977 | Msa0569600:exon | 35.0% |
! | AGGGACCAATTTTTACTAAC+AGG | - | chr4_1:71522074-71522093 | None:intergenic | 35.0% |
TCAAATACTTGCAAGCTTGA+GGG | - | chr4_1:71522093-71522112 | None:intergenic | 35.0% | |
TTCAAATACTTGCAAGCTTG+AGG | - | chr4_1:71522094-71522113 | None:intergenic | 35.0% | |
AATGTAGCTTCTTCAACACT+TGG | - | chr4_1:71522180-71522199 | None:intergenic | 35.0% | |
AAAACTCATGCTTCATCCTA+TGG | - | chr4_1:71522271-71522290 | None:intergenic | 35.0% | |
! | TGAAATCCAACGTTTTCTTG+CGG | + | chr4_1:71522535-71522554 | Msa0569600:intron | 35.0% |
AATCTGTACATGTGTGAACA+AGG | + | chr4_1:71522703-71522722 | Msa0569600:intron | 35.0% | |
TATCACACAGAAAGATGTCA+CGG | + | chr4_1:71522817-71522836 | Msa0569600:intron | 35.0% | |
CAATGACTCTTAAGGAAACA+TGG | + | chr4_1:71522863-71522882 | Msa0569600:intron | 35.0% | |
GCATCTTGAAATGGTTATGA+TGG | + | chr4_1:71522928-71522947 | Msa0569600:CDS | 35.0% | |
!! | AATGGTTATGATGGATTCGA+AGG | + | chr4_1:71522937-71522956 | Msa0569600:CDS | 35.0% |
ATGACGTGTATCATCAACAA+TGG | + | chr4_1:71523116-71523135 | Msa0569600:CDS | 35.0% | |
! | GACTTGAAGTATCCAATGAT+AGG | + | chr4_1:71521958-71521977 | Msa0569600:exon | 35.0% |
! | AGGGACCAATTTTTACTAAC+AGG | - | chr4_1:71522074-71522093 | None:intergenic | 35.0% |
TCAAATACTTGCAAGCTTGA+GGG | - | chr4_1:71522093-71522112 | None:intergenic | 35.0% | |
TTCAAATACTTGCAAGCTTG+AGG | - | chr4_1:71522094-71522113 | None:intergenic | 35.0% | |
AATGTAGCTTCTTCAACACT+TGG | - | chr4_1:71522180-71522199 | None:intergenic | 35.0% | |
AAAACTCATGCTTCATCCTA+TGG | - | chr4_1:71522271-71522290 | None:intergenic | 35.0% | |
! | TGAAATCCAACGTTTTCTTG+CGG | + | chr4_1:71522535-71522554 | Msa0569600:intron | 35.0% |
AATCTGTACATGTGTGAACA+AGG | + | chr4_1:71522703-71522722 | Msa0569600:intron | 35.0% | |
TATCACACAGAAAGATGTCA+CGG | + | chr4_1:71522817-71522836 | Msa0569600:intron | 35.0% | |
CAATGACTCTTAAGGAAACA+TGG | + | chr4_1:71522863-71522882 | Msa0569600:intron | 35.0% | |
GCATCTTGAAATGGTTATGA+TGG | + | chr4_1:71522928-71522947 | Msa0569600:CDS | 35.0% | |
!! | AATGGTTATGATGGATTCGA+AGG | + | chr4_1:71522937-71522956 | Msa0569600:CDS | 35.0% |
ATGACGTGTATCATCAACAA+TGG | + | chr4_1:71523116-71523135 | Msa0569600:CDS | 35.0% | |
! | GAAGTATCCAATGATAGGTG+TGG | + | chr4_1:71521963-71521982 | Msa0569600:exon | 40.0% |
CGGAGCATACTTATACATCT+GGG | - | chr4_1:71522416-71522435 | None:intergenic | 40.0% | |
CCAGATGTATAAGTATGCTC+CGG | + | chr4_1:71522414-71522433 | Msa0569600:intron | 40.0% | |
ATGATTCATGGATGTTCCGA+TGG | + | chr4_1:71522450-71522469 | Msa0569600:intron | 40.0% | |
! | GAAATCCAACGTTTTCTTGC+GGG | + | chr4_1:71522536-71522555 | Msa0569600:intron | 40.0% |
!!! | ATGATTTTGGCTTTGATCCG+TGG | + | chr4_1:71523053-71523072 | Msa0569600:CDS | 40.0% |
TTGATCTTTCCCTTCCATTC+AGG | - | chr4_1:71523089-71523108 | None:intergenic | 40.0% | |
GAATGGAAGGGAAAGATCAA+AGG | + | chr4_1:71523089-71523108 | Msa0569600:CDS | 40.0% | |
! | GAAGTATCCAATGATAGGTG+TGG | + | chr4_1:71521963-71521982 | Msa0569600:exon | 40.0% |
CGGAGCATACTTATACATCT+GGG | - | chr4_1:71522416-71522435 | None:intergenic | 40.0% | |
CCAGATGTATAAGTATGCTC+CGG | + | chr4_1:71522414-71522433 | Msa0569600:intron | 40.0% | |
ATGATTCATGGATGTTCCGA+TGG | + | chr4_1:71522450-71522469 | Msa0569600:intron | 40.0% | |
! | GAAATCCAACGTTTTCTTGC+GGG | + | chr4_1:71522536-71522555 | Msa0569600:intron | 40.0% |
!!! | ATGATTTTGGCTTTGATCCG+TGG | + | chr4_1:71523053-71523072 | Msa0569600:CDS | 40.0% |
TTGATCTTTCCCTTCCATTC+AGG | - | chr4_1:71523089-71523108 | None:intergenic | 40.0% | |
GAATGGAAGGGAAAGATCAA+AGG | + | chr4_1:71523089-71523108 | Msa0569600:CDS | 40.0% | |
CCGGAGCATACTTATACATC+TGG | - | chr4_1:71522417-71522436 | None:intergenic | 45.0% | |
AGTATGCTCCGGCATATGTA+AGG | + | chr4_1:71522425-71522444 | Msa0569600:intron | 45.0% | |
! | ATTATGTCTGGGATCAGTCC+CGG | - | chr4_1:71522484-71522503 | None:intergenic | 45.0% |
GGACTGATCCCAGACATAAT+GGG | + | chr4_1:71522484-71522503 | Msa0569600:intron | 45.0% | |
GGGCAATGAGCATCTTGAAA+TGG | + | chr4_1:71522919-71522938 | Msa0569600:CDS | 45.0% | |
ATTCAGGTGTGTGATCACCA+CGG | - | chr4_1:71523073-71523092 | None:intergenic | 45.0% | |
TGATCACACACCTGAATGGA+AGG | + | chr4_1:71523076-71523095 | Msa0569600:CDS | 45.0% | |
GATCACACACCTGAATGGAA+GGG | + | chr4_1:71523077-71523096 | Msa0569600:CDS | 45.0% | |
CCGGAGCATACTTATACATC+TGG | - | chr4_1:71522417-71522436 | None:intergenic | 45.0% | |
AGTATGCTCCGGCATATGTA+AGG | + | chr4_1:71522425-71522444 | Msa0569600:intron | 45.0% | |
! | ATTATGTCTGGGATCAGTCC+CGG | - | chr4_1:71522484-71522503 | None:intergenic | 45.0% |
GGACTGATCCCAGACATAAT+GGG | + | chr4_1:71522484-71522503 | Msa0569600:intron | 45.0% | |
GGGCAATGAGCATCTTGAAA+TGG | + | chr4_1:71522919-71522938 | Msa0569600:CDS | 45.0% | |
ATTCAGGTGTGTGATCACCA+CGG | - | chr4_1:71523073-71523092 | None:intergenic | 45.0% | |
TGATCACACACCTGAATGGA+AGG | + | chr4_1:71523076-71523095 | Msa0569600:CDS | 45.0% | |
GATCACACACCTGAATGGAA+GGG | + | chr4_1:71523077-71523096 | Msa0569600:CDS | 45.0% | |
TGTTCCGATGGTAGCAGAAC+CGG | + | chr4_1:71522462-71522481 | Msa0569600:intron | 50.0% | |
GGGACTGATCCCAGACATAA+TGG | + | chr4_1:71522483-71522502 | Msa0569600:intron | 50.0% | |
!! | GATCCCAGACATAATGGGCT+TGG | + | chr4_1:71522489-71522508 | Msa0569600:intron | 50.0% |
CAGCCAAGCCCATTATGTCT+GGG | - | chr4_1:71522495-71522514 | None:intergenic | 50.0% | |
ACAGCCAAGCCCATTATGTC+TGG | - | chr4_1:71522496-71522515 | None:intergenic | 50.0% | |
ACAGACCCGCAAGAAAACGT+TGG | - | chr4_1:71522544-71522563 | None:intergenic | 50.0% | |
GTGGTGATCACACACCTGAA+TGG | + | chr4_1:71523072-71523091 | Msa0569600:CDS | 50.0% | |
TGTTCCGATGGTAGCAGAAC+CGG | + | chr4_1:71522462-71522481 | Msa0569600:intron | 50.0% | |
GGGACTGATCCCAGACATAA+TGG | + | chr4_1:71522483-71522502 | Msa0569600:intron | 50.0% | |
!! | GATCCCAGACATAATGGGCT+TGG | + | chr4_1:71522489-71522508 | Msa0569600:intron | 50.0% |
CAGCCAAGCCCATTATGTCT+GGG | - | chr4_1:71522495-71522514 | None:intergenic | 50.0% | |
ACAGCCAAGCCCATTATGTC+TGG | - | chr4_1:71522496-71522515 | None:intergenic | 50.0% | |
ACAGACCCGCAAGAAAACGT+TGG | - | chr4_1:71522544-71522563 | None:intergenic | 50.0% | |
GTGGTGATCACACACCTGAA+TGG | + | chr4_1:71523072-71523091 | Msa0569600:CDS | 50.0% | |
GTTCCGATGGTAGCAGAACC+GGG | + | chr4_1:71522463-71522482 | Msa0569600:intron | 55.0% | |
AGTCCCGGTTCTGCTACCAT+CGG | - | chr4_1:71522469-71522488 | None:intergenic | 55.0% | |
TGGGCTTGGCTGTAGCCAAA+AGG | + | chr4_1:71522503-71522522 | Msa0569600:intron | 55.0% | |
GTTCCGATGGTAGCAGAACC+GGG | + | chr4_1:71522463-71522482 | Msa0569600:intron | 55.0% | |
AGTCCCGGTTCTGCTACCAT+CGG | - | chr4_1:71522469-71522488 | None:intergenic | 55.0% | |
TGGGCTTGGCTGTAGCCAAA+AGG | + | chr4_1:71522503-71522522 | Msa0569600:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 71521920 | 71523160 | 71521920 | ID=Msa0569600;Name=Msa0569600 |
chr4_1 | mRNA | 71521920 | 71523160 | 71521920 | ID=Msa0569600-mRNA-1;Parent=Msa0569600;Name=Msa0569600-mRNA-1;_AED=0.39;_eAED=0.39;_QI=53|0|0|0.66|0.5|0.33|3|0|57 |
chr4_1 | exon | 71521920 | 71521984 | 71521920 | ID=Msa0569600-mRNA-1:exon:24321;Parent=Msa0569600-mRNA-1 |
chr4_1 | exon | 71522914 | 71522958 | 71522914 | ID=Msa0569600-mRNA-1:exon:24322;Parent=Msa0569600-mRNA-1 |
chr4_1 | exon | 71523047 | 71523160 | 71523047 | ID=Msa0569600-mRNA-1:exon:24323;Parent=Msa0569600-mRNA-1 |
chr4_1 | five_prime_UTR | 71521920 | 71521972 | 71521920 | ID=Msa0569600-mRNA-1:five_prime_utr;Parent=Msa0569600-mRNA-1 |
chr4_1 | CDS | 71521973 | 71521984 | 71521973 | ID=Msa0569600-mRNA-1:cds;Parent=Msa0569600-mRNA-1 |
chr4_1 | CDS | 71522914 | 71522958 | 71522914 | ID=Msa0569600-mRNA-1:cds;Parent=Msa0569600-mRNA-1 |
chr4_1 | CDS | 71523047 | 71523160 | 71523047 | ID=Msa0569600-mRNA-1:cds;Parent=Msa0569600-mRNA-1 |
Gene Sequence |
Protein sequence |