Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568310 | XP_039684838.1 | 82.996 | 247 | 5 | 1 | 1 | 210 | 1 | 247 | 7.24e-141 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568310 | sp|Q00497|SK_SOLLC | 50.244 | 205 | 65 | 1 | 43 | 210 | 58 | 262 | 8.16e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568310 | A0A396GU32 | 82.996 | 247 | 5 | 1 | 1 | 210 | 1 | 247 | 3.46e-141 | 406 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0568310 | Msa0569600 | 0.811487 | 6.830581e-51 | -8.615850e-47 |
| Msa0568310 | Msa0570820 | 0.817082 | 3.965863e-52 | -8.615850e-47 |
| Msa0568310 | Msa0571630 | 0.814787 | 1.289689e-51 | -8.615850e-47 |
| Msa0568310 | Msa0648310 | 0.801554 | 8.525660e-49 | -8.615850e-47 |
| Msa0568310 | Msa0860110 | 0.816970 | 4.202490e-52 | -8.615850e-47 |
| Msa0568310 | Msa0907260 | 0.800356 | 1.498028e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568310 | MtrunA17_Chr8g0383021 | 82.996 | 247 | 5 | 1 | 1 | 210 | 1 | 247 | 6.66e-145 | 406 |
| Msa0568310 | MtrunA17_Chr6g0462401 | 32.168 | 143 | 93 | 1 | 41 | 183 | 50 | 188 | 5.10e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568310 | AT2G21940.4 | 47.162 | 229 | 80 | 4 | 22 | 213 | 40 | 264 | 2.20e-62 | 197 |
| Msa0568310 | AT2G21940.2 | 47.162 | 229 | 79 | 4 | 22 | 213 | 40 | 263 | 1.08e-61 | 196 |
| Msa0568310 | AT2G21940.5 | 47.162 | 229 | 79 | 4 | 22 | 213 | 40 | 263 | 1.08e-61 | 196 |
| Msa0568310 | AT2G21940.1 | 47.162 | 229 | 79 | 4 | 22 | 213 | 40 | 263 | 1.08e-61 | 196 |
| Msa0568310 | AT2G21940.7 | 46.847 | 222 | 76 | 4 | 22 | 206 | 40 | 256 | 7.16e-60 | 190 |
| Msa0568310 | AT2G21940.3 | 46.847 | 222 | 76 | 4 | 22 | 206 | 40 | 256 | 7.16e-60 | 190 |
| Msa0568310 | AT2G21940.6 | 46.847 | 222 | 76 | 4 | 22 | 206 | 40 | 256 | 7.16e-60 | 190 |
| Msa0568310 | AT4G39540.2 | 50.515 | 194 | 55 | 3 | 58 | 210 | 65 | 258 | 1.59e-57 | 185 |
| Msa0568310 | AT4G39540.1 | 50.515 | 194 | 55 | 3 | 58 | 210 | 65 | 258 | 1.59e-57 | 185 |
| Msa0568310 | AT4G39540.3 | 48.020 | 202 | 56 | 4 | 58 | 210 | 65 | 266 | 4.83e-54 | 176 |
| Msa0568310 | AT3G26900.3 | 40.367 | 109 | 65 | 0 | 75 | 183 | 75 | 183 | 7.95e-18 | 80.9 |
| Msa0568310 | AT3G26900.1 | 40.367 | 109 | 65 | 0 | 75 | 183 | 75 | 183 | 7.95e-18 | 80.9 |
| Msa0568310 | AT3G26900.2 | 40.367 | 109 | 65 | 0 | 75 | 183 | 75 | 183 | 7.95e-18 | 80.9 |
Find 80 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTATCTTCTTCTATTT+TGG | 0.032803 | 4_1:-69919304 | Msa0568310:three_prime_UTR |
| CAATTTGCGGTTTGCAATTA+AGG | 0.144797 | 4_1:-69919633 | Msa0568310:three_prime_UTR |
| GGTCTCCCATGGGTCTTAAT+TGG | 0.224798 | 4_1:-69919282 | Msa0568310:three_prime_UTR |
| TAGCAACAGTTTGAATTTCT+AGG | 0.232709 | 4_1:-69919501 | Msa0568310:three_prime_UTR |
| TACAACATACAATCTCTTAC+AGG | 0.309721 | 4_1:+69919333 | None:intergenic |
| GAAATTCAAACTGTTGCTAT+TGG | 0.319091 | 4_1:+69919505 | None:intergenic |
| CTGTTGTACGGCCTATTAAT+TGG | 0.350188 | 4_1:-69920950 | Msa0568310:intron |
| GCTGATATATTCAAGCTCTA+TGG | 0.360240 | 4_1:-69922824 | Msa0568310:CDS |
| TGTTCTTATAACAATATTCC+AGG | 0.365109 | 4_1:-69924999 | Msa0568310:intron |
| GAGTGGAAGCAAAATCTAAT+TGG | 0.380675 | 4_1:+69925389 | None:intergenic |
| CACTAAGTGGGGTCGTCAAC+CGG | 0.387217 | 4_1:+69919443 | None:intergenic |
| TTGATTGAGGAAGAGGTTGA+TGG | 0.403718 | 4_1:-69922857 | Msa0568310:CDS |
| TGCAAGATAGTAGTGCGATT+TGG | 0.410666 | 4_1:-69919696 | Msa0568310:CDS |
| GTAGCTTCAACATTGGAATC+TGG | 0.413868 | 4_1:-69923937 | Msa0568310:intron |
| AAATGACAAGTTTATGCATC+AGG | 0.414811 | 4_1:+69920988 | None:intergenic |
| TTGCAGGCGCTAGAGCAAAT+TGG | 0.422109 | 4_1:-69919749 | Msa0568310:intron |
| TGTATATACTATATATATTC+CGG | 0.424719 | 4_1:-69919462 | Msa0568310:three_prime_UTR |
| CATAAACTTGTCATTTCTAC+AGG | 0.428732 | 4_1:-69920981 | Msa0568310:CDS |
| AAATTGACATGCAGGAATGA+TGG | 0.432438 | 4_1:-69923563 | Msa0568310:intron |
| GAGAATTGTGTGAGAATAAC+CGG | 0.432966 | 4_1:-69925098 | Msa0568310:CDS |
| GGTTATTCTCACACAATTCT+CGG | 0.435105 | 4_1:+69925100 | None:intergenic |
| TGATACATTGATTGAGGAAG+AGG | 0.440199 | 4_1:-69922864 | Msa0568310:CDS |
| GACCCCACTTAGTGGGATAA+AGG | 0.446925 | 4_1:-69919434 | Msa0568310:three_prime_UTR |
| TACTCTTGTAGCTTCAACAT+TGG | 0.455200 | 4_1:-69923944 | Msa0568310:intron |
| GGCTCTGGGAAGACAACTGT+GGG | 0.455572 | 4_1:-69923541 | Msa0568310:CDS |
| TTCTCGGGTCGGGTAAGAAC+CGG | 0.470591 | 4_1:+69925116 | None:intergenic |
| TGTTCAAATGTTGCATCTAC+CGG | 0.470846 | 4_1:-69925135 | Msa0568310:CDS |
| CATGCAGGAATGATGGGCTC+TGG | 0.472739 | 4_1:-69923556 | Msa0568310:intron |
| CAGATTCTGCCGTATTTAAG+TGG | 0.478853 | 4_1:-69923685 | Msa0568310:CDS |
| TCTCACACAATTCTCGGGTC+GGG | 0.489860 | 4_1:+69925106 | None:intergenic |
| GTTTCCCCTTGAGGAAGAGT+TGG | 0.510532 | 4_1:-69923905 | Msa0568310:CDS |
| AATCTAATTGGAATGGATGA+AGG | 0.514196 | 4_1:+69925401 | None:intergenic |
| TTCTAATGAGACTCTAGCAT+TGG | 0.514662 | 4_1:+69920328 | None:intergenic |
| TTATAGTGATACATTGATTG+AGG | 0.517101 | 4_1:-69922870 | Msa0568310:intron |
| TTCTCACACAATTCTCGGGT+CGG | 0.518453 | 4_1:+69925105 | None:intergenic |
| CGGTTGACGACCCCACTTAG+TGG | 0.520350 | 4_1:-69919442 | Msa0568310:three_prime_UTR |
| AATTGACATGCAGGAATGAT+GGG | 0.520917 | 4_1:-69923562 | Msa0568310:intron |
| CAGCCTTTATCCCACTAAGT+GGG | 0.530475 | 4_1:+69919431 | None:intergenic |
| GAAGCAAAATCTAATTGGAA+TGG | 0.532321 | 4_1:+69925394 | None:intergenic |
| GGTCCGACTCAAAGAACAAC+CGG | 0.536701 | 4_1:+69925079 | None:intergenic |
| CTTGTCATTTCTACAGGTGG+AGG | 0.541169 | 4_1:-69920975 | Msa0568310:CDS |
| GTTATTCTCACACAATTCTC+GGG | 0.542551 | 4_1:+69925101 | None:intergenic |
| AGAATCTTTCTTTCGCGAGA+AGG | 0.544258 | 4_1:-69922801 | Msa0568310:CDS |
| TAACCGGTTGTTCTTTGAGT+CGG | 0.545142 | 4_1:-69925082 | Msa0568310:CDS |
| TGAGGAAGAGTTGGTTCTGA+AGG | 0.546791 | 4_1:-69923896 | Msa0568310:intron |
| TGTATTGCCGCTGTATGTAA+TGG | 0.551325 | 4_1:-69925168 | Msa0568310:exon |
| GGGCGCTGTATATATGTTGT+TGG | 0.552480 | 4_1:-69923664 | Msa0568310:intron |
| TCAGCCTTTATCCCACTAAG+TGG | 0.553573 | 4_1:+69919430 | None:intergenic |
| GGTTGTTCTTTGAGTCGGAC+CGG | 0.558486 | 4_1:-69925077 | Msa0568310:CDS |
| ATTTCTCAAACAAATCTACC+AGG | 0.562522 | 4_1:-69925351 | Msa0568310:intron |
| TCGGTGCAAGAAGGTTTCTA+CGG | 0.564921 | 4_1:-69925030 | Msa0568310:CDS |
| ATCTTTCTTTCGCGAGAAGG+AGG | 0.565809 | 4_1:-69922798 | Msa0568310:intron |
| ATACAGCGCCCACTTAAATA+CGG | 0.566584 | 4_1:+69923676 | None:intergenic |
| CAGGTGGAGGTGCTGTTGTA+CGG | 0.570266 | 4_1:-69920962 | Msa0568310:CDS |
| AAACTTGTCATTTCTACAGG+TGG | 0.573379 | 4_1:-69920978 | Msa0568310:CDS |
| GGTTGACGACCCCACTTAGT+GGG | 0.576686 | 4_1:-69919441 | Msa0568310:three_prime_UTR |
| AAGGCACCAATTAAGACCCA+TGG | 0.576990 | 4_1:+69919276 | None:intergenic |
| TCAGAACCAACTCTTCCTCA+AGG | 0.583804 | 4_1:+69923899 | None:intergenic |
| CAGAACCAACTCTTCCTCAA+GGG | 0.586131 | 4_1:+69923900 | None:intergenic |
| ATGCAGGAATGATGGGCTCT+GGG | 0.586330 | 4_1:-69923555 | Msa0568310:intron |
| GTGTTAGTTAGAGTTGAACA+AGG | 0.596530 | 4_1:+69925437 | None:intergenic |
| AGATTCTGCCGTATTTAAGT+GGG | 0.599085 | 4_1:-69923684 | Msa0568310:CDS |
| CCAGGAAATATATGCACAAG+GGG | 0.600293 | 4_1:-69920825 | Msa0568310:intron |
| AATGACAAGTTTATGCATCA+GGG | 0.602843 | 4_1:+69920989 | None:intergenic |
| AGGGCATAAGTTTCCCCTTG+AGG | 0.610167 | 4_1:-69923914 | Msa0568310:CDS |
| TGAGACTCTAGCATTGGCGT+TGG | 0.610419 | 4_1:+69920334 | None:intergenic |
| GCTTCAACATTGGAATCTGG+AGG | 0.615047 | 4_1:-69923934 | Msa0568310:CDS |
| GGGCTCTGGGAAGACAACTG+TGG | 0.617107 | 4_1:-69923542 | Msa0568310:CDS |
| AGAACCAACTCTTCCTCAAG+GGG | 0.619441 | 4_1:+69923901 | None:intergenic |
| TCAGACGATTCGGTGCAAGA+AGG | 0.619552 | 4_1:-69925039 | Msa0568310:CDS |
| TGCCAGGAAATATATGCACA+AGG | 0.620476 | 4_1:-69920827 | Msa0568310:intron |
| GCCAGGAAATATATGCACAA+GGG | 0.635533 | 4_1:-69920826 | Msa0568310:intron |
| AACAACACCGCACAACAGCA+TGG | 0.638911 | 4_1:+69919610 | None:intergenic |
| AGCCTTTATCCCACTAAGTG+GGG | 0.639685 | 4_1:+69919432 | None:intergenic |
| AGGCACCAATTAAGACCCAT+GGG | 0.643574 | 4_1:+69919277 | None:intergenic |
| CTTCAACATTGGAATCTGGA+GGG | 0.659832 | 4_1:-69923933 | Msa0568310:CDS |
| TTAGCATCCATTACATACAG+CGG | 0.666263 | 4_1:+69925161 | None:intergenic |
| ATTAAGGCCATGCTGTTGTG+CGG | 0.694550 | 4_1:-69919617 | Msa0568310:three_prime_UTR |
| CAGGAAATATATGCACAAGG+GGG | 0.768658 | 4_1:-69920824 | Msa0568310:intron |
| GCTCTGGGAAGACAACTGTG+GGG | 0.798287 | 4_1:-69923540 | Msa0568310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATTTTTTGATTCA+TGG | - | chr4_1:69921783-69921802 | Msa0568310:intron | 10.0% |
| !!! | AAGAAAATATTTTGTTTATT+TGG | + | chr4_1:69922394-69922413 | None:intergenic | 10.0% |
| !!! | TTATTTTTAATCTCTATAAT+TGG | - | chr4_1:69923180-69923199 | Msa0568310:intron | 10.0% |
| !!! | TAATTTTTATACCAATTAAT+AGG | + | chr4_1:69923787-69923806 | None:intergenic | 10.0% |
| !! | ATTATGGATAATTAATATAA+GGG | + | chr4_1:69924250-69924269 | None:intergenic | 10.0% |
| !! | AATTATGGATAATTAATATA+AGG | + | chr4_1:69924251-69924270 | None:intergenic | 10.0% |
| !!! | ATATTAATTATCCATAATTT+TGG | - | chr4_1:69924252-69924271 | Msa0568310:intron | 10.0% |
| !! | AAAATTATGTATAAAAAATG+TGG | + | chr4_1:69925171-69925190 | None:intergenic | 10.0% |
| !!! | TTTTTATACATAATTTTTGT+TGG | - | chr4_1:69925174-69925193 | Msa0568310:five_prime_UTR | 10.0% |
| !!! | TTTTATACATAATTTTTGTT+GGG | - | chr4_1:69925175-69925194 | Msa0568310:five_prime_UTR | 10.0% |
| !! | TGGTATATATATACTTAAAA+GGG | + | chr4_1:69920977-69920996 | None:intergenic | 15.0% |
| !! | ATGGTATATATATACTTAAA+AGG | + | chr4_1:69920978-69920997 | None:intergenic | 15.0% |
| !!! | ATTATGTAGCATTTTTTTTT+TGG | - | chr4_1:69921459-69921478 | Msa0568310:intron | 15.0% |
| !! | TACATTTAATATTTGATATG+AGG | - | chr4_1:69921546-69921565 | Msa0568310:intron | 15.0% |
| !! | ATTCAAGTGATATTAAATTA+AGG | - | chr4_1:69921585-69921604 | Msa0568310:intron | 15.0% |
| !! | TATTATGCAATAGATAAAAA+CGG | - | chr4_1:69921620-69921639 | Msa0568310:intron | 15.0% |
| !! | CAATTATATCAAATTAATAC+CGG | + | chr4_1:69922136-69922155 | None:intergenic | 15.0% |
| !!! | AAAGGTTTTAAGAAATAATT+AGG | - | chr4_1:69922939-69922958 | Msa0568310:intron | 15.0% |
| !! | TAGTACAAAATTTATCAAAT+AGG | - | chr4_1:69923057-69923076 | Msa0568310:intron | 15.0% |
| !!! | AAGTAAGTTTTTATGAAATT+CGG | + | chr4_1:69924183-69924202 | None:intergenic | 15.0% |
| !!! | TCATAAAAACTTACTTTTAA+AGG | - | chr4_1:69924187-69924206 | Msa0568310:intron | 15.0% |
| !! | TGTATATACTATATATATTC+CGG | - | chr4_1:69925261-69925280 | Msa0568310:intron | 15.0% |
| !!! | TCGATTATTATTATTCCTTT+TGG | - | chr4_1:69919459-69919478 | Msa0568310:three_prime_UTR | 20.0% |
| !!! | ATTATTATTCCTTTTGGTTT+CGG | - | chr4_1:69919465-69919484 | Msa0568310:three_prime_UTR | 20.0% |
| !! | AAATAACATTCAACAGAATT+TGG | + | chr4_1:69919988-69920007 | None:intergenic | 20.0% |
| !! | AATATCAGAAACAAAATGTA+AGG | + | chr4_1:69920760-69920779 | None:intergenic | 20.0% |
| !! | ATTATGCAATAGATAAAAAC+GGG | - | chr4_1:69921621-69921640 | Msa0568310:intron | 20.0% |
| !! | TATATAGAAGCAGAAAATAA+GGG | + | chr4_1:69922058-69922077 | None:intergenic | 20.0% |
| !! | ATATATAGAAGCAGAAAATA+AGG | + | chr4_1:69922059-69922078 | None:intergenic | 20.0% |
| !!! | TAAATTGATTTAGTTTGTAG+AGG | - | chr4_1:69922536-69922555 | Msa0568310:intron | 20.0% |
| !! | ATTGATTGATTGTACATATA+TGG | - | chr4_1:69922593-69922612 | Msa0568310:intron | 20.0% |
| !! | TGTTTATTTCAAACAAAGTT+GGG | + | chr4_1:69922877-69922896 | None:intergenic | 20.0% |
| !! | ATGTTTATTTCAAACAAAGT+TGG | + | chr4_1:69922878-69922897 | None:intergenic | 20.0% |
| !!! | TTTTTACTAAAGTGGTTTTA+AGG | - | chr4_1:69923240-69923259 | Msa0568310:intron | 20.0% |
| !!! | TTTTAATCTCTATAATCGTT+TGG | + | chr4_1:69923358-69923377 | None:intergenic | 20.0% |
| !! | TAATAGTCAAACAGAATAAT+AGG | + | chr4_1:69923608-69923627 | None:intergenic | 20.0% |
| !! | TAAGATATTGTGAATTGTTT+CGG | - | chr4_1:69923634-69923653 | Msa0568310:intron | 20.0% |
| !! | ATCTTTACATGTATTTGTAT+GGG | - | chr4_1:69923866-69923885 | Msa0568310:intron | 20.0% |
| !! | TGACAAAGCATATTATATTA+AGG | - | chr4_1:69924066-69924085 | Msa0568310:intron | 20.0% |
| !! | GACAAAGCATATTATATTAA+GGG | - | chr4_1:69924067-69924086 | Msa0568310:intron | 20.0% |
| !!! | AATATTTTTTTACGCAAGTT+TGG | + | chr4_1:69924281-69924300 | None:intergenic | 20.0% |
| !!! | TATTTTGATTGTTATCATCT+AGG | + | chr4_1:69924720-69924739 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTCTTCAATTTG+CGG | - | chr4_1:69925077-69925096 | Msa0568310:CDS | 20.0% |
| ! | GAGAAATGAAAGAAAAAGAA+TGG | + | chr4_1:69919359-69919378 | None:intergenic | 25.0% |
| ! | TGTTCTTATAACAATATTCC+AGG | - | chr4_1:69919724-69919743 | Msa0568310:CDS | 25.0% |
| ! | CTACACTTTCAAAAACAAAA+GGG | + | chr4_1:69919837-69919856 | None:intergenic | 25.0% |
| ! | ACTACACTTTCAAAAACAAA+AGG | + | chr4_1:69919838-69919857 | None:intergenic | 25.0% |
| !!! | TTTTGTCATTATTTAAAGCG+AGG | - | chr4_1:69919859-69919878 | Msa0568310:intron | 25.0% |
| ! | TTGCATATTAATCACGTTAT+AGG | + | chr4_1:69920016-69920035 | None:intergenic | 25.0% |
| ! | ATAACGTGATTAATATGCAA+AGG | - | chr4_1:69920016-69920035 | Msa0568310:intron | 25.0% |
| ! | TAACGTGATTAATATGCAAA+GGG | - | chr4_1:69920017-69920036 | Msa0568310:intron | 25.0% |
| ! | TTAAAGAGCTTATTGGATTA+AGG | + | chr4_1:69920286-69920305 | None:intergenic | 25.0% |
| ! | AGTTATCTTAAAGAGCTTAT+TGG | + | chr4_1:69920293-69920312 | None:intergenic | 25.0% |
| !!! | AAGCTCTTTAAGATAACTTT+TGG | - | chr4_1:69920295-69920314 | Msa0568310:intron | 25.0% |
| ! | GTGATAGAAAATATATTCTC+AGG | + | chr4_1:69920527-69920546 | None:intergenic | 25.0% |
| ! | AAAATGTAAGGATCCAAAAT+GGG | + | chr4_1:69920748-69920767 | None:intergenic | 25.0% |
| !! | GTTTTGCTTAAAAAAATGGA+AGG | + | chr4_1:69920918-69920937 | None:intergenic | 25.0% |
| !!! | GATGGTTTTGCTTAAAAAAA+TGG | + | chr4_1:69920922-69920941 | None:intergenic | 25.0% |
| !!! | TATTGGTTCAAGTAAGAAAA+TGG | + | chr4_1:69920997-69921016 | None:intergenic | 25.0% |
| !! | GATCTATTCTGCAATTTTAT+TGG | + | chr4_1:69921014-69921033 | None:intergenic | 25.0% |
| ! | CAATACAAGTATGATTACTT+TGG | - | chr4_1:69921121-69921140 | Msa0568310:intron | 25.0% |
| !! | TTAGCTATTCATTTTGTGAT+TGG | - | chr4_1:69921225-69921244 | Msa0568310:intron | 25.0% |
| ! | ATCAAATGTACCATTTGAAT+AGG | - | chr4_1:69921340-69921359 | Msa0568310:intron | 25.0% |
| ! | TTCTTTATTGCCTATTCAAA+TGG | + | chr4_1:69921353-69921372 | None:intergenic | 25.0% |
| ! | TTCTTTATTGCCTATTCAAA+TGG | + | chr4_1:69921353-69921372 | None:intergenic | 25.0% |
| ! | TTATGCAATAGATAAAAACG+GGG | - | chr4_1:69921622-69921641 | Msa0568310:intron | 25.0% |
| !! | AAAACAGTTACTTTGATTCA+TGG | - | chr4_1:69921740-69921759 | Msa0568310:intron | 25.0% |
| !! | TTATAGTGATACATTGATTG+AGG | - | chr4_1:69921853-69921872 | Msa0568310:intron | 25.0% |
| ! | TGGGATGTAATTAAAGAAAT+AGG | + | chr4_1:69922032-69922051 | None:intergenic | 25.0% |
| ! | TGTACAATCAATCAATATAG+AGG | + | chr4_1:69922589-69922608 | None:intergenic | 25.0% |
| ! | ATAGTTTACATTTATAGTCG+AGG | - | chr4_1:69922793-69922812 | Msa0568310:intron | 25.0% |
| ! | TTTATTTCAAACAAAGTTGG+GGG | + | chr4_1:69922875-69922894 | None:intergenic | 25.0% |
| ! | GTTTATTTCAAACAAAGTTG+GGG | + | chr4_1:69922876-69922895 | None:intergenic | 25.0% |
| !!! | TCTTAAAACCTTTTTAAGAG+AGG | + | chr4_1:69922932-69922951 | None:intergenic | 25.0% |
| ! | TTGTTAAATAACAGCTATAG+CGG | - | chr4_1:69923000-69923019 | Msa0568310:intron | 25.0% |
| !! | TGTCTTTTTATCTTTTAGCA+GGG | + | chr4_1:69923160-69923179 | None:intergenic | 25.0% |
| !! | ATGTCTTTTTATCTTTTAGC+AGG | + | chr4_1:69923161-69923180 | None:intergenic | 25.0% |
| !! | GATGACAATTTTTACTAAAG+TGG | - | chr4_1:69923232-69923251 | Msa0568310:intron | 25.0% |
| !! | TTGTAACAAGCTTTTATTGT+AGG | + | chr4_1:69923498-69923517 | None:intergenic | 25.0% |
| !!! | TACAATAAAAGCTTGTTACA+AGG | - | chr4_1:69923497-69923516 | Msa0568310:intron | 25.0% |
| ! | TACAAATACATGTAAAGATG+AGG | + | chr4_1:69923865-69923884 | None:intergenic | 25.0% |
| ! | CATCTTTACATGTATTTGTA+TGG | - | chr4_1:69923865-69923884 | Msa0568310:intron | 25.0% |
| !!! | ACAAGATCACTCTTTTTTAT+TGG | + | chr4_1:69924641-69924660 | None:intergenic | 25.0% |
| ! | ACAAATTGAAATGGAGTTAA+AGG | + | chr4_1:69924865-69924884 | None:intergenic | 25.0% |
| !!! | CATTTCAATTTGTTAGCTTT+GGG | - | chr4_1:69924872-69924891 | Msa0568310:intron | 25.0% |
| ! | AAGAATTATTAGATTCGCAT+CGG | + | chr4_1:69924947-69924966 | None:intergenic | 25.0% |
| !!! | TTTTTGCTGTAAATTGAGTT+CGG | - | chr4_1:69925343-69925362 | Msa0568310:intron | 25.0% |
| !! | ACTCTATCTTCTTCTATTTT+GGG | - | chr4_1:69925420-69925439 | Msa0568310:five_prime_UTR | 25.0% |
| AATCTAATTGGAATGGATGA+AGG | + | chr4_1:69919325-69919344 | None:intergenic | 30.0% | |
| GAAGCAAAATCTAATTGGAA+TGG | + | chr4_1:69919332-69919351 | None:intergenic | 30.0% | |
| ATGAAAGAAAAAGAATGGAG+TGG | + | chr4_1:69919354-69919373 | None:intergenic | 30.0% | |
| ATTTCTCAAACAAATCTACC+AGG | - | chr4_1:69919372-69919391 | Msa0568310:three_prime_UTR | 30.0% | |
| !!! | TTCCATTCCTTATTTTATCG+AGG | - | chr4_1:69919489-69919508 | Msa0568310:three_prime_UTR | 30.0% |
| ATCCTCGATAAAATAAGGAA+TGG | + | chr4_1:69919494-69919513 | None:intergenic | 30.0% | |
| TAACGATCCTCGATAAAATA+AGG | + | chr4_1:69919499-69919518 | None:intergenic | 30.0% | |
| TGTTTAATTATAGCAGAACC+TGG | + | chr4_1:69919745-69919764 | None:intergenic | 30.0% | |
| CTGTGAACAGTGTAATTAAT+TGG | + | chr4_1:69919786-69919805 | None:intergenic | 30.0% | |
| !!! | AAAGCGAGGTTTTGTTTTTT+TGG | - | chr4_1:69919873-69919892 | Msa0568310:intron | 30.0% |
| TAAGCAAATTTGTAGATGCT+AGG | - | chr4_1:69919901-69919920 | Msa0568310:intron | 30.0% | |
| !! | ACTCTATGATTTTGATCTCA+TGG | + | chr4_1:69919932-69919951 | None:intergenic | 30.0% |
| AACATTCAACAGAATTTGGA+AGG | + | chr4_1:69919984-69920003 | None:intergenic | 30.0% | |
| TTGAATATAATCGCATGTGT+CGG | + | chr4_1:69920169-69920188 | None:intergenic | 30.0% | |
| TGACATCAACACTAATTAGA+AGG | + | chr4_1:69920210-69920229 | None:intergenic | 30.0% | |
| ! | GGTAAAAGCTAGCTTAATAT+TGG | + | chr4_1:69920572-69920591 | None:intergenic | 30.0% |
| !!! | ATTAAGCTAGCTTTTACCAT+TGG | - | chr4_1:69920574-69920593 | Msa0568310:intron | 30.0% |
| ! | ACACTTTTCCTTGAAATATG+CGG | + | chr4_1:69920656-69920675 | None:intergenic | 30.0% |
| TTATTTAATACGCTCGTACT+TGG | - | chr4_1:69920691-69920710 | Msa0568310:intron | 30.0% | |
| !!! | AAAATGGGAAGCACTTATTT+TGG | + | chr4_1:69920733-69920752 | None:intergenic | 30.0% |
| ! | AAAATAAGTGCTTCCCATTT+TGG | - | chr4_1:69920732-69920751 | Msa0568310:intron | 30.0% |
| CAAAATGTAAGGATCCAAAA+TGG | + | chr4_1:69920749-69920768 | None:intergenic | 30.0% | |
| CTGATATTACTATCTGTTGA+TGG | + | chr4_1:69920940-69920959 | None:intergenic | 30.0% | |
| ATACTTTCAAATTGACATGC+AGG | - | chr4_1:69921152-69921171 | Msa0568310:intron | 30.0% | |
| AATTTCTTGTCTTTGTTCAC+AGG | - | chr4_1:69921260-69921279 | Msa0568310:intron | 30.0% | |
| ATTTCTTGTCTTTGTTCACA+GGG | - | chr4_1:69921261-69921280 | Msa0568310:intron | 30.0% | |
| ! | GCTACACAATTTACATGTTT+TGG | + | chr4_1:69921299-69921318 | None:intergenic | 30.0% |
| ACTTGAATATGAACACTAGT+TGG | + | chr4_1:69921573-69921592 | None:intergenic | 30.0% | |
| TATGCAATAGATAAAAACGG+GGG | - | chr4_1:69921623-69921642 | Msa0568310:intron | 30.0% | |
| ! | CAAAGTAACTGTTTTGCAAT+AGG | + | chr4_1:69921735-69921754 | None:intergenic | 30.0% |
| AATCAGCAAGACTTGTAATA+TGG | + | chr4_1:69921766-69921785 | None:intergenic | 30.0% | |
| TTGATTCATGGCCATATTAT+AGG | - | chr4_1:69921795-69921814 | Msa0568310:intron | 30.0% | |
| AATCAGCAAGACCTATAATA+TGG | + | chr4_1:69921809-69921828 | None:intergenic | 30.0% | |
| ATATATTATAAGCTGCTCCA+AGG | - | chr4_1:69922073-69922092 | Msa0568310:intron | 30.0% | |
| TTCTACATACCAATTCATGA+TGG | - | chr4_1:69922309-69922328 | Msa0568310:intron | 30.0% | |
| AACAAAAGATCCGTAAATGT+GGG | + | chr4_1:69922473-69922492 | None:intergenic | 30.0% | |
| GAATATTTCTTCAACCAGTT+AGG | - | chr4_1:69922502-69922521 | Msa0568310:intron | 30.0% | |
| GATTGATTGTACATATATGG+TGG | - | chr4_1:69922596-69922615 | Msa0568310:intron | 30.0% | |
| CTCTCATATTGTTAAAGTAG+AGG | + | chr4_1:69922664-69922683 | None:intergenic | 30.0% | |
| ! | CATTTGCTTTCTTGTTATGT+TGG | - | chr4_1:69922824-69922843 | Msa0568310:CDS | 30.0% |
| !! | TAAAACCTTTTTAAGAGAGG+AGG | + | chr4_1:69922929-69922948 | None:intergenic | 30.0% |
| AGAAATAATTAGGTGCTTAC+TGG | - | chr4_1:69922949-69922968 | Msa0568310:intron | 30.0% | |
| ! | TTATCAAATAGGTGCTATAG+TGG | - | chr4_1:69923068-69923087 | Msa0568310:intron | 30.0% |
| CAGTTAATATGCTTCAATTC+AGG | + | chr4_1:69923419-69923438 | None:intergenic | 30.0% | |
| CAAACAGAATAATAGGAGTT+AGG | + | chr4_1:69923601-69923620 | None:intergenic | 30.0% | |
| AATGACAAGTTTATGCATCA+GGG | + | chr4_1:69923737-69923756 | None:intergenic | 30.0% | |
| AAATGACAAGTTTATGCATC+AGG | + | chr4_1:69923738-69923757 | None:intergenic | 30.0% | |
| ! | CATAAACTTGTCATTTCTAC+AGG | - | chr4_1:69923742-69923761 | Msa0568310:intron | 30.0% |
| TACATGTATTTGTATGGGAA+TGG | - | chr4_1:69923871-69923890 | Msa0568310:intron | 30.0% | |
| ! | TTTCTAAATTTGGGATGCTT+CGG | + | chr4_1:69924111-69924130 | None:intergenic | 30.0% |
| ! | AAGTTTGGTGACCAAAATTA+TGG | + | chr4_1:69924266-69924285 | None:intergenic | 30.0% |
| !!! | CTGTTTTTTCTTACAGAATC+TGG | + | chr4_1:69924472-69924491 | None:intergenic | 30.0% |
| CAGATTCTGTAAGAAAAAAC+AGG | - | chr4_1:69924470-69924489 | Msa0568310:intron | 30.0% | |
| CGACAATGTAAATACATACA+AGG | + | chr4_1:69924502-69924521 | None:intergenic | 30.0% | |
| TGTATGTATTTACATTGTCG+TGG | - | chr4_1:69924502-69924521 | Msa0568310:intron | 30.0% | |
| ! | ACTAATTGATTCAGAACACT+AGG | + | chr4_1:69924555-69924574 | None:intergenic | 30.0% |
| !!! | TCACTCTTTTTTATTGGAGA+AGG | + | chr4_1:69924635-69924654 | None:intergenic | 30.0% |
| CCAAAGCTAACAAATTGAAA+TGG | + | chr4_1:69924874-69924893 | None:intergenic | 30.0% | |
| !! | CCATTTCAATTTGTTAGCTT+TGG | - | chr4_1:69924871-69924890 | Msa0568310:intron | 30.0% |
| ATAATTCTTCTGTATCTTGC+AGG | - | chr4_1:69924958-69924977 | Msa0568310:intron | 30.0% | |
| ! | GCAAATTGGCAACTTTTTAA+AGG | - | chr4_1:69924988-69925007 | Msa0568310:intron | 30.0% |
| !! | AACTTTTTAAAGGCAGAAGA+TGG | - | chr4_1:69924998-69925017 | Msa0568310:intron | 30.0% |
| GAAATTCAAACTGTTGCTAT+TGG | + | chr4_1:69925221-69925240 | None:intergenic | 30.0% | |
| TAGCAACAGTTTGAATTTCT+AGG | - | chr4_1:69925222-69925241 | Msa0568310:intron | 30.0% | |
| TACAACATACAATCTCTTAC+AGG | + | chr4_1:69925393-69925412 | None:intergenic | 30.0% | |
| ! | CACTCTATCTTCTTCTATTT+TGG | - | chr4_1:69925419-69925438 | Msa0568310:five_prime_UTR | 30.0% |
| GTGTTAGTTAGAGTTGAACA+AGG | + | chr4_1:69919289-69919308 | None:intergenic | 35.0% | |
| GAGTGGAAGCAAAATCTAAT+TGG | + | chr4_1:69919337-69919356 | None:intergenic | 35.0% | |
| TTATCGAGGATCGTTAATTG+AGG | - | chr4_1:69919503-69919522 | Msa0568310:three_prime_UTR | 35.0% | |
| TTAGCATCCATTACATACAG+CGG | + | chr4_1:69919565-69919584 | None:intergenic | 35.0% | |
| TGTTCAAATGTTGCATCTAC+CGG | - | chr4_1:69919588-69919607 | Msa0568310:three_prime_UTR | 35.0% | |
| GTTATTCTCACACAATTCTC+GGG | + | chr4_1:69919625-69919644 | None:intergenic | 35.0% | |
| GGTTATTCTCACACAATTCT+CGG | + | chr4_1:69919626-69919645 | None:intergenic | 35.0% | |
| GAGAATTGTGTGAGAATAAC+CGG | - | chr4_1:69919625-69919644 | Msa0568310:three_prime_UTR | 35.0% | |
| !!! | CTGAAGCTTTTTCAGTTTAC+CGG | + | chr4_1:69919668-69919687 | None:intergenic | 35.0% |
| TGAAAAAGCTTCAGACGATT+CGG | - | chr4_1:69919674-69919693 | Msa0568310:exon | 35.0% | |
| GTGATTAATATGCAAAGGGA+GGG | - | chr4_1:69920021-69920040 | Msa0568310:intron | 35.0% | |
| CAATAGAATGTAACAGTGGA+TGG | + | chr4_1:69920327-69920346 | None:intergenic | 35.0% | |
| GCTACAATAGAATGTAACAG+TGG | + | chr4_1:69920331-69920350 | None:intergenic | 35.0% | |
| AATGCTATTCAAGCATCCAA+TGG | + | chr4_1:69920593-69920612 | None:intergenic | 35.0% | |
| GCTTGAATAGCATTTACTTC+TGG | - | chr4_1:69920599-69920618 | Msa0568310:intron | 35.0% | |
| GGAATTTACCGCATATTTCA+AGG | - | chr4_1:69920645-69920664 | Msa0568310:intron | 35.0% | |
| GCATATTTCAAGGAAAAGTG+TGG | - | chr4_1:69920655-69920674 | Msa0568310:intron | 35.0% | |
| TACTCTTGTAGCTTCAACAT+TGG | - | chr4_1:69920779-69920798 | Msa0568310:intron | 35.0% | |
| AGATTCTGCCGTATTTAAGT+GGG | - | chr4_1:69921039-69921058 | Msa0568310:intron | 35.0% | |
| ATGTTGTTGGTCAGTTTCTT+TGG | - | chr4_1:69921072-69921091 | Msa0568310:intron | 35.0% | |
| ATCATACTTGTATTGCATGC+CGG | + | chr4_1:69921116-69921135 | None:intergenic | 35.0% | |
| AAATTGACATGCAGGAATGA+TGG | - | chr4_1:69921160-69921179 | Msa0568310:intron | 35.0% | |
| AATTGACATGCAGGAATGAT+GGG | - | chr4_1:69921161-69921180 | Msa0568310:intron | 35.0% | |
| GCCAAATGTACCATTTGAAT+AGG | - | chr4_1:69921481-69921500 | Msa0568310:intron | 35.0% | |
| GCCTATTCAAATGGTACATT+TGG | + | chr4_1:69921344-69921363 | None:intergenic | 35.0% | |
| ATGCAATAGATAAAAACGGG+GGG | - | chr4_1:69921624-69921643 | Msa0568310:intron | 35.0% | |
| ! | TGATACATTGATTGAGGAAG+AGG | - | chr4_1:69921859-69921878 | Msa0568310:intron | 35.0% |
| GCTGATATATTCAAGCTCTA+TGG | - | chr4_1:69921899-69921918 | Msa0568310:intron | 35.0% | |
| TCTAAACGTTCAGACAACTT+AGG | + | chr4_1:69922005-69922024 | None:intergenic | 35.0% | |
| !! | AAGCAGAAAATAAGGGTACT+GGG | + | chr4_1:69922051-69922070 | None:intergenic | 35.0% |
| GCTGAAATACCAATTCATGT+TGG | - | chr4_1:69922263-69922282 | Msa0568310:intron | 35.0% | |
| ! | TGTAGAGTACCAACATGAAT+TGG | + | chr4_1:69922275-69922294 | None:intergenic | 35.0% |
| TGGTACTCTACAATTAACAG+TGG | - | chr4_1:69922283-69922302 | Msa0568310:intron | 35.0% | |
| TGTCAAGTACCATCATGAAT+TGG | + | chr4_1:69922321-69922340 | None:intergenic | 35.0% | |
| CAACAAAAGATCCGTAAATG+TGG | + | chr4_1:69922474-69922493 | None:intergenic | 35.0% | |
| TTACTTGCAGAAATCCTAAC+TGG | + | chr4_1:69922519-69922538 | None:intergenic | 35.0% | |
| TTTCATATGATCGTATCAGC+TGG | - | chr4_1:69922761-69922780 | Msa0568310:intron | 35.0% | |
| TTCATATGATCGTATCAGCT+GGG | - | chr4_1:69922762-69922781 | Msa0568310:intron | 35.0% | |
| TTACATTTATAGTCGAGGTC+TGG | - | chr4_1:69922798-69922817 | Msa0568310:intron | 35.0% | |
| !!! | GTTATGTTGGCTTCTAGTTT+TGG | - | chr4_1:69922837-69922856 | Msa0568310:CDS | 35.0% |
| !!! | AGAGAGGAGGATTTGTTTTA+GGG | + | chr4_1:69922916-69922935 | None:intergenic | 35.0% |
| !! | AAGAGAGGAGGATTTGTTTT+AGG | + | chr4_1:69922917-69922936 | None:intergenic | 35.0% |
| CAAATCCTCCTCTCTTAAAA+AGG | - | chr4_1:69922921-69922940 | Msa0568310:intron | 35.0% | |
| ACATGTTGAGTCACTTGATA+GGG | + | chr4_1:69923326-69923345 | None:intergenic | 35.0% | |
| AACATGTTGAGTCACTTGAT+AGG | + | chr4_1:69923327-69923346 | None:intergenic | 35.0% | |
| ! | AAAGCAACATGTCTTTTAGC+AGG | - | chr4_1:69923375-69923394 | Msa0568310:intron | 35.0% |
| ! | AAGCAACATGTCTTTTAGCA+GGG | - | chr4_1:69923376-69923395 | Msa0568310:intron | 35.0% |
| AACAGCATAATGTCTGATGA+TGG | - | chr4_1:69923547-69923566 | Msa0568310:CDS | 35.0% | |
| TTGTTTACCATTTCAGACTG+AGG | - | chr4_1:69923696-69923715 | Msa0568310:CDS | 35.0% | |
| ! | AAACTTGTCATTTCTACAGG+TGG | - | chr4_1:69923745-69923764 | Msa0568310:intron | 35.0% |
| ! | TTCTAAATTTGGGATGCTTC+GGG | + | chr4_1:69924110-69924129 | None:intergenic | 35.0% |
| !! | ATTCGGTGTAATCAATGCAT+TGG | + | chr4_1:69924166-69924185 | None:intergenic | 35.0% |
| !! | TCTGATCTTTTTGAAGAGAG+AGG | - | chr4_1:69924355-69924374 | Msa0568310:intron | 35.0% |
| TTCTAATGAGACTCTAGCAT+TGG | + | chr4_1:69924398-69924417 | None:intergenic | 35.0% | |
| ! | CTAGGAAGCATATAACATGA+AGG | + | chr4_1:69924702-69924721 | None:intergenic | 35.0% |
| TGCAGATATAGCAACAAAAC+TGG | - | chr4_1:69924768-69924787 | Msa0568310:intron | 35.0% | |
| GCAGATATAGCAACAAAACT+GGG | - | chr4_1:69924769-69924788 | Msa0568310:intron | 35.0% | |
| ! | ACAAATCAGACGCATCTTTT+CGG | + | chr4_1:69924795-69924814 | None:intergenic | 35.0% |
| TCCAACTGAAATTGCAATTG+AGG | - | chr4_1:69924816-69924835 | Msa0568310:intron | 35.0% | |
| ACCTCAATTGCAATTTCAGT+TGG | + | chr4_1:69924820-69924839 | None:intergenic | 35.0% | |
| !! | TTTTTAAAGGCAGAAGATGG+TGG | - | chr4_1:69925001-69925020 | Msa0568310:CDS | 35.0% |
| CAATTTGCGGTTTGCAATTA+AGG | - | chr4_1:69925090-69925109 | Msa0568310:CDS | 35.0% | |
| AAAGAGATACTGAACTGACC+TGG | + | chr4_1:69919393-69919412 | None:intergenic | 40.0% | |
| GAATGGAAACCGAAACCAAA+AGG | + | chr4_1:69919477-69919496 | None:intergenic | 40.0% | |
| TGTATTGCCGCTGTATGTAA+TGG | - | chr4_1:69919555-69919574 | Msa0568310:three_prime_UTR | 40.0% | |
| TAACCGGTTGTTCTTTGAGT+CGG | - | chr4_1:69919641-69919660 | Msa0568310:three_prime_UTR | 40.0% | |
| CGTGATTAATATGCAAAGGG+AGG | - | chr4_1:69920020-69920039 | Msa0568310:intron | 40.0% | |
| !! | CAAAGGGAGGGTATTTAGAA+TGG | - | chr4_1:69920033-69920052 | Msa0568310:intron | 40.0% |
| ! | ACTTTGGATCAGAAGTGTGT+CGG | + | chr4_1:69920111-69920130 | None:intergenic | 40.0% |
| TTCTGATCCAAAGTGTGTTC+AGG | - | chr4_1:69920117-69920136 | Msa0568310:intron | 40.0% | |
| ATCCAATCACAAGTAGCTCA+TGG | - | chr4_1:69920397-69920416 | Msa0568310:intron | 40.0% | |
| TTCCATGAGCTACTTGTGAT+TGG | + | chr4_1:69920402-69920421 | None:intergenic | 40.0% | |
| ! | GTGACTATTAGGGGAGTTTT+GGG | + | chr4_1:69920492-69920511 | None:intergenic | 40.0% |
| ! | TGTGACTATTAGGGGAGTTT+TGG | + | chr4_1:69920493-69920512 | None:intergenic | 40.0% |
| !!! | TGGGAAGCACTTATTTTGGT+AGG | + | chr4_1:69920729-69920748 | None:intergenic | 40.0% |
| GTAGCTTCAACATTGGAATC+TGG | - | chr4_1:69920786-69920805 | Msa0568310:intron | 40.0% | |
| CTTCAACATTGGAATCTGGA+GGG | - | chr4_1:69920790-69920809 | Msa0568310:intron | 40.0% | |
| CAGATTCTGCCGTATTTAAG+TGG | - | chr4_1:69921038-69921057 | Msa0568310:intron | 40.0% | |
| ATACAGCGCCCACTTAAATA+CGG | + | chr4_1:69921050-69921069 | None:intergenic | 40.0% | |
| TCATACTTGTATTGCATGCC+GGG | + | chr4_1:69921115-69921134 | None:intergenic | 40.0% | |
| AATAGATAAAAACGGGGGGA+GGG | - | chr4_1:69921628-69921647 | Msa0568310:intron | 40.0% | |
| AAAACTAGAGCAAAATCCCC+AGG | + | chr4_1:69921664-69921683 | None:intergenic | 40.0% | |
| ! | TGTTTTGCAATAGGCAGATG+TGG | + | chr4_1:69921726-69921745 | None:intergenic | 40.0% |
| TTGATTGAGGAAGAGGTTGA+TGG | - | chr4_1:69921866-69921885 | Msa0568310:intron | 40.0% | |
| AGAATCTTTCTTTCGCGAGA+AGG | - | chr4_1:69921922-69921941 | Msa0568310:intron | 40.0% | |
| ! | GAAGCAGAAAATAAGGGTAC+TGG | + | chr4_1:69922052-69922071 | None:intergenic | 40.0% |
| AAAGATCCGTAAATGTGGGA+CGG | + | chr4_1:69922469-69922488 | None:intergenic | 40.0% | |
| ! | TAGTTTGTAGAGGCAGCAAA+TGG | - | chr4_1:69922546-69922565 | Msa0568310:intron | 40.0% |
| AGTTTGTAGAGGCAGCAAAT+GGG | - | chr4_1:69922547-69922566 | Msa0568310:intron | 40.0% | |
| CAAACCTGTAAAGTTGGACA+GGG | + | chr4_1:69922726-69922745 | None:intergenic | 40.0% | |
| TGTTGCCAAACCTGTAAAGT+TGG | + | chr4_1:69922732-69922751 | None:intergenic | 40.0% | |
| TTGTGTGTGATTAGTGACCA+GGG | - | chr4_1:69923119-69923138 | Msa0568310:intron | 40.0% | |
| ! | TAGGGGTGTACATCAATACA+TGG | + | chr4_1:69923308-69923327 | None:intergenic | 40.0% |
| CATGTTGAGTCACTTGATAG+GGG | + | chr4_1:69923325-69923344 | None:intergenic | 40.0% | |
| ! | AGCAACATGTCTTTTAGCAG+GGG | - | chr4_1:69923377-69923396 | Msa0568310:intron | 40.0% |
| !! | ATGTCTGATGATGGCATGTA+CGG | - | chr4_1:69923556-69923575 | Msa0568310:intron | 40.0% |
| TTCAATGCCTCAGTCTGAAA+TGG | + | chr4_1:69923706-69923725 | None:intergenic | 40.0% | |
| CTGTTGTACGGCCTATTAAT+TGG | - | chr4_1:69923773-69923792 | Msa0568310:intron | 40.0% | |
| TGCCAGGAAATATATGCACA+AGG | - | chr4_1:69923896-69923915 | Msa0568310:intron | 40.0% | |
| GCCAGGAAATATATGCACAA+GGG | - | chr4_1:69923897-69923916 | Msa0568310:CDS | 40.0% | |
| CCAGGAAATATATGCACAAG+GGG | - | chr4_1:69923898-69923917 | Msa0568310:CDS | 40.0% | |
| CAGGAAATATATGCACAAGG+GGG | - | chr4_1:69923899-69923918 | Msa0568310:CDS | 40.0% | |
| TGTTTGGTTAGATGTACCAG+TGG | - | chr4_1:69923926-69923945 | Msa0568310:CDS | 40.0% | |
| ! | TCTAAATTTGGGATGCTTCG+GGG | + | chr4_1:69924109-69924128 | None:intergenic | 40.0% |
| ACCAGTTGTAATTCACATGC+AGG | - | chr4_1:69924318-69924337 | Msa0568310:intron | 40.0% | |
| ! | GAAATGGAGTTAAAGGCATG+AGG | + | chr4_1:69924858-69924877 | None:intergenic | 40.0% |
| !! | TTTGTTAGCTTTGGGCAAAC+TGG | - | chr4_1:69924880-69924899 | Msa0568310:intron | 40.0% |
| TGGGCAAACTGGAATATTCA+CGG | - | chr4_1:69924891-69924910 | Msa0568310:intron | 40.0% | |
| TGCAAGATAGTAGTGCGATT+TGG | - | chr4_1:69925027-69925046 | Msa0568310:CDS | 40.0% | |
| !! | TTCTATTTTGGGTCTCCCAT+GGG | - | chr4_1:69925431-69925450 | Msa0568310:five_prime_UTR | 40.0% |
| TTCTCACACAATTCTCGGGT+CGG | + | chr4_1:69919621-69919640 | None:intergenic | 45.0% | |
| TCGGTGCAAGAAGGTTTCTA+CGG | - | chr4_1:69919693-69919712 | Msa0568310:CDS | 45.0% | |
| !! | TCAGAAGTGTGTCGGTGTTA+CGG | + | chr4_1:69920103-69920122 | None:intergenic | 45.0% |
| GTCAACACCTGAACACACTT+TGG | + | chr4_1:69920127-69920146 | None:intergenic | 45.0% | |
| !! | TGTGTTCAGGTGTTGACATG+TGG | - | chr4_1:69920130-69920149 | Msa0568310:intron | 45.0% |
| CAAGCTGGTGTGACTATTAG+GGG | + | chr4_1:69920501-69920520 | None:intergenic | 45.0% | |
| CCAAGCTGGTGTGACTATTA+GGG | + | chr4_1:69920502-69920521 | None:intergenic | 45.0% | |
| TATATTCTCAGGTGCCAAGC+TGG | + | chr4_1:69920516-69920535 | None:intergenic | 45.0% | |
| GCTTCAACATTGGAATCTGG+AGG | - | chr4_1:69920789-69920808 | Msa0568310:intron | 45.0% | |
| AGAACCAACTCTTCCTCAAG+GGG | + | chr4_1:69920825-69920844 | None:intergenic | 45.0% | |
| CAGAACCAACTCTTCCTCAA+GGG | + | chr4_1:69920826-69920845 | None:intergenic | 45.0% | |
| TCAGAACCAACTCTTCCTCA+AGG | + | chr4_1:69920827-69920846 | None:intergenic | 45.0% | |
| !! | TGAGGAAGAGTTGGTTCTGA+AGG | - | chr4_1:69920827-69920846 | Msa0568310:intron | 45.0% |
| ! | GGGCGCTGTATATATGTTGT+TGG | - | chr4_1:69921059-69921078 | Msa0568310:intron | 45.0% |
| GTTGATGTCTCGTGATTACC+CGG | - | chr4_1:69921094-69921113 | Msa0568310:intron | 45.0% | |
| CAATAGATAAAAACGGGGGG+AGG | - | chr4_1:69921627-69921646 | Msa0568310:intron | 45.0% | |
| ATAGATAAAAACGGGGGGAG+GGG | - | chr4_1:69921629-69921648 | Msa0568310:intron | 45.0% | |
| ATCTTTCTTTCGCGAGAAGG+AGG | - | chr4_1:69921925-69921944 | Msa0568310:intron | 45.0% | |
| TATAAGCTGCTCCAAGGAGA+CGG | - | chr4_1:69922079-69922098 | Msa0568310:intron | 45.0% | |
| ATATTGATCTCCCGTCTCCT+TGG | + | chr4_1:69922093-69922112 | None:intergenic | 45.0% | |
| TTGACACTTAGCAGTGTCAC+AGG | - | chr4_1:69922335-69922354 | Msa0568310:intron | 45.0% | |
| ! | AGTTCCTTTTACCGAGTCAG+TGG | - | chr4_1:69922438-69922457 | Msa0568310:intron | 45.0% |
| !! | CATTCCACTGACTCGGTAAA+AGG | + | chr4_1:69922445-69922464 | None:intergenic | 45.0% |
| GAATGTCCGTCCCACATTTA+CGG | - | chr4_1:69922460-69922479 | Msa0568310:intron | 45.0% | |
| TAGTAGCAAGCTGGTAAGAG+GGG | + | chr4_1:69922629-69922648 | None:intergenic | 45.0% | |
| CTAGTAGCAAGCTGGTAAGA+GGG | + | chr4_1:69922630-69922649 | None:intergenic | 45.0% | |
| TGTGACATGGGTGAACAAAC+AGG | + | chr4_1:69922687-69922706 | None:intergenic | 45.0% | |
| TTGTTCACCCATGTCACAGA+TGG | - | chr4_1:69922689-69922708 | Msa0568310:intron | 45.0% | |
| CCAAACCTGTAAAGTTGGAC+AGG | + | chr4_1:69922727-69922746 | None:intergenic | 45.0% | |
| CCTGTCCAACTTTACAGGTT+TGG | - | chr4_1:69922724-69922743 | Msa0568310:intron | 45.0% | |
| CATTTATAGTCGAGGTCTGG+AGG | - | chr4_1:69922801-69922820 | Msa0568310:CDS | 45.0% | |
| GTTGTGTGTGATTAGTGACC+AGG | - | chr4_1:69923118-69923137 | Msa0568310:intron | 45.0% | |
| ! | ATCTTTTAGCAGGGAGTCCA+TGG | + | chr4_1:69923151-69923170 | None:intergenic | 45.0% |
| ! | TCTTTTAGCAGGGGAGTTCA+TGG | - | chr4_1:69923386-69923405 | Msa0568310:intron | 45.0% |
| !! | GAATTGTTTCGGCTAGCCTA+TGG | - | chr4_1:69923645-69923664 | Msa0568310:intron | 45.0% |
| TGACTGTGTGACAGAACCAT+AGG | + | chr4_1:69923664-69923683 | None:intergenic | 45.0% | |
| ! | CTTGTCATTTCTACAGGTGG+AGG | - | chr4_1:69923748-69923767 | Msa0568310:intron | 45.0% |
| !! | TTGTATGGGAATGGATTGCC+AGG | - | chr4_1:69923880-69923899 | Msa0568310:intron | 45.0% |
| CCCCTTGTGCATATATTTCC+TGG | + | chr4_1:69923901-69923920 | None:intergenic | 45.0% | |
| CTGCTTCATCGTGTAGAAGA+GGG | + | chr4_1:69923995-69924014 | None:intergenic | 45.0% | |
| ! | CTAAATTTGGGATGCTTCGG+GGG | + | chr4_1:69924108-69924127 | None:intergenic | 45.0% |
| GCCTGCATGTGAATTACAAC+TGG | + | chr4_1:69924322-69924341 | None:intergenic | 45.0% | |
| ATTAAGGCCATGCTGTTGTG+CGG | - | chr4_1:69925106-69925125 | Msa0568310:CDS | 45.0% | |
| AGCCTTTATCCCACTAAGTG+GGG | + | chr4_1:69925294-69925313 | None:intergenic | 45.0% | |
| CAGCCTTTATCCCACTAAGT+GGG | + | chr4_1:69925295-69925314 | None:intergenic | 45.0% | |
| TCAGCCTTTATCCCACTAAG+TGG | + | chr4_1:69925296-69925315 | None:intergenic | 45.0% | |
| !! | CTTCTATTTTGGGTCTCCCA+TGG | - | chr4_1:69925430-69925449 | Msa0568310:five_prime_UTR | 45.0% |
| AGGCACCAATTAAGACCCAT+GGG | + | chr4_1:69925449-69925468 | None:intergenic | 45.0% | |
| ! | AAGGCACCAATTAAGACCCA+TGG | + | chr4_1:69925450-69925469 | None:intergenic | 45.0% |
| !! | ATTAATTGAAAAAAAAAAAA+AGG | - | chr4_1:69920624-69920643 | Msa0568310:intron | 5.0% |
| !! | AAAAAATAATTTCTAAATTT+GGG | + | chr4_1:69924120-69924139 | None:intergenic | 5.0% |
| !! | TAAAAAATAATTTCTAAATT+TGG | + | chr4_1:69924121-69924140 | None:intergenic | 5.0% |
| CACAGTGCACACTGAAACGA+AGG | + | chr4_1:69919537-69919556 | None:intergenic | 50.0% | |
| TCTCACACAATTCTCGGGTC+GGG | + | chr4_1:69919620-69919639 | None:intergenic | 50.0% | |
| GGTCCGACTCAAAGAACAAC+CGG | + | chr4_1:69919647-69919666 | None:intergenic | 50.0% | |
| GGTTGTTCTTTGAGTCGGAC+CGG | - | chr4_1:69919646-69919665 | Msa0568310:three_prime_UTR | 50.0% | |
| !! | TCAGACGATTCGGTGCAAGA+AGG | - | chr4_1:69919684-69919703 | Msa0568310:CDS | 50.0% |
| !! | CAGAAGTGTGTCGGTGTTAC+GGG | + | chr4_1:69920102-69920121 | None:intergenic | 50.0% |
| CCCTAATAGTCACACCAGCT+TGG | - | chr4_1:69920499-69920518 | Msa0568310:intron | 50.0% | |
| GCCAAGCTGGTGTGACTATT+AGG | + | chr4_1:69920503-69920522 | None:intergenic | 50.0% | |
| AGGGCATAAGTTTCCCCTTG+AGG | - | chr4_1:69920809-69920828 | Msa0568310:intron | 50.0% | |
| GTTTCCCCTTGAGGAAGAGT+TGG | - | chr4_1:69920818-69920837 | Msa0568310:intron | 50.0% | |
| !! | ATGCAGGAATGATGGGCTCT+GGG | - | chr4_1:69921168-69921187 | Msa0568310:intron | 50.0% |
| TAGATAAAAACGGGGGGAGG+GGG | - | chr4_1:69921630-69921649 | Msa0568310:intron | 50.0% | |
| GAGAAGGAGGTCAGTTGGAA+AGG | - | chr4_1:69921938-69921957 | Msa0568310:intron | 50.0% | |
| ATAAGCTGCTCCAAGGAGAC+GGG | - | chr4_1:69922080-69922099 | Msa0568310:intron | 50.0% | |
| ! | GCACTGACACTTCACATCGA+AGG | + | chr4_1:69922230-69922249 | None:intergenic | 50.0% |
| AGTAGCAAGCTGGTAAGAGG+GGG | + | chr4_1:69922628-69922647 | None:intergenic | 50.0% | |
| CCTAGTAGCAAGCTGGTAAG+AGG | + | chr4_1:69922631-69922650 | None:intergenic | 50.0% | |
| !! | CCTCTTACCAGCTTGCTACT+AGG | - | chr4_1:69922628-69922647 | Msa0568310:intron | 50.0% |
| TCACCCATGTCACAGATGGA+CGG | - | chr4_1:69922693-69922712 | Msa0568310:intron | 50.0% | |
| ACCTGTAAAGTTGGACAGGG+CGG | + | chr4_1:69922723-69922742 | None:intergenic | 50.0% | |
| ! | TGCACAAGGGGGTTAGTGTT+TGG | - | chr4_1:69923910-69923929 | Msa0568310:CDS | 50.0% |
| ! | AGATGTACCAGTGGAAGCAC+TGG | - | chr4_1:69923935-69923954 | Msa0568310:CDS | 50.0% |
| GCCAAAAGAATTGCAGCCGT+GGG | - | chr4_1:69923957-69923976 | Msa0568310:intron | 50.0% | |
| ! | TCCCACGGCTGCAATTCTTT+TGG | + | chr4_1:69923961-69923980 | None:intergenic | 50.0% |
| AGGGCGAGAATTAGTTCCCA+CGG | + | chr4_1:69923976-69923995 | None:intergenic | 50.0% | |
| CCTGCTTCATCGTGTAGAAG+AGG | + | chr4_1:69923996-69924015 | None:intergenic | 50.0% | |
| CCTCTTCTACACGATGAAGC+AGG | - | chr4_1:69923993-69924012 | Msa0568310:intron | 50.0% | |
| AGCAGGAGATGCATACACTG+CGG | - | chr4_1:69924010-69924029 | Msa0568310:intron | 50.0% | |
| !! | AAGGTGCTTAAAGAGTGCCC+CGG | - | chr4_1:69924206-69924225 | Msa0568310:intron | 50.0% |
| AAATGTTAACGAGTGCCCCC+GGG | + | chr4_1:69924227-69924246 | None:intergenic | 50.0% | |
| GAAATGTTAACGAGTGCCCC+CGG | + | chr4_1:69924228-69924247 | None:intergenic | 50.0% | |
| !! | TGAGACTCTAGCATTGGCGT+TGG | + | chr4_1:69924392-69924411 | None:intergenic | 50.0% |
| TTGCAGGCGCTAGAGCAAAT+TGG | - | chr4_1:69924974-69924993 | Msa0568310:intron | 50.0% | |
| AACAACACCGCACAACAGCA+TGG | + | chr4_1:69925116-69925135 | None:intergenic | 50.0% | |
| GACCCCACTTAGTGGGATAA+AGG | - | chr4_1:69925289-69925308 | Msa0568310:intron | 50.0% | |
| GGTCTCCCATGGGTCTTAAT+TGG | - | chr4_1:69925441-69925460 | Msa0568310:five_prime_UTR | 50.0% | |
| TTCTCGGGTCGGGTAAGAAC+CGG | + | chr4_1:69919610-69919629 | None:intergenic | 55.0% | |
| !! | CATGCAGGAATGATGGGCTC+TGG | - | chr4_1:69921167-69921186 | Msa0568310:intron | 55.0% |
| !! | GGCTCTGGGAAGACAACTGT+GGG | - | chr4_1:69921182-69921201 | Msa0568310:intron | 55.0% |
| !! | GCTCTGGGAAGACAACTGTG+GGG | - | chr4_1:69921183-69921202 | Msa0568310:intron | 55.0% |
| TTCGCGAGAAGGAGGTCAGT+TGG | - | chr4_1:69921933-69921952 | Msa0568310:intron | 55.0% | |
| !! | AAGCACTGACACGTCGACAC+CGG | - | chr4_1:69922114-69922133 | Msa0568310:intron | 55.0% |
| CACTTAGCAGTGTCACAGGC+AGG | - | chr4_1:69922339-69922358 | Msa0568310:intron | 55.0% | |
| ! | GGACGGACATTCCACTGACT+CGG | + | chr4_1:69922452-69922471 | None:intergenic | 55.0% |
| GTAGAGGCAGCAAATGGGCA+TGG | - | chr4_1:69922552-69922571 | Msa0568310:intron | 55.0% | |
| ACTCGCTCCTAGTAGCAAGC+TGG | + | chr4_1:69922638-69922657 | None:intergenic | 55.0% | |
| CCACCGTCCATCTGTGACAT+GGG | + | chr4_1:69922699-69922718 | None:intergenic | 55.0% | |
| TCCACCGTCCATCTGTGACA+TGG | + | chr4_1:69922700-69922719 | None:intergenic | 55.0% | |
| ACCGCCCTGTCCAACTTTAC+AGG | - | chr4_1:69922719-69922738 | Msa0568310:intron | 55.0% | |
| GCTGTATCGCTACAGCGTAG+CGG | - | chr4_1:69923024-69923043 | Msa0568310:intron | 55.0% | |
| TAGCAGGGAGTCCATGGCAT+AGG | + | chr4_1:69923145-69923164 | None:intergenic | 55.0% | |
| !! | CAGGTGGAGGTGCTGTTGTA+CGG | - | chr4_1:69923761-69923780 | Msa0568310:intron | 55.0% |
| ! | CTTTTGGCCAGTGCTTCCAC+TGG | + | chr4_1:69923945-69923964 | None:intergenic | 55.0% |
| GGCCAAAAGAATTGCAGCCG+TGG | - | chr4_1:69923956-69923975 | Msa0568310:intron | 55.0% | |
| !! | AGGTGCTTAAAGAGTGCCCC+GGG | - | chr4_1:69924207-69924226 | Msa0568310:intron | 55.0% |
| AATGTTAACGAGTGCCCCCG+GGG | + | chr4_1:69924226-69924245 | None:intergenic | 55.0% | |
| CACTAAGTGGGGTCGTCAAC+CGG | + | chr4_1:69925283-69925302 | None:intergenic | 55.0% | |
| GGTTGACGACCCCACTTAGT+GGG | - | chr4_1:69925282-69925301 | Msa0568310:intron | 55.0% | |
| !! | GGGCTCTGGGAAGACAACTG+TGG | - | chr4_1:69921181-69921200 | Msa0568310:intron | 60.0% |
| GGGAGGGGGTCAGTTATCCT+GGG | - | chr4_1:69921644-69921663 | Msa0568310:intron | 60.0% | |
| GGAGGGGGTCAGTTATCCTG+GGG | - | chr4_1:69921645-69921664 | Msa0568310:intron | 60.0% | |
| AGCAAGCTGGTAAGAGGGGG+TGG | + | chr4_1:69922625-69922644 | None:intergenic | 60.0% | |
| CCCATGTCACAGATGGACGG+TGG | - | chr4_1:69922696-69922715 | Msa0568310:intron | 60.0% | |
| AGTGACCAGGGCCTATGCCA+TGG | - | chr4_1:69923131-69923150 | Msa0568310:intron | 60.0% | |
| !! | GGTGCTTAAAGAGTGCCCCG+GGG | - | chr4_1:69924208-69924227 | Msa0568310:intron | 60.0% |
| !! | GTGCTTAAAGAGTGCCCCGG+GGG | - | chr4_1:69924209-69924228 | Msa0568310:intron | 60.0% |
| CGGTTGACGACCCCACTTAG+TGG | - | chr4_1:69925281-69925300 | Msa0568310:intron | 60.0% | |
| GGGGAGGGGGTCAGTTATCC+TGG | - | chr4_1:69921643-69921662 | Msa0568310:intron | 65.0% | |
| GGAGTCCATGGCATAGGCCC+TGG | + | chr4_1:69923139-69923158 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69919275 | 69925470 | 69919275 | ID=Msa0568310;Name=Msa0568310 |
| chr4_1 | mRNA | 69919275 | 69925470 | 69919275 | ID=Msa0568310-mRNA-1;Parent=Msa0568310;Name=Msa0568310-mRNA-1;_AED=0.26;_eAED=0.26;_QI=147|0.77|0.9|1|0.88|0.9|10|405|237 |
| chr4_1 | exon | 69919275 | 69919765 | 69919275 | ID=Msa0568310-mRNA-1:exon:23510;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69920327 | 69920405 | 69920327 | ID=Msa0568310-mRNA-1:exon:23509;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69920825 | 69920843 | 69920825 | ID=Msa0568310-mRNA-1:exon:23508;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69920951 | 69921033 | 69920951 | ID=Msa0568310-mRNA-1:exon:23507;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69922799 | 69922886 | 69922799 | ID=Msa0568310-mRNA-1:exon:23506;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69923499 | 69923571 | 69923499 | ID=Msa0568310-mRNA-1:exon:23505;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69923665 | 69923719 | 69923665 | ID=Msa0568310-mRNA-1:exon:23504;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69923897 | 69923955 | 69923897 | ID=Msa0568310-mRNA-1:exon:23503;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69925000 | 69925199 | 69925000 | ID=Msa0568310-mRNA-1:exon:23502;Parent=Msa0568310-mRNA-1 |
| chr4_1 | exon | 69925352 | 69925470 | 69925352 | ID=Msa0568310-mRNA-1:exon:23501;Parent=Msa0568310-mRNA-1 |
| chr4_1 | five_prime_UTR | 69925352 | 69925470 | 69925352 | ID=Msa0568310-mRNA-1:five_prime_utr;Parent=Msa0568310-mRNA-1 |
| chr4_1 | five_prime_UTR | 69925172 | 69925199 | 69925172 | ID=Msa0568310-mRNA-1:five_prime_utr;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69925000 | 69925171 | 69925000 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69923897 | 69923955 | 69923897 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69923665 | 69923719 | 69923665 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69923499 | 69923571 | 69923499 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69922799 | 69922886 | 69922799 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69920951 | 69921033 | 69920951 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69920825 | 69920843 | 69920825 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69920327 | 69920405 | 69920327 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | CDS | 69919680 | 69919765 | 69919680 | ID=Msa0568310-mRNA-1:cds;Parent=Msa0568310-mRNA-1 |
| chr4_1 | three_prime_UTR | 69919275 | 69919679 | 69919275 | ID=Msa0568310-mRNA-1:three_prime_utr;Parent=Msa0568310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
