Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575060 | XP_003630983.1 | 95.205 | 292 | 11 | 1 | 1 | 292 | 1 | 289 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575060 | G7LBH2 | 95.205 | 292 | 11 | 1 | 1 | 292 | 1 | 289 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0575060 | Msa0575470 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0575060 | Msa0575690 | 0.823069 | 1.689092e-53 | -8.615850e-47 |
| Msa0575060 | Msa1374470 | 0.810680 | 1.022068e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575060 | MtrunA17_Chr8g0392061 | 95.205 | 292 | 11 | 1 | 1 | 292 | 1 | 289 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575060 | AT1G71080.1 | 54.355 | 287 | 107 | 7 | 1 | 283 | 1 | 267 | 9.55e-92 | 276 |
| Msa0575060 | AT5G38050.1 | 42.361 | 288 | 89 | 9 | 7 | 284 | 6 | 226 | 1.78e-57 | 187 |
Find 93 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCCTCAACTCCATTTA+TGG | 0.126297 | 4_1:+78839201 | None:intergenic |
| ACTAAACACATTCTATATAT+TGG | 0.224160 | 4_1:+78838758 | None:intergenic |
| ACCTCACCAGCTGCCATAAA+TGG | 0.254268 | 4_1:-78839214 | Msa0575060:CDS |
| CTCTCCCCTCTGCATTCACC+TGG | 0.289352 | 4_1:+78838978 | None:intergenic |
| AGAAGAATGTAGATTCTAAA+AGG | 0.297008 | 4_1:-78838724 | Msa0575060:three_prime_UTR |
| TTACCCTCAAATGTGACTTT+AGG | 0.304450 | 4_1:+78840991 | None:intergenic |
| AACAGAGACTCTATTCTCTT+TGG | 0.311741 | 4_1:+78841041 | None:intergenic |
| GGAACTGTTGCTGCCTCATC+TGG | 0.316472 | 4_1:-78840835 | Msa0575060:CDS |
| TGCCTCATCTGGACCGGGTT+TGG | 0.330284 | 4_1:-78840824 | Msa0575060:CDS |
| CCTGTAAAACCAGCCTCTTT+TGG | 0.357788 | 4_1:-78840775 | Msa0575060:CDS |
| TCTCAGAGCCTCAGCAGCAT+TGG | 0.359508 | 4_1:+78839003 | None:intergenic |
| CTCAGAGCCTCAGCAGCATT+GGG | 0.364535 | 4_1:+78839004 | None:intergenic |
| AAGAGTACAGTATTTGTTAG+AGG | 0.378243 | 4_1:+78841122 | None:intergenic |
| GTTAGATTGTACCATCTATC+AGG | 0.384853 | 4_1:+78841171 | None:intergenic |
| GCAAGAAGTTATTAATGATA+TGG | 0.388373 | 4_1:-78838660 | Msa0575060:three_prime_UTR |
| ACCTGAGGATGACAATGATA+TGG | 0.391142 | 4_1:-78839140 | Msa0575060:CDS |
| TAGAATGTGTTTAGTAAGCC+TGG | 0.408818 | 4_1:-78838750 | Msa0575060:three_prime_UTR |
| AGCAGTAGTGCTAGTGGTAG+TGG | 0.413902 | 4_1:-78838905 | Msa0575060:CDS |
| TCCATATCATTGTCATCCTC+AGG | 0.415518 | 4_1:+78839139 | None:intergenic |
| GAGTCTTCAGCTGCTGCCGC+TGG | 0.415827 | 4_1:-78840856 | Msa0575060:CDS |
| GAATGTAGATTCTAAAAGGT+TGG | 0.418193 | 4_1:-78838720 | Msa0575060:three_prime_UTR |
| AAGGGATAATGTTGAAGAAA+AGG | 0.424039 | 4_1:-78839113 | Msa0575060:CDS |
| GAATTTCACAACAATCAGAT+TGG | 0.430205 | 4_1:-78841018 | Msa0575060:CDS |
| GAAGTGGAGCGTATTGATAT+TGG | 0.432598 | 4_1:-78840131 | Msa0575060:CDS |
| TGACAATGATATGGAAGAAA+GGG | 0.437629 | 4_1:-78839131 | Msa0575060:CDS |
| GTTGAAGAAAAGGATAATGT+TGG | 0.444097 | 4_1:-78839103 | Msa0575060:CDS |
| TTGGTCTTGCGTAGTAATCC+AGG | 0.446614 | 4_1:+78841060 | None:intergenic |
| TCAACTCCATTTATGGCAGC+TGG | 0.450508 | 4_1:+78839208 | None:intergenic |
| TTCGATTGGAGCGTCTCGAC+AGG | 0.454027 | 4_1:-78840915 | Msa0575060:CDS |
| AATGTAGATTCTAAAAGGTT+GGG | 0.461427 | 4_1:-78838719 | Msa0575060:three_prime_UTR |
| TGTTGCTGCCTCATCTGGAC+CGG | 0.463989 | 4_1:-78840830 | Msa0575060:CDS |
| GTGAATGCAGAGGGGAGAGA+GGG | 0.464101 | 4_1:-78838974 | Msa0575060:CDS |
| GTCATAAACTCCGTCCATCC+AGG | 0.465138 | 4_1:-78841326 | Msa0575060:intron |
| CTGAGGCATCTTCGAAAGCC+TGG | 0.468947 | 4_1:-78840880 | Msa0575060:CDS |
| GATCCTCGCTCATCTCCCAT+TGG | 0.469494 | 4_1:-78840802 | Msa0575060:CDS |
| CTGCTCCTGAGCCTGATAGA+TGG | 0.471226 | 4_1:-78841182 | Msa0575060:CDS |
| ATGACAATGATATGGAAGAA+AGG | 0.472392 | 4_1:-78839132 | Msa0575060:CDS |
| ATGTCTTCAGCGAATGATGA+TGG | 0.475949 | 4_1:+78841413 | None:intergenic |
| ATCCTCGCTCATCTCCCATT+GGG | 0.480262 | 4_1:-78840801 | Msa0575060:CDS |
| TCTAGCAGTAGTAGTGGCAG+TGG | 0.481189 | 4_1:-78838929 | Msa0575060:CDS |
| TGATGGTCAGACACTTCGAT+TGG | 0.488630 | 4_1:-78840929 | Msa0575060:CDS |
| AGATGGTACAATCTAACCTT+AGG | 0.489835 | 4_1:-78841165 | Msa0575060:CDS |
| TTAGTCTTATCGACTGAAGC+AGG | 0.492973 | 4_1:+78841084 | None:intergenic |
| GCAGCAGCTGAAGACTCACC+AGG | 0.499684 | 4_1:+78840862 | None:intergenic |
| ATTGGTGAACCTGAAAATAC+TGG | 0.503387 | 4_1:-78840113 | Msa0575060:intron |
| TCCATTTATGGCAGCTGGTG+AGG | 0.508999 | 4_1:+78839213 | None:intergenic |
| AAACCTAAAGTCACATTTGA+GGG | 0.513120 | 4_1:-78840994 | Msa0575060:CDS |
| ATATAAAATTGCACAACTGT+GGG | 0.513975 | 4_1:-78838830 | Msa0575060:exon |
| TCAGTCGATAAGACTAAGCC+TGG | 0.517873 | 4_1:-78841078 | Msa0575060:CDS |
| GGTGAATGCAGAGGGGAGAG+AGG | 0.526077 | 4_1:-78838975 | Msa0575060:CDS |
| AATATAAAATTGCACAACTG+TGG | 0.529369 | 4_1:-78838831 | Msa0575060:exon |
| GCATCAAATTTGATTCTAAG+AGG | 0.532093 | 4_1:-78839276 | Msa0575060:CDS |
| ATCTTTGAAAGAAGATCCTA+AGG | 0.534513 | 4_1:+78841149 | None:intergenic |
| GCTCCTGCCACTACCAAAAG+AGG | 0.534680 | 4_1:+78840762 | None:intergenic |
| CAAAGGACCCAATGCTGCTG+AGG | 0.535918 | 4_1:-78839011 | Msa0575060:CDS |
| TGATTCTGCATAGGTTGAAG+TGG | 0.542193 | 4_1:-78840147 | Msa0575060:intron |
| TTGTACCATCTATCAGGCTC+AGG | 0.543882 | 4_1:+78841177 | None:intergenic |
| TGCTGAGGCTCTGAGAGCCC+AGG | 0.547103 | 4_1:-78838996 | Msa0575060:CDS |
| TCTCCCCTCTGCATTCACCT+GGG | 0.548515 | 4_1:+78838979 | None:intergenic |
| GTTGCTGCCTCATCTGGACC+GGG | 0.549583 | 4_1:-78840829 | Msa0575060:CDS |
| AAAACCTAAAGTCACATTTG+AGG | 0.551606 | 4_1:-78840995 | Msa0575060:CDS |
| GCAGTAGTGCTAGTGGTAGT+GGG | 0.553798 | 4_1:-78838904 | Msa0575060:CDS |
| TGAATGCAGAGGGGAGAGAG+GGG | 0.554259 | 4_1:-78838973 | Msa0575060:CDS |
| AGAGCCCAGGTGAATGCAGA+GGG | 0.556282 | 4_1:-78838983 | Msa0575060:CDS |
| AGAATGTGTTTAGTAAGCCT+GGG | 0.557446 | 4_1:-78838749 | Msa0575060:three_prime_UTR |
| ACGGCGGCGGAAGAGCAACT+TGG | 0.560776 | 4_1:+78841347 | None:intergenic |
| AGCAGCAGCAGTGACAGTGA+AGG | 0.569169 | 4_1:-78838878 | Msa0575060:CDS |
| ATTGCTGATGTGGATGATAG+TGG | 0.572395 | 4_1:-78839046 | Msa0575060:CDS |
| TGATGATGAGATTGCTGATG+TGG | 0.579571 | 4_1:-78839056 | Msa0575060:CDS |
| ATCCAAACCCGGTCCAGATG+AGG | 0.581573 | 4_1:+78840822 | None:intergenic |
| AATCTACATTCTTCTAACCC+AGG | 0.584766 | 4_1:+78838732 | None:intergenic |
| CTGCCACTACCAAAAGAGGC+TGG | 0.584867 | 4_1:+78840766 | None:intergenic |
| AGCTGCCATAAATGGAGTTG+AGG | 0.584912 | 4_1:-78839206 | Msa0575060:CDS |
| GGATGATAGTGGTGATGAGG+TGG | 0.599064 | 4_1:-78839035 | Msa0575060:CDS |
| TGAGGCAGCAACAGTTCCAG+CGG | 0.600536 | 4_1:+78840840 | None:intergenic |
| TCTACTTCTAGCAGTAGTAG+TGG | 0.605712 | 4_1:-78838935 | Msa0575060:CDS |
| AGTGGAAGCAGTAGTGCTAG+TGG | 0.607365 | 4_1:-78838911 | Msa0575060:CDS |
| GGCGGAAGAGCAACTTGGAG+TGG | 0.610793 | 4_1:+78841352 | None:intergenic |
| TCGATTGGAGCGTCTCGACA+GGG | 0.622968 | 4_1:-78840914 | Msa0575060:CDS |
| GACGGAGTTTATGACGGCGG+CGG | 0.624833 | 4_1:+78841334 | None:intergenic |
| CACATTTGAGGGTAATAGCG+AGG | 0.626625 | 4_1:-78840983 | Msa0575060:CDS |
| GAGAGCCCAGGTGAATGCAG+AGG | 0.636886 | 4_1:-78838984 | Msa0575060:CDS |
| GCAATCTCATCATCAGTGAG+TGG | 0.645355 | 4_1:+78839064 | None:intergenic |
| TGGATGGACGGAGTTTATGA+CGG | 0.646585 | 4_1:+78841328 | None:intergenic |
| TGTGGATGATAGTGGTGATG+AGG | 0.648138 | 4_1:-78839038 | Msa0575060:CDS |
| GATGAGCGAGGATCCAAACC+CGG | 0.651110 | 4_1:+78840811 | None:intergenic |
| GGTGAGGTAGCAGTAACAGT+GGG | 0.654678 | 4_1:+78839229 | None:intergenic |
| TTCCCAATGGGAGATGAGCG+AGG | 0.661975 | 4_1:+78840799 | None:intergenic |
| ACAGGGCTGTAAAGCAACTG+AGG | 0.680309 | 4_1:-78840897 | Msa0575060:CDS |
| TGGTGAGGTAGCAGTAACAG+TGG | 0.687583 | 4_1:+78839228 | None:intergenic |
| AGTGGTGATGAGGTGGACAA+AGG | 0.696247 | 4_1:-78839028 | Msa0575060:CDS |
| ATGGACGGAGTTTATGACGG+CGG | 0.740306 | 4_1:+78841331 | None:intergenic |
| GAGCCCAGGTGAATGCAGAG+GGG | 0.741897 | 4_1:-78838982 | Msa0575060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCCTTTATTAATTTT+AGG | - | chr4_1:78838770-78838789 | Msa0575060:three_prime_UTR | 10.0% |
| !!! | TAAGTGTTTAATTTTTTTAT+TGG | - | chr4_1:78839538-78839557 | Msa0575060:intron | 10.0% |
| !!! | AAGTGTTTAATTTTTTTATT+GGG | - | chr4_1:78839539-78839558 | Msa0575060:intron | 10.0% |
| !!! | GTTAATTTTATTTACTAAAA+AGG | + | chr4_1:78840366-78840385 | None:intergenic | 10.0% |
| !! | ACAAAACCTAAAATTAATAA+AGG | + | chr4_1:78838779-78838798 | None:intergenic | 15.0% |
| !!! | ATATTTTGGAAAAAAGAAAA+TGG | + | chr4_1:78840304-78840323 | None:intergenic | 15.0% |
| !! | TAAAATTAACACAAAGTAAA+CGG | - | chr4_1:78840376-78840395 | Msa0575060:intron | 15.0% |
| !!! | ATAGATATTAATGATCTTTT+TGG | - | chr4_1:78840844-78840863 | Msa0575060:CDS | 15.0% |
| !! | AAATTAAAAAAAAACCTGGA+TGG | + | chr4_1:78838707-78838726 | None:intergenic | 20.0% |
| !! | CAGAAAATTAAAAAAAAACC+TGG | + | chr4_1:78838711-78838730 | None:intergenic | 20.0% |
| !! | ATTACAAAATAACCGTATAA+AGG | + | chr4_1:78839389-78839408 | None:intergenic | 20.0% |
| !!! | AAAGATTTTCAGTGTTTTTA+TGG | - | chr4_1:78839415-78839434 | Msa0575060:intron | 20.0% |
| !! | GGATAAGTATATGATATAAA+CGG | + | chr4_1:78839481-78839500 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTTTATTGGG+AGG | - | chr4_1:78839542-78839561 | Msa0575060:intron | 20.0% |
| !!! | GTTTAATTTTTTTATTGGGA+GGG | - | chr4_1:78839543-78839562 | Msa0575060:intron | 20.0% |
| !!! | TTTAATTTTTTTATTGGGAG+GGG | - | chr4_1:78839544-78839563 | Msa0575060:intron | 20.0% |
| !!! | TTTTTTACGTTAAAAGAAAG+TGG | - | chr4_1:78839642-78839661 | Msa0575060:intron | 20.0% |
| !!! | TTTTTACGTTAAAAGAAAGT+GGG | - | chr4_1:78839643-78839662 | Msa0575060:intron | 20.0% |
| !!! | AAACAATTGTATGCATATTT+TGG | + | chr4_1:78840318-78840337 | None:intergenic | 20.0% |
| !! | AAAATTAACACAAAGTAAAC+GGG | - | chr4_1:78840377-78840396 | Msa0575060:intron | 20.0% |
| !!! | AGAAAATTACATAGACATTT+TGG | + | chr4_1:78840577-78840596 | None:intergenic | 20.0% |
| !! | ACTAAACACATTCTATATAT+TGG | + | chr4_1:78841261-78841280 | None:intergenic | 20.0% |
| ! | ACAACTATGCTAAAGATAAT+TGG | + | chr4_1:78839312-78839331 | None:intergenic | 25.0% |
| ! | ATCCTAAAAATGTATGATGT+TGG | - | chr4_1:78839356-78839375 | Msa0575060:intron | 25.0% |
| !! | GTTATAGAATGATTTGAAGT+TGG | - | chr4_1:78839665-78839684 | Msa0575060:intron | 25.0% |
| !!! | GTTGGTGATTTATATTTTTG+AGG | - | chr4_1:78839683-78839702 | Msa0575060:intron | 25.0% |
| !!! | GTGATTTATATTTTTGAGGT+TGG | - | chr4_1:78839687-78839706 | Msa0575060:intron | 25.0% |
| !! | ACTTACAAATCTCTTTTAGA+AGG | - | chr4_1:78839743-78839762 | Msa0575060:intron | 25.0% |
| ! | GAAAAGAGAAAAGAAAAACA+AGG | + | chr4_1:78839837-78839856 | None:intergenic | 25.0% |
| !!! | TTGTATGACTTTCTGTTTTT+CGG | - | chr4_1:78840046-78840065 | Msa0575060:intron | 25.0% |
| !! | AATGTTTTCACAAAGTAGAT+CGG | + | chr4_1:78840148-78840167 | None:intergenic | 25.0% |
| ! | AAATTAACACAAAGTAAACG+GGG | - | chr4_1:78840378-78840397 | Msa0575060:intron | 25.0% |
| ! | AAGATGAAAATGAAAAGCTT+AGG | + | chr4_1:78840404-78840423 | None:intergenic | 25.0% |
| !!! | AGACACATATGAATTTTTTC+TGG | - | chr4_1:78840601-78840620 | Msa0575060:intron | 25.0% |
| ! | AATATAAAATTGCACAACTG+TGG | - | chr4_1:78841185-78841204 | Msa0575060:CDS | 25.0% |
| ! | ATATAAAATTGCACAACTGT+GGG | - | chr4_1:78841186-78841205 | Msa0575060:CDS | 25.0% |
| ! | CAAAAACGATATATGGTAAA+AGG | + | chr4_1:78841227-78841246 | None:intergenic | 25.0% |
| ! | AGAAGAATGTAGATTCTAAA+AGG | - | chr4_1:78841292-78841311 | Msa0575060:intron | 25.0% |
| !! | AATGTAGATTCTAAAAGGTT+GGG | - | chr4_1:78841297-78841316 | Msa0575060:intron | 25.0% |
| ! | GCAAGAAGTTATTAATGATA+TGG | - | chr4_1:78841356-78841375 | Msa0575060:five_prime_UTR | 25.0% |
| TAAAAAAAAACCTGGATGGA+CGG | + | chr4_1:78838703-78838722 | None:intergenic | 30.0% | |
| !!! | AATTTTAGGTTTTGTGCTGA+TGG | - | chr4_1:78838784-78838803 | Msa0575060:three_prime_UTR | 30.0% |
| ! | ATCTTTGAAAGAAGATCCTA+AGG | + | chr4_1:78838870-78838889 | None:intergenic | 30.0% |
| ! | AAGAGTACAGTATTTGTTAG+AGG | + | chr4_1:78838897-78838916 | None:intergenic | 30.0% |
| GAATTTCACAACAATCAGAT+TGG | - | chr4_1:78838998-78839017 | Msa0575060:CDS | 30.0% | |
| AAAACCTAAAGTCACATTTG+AGG | - | chr4_1:78839021-78839040 | Msa0575060:CDS | 30.0% | |
| AAACCTAAAGTCACATTTGA+GGG | - | chr4_1:78839022-78839041 | Msa0575060:CDS | 30.0% | |
| ! | CTCCAACATCATACATTTTT+AGG | + | chr4_1:78839361-78839380 | None:intergenic | 30.0% |
| ATAGATACATGCATTTCACT+AGG | - | chr4_1:78839601-78839620 | Msa0575060:intron | 30.0% | |
| !!! | GGTTTTGATTTTGTGTGTTT+TGG | - | chr4_1:78839764-78839783 | Msa0575060:intron | 30.0% |
| !! | CATTTACATTGATTCTGCAT+AGG | - | chr4_1:78839860-78839879 | Msa0575060:intron | 30.0% |
| ACGAGAAAATCAATTAAGCA+AGG | + | chr4_1:78839988-78840007 | None:intergenic | 30.0% | |
| ! | AAAAAAGACATGTGTTGCTA+GGG | + | chr4_1:78840028-78840047 | None:intergenic | 30.0% |
| ! | ATGTTTTCACAAAGTAGATC+GGG | + | chr4_1:78840147-78840166 | None:intergenic | 30.0% |
| TCATCTTCTCTTCATCAAAA+TGG | + | chr4_1:78840244-78840263 | None:intergenic | 30.0% | |
| GCATCAAATTTGATTCTAAG+AGG | - | chr4_1:78840740-78840759 | Msa0575060:intron | 30.0% | |
| !! | ATTAATGATCTTTTTGGCAG+TGG | - | chr4_1:78840850-78840869 | Msa0575060:CDS | 30.0% |
| ATGACAATGATATGGAAGAA+AGG | - | chr4_1:78840884-78840903 | Msa0575060:CDS | 30.0% | |
| TGACAATGATATGGAAGAAA+GGG | - | chr4_1:78840885-78840904 | Msa0575060:CDS | 30.0% | |
| AAGGGATAATGTTGAAGAAA+AGG | - | chr4_1:78840903-78840922 | Msa0575060:CDS | 30.0% | |
| GTTGAAGAAAAGGATAATGT+TGG | - | chr4_1:78840913-78840932 | Msa0575060:CDS | 30.0% | |
| TTTGCAGCAAAAACGATATA+TGG | + | chr4_1:78841234-78841253 | None:intergenic | 30.0% | |
| ! | GAATGTAGATTCTAAAAGGT+TGG | - | chr4_1:78841296-78841315 | Msa0575060:intron | 30.0% |
| GTTAGATTGTACCATCTATC+AGG | + | chr4_1:78838848-78838867 | None:intergenic | 35.0% | |
| AGATGGTACAATCTAACCTT+AGG | - | chr4_1:78838851-78838870 | Msa0575060:CDS | 35.0% | |
| AACAGAGACTCTATTCTCTT+TGG | + | chr4_1:78838978-78838997 | None:intergenic | 35.0% | |
| TTACCCTCAAATGTGACTTT+AGG | + | chr4_1:78839028-78839047 | None:intergenic | 35.0% | |
| !!! | GATGCTGTTTTGTTCTTTGA+TGG | - | chr4_1:78839070-78839089 | Msa0575060:CDS | 35.0% |
| TGCTAAAGATAATTGGCAGT+AGG | + | chr4_1:78839305-78839324 | None:intergenic | 35.0% | |
| GTTGGAGACTATCCTTTATA+CGG | - | chr4_1:78839374-78839393 | Msa0575060:intron | 35.0% | |
| ! | AGTTGATACTTTACTGAACC+TGG | - | chr4_1:78839439-78839458 | Msa0575060:intron | 35.0% |
| GATGTTATAGCAGTATGACA+AGG | + | chr4_1:78839502-78839521 | None:intergenic | 35.0% | |
| !!! | TTTTTGAGGTTGGTGTATGT+TGG | - | chr4_1:78839697-78839716 | Msa0575060:intron | 35.0% |
| !!! | TTTTGAGGTTGGTGTATGTT+GGG | - | chr4_1:78839698-78839717 | Msa0575060:intron | 35.0% |
| ATTGGTGAACCTGAAAATAC+TGG | - | chr4_1:78839903-78839922 | Msa0575060:intron | 35.0% | |
| ! | TCAGACATACCAGTATTTTC+AGG | + | chr4_1:78839915-78839934 | None:intergenic | 35.0% |
| AAATACTGGTATGTCTGATC+TGG | - | chr4_1:78839917-78839936 | Msa0575060:intron | 35.0% | |
| ! | CAAAAAAGACATGTGTTGCT+AGG | + | chr4_1:78840029-78840048 | None:intergenic | 35.0% |
| ATGTACCTGATTGAAGGAAA+AGG | + | chr4_1:78840108-78840127 | None:intergenic | 35.0% | |
| ! | TTTTCCTTCAATCAGGTACA+TGG | - | chr4_1:78840107-78840126 | Msa0575060:intron | 35.0% |
| TTACTAAAAAGGGAGATGAG+AGG | + | chr4_1:78840355-78840374 | None:intergenic | 35.0% | |
| !! | CATTTTGGAAAAAGCAGCAA+AGG | + | chr4_1:78840562-78840581 | None:intergenic | 35.0% |
| TAACGTTGTTGATGTATGAC+AGG | - | chr4_1:78840718-78840737 | Msa0575060:intron | 35.0% | |
| ATGTTCCTCAACTCCATTTA+TGG | + | chr4_1:78840818-78840837 | None:intergenic | 35.0% | |
| TAGAATGTGTTTAGTAAGCC+TGG | - | chr4_1:78841266-78841285 | Msa0575060:intron | 35.0% | |
| AGAATGTGTTTAGTAAGCCT+GGG | - | chr4_1:78841267-78841286 | Msa0575060:intron | 35.0% | |
| AATCTACATTCTTCTAACCC+AGG | + | chr4_1:78841287-78841306 | None:intergenic | 35.0% | |
| ATGTCTTCAGCGAATGATGA+TGG | + | chr4_1:78838606-78838625 | None:intergenic | 40.0% | |
| !! | TTAGTCTTATCGACTGAAGC+AGG | + | chr4_1:78838935-78838954 | None:intergenic | 40.0% |
| ! | AGCTGTTACTTCTATGGTGA+TGG | - | chr4_1:78839790-78839809 | Msa0575060:intron | 40.0% |
| ! | TGATTCTGCATAGGTTGAAG+TGG | - | chr4_1:78839869-78839888 | Msa0575060:intron | 40.0% |
| ! | GAAGTGGAGCGTATTGATAT+TGG | - | chr4_1:78839885-78839904 | Msa0575060:intron | 40.0% |
| GTATGTCTGATCTGGTTAGA+AGG | - | chr4_1:78839925-78839944 | Msa0575060:intron | 40.0% | |
| ! | TGCAACCTTTTCCTTCAATC+AGG | - | chr4_1:78840100-78840119 | Msa0575060:intron | 40.0% |
| ACCTGAGGATGACAATGATA+TGG | - | chr4_1:78840876-78840895 | Msa0575060:CDS | 40.0% | |
| TCCATATCATTGTCATCCTC+AGG | + | chr4_1:78840880-78840899 | None:intergenic | 40.0% | |
| ! | TGATGATGAGATTGCTGATG+TGG | - | chr4_1:78840960-78840979 | Msa0575060:CDS | 40.0% |
| ATTGCTGATGTGGATGATAG+TGG | - | chr4_1:78840970-78840989 | Msa0575060:CDS | 40.0% | |
| TCTACTTCTAGCAGTAGTAG+TGG | - | chr4_1:78841081-78841100 | Msa0575060:CDS | 40.0% | |
| TGGATGGACGGAGTTTATGA+CGG | + | chr4_1:78838691-78838710 | None:intergenic | 45.0% | |
| TTGTACCATCTATCAGGCTC+AGG | + | chr4_1:78838842-78838861 | None:intergenic | 45.0% | |
| TCAGTCGATAAGACTAAGCC+TGG | - | chr4_1:78838938-78838957 | Msa0575060:CDS | 45.0% | |
| !! | TTGGTCTTGCGTAGTAATCC+AGG | + | chr4_1:78838959-78838978 | None:intergenic | 45.0% |
| CACATTTGAGGGTAATAGCG+AGG | - | chr4_1:78839033-78839052 | Msa0575060:CDS | 45.0% | |
| TGATGGTCAGACACTTCGAT+TGG | - | chr4_1:78839087-78839106 | Msa0575060:CDS | 45.0% | |
| ! | GGTTTTACAGGCTTCCCAAT+GGG | + | chr4_1:78839232-78839251 | None:intergenic | 45.0% |
| !! | TGGTTTTACAGGCTTCCCAA+TGG | + | chr4_1:78839233-78839252 | None:intergenic | 45.0% |
| !!! | CCAAAAGAGGCTGGTTTTAC+AGG | + | chr4_1:78839244-78839263 | None:intergenic | 45.0% |
| ! | CCTGTAAAACCAGCCTCTTT+TGG | - | chr4_1:78839241-78839260 | Msa0575060:CDS | 45.0% |
| ! | AAACCAGCCTCTTTTGGTAG+TGG | - | chr4_1:78839247-78839266 | Msa0575060:CDS | 45.0% |
| AATTGGCAGTAGGCACTTAC+TGG | + | chr4_1:78839295-78839314 | None:intergenic | 45.0% | |
| ! | TGGCTGAGCTGTTACTTCTA+TGG | - | chr4_1:78839784-78839803 | Msa0575060:intron | 45.0% |
| GAAGGAAAAGGTTGCACAGT+GGG | + | chr4_1:78840096-78840115 | None:intergenic | 45.0% | |
| TGAAGGAAAAGGTTGCACAG+TGG | + | chr4_1:78840097-78840116 | None:intergenic | 45.0% | |
| TCCTTCAATCAGGTACATGG+AGG | - | chr4_1:78840110-78840129 | Msa0575060:intron | 45.0% | |
| TCCTCCATGTACCTGATTGA+AGG | + | chr4_1:78840114-78840133 | None:intergenic | 45.0% | |
| GAGCACGAAAACTGTCATGT+TGG | + | chr4_1:78840540-78840559 | None:intergenic | 45.0% | |
| TCAACTCCATTTATGGCAGC+TGG | + | chr4_1:78840811-78840830 | None:intergenic | 45.0% | |
| AGCTGCCATAAATGGAGTTG+AGG | - | chr4_1:78840810-78840829 | Msa0575060:CDS | 45.0% | |
| GCAATCTCATCATCAGTGAG+TGG | + | chr4_1:78840955-78840974 | None:intergenic | 45.0% | |
| !! | TGTGGATGATAGTGGTGATG+AGG | - | chr4_1:78840978-78840997 | Msa0575060:CDS | 45.0% |
| !!! | TTAATTTTATTTACTAAAAA+GGG | + | chr4_1:78840365-78840384 | None:intergenic | 5.0% |
| ATGGACGGAGTTTATGACGG+CGG | + | chr4_1:78838688-78838707 | None:intergenic | 50.0% | |
| GTCATAAACTCCGTCCATCC+AGG | - | chr4_1:78838690-78838709 | Msa0575060:three_prime_UTR | 50.0% | |
| ! | TCAGGCTCAGGAGCAGTTTT+CGG | + | chr4_1:78838830-78838849 | None:intergenic | 50.0% |
| ACAGGGCTGTAAAGCAACTG+AGG | - | chr4_1:78839119-78839138 | Msa0575060:CDS | 50.0% | |
| ATCCTCGCTCATCTCCCATT+GGG | - | chr4_1:78839215-78839234 | Msa0575060:CDS | 50.0% | |
| GGACAAGCTATGTGTGTACC+AGG | + | chr4_1:78839460-78839479 | None:intergenic | 50.0% | |
| AAAGGGAGATGAGAGGCTCT+TGG | + | chr4_1:78840348-78840367 | None:intergenic | 50.0% | |
| GGTGAGGTAGCAGTAACAGT+GGG | + | chr4_1:78840790-78840809 | None:intergenic | 50.0% | |
| TGGTGAGGTAGCAGTAACAG+TGG | + | chr4_1:78840791-78840810 | None:intergenic | 50.0% | |
| ACCTCACCAGCTGCCATAAA+TGG | - | chr4_1:78840802-78840821 | Msa0575060:CDS | 50.0% | |
| TCCATTTATGGCAGCTGGTG+AGG | + | chr4_1:78840806-78840825 | None:intergenic | 50.0% | |
| ! | TTTTGGCAGTGGAACACCTG+AGG | - | chr4_1:78840861-78840880 | Msa0575060:CDS | 50.0% |
| !! | GGATGATAGTGGTGATGAGG+TGG | - | chr4_1:78840981-78841000 | Msa0575060:CDS | 50.0% |
| ! | AGTGGTGATGAGGTGGACAA+AGG | - | chr4_1:78840988-78841007 | Msa0575060:CDS | 50.0% |
| TCTAGCAGTAGTAGTGGCAG+TGG | - | chr4_1:78841087-78841106 | Msa0575060:CDS | 50.0% | |
| AGTGGAAGCAGTAGTGCTAG+TGG | - | chr4_1:78841105-78841124 | Msa0575060:CDS | 50.0% | |
| AGCAGTAGTGCTAGTGGTAG+TGG | - | chr4_1:78841111-78841130 | Msa0575060:CDS | 50.0% | |
| GCAGTAGTGCTAGTGGTAGT+GGG | - | chr4_1:78841112-78841131 | Msa0575060:CDS | 50.0% | |
| CTGCTCCTGAGCCTGATAGA+TGG | - | chr4_1:78838834-78838853 | Msa0575060:exon | 55.0% | |
| ! | TTCGATTGGAGCGTCTCGAC+AGG | - | chr4_1:78839101-78839120 | Msa0575060:CDS | 55.0% |
| ! | TCGATTGGAGCGTCTCGACA+GGG | - | chr4_1:78839102-78839121 | Msa0575060:CDS | 55.0% |
| ! | CTGAGGCATCTTCGAAAGCC+TGG | - | chr4_1:78839136-78839155 | Msa0575060:CDS | 55.0% |
| TGAGGCAGCAACAGTTCCAG+CGG | + | chr4_1:78839179-78839198 | None:intergenic | 55.0% | |
| GGAACTGTTGCTGCCTCATC+TGG | - | chr4_1:78839181-78839200 | Msa0575060:CDS | 55.0% | |
| TGTTGCTGCCTCATCTGGAC+CGG | - | chr4_1:78839186-78839205 | Msa0575060:CDS | 55.0% | |
| ATCCAAACCCGGTCCAGATG+AGG | + | chr4_1:78839197-78839216 | None:intergenic | 55.0% | |
| GATGAGCGAGGATCCAAACC+CGG | + | chr4_1:78839208-78839227 | None:intergenic | 55.0% | |
| GATCCTCGCTCATCTCCCAT+TGG | - | chr4_1:78839214-78839233 | Msa0575060:CDS | 55.0% | |
| TTCCCAATGGGAGATGAGCG+AGG | + | chr4_1:78839220-78839239 | None:intergenic | 55.0% | |
| CTGCCACTACCAAAAGAGGC+TGG | + | chr4_1:78839253-78839272 | None:intergenic | 55.0% | |
| !!! | CAGCCTCTTTTGGTAGTGGC+AGG | - | chr4_1:78839251-78839270 | Msa0575060:CDS | 55.0% |
| GCTCCTGCCACTACCAAAAG+AGG | + | chr4_1:78839257-78839276 | None:intergenic | 55.0% | |
| CAAAGGACCCAATGCTGCTG+AGG | - | chr4_1:78841005-78841024 | Msa0575060:CDS | 55.0% | |
| CTCAGAGCCTCAGCAGCATT+GGG | + | chr4_1:78841015-78841034 | None:intergenic | 55.0% | |
| TCTCAGAGCCTCAGCAGCAT+TGG | + | chr4_1:78841016-78841035 | None:intergenic | 55.0% | |
| AGAGCCCAGGTGAATGCAGA+GGG | - | chr4_1:78841033-78841052 | Msa0575060:CDS | 55.0% | |
| TCTCCCCTCTGCATTCACCT+GGG | + | chr4_1:78841040-78841059 | None:intergenic | 55.0% | |
| GTGAATGCAGAGGGGAGAGA+GGG | - | chr4_1:78841042-78841061 | Msa0575060:CDS | 55.0% | |
| TGAATGCAGAGGGGAGAGAG+GGG | - | chr4_1:78841043-78841062 | Msa0575060:CDS | 55.0% | |
| AGCAGCAGCAGTGACAGTGA+AGG | - | chr4_1:78841138-78841157 | Msa0575060:CDS | 55.0% | |
| GGCGGAAGAGCAACTTGGAG+TGG | + | chr4_1:78838667-78838686 | None:intergenic | 60.0% | |
| GACGGAGTTTATGACGGCGG+CGG | + | chr4_1:78838685-78838704 | None:intergenic | 60.0% | |
| GCAGCAGCTGAAGACTCACC+AGG | + | chr4_1:78839157-78839176 | None:intergenic | 60.0% | |
| GTTGCTGCCTCATCTGGACC+GGG | - | chr4_1:78839187-78839206 | Msa0575060:CDS | 60.0% | |
| TGCCTCATCTGGACCGGGTT+TGG | - | chr4_1:78839192-78839211 | Msa0575060:CDS | 60.0% | |
| GAGAGCCCAGGTGAATGCAG+AGG | - | chr4_1:78841032-78841051 | Msa0575060:CDS | 60.0% | |
| GAGCCCAGGTGAATGCAGAG+GGG | - | chr4_1:78841034-78841053 | Msa0575060:CDS | 60.0% | |
| CTCTCCCCTCTGCATTCACC+TGG | + | chr4_1:78841041-78841060 | None:intergenic | 60.0% | |
| GGTGAATGCAGAGGGGAGAG+AGG | - | chr4_1:78841041-78841060 | Msa0575060:CDS | 60.0% | |
| ACGGCGGCGGAAGAGCAACT+TGG | + | chr4_1:78838672-78838691 | None:intergenic | 65.0% | |
| GAGTCTTCAGCTGCTGCCGC+TGG | - | chr4_1:78839160-78839179 | Msa0575060:CDS | 65.0% | |
| !! | TGCTGAGGCTCTGAGAGCCC+AGG | - | chr4_1:78841020-78841039 | Msa0575060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78838594 | 78841444 | 78838594 | ID=Msa0575060;Name=Msa0575060 |
| chr4_1 | mRNA | 78838594 | 78841444 | 78838594 | ID=Msa0575060-mRNA-1;Parent=Msa0575060;Name=Msa0575060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=129|1|1|1|0.66|0.5|4|253|328 |
| chr4_1 | exon | 78838594 | 78839298 | 78838594 | ID=Msa0575060-mRNA-1:exon:28017;Parent=Msa0575060-mRNA-1 |
| chr4_1 | exon | 78840114 | 78840156 | 78840114 | ID=Msa0575060-mRNA-1:exon:28016;Parent=Msa0575060-mRNA-1 |
| chr4_1 | exon | 78840744 | 78841246 | 78840744 | ID=Msa0575060-mRNA-1:exon:28015;Parent=Msa0575060-mRNA-1 |
| chr4_1 | exon | 78841327 | 78841444 | 78841327 | ID=Msa0575060-mRNA-1:exon:28014;Parent=Msa0575060-mRNA-1 |
| chr4_1 | five_prime_UTR | 78841327 | 78841444 | 78841327 | ID=Msa0575060-mRNA-1:five_prime_utr;Parent=Msa0575060-mRNA-1 |
| chr4_1 | five_prime_UTR | 78841236 | 78841246 | 78841236 | ID=Msa0575060-mRNA-1:five_prime_utr;Parent=Msa0575060-mRNA-1 |
| chr4_1 | CDS | 78840744 | 78841235 | 78840744 | ID=Msa0575060-mRNA-1:cds;Parent=Msa0575060-mRNA-1 |
| chr4_1 | CDS | 78840114 | 78840156 | 78840114 | ID=Msa0575060-mRNA-1:cds;Parent=Msa0575060-mRNA-1 |
| chr4_1 | CDS | 78838847 | 78839298 | 78838847 | ID=Msa0575060-mRNA-1:cds;Parent=Msa0575060-mRNA-1 |
| chr4_1 | three_prime_UTR | 78838594 | 78838846 | 78838594 | ID=Msa0575060-mRNA-1:three_prime_utr;Parent=Msa0575060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
