Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575420 | AET05530.1 | 95.264 | 549 | 7 | 1 | 1 | 549 | 1 | 530 | 0.0 | 1075 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575420 | sp|Q10I20|XAT3_ORYSJ | 45.758 | 389 | 194 | 9 | 166 | 548 | 198 | 575 | 3.84e-116 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575420 | G7LCG2 | 95.264 | 549 | 7 | 1 | 1 | 549 | 1 | 530 | 0.0 | 1075 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0575420 | Msa0930180 | 0.886106 | 4.563816e-72 | -8.615850e-47 |
| Msa0575420 | Msa1372520 | 0.872091 | 4.150557e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575420 | MtrunA17_Chr8g0392591 | 94.718 | 549 | 6 | 2 | 1 | 549 | 1 | 526 | 0.0 | 1065 |
| Msa0575420 | MtrunA17_Chr5g0398231 | 83.761 | 351 | 15 | 3 | 155 | 503 | 12 | 322 | 0.0 | 589 |
| Msa0575420 | MtrunA17_Chr7g0257291 | 34.895 | 427 | 220 | 8 | 171 | 545 | 106 | 526 | 3.41e-80 | 261 |
| Msa0575420 | MtrunA17_Chr5g0418331 | 36.919 | 344 | 197 | 11 | 211 | 545 | 31 | 363 | 4.20e-68 | 224 |
| Msa0575420 | MtrunA17_Chr5g0418341 | 36.127 | 346 | 198 | 11 | 211 | 545 | 65 | 398 | 9.63e-67 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575420 | AT3G18170.2 | 44.268 | 567 | 259 | 12 | 1 | 547 | 6 | 535 | 2.80e-161 | 470 |
| Msa0575420 | AT3G18170.1 | 51.026 | 390 | 176 | 5 | 166 | 547 | 2 | 384 | 1.11e-141 | 414 |
| Msa0575420 | AT3G18180.1 | 48.905 | 411 | 192 | 8 | 141 | 548 | 71 | 466 | 1.81e-138 | 409 |
| Msa0575420 | AT3G10320.1 | 36.623 | 385 | 225 | 7 | 174 | 543 | 108 | 488 | 3.13e-82 | 265 |
| Msa0575420 | AT2G41640.3 | 36.364 | 385 | 226 | 9 | 174 | 546 | 14 | 391 | 4.31e-82 | 262 |
| Msa0575420 | AT2G41640.1 | 36.364 | 385 | 226 | 9 | 174 | 546 | 107 | 484 | 2.06e-80 | 261 |
| Msa0575420 | AT2G41640.2 | 36.772 | 378 | 220 | 9 | 174 | 539 | 107 | 477 | 1.61e-79 | 258 |
| Msa0575420 | AT3G57380.1 | 35.806 | 391 | 228 | 8 | 173 | 546 | 102 | 486 | 6.42e-79 | 257 |
| Msa0575420 | AT3G57380.2 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 3.32e-78 | 252 |
| Msa0575420 | AT3G57380.3 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 3.32e-78 | 252 |
| Msa0575420 | AT2G03370.2 | 31.296 | 409 | 241 | 16 | 158 | 543 | 51 | 442 | 2.28e-60 | 206 |
| Msa0575420 | AT2G03370.1 | 31.296 | 409 | 241 | 16 | 158 | 543 | 49 | 440 | 2.49e-60 | 206 |
| Msa0575420 | AT2G03360.2 | 30.807 | 409 | 249 | 14 | 155 | 543 | 49 | 443 | 2.11e-59 | 204 |
| Msa0575420 | AT2G03360.1 | 30.807 | 409 | 249 | 14 | 155 | 543 | 45 | 439 | 2.63e-59 | 204 |
Find 95 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTGTAGACAATTTAA+TGG | 0.234810 | 4_1:-79304786 | Msa0575420:CDS |
| TGCTGGAATGCTGTGATATT+TGG | 0.250735 | 4_1:+79304881 | None:intergenic |
| TTCATCCAAGTTGTGCCTTT+TGG | 0.253333 | 4_1:-79304258 | Msa0575420:CDS |
| ATGATCTTACCTTCGGCTTT+TGG | 0.269229 | 4_1:+79305379 | None:intergenic |
| CCTATTCTATCAAAGACTTC+AGG | 0.290299 | 4_1:-79304575 | Msa0575420:CDS |
| AGGTGATCATTGGCCTTAAA+AGG | 0.292223 | 4_1:-79304635 | Msa0575420:CDS |
| ATGTAAGGCTTGATGTTAAT+AGG | 0.294844 | 4_1:-79304029 | Msa0575420:CDS |
| GCAATCAAAATTAGAGATAT+TGG | 0.305071 | 4_1:-79304513 | Msa0575420:CDS |
| GTGGCATTGACAGGGTTCTT+TGG | 0.305873 | 4_1:+79305682 | None:intergenic |
| GTGGCATTGACAGGGTTCTT+TGG | 0.305873 | 4_1:+79305739 | None:intergenic |
| AATACTTGGAATATAAAATA+AGG | 0.316625 | 4_1:-79304170 | Msa0575420:CDS |
| TTTATAATCATATTGTCTAA+TGG | 0.326079 | 4_1:+79304117 | None:intergenic |
| GTCATTGACCATCAACAATT+TGG | 0.335573 | 4_1:+79306329 | None:intergenic |
| AAAACGTGTCATGGATTATA+AGG | 0.339004 | 4_1:-79304998 | Msa0575420:CDS |
| TTTAAGAAATGCTTGGTGTT+TGG | 0.347169 | 4_1:+79304719 | None:intergenic |
| CTTGAGTTATTGCATCAATA+AGG | 0.348987 | 4_1:-79303982 | None:intergenic |
| TTGCACATTTAAACCTTACT+TGG | 0.349676 | 4_1:-79306617 | Msa0575420:CDS |
| CTCATAACGACTAAAGCTTT+TGG | 0.352882 | 4_1:+79306696 | None:intergenic |
| AACAAGGATGGGAAGCCTTT+AGG | 0.356870 | 4_1:-79304074 | Msa0575420:CDS |
| TTAAGGCCAATGATCACCTT+AGG | 0.372315 | 4_1:+79304639 | None:intergenic |
| AAACTCTTGTGATGTACTAA+TGG | 0.373358 | 4_1:-79304334 | Msa0575420:CDS |
| CCCGGATATCTCCTTGGGTT+TGG | 0.380512 | 4_1:+79305078 | None:intergenic |
| ATTAGACAATATGATTATAA+AGG | 0.393436 | 4_1:-79304115 | Msa0575420:CDS |
| TTATTACCTTTAGCCATTTG+TGG | 0.398154 | 4_1:+79305649 | None:intergenic |
| GATATTCTTGTGGCATTGAC+AGG | 0.402195 | 4_1:+79305730 | None:intergenic |
| GAGATTCTTGTGGCATTGAC+AGG | 0.403672 | 4_1:+79305673 | None:intergenic |
| CATGCACCCGGATATCTCCT+TGG | 0.403742 | 4_1:+79305072 | None:intergenic |
| TGTCACTGAATTCATGGAAA+TGG | 0.404556 | 4_1:+79304826 | None:intergenic |
| AGAGTAATTGTTATGGAAGC+AGG | 0.405546 | 4_1:-79304387 | Msa0575420:CDS |
| TGACAATGTCACTGAATTCA+TGG | 0.407771 | 4_1:+79304820 | None:intergenic |
| ATGCACCCGGATATCTCCTT+GGG | 0.421105 | 4_1:+79305073 | None:intergenic |
| CTATTCTATCAAAGACTTCA+GGG | 0.422298 | 4_1:-79304574 | Msa0575420:CDS |
| GCATCACTCTTTCGAGCATA+AGG | 0.424381 | 4_1:+79304975 | None:intergenic |
| CGTTGACACCAAATTGTTGA+TGG | 0.427312 | 4_1:-79306337 | Msa0575420:CDS |
| ATGTACTCACAATCATATAT+AGG | 0.428118 | 4_1:+79306592 | None:intergenic |
| TGCTTCCCTAAGGTGATCAT+TGG | 0.434274 | 4_1:-79304645 | Msa0575420:CDS |
| CCTGAAGTCTTTGATAGAAT+AGG | 0.436083 | 4_1:+79304575 | None:intergenic |
| GTCAAAATACACTGACCTAA+AGG | 0.444673 | 4_1:+79304059 | None:intergenic |
| GCCAAACCCAAGGAGATATC+CGG | 0.449399 | 4_1:-79305079 | Msa0575420:CDS |
| GTGAACATCAAGCTCTCAAT+TGG | 0.449684 | 4_1:-79306360 | Msa0575420:CDS |
| CAATGAGTAGTGTAACAAAA+TGG | 0.461073 | 4_1:-79304947 | Msa0575420:CDS |
| GGGTTTCAGAGTAATTGTTA+TGG | 0.461461 | 4_1:-79304394 | Msa0575420:CDS |
| TGGTGCACTGTGAGACTTGG+TGG | 0.463102 | 4_1:+79304901 | None:intergenic |
| CACTGTGAGACTTGGTGGCT+AGG | 0.470879 | 4_1:+79304906 | None:intergenic |
| CTTGGAATATAAAATAAGGT+TGG | 0.474476 | 4_1:-79304166 | Msa0575420:CDS |
| CACAAGAATCTCTCCACAAA+TGG | 0.484320 | 4_1:-79305662 | Msa0575420:CDS |
| GGATATGAACATAAAATACT+TGG | 0.485648 | 4_1:-79304184 | Msa0575420:CDS |
| CTGGAGAGAATCAGGAGCCT+AGG | 0.487042 | 4_1:+79304474 | None:intergenic |
| TCCACTTGCATTCCACCAAA+AGG | 0.487171 | 4_1:+79304243 | None:intergenic |
| TTCTCTACTGCAGGATACAC+TGG | 0.490671 | 4_1:-79304852 | Msa0575420:CDS |
| ATCTCTCCACAAATGGCTAA+AGG | 0.495003 | 4_1:-79305655 | Msa0575420:intron |
| GCAGTAGAGAATATTACTGC+TGG | 0.498916 | 4_1:+79304864 | None:intergenic |
| TAAGGCCAATGATCACCTTA+GGG | 0.500135 | 4_1:+79304640 | None:intergenic |
| TTCCACCAAAAGGCACAACT+TGG | 0.501284 | 4_1:+79304253 | None:intergenic |
| GATGTACTAATGGGAGTTCA+TGG | 0.502973 | 4_1:-79304324 | Msa0575420:CDS |
| AACTCTTGTGATGTACTAAT+GGG | 0.504329 | 4_1:-79304333 | Msa0575420:CDS |
| GGGCCTTGCAAAATCATTTG+TGG | 0.505794 | 4_1:+79304212 | None:intergenic |
| AGTTCTCTACATATTATTGA+AGG | 0.511289 | 4_1:-79305854 | Msa0575420:intron |
| TCAAGGGCTTTCTGTAATGT+TGG | 0.512220 | 4_1:+79304000 | None:intergenic |
| GTAATCAAAGTAAGAAGCCT+AGG | 0.519633 | 4_1:-79304491 | Msa0575420:CDS |
| CTGGGATATGGAGCATTCGT+TGG | 0.522124 | 4_1:-79306664 | Msa0575420:CDS |
| GCAGTAATATTCTCTACTGC+AGG | 0.528045 | 4_1:-79304861 | Msa0575420:CDS |
| CTTATTGATGCAATAACTCA+AGG | 0.528098 | 4_1:+79303983 | None:intergenic |
| TCATAACTGATAAGAAGTCT+TGG | 0.529455 | 4_1:-79304749 | Msa0575420:CDS |
| ATTTGGTGCACTGTGAGACT+TGG | 0.529586 | 4_1:+79304898 | None:intergenic |
| TTTATGTTCATATCCTCTGA+GGG | 0.533023 | 4_1:+79304192 | None:intergenic |
| TTTGTGTGACACAATGTAAA+CGG | 0.540817 | 4_1:+79305037 | None:intergenic |
| GCCTGGCTGAAAACGTGTCA+TGG | 0.547588 | 4_1:-79305007 | Msa0575420:CDS |
| CAAGGAGATATCCGGGTGCA+TGG | 0.548034 | 4_1:-79305071 | Msa0575420:CDS |
| TGCACATTTAAACCTTACTT+GGG | 0.549478 | 4_1:-79306616 | Msa0575420:CDS |
| CTAATGGGAGTTCATGGTGC+AGG | 0.551094 | 4_1:-79304318 | Msa0575420:CDS |
| TCATATATAGGACCCAAGTA+AGG | 0.567103 | 4_1:+79306604 | None:intergenic |
| CCAAACCCAAGGAGATATCC+GGG | 0.575035 | 4_1:-79305078 | Msa0575420:CDS |
| GAGTAATTGTTATGGAAGCA+GGG | 0.577494 | 4_1:-79304386 | Msa0575420:CDS |
| ATAGAATAGGAATACTTCTG+TGG | 0.579492 | 4_1:+79304588 | None:intergenic |
| TATTTGATTTGTATTAGTGA+AGG | 0.583692 | 4_1:+79304437 | None:intergenic |
| TTGGTGGAATGCAAGTGGAA+TGG | 0.588217 | 4_1:-79304239 | Msa0575420:CDS |
| TAACTGATAAGAAGTCTTGG+TGG | 0.588531 | 4_1:-79304746 | Msa0575420:CDS |
| AGATTCTTGTGGCATTGACA+GGG | 0.594768 | 4_1:+79305674 | None:intergenic |
| GTCACACAAAACAAACAGCC+TGG | 0.595084 | 4_1:-79305024 | Msa0575420:CDS |
| TTATTGATGCAATAACTCAA+GGG | 0.596947 | 4_1:+79303984 | None:intergenic |
| TGAATTGCATTGCTTCCCTA+AGG | 0.604124 | 4_1:-79304655 | Msa0575420:CDS |
| TAGAATAGGAATACTTCTGT+GGG | 0.608037 | 4_1:+79304589 | None:intergenic |
| CGTGCTTCTGAAACACATAG+TGG | 0.610150 | 4_1:+79305113 | None:intergenic |
| ATATTCTTGTGGCATTGACA+GGG | 0.610566 | 4_1:+79305731 | None:intergenic |
| TGGAAGCAGGGAGGAACATG+AGG | 0.613361 | 4_1:-79304374 | Msa0575420:CDS |
| TGACACAATGTAAACGGAGG+AGG | 0.614714 | 4_1:+79305043 | None:intergenic |
| ATCTCCCCACCAAAAGCCGA+AGG | 0.627349 | 4_1:-79305388 | Msa0575420:intron |
| ACAGAATACTGCCAAACCCA+AGG | 0.631748 | 4_1:-79305089 | Msa0575420:CDS |
| CATTTGTGGAGAGATTCTTG+TGG | 0.666849 | 4_1:+79305663 | None:intergenic |
| TGACAAATGAGATATTCTTG+TGG | 0.673967 | 4_1:+79305720 | None:intergenic |
| GAAATACTTGTTGAAGACAA+CGG | 0.689628 | 4_1:-79305878 | Msa0575420:CDS |
| GTGTGACACAATGTAAACGG+AGG | 0.710783 | 4_1:+79305040 | None:intergenic |
| TAATTGTTATGGAAGCAGGG+AGG | 0.766919 | 4_1:-79304383 | Msa0575420:CDS |
| TTGATGGTCAATGACACCAG+TGG | 0.770879 | 4_1:-79306321 | Msa0575420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAATAGTAGTAA+GGG | - | chr4_1:79305077-79305096 | Msa0575420:CDS | 10.0% |
| !! | TATATTAATGAAAAACAACA+TGG | + | chr4_1:79304223-79304242 | None:intergenic | 15.0% |
| !!! | TTTTCATTAATATAGTTCTT+TGG | - | chr4_1:79304229-79304248 | Msa0575420:CDS | 15.0% |
| !! | TTTGTGTTTATAAGTTATAT+CGG | - | chr4_1:79304539-79304558 | Msa0575420:CDS | 15.0% |
| !! | CAAATTAATTAATAGTAGTA+AGG | - | chr4_1:79305076-79305095 | Msa0575420:CDS | 15.0% |
| !! | TTTAATTATGGAAATTAAGT+TGG | + | chr4_1:79305151-79305170 | None:intergenic | 15.0% |
| !! | AAAAGTTAAAAACAAAAGAT+AGG | - | chr4_1:79305175-79305194 | Msa0575420:intron | 15.0% |
| !! | TTAAATATCCTTTATATACA+AGG | - | chr4_1:79305505-79305524 | Msa0575420:intron | 15.0% |
| !! | AATACTTGGAATATAAAATA+AGG | - | chr4_1:79306532-79306551 | Msa0575420:intron | 15.0% |
| !! | TTTATAATCATATTGTCTAA+TGG | + | chr4_1:79306588-79306607 | None:intergenic | 15.0% |
| !! | ATTAGACAATATGATTATAA+AGG | - | chr4_1:79306587-79306606 | Msa0575420:intron | 15.0% |
| !! | TTTACTGAAATTCAGAATAT+GGG | + | chr4_1:79304685-79304704 | None:intergenic | 20.0% |
| !!! | AGATTTTTTGAATCTCTATA+TGG | - | chr4_1:79304873-79304892 | Msa0575420:CDS | 20.0% |
| !! | ATCTCTATATGGTTAATAAA+AGG | - | chr4_1:79304884-79304903 | Msa0575420:CDS | 20.0% |
| !! | ATGGTTAATAAAAGGATTTA+AGG | - | chr4_1:79304892-79304911 | Msa0575420:CDS | 20.0% |
| !! | CAATGTTACTAATCAATAAA+TGG | + | chr4_1:79305404-79305423 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGTATTAGTGA+AGG | + | chr4_1:79306268-79306287 | None:intergenic | 20.0% |
| !! | TACAAATCAAATAGCAAAAA+TGG | - | chr4_1:79306275-79306294 | Msa0575420:intron | 20.0% |
| !!! | ATTTTGACAAACAAAATGTA+AGG | - | chr4_1:79306658-79306677 | Msa0575420:CDS | 20.0% |
| ! | ATGTACTCACAATCATATAT+AGG | + | chr4_1:79304113-79304132 | None:intergenic | 25.0% |
| ! | AGAAGTAAAGATATACTCAA+AGG | + | chr4_1:79304315-79304334 | None:intergenic | 25.0% |
| ! | TGAACTGTTTATCCAAAAAA+AGG | + | chr4_1:79304452-79304471 | None:intergenic | 25.0% |
| ! | CTTTACTGAAATTCAGAATA+TGG | + | chr4_1:79304686-79304705 | None:intergenic | 25.0% |
| ! | AGTTCTCTACATATTATTGA+AGG | - | chr4_1:79304848-79304867 | Msa0575420:CDS | 25.0% |
| ! | AATTAATTTCAATCTGACTG+AGG | + | chr4_1:79305462-79305481 | None:intergenic | 25.0% |
| !!! | TTGACTTGTAGACAATTTAA+TGG | - | chr4_1:79305916-79305935 | Msa0575420:intron | 25.0% |
| !!! | ACAGTTTTTTAAGAAATGCT+TGG | + | chr4_1:79305993-79306012 | None:intergenic | 25.0% |
| ! | GCAATCAAAATTAGAGATAT+TGG | - | chr4_1:79306189-79306208 | Msa0575420:intron | 25.0% |
| ! | AAATAGCAAAAATGGCTAAA+GGG | - | chr4_1:79306283-79306302 | Msa0575420:intron | 25.0% |
| ! | GGATATGAACATAAAATACT+TGG | - | chr4_1:79306518-79306537 | Msa0575420:intron | 25.0% |
| ! | CTTGGAATATAAAATAAGGT+TGG | - | chr4_1:79306536-79306555 | Msa0575420:intron | 25.0% |
| ! | ATCAATTGAAAAACAAGGAT+GGG | - | chr4_1:79306617-79306636 | Msa0575420:CDS | 25.0% |
| ! | TTATTGATGCAATAACTCAA+GGG | + | chr4_1:79306721-79306740 | None:intergenic | 25.0% |
| TTGCACATTTAAACCTTACT+TGG | - | chr4_1:79304085-79304104 | Msa0575420:CDS | 30.0% | |
| TGCACATTTAAACCTTACTT+GGG | - | chr4_1:79304086-79304105 | Msa0575420:CDS | 30.0% | |
| GCATTATATGTGGAAATAAG+TGG | + | chr4_1:79304176-79304195 | None:intergenic | 30.0% | |
| ACTCATTTCACAAAAGAAAG+TGG | + | chr4_1:79304277-79304296 | None:intergenic | 30.0% | |
| GTCTTATCTATTCTTACCTT+TGG | + | chr4_1:79304421-79304440 | None:intergenic | 30.0% | |
| !!! | AGACATATAGCTCCTTTTTT+TGG | - | chr4_1:79304437-79304456 | Msa0575420:CDS | 30.0% |
| GATAAACAGTTCAATCTAAG+TGG | - | chr4_1:79304459-79304478 | Msa0575420:CDS | 30.0% | |
| TAACTCATGTCAGATTCATT+TGG | + | chr4_1:79304759-79304778 | None:intergenic | 30.0% | |
| ! | GAAATACTTGTTGAAGACAA+CGG | - | chr4_1:79304824-79304843 | Msa0575420:CDS | 30.0% |
| GTGAGATATTCATAGGTTAA+AGG | + | chr4_1:79304922-79304941 | None:intergenic | 30.0% | |
| TGACAAATGAGATATTCTTG+TGG | + | chr4_1:79304985-79305004 | None:intergenic | 30.0% | |
| TTATTACCTTTAGCCATTTG+TGG | + | chr4_1:79305056-79305075 | None:intergenic | 30.0% | |
| !! | TATGGAAATTAAGTTGGTTG+AGG | + | chr4_1:79305145-79305164 | None:intergenic | 30.0% |
| CACAAAGGATGGTAATTATA+AGG | - | chr4_1:79305205-79305224 | Msa0575420:intron | 30.0% | |
| ! | TGATGAAGCCTTGTATATAA+AGG | + | chr4_1:79305516-79305535 | None:intergenic | 30.0% |
| TTTGTGTGACACAATGTAAA+CGG | + | chr4_1:79305668-79305687 | None:intergenic | 30.0% | |
| ! | AAAACGTGTCATGGATTATA+AGG | - | chr4_1:79305704-79305723 | Msa0575420:CDS | 30.0% |
| CAATGAGTAGTGTAACAAAA+TGG | - | chr4_1:79305755-79305774 | Msa0575420:CDS | 30.0% | |
| TCATAACTGATAAGAAGTCT+TGG | - | chr4_1:79305953-79305972 | Msa0575420:intron | 30.0% | |
| !! | TTTAAGAAATGCTTGGTGTT+TGG | + | chr4_1:79305986-79306005 | None:intergenic | 30.0% |
| ! | GCTCTTTATGATACCTTTTA+AGG | + | chr4_1:79306083-79306102 | None:intergenic | 30.0% |
| TAGAATAGGAATACTTCTGT+GGG | + | chr4_1:79306116-79306135 | None:intergenic | 30.0% | |
| ATAGAATAGGAATACTTCTG+TGG | + | chr4_1:79306117-79306136 | None:intergenic | 30.0% | |
| CTATTCTATCAAAGACTTCA+GGG | - | chr4_1:79306128-79306147 | Msa0575420:intron | 30.0% | |
| CAAATAGCAAAAATGGCTAA+AGG | - | chr4_1:79306282-79306301 | Msa0575420:intron | 30.0% | |
| AAACTCTTGTGATGTACTAA+TGG | - | chr4_1:79306368-79306387 | Msa0575420:intron | 30.0% | |
| AACTCTTGTGATGTACTAAT+GGG | - | chr4_1:79306369-79306388 | Msa0575420:intron | 30.0% | |
| !! | TGAAAATTGCATTTTGAGGA+AGG | + | chr4_1:79306428-79306447 | None:intergenic | 30.0% |
| ! | TGGATGAAAATTGCATTTTG+AGG | + | chr4_1:79306432-79306451 | None:intergenic | 30.0% |
| TTTATGTTCATATCCTCTGA+GGG | + | chr4_1:79306513-79306532 | None:intergenic | 30.0% | |
| ! | TTTTATGTTCATATCCTCTG+AGG | + | chr4_1:79306514-79306533 | None:intergenic | 30.0% |
| !!! | CCTTGTTTTTCAATTGATGA+GGG | + | chr4_1:79306615-79306634 | None:intergenic | 30.0% |
| !!! | TCCTTGTTTTTCAATTGATG+AGG | + | chr4_1:79306616-79306635 | None:intergenic | 30.0% |
| CATCAATTGAAAAACAAGGA+TGG | - | chr4_1:79306616-79306635 | Msa0575420:CDS | 30.0% | |
| ATGTAAGGCTTGATGTTAAT+AGG | - | chr4_1:79306673-79306692 | Msa0575420:CDS | 30.0% | |
| ! | CTCATAACGACTAAAGCTTT+TGG | + | chr4_1:79304009-79304028 | None:intergenic | 35.0% |
| TCATATATAGGACCCAAGTA+AGG | + | chr4_1:79304101-79304120 | None:intergenic | 35.0% | |
| AAATAAGTGGCTAATGCAAG+CGG | + | chr4_1:79304163-79304182 | None:intergenic | 35.0% | |
| ACGTAGACATGCATTATATG+TGG | + | chr4_1:79304186-79304205 | None:intergenic | 35.0% | |
| GTCATTGACCATCAACAATT+TGG | + | chr4_1:79304376-79304395 | None:intergenic | 35.0% | |
| GAGAGCTTAAAGAAATAAGC+TGG | - | chr4_1:79304561-79304580 | Msa0575420:CDS | 35.0% | |
| TTCAGCTACAATGTCTTCAA+TGG | + | chr4_1:79304807-79304826 | None:intergenic | 35.0% | |
| CTGACAAGTGAGATATTCAT+AGG | + | chr4_1:79304929-79304948 | None:intergenic | 35.0% | |
| !! | ATATTCTTGTGGCATTGACA+GGG | + | chr4_1:79304974-79304993 | None:intergenic | 35.0% |
| GATGGTAATTATAAGGACTG+TGG | - | chr4_1:79305212-79305231 | Msa0575420:intron | 35.0% | |
| CTAGCAAATGATCTTACCTT+CGG | + | chr4_1:79305333-79305352 | None:intergenic | 35.0% | |
| ! | AGGACCTTGCATTTTCTATT+GGG | + | chr4_1:79305442-79305461 | None:intergenic | 35.0% |
| TGTCACTGAATTCATGGAAA+TGG | + | chr4_1:79305879-79305898 | None:intergenic | 35.0% | |
| TGACAATGTCACTGAATTCA+TGG | + | chr4_1:79305885-79305904 | None:intergenic | 35.0% | |
| TGTCTACAAGTCAAAAACAG+TGG | + | chr4_1:79305910-79305929 | None:intergenic | 35.0% | |
| TAACTGATAAGAAGTCTTGG+TGG | - | chr4_1:79305956-79305975 | Msa0575420:intron | 35.0% | |
| CCTGAAGTCTTTGATAGAAT+AGG | + | chr4_1:79306130-79306149 | None:intergenic | 35.0% | |
| CCTATTCTATCAAAGACTTC+AGG | - | chr4_1:79306127-79306146 | Msa0575420:intron | 35.0% | |
| GTAATCAAAGTAAGAAGCCT+AGG | - | chr4_1:79306211-79306230 | Msa0575420:intron | 35.0% | |
| !! | ATGTTTTTCTGGAGAGAATC+AGG | + | chr4_1:79306239-79306258 | None:intergenic | 35.0% |
| ! | GAAGGATCTTGATGTTTTTC+TGG | + | chr4_1:79306250-79306269 | None:intergenic | 35.0% |
| GGGTTTCAGAGTAATTGTTA+TGG | - | chr4_1:79306308-79306327 | Msa0575420:CDS | 35.0% | |
| AGAGTAATTGTTATGGAAGC+AGG | - | chr4_1:79306315-79306334 | Msa0575420:CDS | 35.0% | |
| GAGTAATTGTTATGGAAGCA+GGG | - | chr4_1:79306316-79306335 | Msa0575420:CDS | 35.0% | |
| ! | TTGCCACAAATGATTTTGCA+AGG | - | chr4_1:79306487-79306506 | Msa0575420:intron | 35.0% |
| CCCTCATCAATTGAAAAACA+AGG | - | chr4_1:79306612-79306631 | Msa0575420:CDS | 35.0% | |
| GTCAAAATACACTGACCTAA+AGG | + | chr4_1:79306646-79306665 | None:intergenic | 35.0% | |
| TCGTTATGAGCAGAAAAAGC+TGG | - | chr4_1:79304019-79304038 | Msa0575420:CDS | 40.0% | |
| CGTTATGAGCAGAAAAAGCT+GGG | - | chr4_1:79304020-79304039 | Msa0575420:CDS | 40.0% | |
| AGCGGTCAATTACATTACAG+AGG | + | chr4_1:79304145-79304164 | None:intergenic | 40.0% | |
| GTGAACATCAAGCTCTCAAT+TGG | - | chr4_1:79304342-79304361 | Msa0575420:CDS | 40.0% | |
| CGTTGACACCAAATTGTTGA+TGG | - | chr4_1:79304365-79304384 | Msa0575420:CDS | 40.0% | |
| ! | GGCTCTCTAAAAATAGCCAA+AGG | - | chr4_1:79304402-79304421 | Msa0575420:CDS | 40.0% |
| ! | AGCACTTGTGAGACTGTTTT+GGG | + | chr4_1:79304622-79304641 | None:intergenic | 40.0% |
| ! | AAGCACTTGTGAGACTGTTT+TGG | + | chr4_1:79304623-79304642 | None:intergenic | 40.0% |
| !! | GATATTCTTGTGGCATTGAC+AGG | + | chr4_1:79304975-79304994 | None:intergenic | 40.0% |
| !! | AGATTCTTGTGGCATTGACA+GGG | + | chr4_1:79305031-79305050 | None:intergenic | 40.0% |
| CATTTGTGGAGAGATTCTTG+TGG | + | chr4_1:79305042-79305061 | None:intergenic | 40.0% | |
| CACAAGAATCTCTCCACAAA+TGG | - | chr4_1:79305040-79305059 | Msa0575420:CDS | 40.0% | |
| ATCTCTCCACAAATGGCTAA+AGG | - | chr4_1:79305047-79305066 | Msa0575420:CDS | 40.0% | |
| GTTAAGATCAGCTCTACTTG+TGG | - | chr4_1:79305103-79305122 | Msa0575420:CDS | 40.0% | |
| AAGATAGGCAGAGTACACAA+AGG | - | chr4_1:79305190-79305209 | Msa0575420:intron | 40.0% | |
| ! | ATGATCTTACCTTCGGCTTT+TGG | + | chr4_1:79305326-79305345 | None:intergenic | 40.0% |
| AGTCTGATGTCTCAGTAAGT+TGG | - | chr4_1:79305351-79305370 | Msa0575420:intron | 40.0% | |
| GTCTGATGTCTCAGTAAGTT+GGG | - | chr4_1:79305352-79305371 | Msa0575420:intron | 40.0% | |
| ! | TTGCATTTTCTATTGGGGGA+GGG | + | chr4_1:79305436-79305455 | None:intergenic | 40.0% |
| ! | GACCTTGCATTTTCTATTGG+GGG | + | chr4_1:79305440-79305459 | None:intergenic | 40.0% |
| ! | GGACCTTGCATTTTCTATTG+GGG | + | chr4_1:79305441-79305460 | None:intergenic | 40.0% |
| ! | GAGGACCTTGCATTTTCTAT+TGG | + | chr4_1:79305443-79305462 | None:intergenic | 40.0% |
| TGCTGGAATGCTGTGATATT+TGG | + | chr4_1:79305824-79305843 | None:intergenic | 40.0% | |
| GCAGTAGAGAATATTACTGC+TGG | + | chr4_1:79305841-79305860 | None:intergenic | 40.0% | |
| GCAGTAATATTCTCTACTGC+AGG | - | chr4_1:79305841-79305860 | Msa0575420:intron | 40.0% | |
| TGAATTGCATTGCTTCCCTA+AGG | - | chr4_1:79306047-79306066 | Msa0575420:intron | 40.0% | |
| TAAGGCCAATGATCACCTTA+GGG | + | chr4_1:79306065-79306084 | None:intergenic | 40.0% | |
| TTAAGGCCAATGATCACCTT+AGG | + | chr4_1:79306066-79306085 | None:intergenic | 40.0% | |
| !! | AGGTGATCATTGGCCTTAAA+AGG | - | chr4_1:79306067-79306086 | Msa0575420:intron | 40.0% |
| AGCAAAAATGGCTAAAGGGT+TGG | - | chr4_1:79306287-79306306 | Msa0575420:intron | 40.0% | |
| GCAAAAATGGCTAAAGGGTT+GGG | - | chr4_1:79306288-79306307 | Msa0575420:intron | 40.0% | |
| TAATTGTTATGGAAGCAGGG+AGG | - | chr4_1:79306319-79306338 | Msa0575420:CDS | 40.0% | |
| GATGTACTAATGGGAGTTCA+TGG | - | chr4_1:79306378-79306397 | Msa0575420:intron | 40.0% | |
| ! | TTCATCCAAGTTGTGCCTTT+TGG | - | chr4_1:79306444-79306463 | Msa0575420:intron | 40.0% |
| TCAAGGGCTTTCTGTAATGT+TGG | + | chr4_1:79306705-79306724 | None:intergenic | 40.0% | |
| GAGCAGAAAAAGCTGGGATA+TGG | - | chr4_1:79304026-79304045 | Msa0575420:CDS | 45.0% | |
| ! | TTGATGGTCAATGACACCAG+TGG | - | chr4_1:79304381-79304400 | Msa0575420:CDS | 45.0% |
| !!! | GGCTATTTTTAGAGAGCCAC+TGG | + | chr4_1:79304400-79304419 | None:intergenic | 45.0% |
| !! | GAGATTCTTGTGGCATTGAC+AGG | + | chr4_1:79305032-79305051 | None:intergenic | 45.0% |
| TAGGCAGAGTACACAAAGGA+TGG | - | chr4_1:79305194-79305213 | Msa0575420:intron | 45.0% | |
| ! | TCTTACCTTCGGCTTTTGGT+GGG | + | chr4_1:79305322-79305341 | None:intergenic | 45.0% |
| ! | ATCTTACCTTCGGCTTTTGG+TGG | + | chr4_1:79305323-79305342 | None:intergenic | 45.0% |
| ! | CTTGCATTTTCTATTGGGGG+AGG | + | chr4_1:79305437-79305456 | None:intergenic | 45.0% |
| CTCCCCCAATAGAAAATGCA+AGG | - | chr4_1:79305435-79305454 | Msa0575420:intron | 45.0% | |
| !! | CGTGCTTCTGAAACACATAG+TGG | + | chr4_1:79305592-79305611 | None:intergenic | 45.0% |
| ACAGAATACTGCCAAACCCA+AGG | - | chr4_1:79305613-79305632 | Msa0575420:intron | 45.0% | |
| TGACACAATGTAAACGGAGG+AGG | + | chr4_1:79305662-79305681 | None:intergenic | 45.0% | |
| GTGTGACACAATGTAAACGG+AGG | + | chr4_1:79305665-79305684 | None:intergenic | 45.0% | |
| GTCACACAAAACAAACAGCC+TGG | - | chr4_1:79305678-79305697 | Msa0575420:CDS | 45.0% | |
| GCATCACTCTTTCGAGCATA+AGG | + | chr4_1:79305730-79305749 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCACTGTGAGACT+TGG | + | chr4_1:79305807-79305826 | None:intergenic | 45.0% |
| TTCTCTACTGCAGGATACAC+TGG | - | chr4_1:79305850-79305869 | Msa0575420:intron | 45.0% | |
| TGCTTCCCTAAGGTGATCAT+TGG | - | chr4_1:79306057-79306076 | Msa0575420:intron | 45.0% | |
| ! | ATCCAAGTTGTGCCTTTTGG+TGG | - | chr4_1:79306447-79306466 | Msa0575420:intron | 45.0% |
| ! | TTCCACCAAAAGGCACAACT+TGG | + | chr4_1:79306452-79306471 | None:intergenic | 45.0% |
| TCCACTTGCATTCCACCAAA+AGG | + | chr4_1:79306462-79306481 | None:intergenic | 45.0% | |
| TTGGTGGAATGCAAGTGGAA+TGG | - | chr4_1:79306463-79306482 | Msa0575420:intron | 45.0% | |
| GGGCCTTGCAAAATCATTTG+TGG | + | chr4_1:79306493-79306512 | None:intergenic | 45.0% | |
| AACAAGGATGGGAAGCCTTT+AGG | - | chr4_1:79306628-79306647 | Msa0575420:CDS | 45.0% | |
| !!! | TAACTTTTTTTTTTTAATTA+TGG | + | chr4_1:79305163-79305182 | None:intergenic | 5.0% |
| ! | CTGGGATATGGAGCATTCGT+TGG | - | chr4_1:79304038-79304057 | Msa0575420:CDS | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+TGG | + | chr4_1:79304966-79304985 | None:intergenic | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+TGG | + | chr4_1:79304966-79304985 | None:intergenic | 50.0% |
| ! | CTTACCTTCGGCTTTTGGTG+GGG | + | chr4_1:79305321-79305340 | None:intergenic | 50.0% |
| GCCAAACCCAAGGAGATATC+CGG | - | chr4_1:79305623-79305642 | Msa0575420:intron | 50.0% | |
| CCAAACCCAAGGAGATATCC+GGG | - | chr4_1:79305624-79305643 | Msa0575420:intron | 50.0% | |
| ATGCACCCGGATATCTCCTT+GGG | + | chr4_1:79305632-79305651 | None:intergenic | 50.0% | |
| ! | AGGAGGATTTTCCATGCACC+CGG | + | chr4_1:79305645-79305664 | None:intergenic | 50.0% |
| ! | TCCATGACACGTTTTCAGCC+AGG | + | chr4_1:79305699-79305718 | None:intergenic | 50.0% |
| CTAATGGGAGTTCATGGTGC+AGG | - | chr4_1:79306384-79306403 | Msa0575420:intron | 50.0% | |
| ! | GCCTTTTGGTGGAATGCAAG+TGG | - | chr4_1:79306458-79306477 | Msa0575420:intron | 50.0% |
| ! | TGATTTTGCAAGGCCCTCAG+AGG | - | chr4_1:79306497-79306516 | Msa0575420:intron | 50.0% |
| ATCTCCCCACCAAAAGCCGA+AGG | - | chr4_1:79305314-79305333 | Msa0575420:intron | 55.0% | |
| TTCTATTGGGGGAGGGCAGA+TGG | + | chr4_1:79305429-79305448 | None:intergenic | 55.0% | |
| CCCGGATATCTCCTTGGGTT+TGG | + | chr4_1:79305627-79305646 | None:intergenic | 55.0% | |
| CATGCACCCGGATATCTCCT+TGG | + | chr4_1:79305633-79305652 | None:intergenic | 55.0% | |
| CAAGGAGATATCCGGGTGCA+TGG | - | chr4_1:79305631-79305650 | Msa0575420:intron | 55.0% | |
| GCCTGGCTGAAAACGTGTCA+TGG | - | chr4_1:79305695-79305714 | Msa0575420:CDS | 55.0% | |
| !! | CACTGTGAGACTTGGTGGCT+AGG | + | chr4_1:79305799-79305818 | None:intergenic | 55.0% |
| TGGTGCACTGTGAGACTTGG+TGG | + | chr4_1:79305804-79305823 | None:intergenic | 55.0% | |
| CTGGAGAGAATCAGGAGCCT+AGG | + | chr4_1:79306231-79306250 | None:intergenic | 55.0% | |
| TGGAAGCAGGGAGGAACATG+AGG | - | chr4_1:79306328-79306347 | Msa0575420:CDS | 55.0% | |
| ! | GGCTTTTGGTGGGGAGATGC+TGG | + | chr4_1:79305312-79305331 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79303984 | 79306740 | 79303984 | ID=Msa0575420;Name=Msa0575420 |
| chr4_1 | mRNA | 79303984 | 79306740 | 79303984 | ID=Msa0575420-mRNA-1;Parent=Msa0575420;Name=Msa0575420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.33|1|1|1|6|0|549 |
| chr4_1 | exon | 79306602 | 79306740 | 79306602 | ID=Msa0575420-mRNA-1:exon:28285;Parent=Msa0575420-mRNA-1 |
| chr4_1 | exon | 79306301 | 79306381 | 79306301 | ID=Msa0575420-mRNA-1:exon:28284;Parent=Msa0575420-mRNA-1 |
| chr4_1 | exon | 79305855 | 79305911 | 79305855 | ID=Msa0575420-mRNA-1:exon:28283;Parent=Msa0575420-mRNA-1 |
| chr4_1 | exon | 79305656 | 79305775 | 79305656 | ID=Msa0575420-mRNA-1:exon:28282;Parent=Msa0575420-mRNA-1 |
| chr4_1 | exon | 79305389 | 79305451 | 79305389 | ID=Msa0575420-mRNA-1:exon:28281;Parent=Msa0575420-mRNA-1 |
| chr4_1 | exon | 79303984 | 79305173 | 79303984 | ID=Msa0575420-mRNA-1:exon:28280;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79306602 | 79306740 | 79306602 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79306301 | 79306381 | 79306301 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79305855 | 79305911 | 79305855 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79305656 | 79305775 | 79305656 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79305389 | 79305451 | 79305389 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| chr4_1 | CDS | 79303984 | 79305173 | 79303984 | ID=Msa0575420-mRNA-1:cds;Parent=Msa0575420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
