Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372520 | XP_003631055.2 | 93.134 | 568 | 20 | 3 | 1 | 549 | 1 | 568 | 0.0 | 1076 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372520 | sp|Q10I20|XAT3_ORYSJ | 45.758 | 389 | 194 | 9 | 166 | 548 | 198 | 575 | 3.59e-115 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372520 | G7LCG2 | 95.446 | 549 | 6 | 1 | 1 | 549 | 1 | 530 | 0.0 | 1075 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206370 | Msa1372520 | 0.810103 | 1.361087e-50 | -8.615850e-47 |
| Msa1296860 | Msa1372520 | 0.822234 | 2.642422e-53 | -8.615850e-47 |
| Msa0386540 | Msa1372520 | 0.815915 | 7.238676e-52 | -8.615850e-47 |
| Msa0336430 | Msa1372520 | 0.802712 | 4.925067e-49 | -8.615850e-47 |
| Msa0336460 | Msa1372520 | 0.801268 | 9.754072e-49 | -8.615850e-47 |
| Msa0575420 | Msa1372520 | 0.872091 | 4.150557e-67 | -8.615850e-47 |
| Msa0930180 | Msa1372520 | 0.979457 | 5.197953e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372520 | MtrunA17_Chr8g0392591 | 94.718 | 549 | 6 | 2 | 1 | 549 | 1 | 526 | 0.0 | 1062 |
| Msa1372520 | MtrunA17_Chr5g0398231 | 83.761 | 351 | 15 | 3 | 155 | 503 | 12 | 322 | 0.0 | 587 |
| Msa1372520 | MtrunA17_Chr7g0257291 | 34.895 | 427 | 220 | 8 | 171 | 545 | 106 | 526 | 1.35e-80 | 262 |
| Msa1372520 | MtrunA17_Chr5g0418331 | 37.209 | 344 | 196 | 11 | 211 | 545 | 31 | 363 | 2.90e-69 | 227 |
| Msa1372520 | MtrunA17_Chr5g0418341 | 36.416 | 346 | 197 | 11 | 211 | 545 | 65 | 398 | 6.16e-68 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372520 | AT3G18170.2 | 44.092 | 567 | 260 | 12 | 1 | 547 | 6 | 535 | 4.51e-160 | 467 |
| Msa1372520 | AT3G18170.1 | 51.026 | 390 | 176 | 5 | 166 | 547 | 2 | 384 | 2.30e-141 | 414 |
| Msa1372520 | AT3G18180.1 | 48.905 | 411 | 192 | 8 | 141 | 548 | 71 | 466 | 1.79e-138 | 409 |
| Msa1372520 | AT3G10320.1 | 34.571 | 431 | 259 | 8 | 128 | 543 | 66 | 488 | 2.61e-83 | 268 |
| Msa1372520 | AT2G41640.3 | 36.364 | 385 | 226 | 9 | 174 | 546 | 14 | 391 | 1.96e-82 | 263 |
| Msa1372520 | AT2G41640.1 | 36.364 | 385 | 226 | 9 | 174 | 546 | 107 | 484 | 7.95e-81 | 262 |
| Msa1372520 | AT2G41640.2 | 36.772 | 378 | 220 | 9 | 174 | 539 | 107 | 477 | 7.29e-80 | 259 |
| Msa1372520 | AT3G57380.1 | 35.806 | 391 | 228 | 8 | 173 | 546 | 102 | 486 | 2.28e-79 | 258 |
| Msa1372520 | AT3G57380.2 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 1.34e-78 | 253 |
| Msa1372520 | AT3G57380.3 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 1.34e-78 | 253 |
| Msa1372520 | AT2G03370.2 | 31.296 | 409 | 241 | 16 | 158 | 543 | 51 | 442 | 1.94e-59 | 204 |
| Msa1372520 | AT2G03370.1 | 31.296 | 409 | 241 | 16 | 158 | 543 | 49 | 440 | 2.33e-59 | 204 |
| Msa1372520 | AT2G03360.2 | 30.807 | 409 | 249 | 14 | 155 | 543 | 49 | 443 | 1.42e-58 | 202 |
| Msa1372520 | AT2G03360.1 | 30.807 | 409 | 249 | 14 | 155 | 543 | 45 | 439 | 1.51e-58 | 201 |
Find 95 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTGTAGACAATTTAA+TGG | 0.234810 | tig0019280:-39069 | Msa1372520:CDS |
| TGCTGGAATGCTGTGATATT+TGG | 0.250735 | tig0019280:+39164 | None:intergenic |
| TTCATCCAAGTTGTGCCTTT+TGG | 0.253333 | tig0019280:-38541 | Msa1372520:CDS |
| ATGATCTTACCTTCGGCTTT+TGG | 0.269229 | tig0019280:+39662 | None:intergenic |
| CCTATTCTATCAAAGACTTC+AGG | 0.290299 | tig0019280:-38858 | Msa1372520:CDS |
| AGGTGATCATTGGCCTTAAA+AGG | 0.292223 | tig0019280:-38918 | Msa1372520:CDS |
| ATGTAAGGCTTGATGTTAAT+AGG | 0.294844 | tig0019280:-38312 | Msa1372520:CDS |
| GCAATCAAAATTAGAGATAT+TGG | 0.305071 | tig0019280:-38796 | Msa1372520:CDS |
| GTGGCATTGACAGGGTTCTT+TGG | 0.305873 | tig0019280:+40021 | None:intergenic |
| AATACTTGGAATATAAAATA+AGG | 0.316625 | tig0019280:-38453 | Msa1372520:CDS |
| TTTATAATCATATTGTCTAA+TGG | 0.326079 | tig0019280:+38400 | None:intergenic |
| GTCATTGACCATCAACAATT+TGG | 0.335573 | tig0019280:+40612 | None:intergenic |
| AAAACGTGTCATGGATTATA+AGG | 0.339004 | tig0019280:-39281 | Msa1372520:CDS |
| TTTAAGAAATGCTTGGTGTT+TGG | 0.347169 | tig0019280:+39002 | None:intergenic |
| CTTGAGTTATTGCATCAATA+AGG | 0.348987 | tig0019280:-38265 | None:intergenic |
| TTGCACATTTAAACCTTACT+TGG | 0.349676 | tig0019280:-40900 | Msa1372520:CDS |
| CTCATAACGACTAAAGCTTT+TGG | 0.352882 | tig0019280:+40979 | None:intergenic |
| AACAAGGATGGGAAGCCTTT+AGG | 0.356870 | tig0019280:-38357 | Msa1372520:CDS |
| TTAAGGCCAATGATCACCTT+AGG | 0.372315 | tig0019280:+38922 | None:intergenic |
| AAACTCTTGTGATGTACTAA+TGG | 0.373358 | tig0019280:-38617 | Msa1372520:CDS |
| GCATCACTCTTTCGAGCATA+AGG | 0.378376 | tig0019280:+39258 | None:intergenic |
| CCCGGATATCTCCTTGGGTT+TGG | 0.380512 | tig0019280:+39361 | None:intergenic |
| ATTAGACAATATGATTATAA+AGG | 0.393436 | tig0019280:-38398 | Msa1372520:CDS |
| TTATTACCTTTAGCCATTTG+TGG | 0.398154 | tig0019280:+39931 | None:intergenic |
| GATATTCTTGTGGCATTGAC+AGG | 0.402195 | tig0019280:+40012 | None:intergenic |
| GAGATTCTTGTGGCATTGAC+AGG | 0.403672 | tig0019280:+39955 | None:intergenic |
| CATGCACCCGGATATCTCCT+TGG | 0.403742 | tig0019280:+39355 | None:intergenic |
| TGTCACTGAATTCATGGAAA+TGG | 0.404556 | tig0019280:+39109 | None:intergenic |
| AGAGTAATTGTTATGGAAGC+AGG | 0.405546 | tig0019280:-38670 | Msa1372520:CDS |
| TGACAATGTCACTGAATTCA+TGG | 0.407771 | tig0019280:+39103 | None:intergenic |
| ATGCACCCGGATATCTCCTT+GGG | 0.421105 | tig0019280:+39356 | None:intergenic |
| CTATTCTATCAAAGACTTCA+GGG | 0.422298 | tig0019280:-38857 | Msa1372520:CDS |
| CGTTGACACCAAATTGTTGA+TGG | 0.427312 | tig0019280:-40620 | Msa1372520:CDS |
| ATGTACTCACAATCATATAT+AGG | 0.428118 | tig0019280:+40875 | None:intergenic |
| TGCTTCCCTAAGGTGATCAT+TGG | 0.434274 | tig0019280:-38928 | Msa1372520:CDS |
| CCTGAAGTCTTTGATAGAAT+AGG | 0.436083 | tig0019280:+38858 | None:intergenic |
| GTCAAAATACACTGACCTAA+AGG | 0.444673 | tig0019280:+38342 | None:intergenic |
| GCCAAACCCAAGGAGATATC+CGG | 0.449399 | tig0019280:-39362 | Msa1372520:CDS |
| GTGAACATCAAGCTCTCAAT+TGG | 0.449684 | tig0019280:-40643 | Msa1372520:CDS |
| CAATGAGTAGTGTAACAAAA+TGG | 0.461073 | tig0019280:-39230 | Msa1372520:CDS |
| GGGTTTCAGAGTAATTGTTA+TGG | 0.461461 | tig0019280:-38677 | Msa1372520:CDS |
| TGGTGCACTGTGAGACTTGG+TGG | 0.463102 | tig0019280:+39184 | None:intergenic |
| GTGGCATTGACAGGGTTCTT+CGG | 0.465091 | tig0019280:+39964 | None:intergenic |
| CACTGTGAGACTTGGTGGCT+AGG | 0.470879 | tig0019280:+39189 | None:intergenic |
| CTTGGAATATAAAATAAGGT+TGG | 0.474476 | tig0019280:-38449 | Msa1372520:CDS |
| CACAAGAATCTCTCCACAAA+TGG | 0.484320 | tig0019280:-39944 | Msa1372520:CDS |
| GGATATGAACATAAAATACT+TGG | 0.485648 | tig0019280:-38467 | Msa1372520:CDS |
| CTGGAGAGAATCAGGAGCCT+AGG | 0.487042 | tig0019280:+38757 | None:intergenic |
| TCCACTTGCATTCCACCAAA+AGG | 0.487171 | tig0019280:+38526 | None:intergenic |
| TTCTCTACTGCAGGATACAC+TGG | 0.490671 | tig0019280:-39135 | Msa1372520:CDS |
| ATCTCTCCACAAATGGCTAA+AGG | 0.495003 | tig0019280:-39937 | Msa1372520:intron |
| GCAGTAGAGAATATTACTGC+TGG | 0.498916 | tig0019280:+39147 | None:intergenic |
| TAAGGCCAATGATCACCTTA+GGG | 0.500135 | tig0019280:+38923 | None:intergenic |
| TTCCACCAAAAGGCACAACT+TGG | 0.501284 | tig0019280:+38536 | None:intergenic |
| GATGTACTAATGGGAGTTCA+TGG | 0.502973 | tig0019280:-38607 | Msa1372520:CDS |
| AACTCTTGTGATGTACTAAT+GGG | 0.504329 | tig0019280:-38616 | Msa1372520:CDS |
| GGGCCTTGCAAAATCATTTG+TGG | 0.505794 | tig0019280:+38495 | None:intergenic |
| AGTTCTCTACATATTATTGA+AGG | 0.511289 | tig0019280:-40136 | Msa1372520:intron |
| TCAAGGGCTTTCTGTAATGT+TGG | 0.512220 | tig0019280:+38283 | None:intergenic |
| GTAATCAAAGTAAGAAGCCT+AGG | 0.519633 | tig0019280:-38774 | Msa1372520:CDS |
| CTTGCTTCTGAAACACATAG+TGG | 0.520045 | tig0019280:+39396 | None:intergenic |
| CTGGGATATGGAGCATTCGT+TGG | 0.522124 | tig0019280:-40947 | Msa1372520:CDS |
| GCAGTAATATTCTCTACTGC+AGG | 0.528045 | tig0019280:-39144 | Msa1372520:CDS |
| CTTATTGATGCAATAACTCA+AGG | 0.528098 | tig0019280:+38266 | None:intergenic |
| TCATAACTGATAAGAAGTCT+TGG | 0.529455 | tig0019280:-39032 | Msa1372520:CDS |
| ATTTGGTGCACTGTGAGACT+TGG | 0.529586 | tig0019280:+39181 | None:intergenic |
| TTTATGTTCATATCCTCTGA+GGG | 0.533023 | tig0019280:+38475 | None:intergenic |
| TTTGTGTGACACAATGTAAA+CGG | 0.540817 | tig0019280:+39320 | None:intergenic |
| GCCTGGCTGAAAACGTGTCA+TGG | 0.547588 | tig0019280:-39290 | Msa1372520:CDS |
| CAAGGAGATATCCGGGTGCA+TGG | 0.548034 | tig0019280:-39354 | Msa1372520:CDS |
| TGCACATTTAAACCTTACTT+GGG | 0.549478 | tig0019280:-40899 | Msa1372520:CDS |
| CTAATGGGAGTTCATGGTGC+AGG | 0.551094 | tig0019280:-38601 | Msa1372520:CDS |
| TCATATATAGGACCCAAGTA+AGG | 0.567103 | tig0019280:+40887 | None:intergenic |
| CCAAACCCAAGGAGATATCC+GGG | 0.575035 | tig0019280:-39361 | Msa1372520:CDS |
| GAGTAATTGTTATGGAAGCA+GGG | 0.577494 | tig0019280:-38669 | Msa1372520:CDS |
| ATAGAATAGGAATACTTCTG+TGG | 0.579492 | tig0019280:+38871 | None:intergenic |
| TATTTGATTTGTATTAGTGA+AGG | 0.583692 | tig0019280:+38720 | None:intergenic |
| TTGGTGGAATGCAAGTGGAA+TGG | 0.588217 | tig0019280:-38522 | Msa1372520:CDS |
| TAACTGATAAGAAGTCTTGG+TGG | 0.588531 | tig0019280:-39029 | Msa1372520:CDS |
| AGATTCTTGTGGCATTGACA+GGG | 0.594768 | tig0019280:+39956 | None:intergenic |
| GTCACACAAAACAAACAGCC+TGG | 0.595084 | tig0019280:-39307 | Msa1372520:CDS |
| TTATTGATGCAATAACTCAA+GGG | 0.596947 | tig0019280:+38267 | None:intergenic |
| TGAATTGCATTGCTTCCCTA+AGG | 0.604124 | tig0019280:-38938 | Msa1372520:CDS |
| TAGAATAGGAATACTTCTGT+GGG | 0.608037 | tig0019280:+38872 | None:intergenic |
| ATATTCTTGTGGCATTGACA+GGG | 0.610566 | tig0019280:+40013 | None:intergenic |
| TGGAAGCAGGGAGGAACATG+AGG | 0.613361 | tig0019280:-38657 | Msa1372520:CDS |
| TGACACAATGTAAACGGAGG+AGG | 0.614714 | tig0019280:+39326 | None:intergenic |
| ATCTCCCCACCAAAAGCCGA+AGG | 0.627349 | tig0019280:-39671 | Msa1372520:intron |
| ACAGAATACTGCCAAACCCA+AGG | 0.631748 | tig0019280:-39372 | Msa1372520:CDS |
| CATTTGTGGAGAGATTCTTG+TGG | 0.666849 | tig0019280:+39945 | None:intergenic |
| TGACAAATGAGATATTCTTG+TGG | 0.673967 | tig0019280:+40002 | None:intergenic |
| GAAATACTTGTTGAAGACAA+CGG | 0.689628 | tig0019280:-40160 | Msa1372520:CDS |
| GTGTGACACAATGTAAACGG+AGG | 0.710783 | tig0019280:+39323 | None:intergenic |
| TAATTGTTATGGAAGCAGGG+AGG | 0.766919 | tig0019280:-38666 | Msa1372520:CDS |
| TTGATGGTCAATGACACCAG+TGG | 0.770879 | tig0019280:-40604 | Msa1372520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAATAGTAGTAA+GGG | - | tig0019280:39361-39380 | Msa1372520:CDS | 10.0% |
| !! | TATATTAATGAAAAACAACA+TGG | + | tig0019280:38506-38525 | None:intergenic | 15.0% |
| !!! | TTTTCATTAATATAGTTCTT+TGG | - | tig0019280:38512-38531 | Msa1372520:CDS | 15.0% |
| !! | TTTGTGTTTATAAGTTATAT+CGG | - | tig0019280:38822-38841 | Msa1372520:CDS | 15.0% |
| !! | CAAATTAATTAATAGTAGTA+AGG | - | tig0019280:39360-39379 | Msa1372520:CDS | 15.0% |
| !! | TTTAATTATGGAAATTAAGT+TGG | + | tig0019280:39435-39454 | None:intergenic | 15.0% |
| !! | TTAAATATCCTTTATATACA+AGG | - | tig0019280:39788-39807 | Msa1372520:intron | 15.0% |
| !! | AATACTTGGAATATAAAATA+AGG | - | tig0019280:40815-40834 | Msa1372520:intron | 15.0% |
| !! | TTTATAATCATATTGTCTAA+TGG | + | tig0019280:40871-40890 | None:intergenic | 15.0% |
| !! | ATTAGACAATATGATTATAA+AGG | - | tig0019280:40870-40889 | Msa1372520:intron | 15.0% |
| !! | TTTACTGAAATTCAGAATAT+GGG | + | tig0019280:38968-38987 | None:intergenic | 20.0% |
| !!! | AGATTTTTTGAATCTCTATA+TGG | - | tig0019280:39157-39176 | Msa1372520:CDS | 20.0% |
| !! | ATCTCTATATGGTTAATAAA+AGG | - | tig0019280:39168-39187 | Msa1372520:CDS | 20.0% |
| !! | ATGGTTAATAAAAGGATTTA+AGG | - | tig0019280:39176-39195 | Msa1372520:CDS | 20.0% |
| !! | AAAAGTTAAAAACAACAGAT+AGG | - | tig0019280:39458-39477 | Msa1372520:intron | 20.0% |
| !! | CAATGTTACTAATCAATAAA+TGG | + | tig0019280:39687-39706 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGTATTAGTGA+AGG | + | tig0019280:40551-40570 | None:intergenic | 20.0% |
| !! | TACAAATCAAATAGCAAAAA+TGG | - | tig0019280:40558-40577 | Msa1372520:intron | 20.0% |
| !!! | ATTTTGACAAACAAAATGTA+AGG | - | tig0019280:40941-40960 | Msa1372520:CDS | 20.0% |
| ! | ATGTACTCACAATCATATAT+AGG | + | tig0019280:38396-38415 | None:intergenic | 25.0% |
| ! | AGAAGTAAAGATATACTCAA+AGG | + | tig0019280:38598-38617 | None:intergenic | 25.0% |
| ! | TGAACTGTTTATCCAAAAAA+AGG | + | tig0019280:38735-38754 | None:intergenic | 25.0% |
| ! | CTTTACTGAAATTCAGAATA+TGG | + | tig0019280:38969-38988 | None:intergenic | 25.0% |
| ! | AGTTCTCTACATATTATTGA+AGG | - | tig0019280:39132-39151 | Msa1372520:CDS | 25.0% |
| ! | AATTAATTTCAATCTGACTG+AGG | + | tig0019280:39745-39764 | None:intergenic | 25.0% |
| !!! | TTGACTTGTAGACAATTTAA+TGG | - | tig0019280:40199-40218 | Msa1372520:intron | 25.0% |
| !!! | ACAGTTTTTTAAGAAATGCT+TGG | + | tig0019280:40276-40295 | None:intergenic | 25.0% |
| ! | GCAATCAAAATTAGAGATAT+TGG | - | tig0019280:40472-40491 | Msa1372520:intron | 25.0% |
| ! | AAATAGCAAAAATGGCTAAA+GGG | - | tig0019280:40566-40585 | Msa1372520:intron | 25.0% |
| ! | GGATATGAACATAAAATACT+TGG | - | tig0019280:40801-40820 | Msa1372520:intron | 25.0% |
| ! | CTTGGAATATAAAATAAGGT+TGG | - | tig0019280:40819-40838 | Msa1372520:intron | 25.0% |
| ! | ATCAATTGAAAAACAAGGAT+GGG | - | tig0019280:40900-40919 | Msa1372520:CDS | 25.0% |
| ! | TTATTGATGCAATAACTCAA+GGG | + | tig0019280:41004-41023 | None:intergenic | 25.0% |
| TTGCACATTTAAACCTTACT+TGG | - | tig0019280:38368-38387 | Msa1372520:CDS | 30.0% | |
| TGCACATTTAAACCTTACTT+GGG | - | tig0019280:38369-38388 | Msa1372520:CDS | 30.0% | |
| GCATTATATGTGGAAATAAG+TGG | + | tig0019280:38459-38478 | None:intergenic | 30.0% | |
| ACTTAGACATGCATTATATG+TGG | + | tig0019280:38469-38488 | None:intergenic | 30.0% | |
| ACTCATTTCACAAAAGAAAG+TGG | + | tig0019280:38560-38579 | None:intergenic | 30.0% | |
| GTCTTATCTATTCTTACCTT+TGG | + | tig0019280:38704-38723 | None:intergenic | 30.0% | |
| !!! | AGACATATAGCTCCTTTTTT+TGG | - | tig0019280:38720-38739 | Msa1372520:CDS | 30.0% |
| GATAAACAGTTCAATCTAAG+TGG | - | tig0019280:38742-38761 | Msa1372520:CDS | 30.0% | |
| CAGTAAAGTTAACACAATAG+AGG | - | tig0019280:38981-39000 | Msa1372520:CDS | 30.0% | |
| TAACTCATGTCAGATTCATT+TGG | + | tig0019280:39043-39062 | None:intergenic | 30.0% | |
| ! | GAAATACTTGTTGAAGACAA+CGG | - | tig0019280:39108-39127 | Msa1372520:CDS | 30.0% |
| GTGAGATATTCATAGGTTAA+AGG | + | tig0019280:39206-39225 | None:intergenic | 30.0% | |
| TGACAAATGAGATATTCTTG+TGG | + | tig0019280:39269-39288 | None:intergenic | 30.0% | |
| TTATTACCTTTAGCCATTTG+TGG | + | tig0019280:39340-39359 | None:intergenic | 30.0% | |
| !! | TATGGAAATTAAGTTGGTTG+AGG | + | tig0019280:39429-39448 | None:intergenic | 30.0% |
| CACAAAGGATGGTAATTATA+AGG | - | tig0019280:39488-39507 | Msa1372520:intron | 30.0% | |
| ! | TGATGAAGCCTTGTATATAA+AGG | + | tig0019280:39799-39818 | None:intergenic | 30.0% |
| TTTGTGTGACACAATGTAAA+CGG | + | tig0019280:39951-39970 | None:intergenic | 30.0% | |
| ! | AAAACGTGTCATGGATTATA+AGG | - | tig0019280:39987-40006 | Msa1372520:CDS | 30.0% |
| CAATGAGTAGTGTAACAAAA+TGG | - | tig0019280:40038-40057 | Msa1372520:CDS | 30.0% | |
| TCATAACTGATAAGAAGTCT+TGG | - | tig0019280:40236-40255 | Msa1372520:intron | 30.0% | |
| !! | TTTAAGAAATGCTTGGTGTT+TGG | + | tig0019280:40269-40288 | None:intergenic | 30.0% |
| ! | GCTCTTTATGATACCTTTTA+AGG | + | tig0019280:40366-40385 | None:intergenic | 30.0% |
| TAGAATAGGAATACTTCTGT+GGG | + | tig0019280:40399-40418 | None:intergenic | 30.0% | |
| ATAGAATAGGAATACTTCTG+TGG | + | tig0019280:40400-40419 | None:intergenic | 30.0% | |
| CTATTCTATCAAAGACTTCA+GGG | - | tig0019280:40411-40430 | Msa1372520:intron | 30.0% | |
| CAAATAGCAAAAATGGCTAA+AGG | - | tig0019280:40565-40584 | Msa1372520:intron | 30.0% | |
| AAACTCTTGTGATGTACTAA+TGG | - | tig0019280:40651-40670 | Msa1372520:intron | 30.0% | |
| AACTCTTGTGATGTACTAAT+GGG | - | tig0019280:40652-40671 | Msa1372520:intron | 30.0% | |
| !! | TGAAAATTGCATTTTGAGGA+AGG | + | tig0019280:40711-40730 | None:intergenic | 30.0% |
| ! | TGGATGAAAATTGCATTTTG+AGG | + | tig0019280:40715-40734 | None:intergenic | 30.0% |
| TTTATGTTCATATCCTCTGA+GGG | + | tig0019280:40796-40815 | None:intergenic | 30.0% | |
| ! | TTTTATGTTCATATCCTCTG+AGG | + | tig0019280:40797-40816 | None:intergenic | 30.0% |
| !!! | CCTTGTTTTTCAATTGATGA+GGG | + | tig0019280:40898-40917 | None:intergenic | 30.0% |
| !!! | TCCTTGTTTTTCAATTGATG+AGG | + | tig0019280:40899-40918 | None:intergenic | 30.0% |
| CATCAATTGAAAAACAAGGA+TGG | - | tig0019280:40899-40918 | Msa1372520:CDS | 30.0% | |
| ATGTAAGGCTTGATGTTAAT+AGG | - | tig0019280:40956-40975 | Msa1372520:CDS | 30.0% | |
| ! | CTCATAACGACTAAAGCTTT+TGG | + | tig0019280:38292-38311 | None:intergenic | 35.0% |
| TCATATATAGGACCCAAGTA+AGG | + | tig0019280:38384-38403 | None:intergenic | 35.0% | |
| AGCGGTTAATTACATTACAG+AGG | + | tig0019280:38428-38447 | None:intergenic | 35.0% | |
| AAATAAGTGGCTAATGCAAG+CGG | + | tig0019280:38446-38465 | None:intergenic | 35.0% | |
| GTCATTGACCATCAACAATT+TGG | + | tig0019280:38659-38678 | None:intergenic | 35.0% | |
| GAGAGCTTAAAGAAATAAGC+TGG | - | tig0019280:38844-38863 | Msa1372520:CDS | 35.0% | |
| TTCAGCTACAATGTCTTCAA+TGG | + | tig0019280:39091-39110 | None:intergenic | 35.0% | |
| CTGACAAGTGAGATATTCAT+AGG | + | tig0019280:39213-39232 | None:intergenic | 35.0% | |
| !! | ATATTCTTGTGGCATTGACA+GGG | + | tig0019280:39258-39277 | None:intergenic | 35.0% |
| GATGGTAATTATAAGGACTG+TGG | - | tig0019280:39495-39514 | Msa1372520:intron | 35.0% | |
| CTAGCAAATGATCTTACCTT+CGG | + | tig0019280:39616-39635 | None:intergenic | 35.0% | |
| ! | AGGACCTTGCATTTTCTATT+GGG | + | tig0019280:39725-39744 | None:intergenic | 35.0% |
| TGTCACTGAATTCATGGAAA+TGG | + | tig0019280:40162-40181 | None:intergenic | 35.0% | |
| TGACAATGTCACTGAATTCA+TGG | + | tig0019280:40168-40187 | None:intergenic | 35.0% | |
| TGTCTACAAGTCAAAAACAG+TGG | + | tig0019280:40193-40212 | None:intergenic | 35.0% | |
| TAACTGATAAGAAGTCTTGG+TGG | - | tig0019280:40239-40258 | Msa1372520:intron | 35.0% | |
| CCTGAAGTCTTTGATAGAAT+AGG | + | tig0019280:40413-40432 | None:intergenic | 35.0% | |
| CCTATTCTATCAAAGACTTC+AGG | - | tig0019280:40410-40429 | Msa1372520:intron | 35.0% | |
| GTAATCAAAGTAAGAAGCCT+AGG | - | tig0019280:40494-40513 | Msa1372520:intron | 35.0% | |
| !! | ATGTTTTTCTGGAGAGAATC+AGG | + | tig0019280:40522-40541 | None:intergenic | 35.0% |
| ! | GAAGGATCTTGATGTTTTTC+TGG | + | tig0019280:40533-40552 | None:intergenic | 35.0% |
| GGGTTTCAGAGTAATTGTTA+TGG | - | tig0019280:40591-40610 | Msa1372520:CDS | 35.0% | |
| AGAGTAATTGTTATGGAAGC+AGG | - | tig0019280:40598-40617 | Msa1372520:CDS | 35.0% | |
| GAGTAATTGTTATGGAAGCA+GGG | - | tig0019280:40599-40618 | Msa1372520:CDS | 35.0% | |
| ! | TTGCCACAAATGATTTTGCA+AGG | - | tig0019280:40770-40789 | Msa1372520:intron | 35.0% |
| CCCTCATCAATTGAAAAACA+AGG | - | tig0019280:40895-40914 | Msa1372520:CDS | 35.0% | |
| GTCAAAATACACTGACCTAA+AGG | + | tig0019280:40929-40948 | None:intergenic | 35.0% | |
| TCGTTATGAGCAGAAAAAGC+TGG | - | tig0019280:38302-38321 | Msa1372520:CDS | 40.0% | |
| CGTTATGAGCAGAAAAAGCT+GGG | - | tig0019280:38303-38322 | Msa1372520:CDS | 40.0% | |
| GTGAACATCAAGCTCTCAAT+TGG | - | tig0019280:38625-38644 | Msa1372520:CDS | 40.0% | |
| CGTTGACACCAAATTGTTGA+TGG | - | tig0019280:38648-38667 | Msa1372520:CDS | 40.0% | |
| ! | GGCTCTCTAAAAATAGCCAA+AGG | - | tig0019280:38685-38704 | Msa1372520:CDS | 40.0% |
| ! | AGCACTTGTGAGACTGTTTT+GGG | + | tig0019280:38905-38924 | None:intergenic | 40.0% |
| ! | AAGCACTTGTGAGACTGTTT+TGG | + | tig0019280:38906-38925 | None:intergenic | 40.0% |
| !! | GATATTCTTGTGGCATTGAC+AGG | + | tig0019280:39259-39278 | None:intergenic | 40.0% |
| !! | AGATTCTTGTGGCATTGACA+GGG | + | tig0019280:39315-39334 | None:intergenic | 40.0% |
| CATTTGTGGAGAGATTCTTG+TGG | + | tig0019280:39326-39345 | None:intergenic | 40.0% | |
| CACAAGAATCTCTCCACAAA+TGG | - | tig0019280:39324-39343 | Msa1372520:CDS | 40.0% | |
| ATCTCTCCACAAATGGCTAA+AGG | - | tig0019280:39331-39350 | Msa1372520:CDS | 40.0% | |
| ! | ATGATCTTACCTTCGGCTTT+TGG | + | tig0019280:39609-39628 | None:intergenic | 40.0% |
| AGTCTGATGTCTCAGTAAGT+TGG | - | tig0019280:39634-39653 | Msa1372520:intron | 40.0% | |
| GTCTGATGTCTCAGTAAGTT+GGG | - | tig0019280:39635-39654 | Msa1372520:intron | 40.0% | |
| ! | TTGCATTTTCTATTGGGGGA+GGG | + | tig0019280:39719-39738 | None:intergenic | 40.0% |
| ! | GACCTTGCATTTTCTATTGG+GGG | + | tig0019280:39723-39742 | None:intergenic | 40.0% |
| ! | GGACCTTGCATTTTCTATTG+GGG | + | tig0019280:39724-39743 | None:intergenic | 40.0% |
| ! | GAGGACCTTGCATTTTCTAT+TGG | + | tig0019280:39726-39745 | None:intergenic | 40.0% |
| !! | CTTGCTTCTGAAACACATAG+TGG | + | tig0019280:39875-39894 | None:intergenic | 40.0% |
| TGCTGGAATGCTGTGATATT+TGG | + | tig0019280:40107-40126 | None:intergenic | 40.0% | |
| GCAGTAGAGAATATTACTGC+TGG | + | tig0019280:40124-40143 | None:intergenic | 40.0% | |
| GCAGTAATATTCTCTACTGC+AGG | - | tig0019280:40124-40143 | Msa1372520:intron | 40.0% | |
| TGAATTGCATTGCTTCCCTA+AGG | - | tig0019280:40330-40349 | Msa1372520:intron | 40.0% | |
| TAAGGCCAATGATCACCTTA+GGG | + | tig0019280:40348-40367 | None:intergenic | 40.0% | |
| TTAAGGCCAATGATCACCTT+AGG | + | tig0019280:40349-40368 | None:intergenic | 40.0% | |
| !! | AGGTGATCATTGGCCTTAAA+AGG | - | tig0019280:40350-40369 | Msa1372520:intron | 40.0% |
| AGCAAAAATGGCTAAAGGGT+TGG | - | tig0019280:40570-40589 | Msa1372520:intron | 40.0% | |
| GCAAAAATGGCTAAAGGGTT+GGG | - | tig0019280:40571-40590 | Msa1372520:intron | 40.0% | |
| TAATTGTTATGGAAGCAGGG+AGG | - | tig0019280:40602-40621 | Msa1372520:CDS | 40.0% | |
| GATGTACTAATGGGAGTTCA+TGG | - | tig0019280:40661-40680 | Msa1372520:intron | 40.0% | |
| ! | TTCATCCAAGTTGTGCCTTT+TGG | - | tig0019280:40727-40746 | Msa1372520:intron | 40.0% |
| TCAAGGGCTTTCTGTAATGT+TGG | + | tig0019280:40988-41007 | None:intergenic | 40.0% | |
| GAGCAGAAAAAGCTGGGATA+TGG | - | tig0019280:38309-38328 | Msa1372520:CDS | 45.0% | |
| ! | TTGATGGTCAATGACACCAG+TGG | - | tig0019280:38664-38683 | Msa1372520:CDS | 45.0% |
| !!! | GGCTATTTTTAGAGAGCCAC+TGG | + | tig0019280:38683-38702 | None:intergenic | 45.0% |
| !! | GAGATTCTTGTGGCATTGAC+AGG | + | tig0019280:39316-39335 | None:intergenic | 45.0% |
| GTTCAGATCAGCTCTACTTG+TGG | - | tig0019280:39387-39406 | Msa1372520:CDS | 45.0% | |
| CAGATAGGCAGAGTACACAA+AGG | - | tig0019280:39473-39492 | Msa1372520:intron | 45.0% | |
| TAGGCAGAGTACACAAAGGA+TGG | - | tig0019280:39477-39496 | Msa1372520:intron | 45.0% | |
| ! | TCTTACCTTCGGCTTTTGGT+GGG | + | tig0019280:39605-39624 | None:intergenic | 45.0% |
| ! | ATCTTACCTTCGGCTTTTGG+TGG | + | tig0019280:39606-39625 | None:intergenic | 45.0% |
| ! | CTTGCATTTTCTATTGGGGG+AGG | + | tig0019280:39720-39739 | None:intergenic | 45.0% |
| CTCCCCCAATAGAAAATGCA+AGG | - | tig0019280:39718-39737 | Msa1372520:intron | 45.0% | |
| ACAGAATACTGCCAAACCCA+AGG | - | tig0019280:39896-39915 | Msa1372520:intron | 45.0% | |
| TGACACAATGTAAACGGAGG+AGG | + | tig0019280:39945-39964 | None:intergenic | 45.0% | |
| GTGTGACACAATGTAAACGG+AGG | + | tig0019280:39948-39967 | None:intergenic | 45.0% | |
| GTCACACAAAACAAACAGCC+TGG | - | tig0019280:39961-39980 | Msa1372520:CDS | 45.0% | |
| GCATCACTCTTTCGAGCATA+AGG | + | tig0019280:40013-40032 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCACTGTGAGACT+TGG | + | tig0019280:40090-40109 | None:intergenic | 45.0% |
| TTCTCTACTGCAGGATACAC+TGG | - | tig0019280:40133-40152 | Msa1372520:intron | 45.0% | |
| TGCTTCCCTAAGGTGATCAT+TGG | - | tig0019280:40340-40359 | Msa1372520:intron | 45.0% | |
| ! | ATCCAAGTTGTGCCTTTTGG+TGG | - | tig0019280:40730-40749 | Msa1372520:intron | 45.0% |
| ! | TTCCACCAAAAGGCACAACT+TGG | + | tig0019280:40735-40754 | None:intergenic | 45.0% |
| TCCACTTGCATTCCACCAAA+AGG | + | tig0019280:40745-40764 | None:intergenic | 45.0% | |
| TTGGTGGAATGCAAGTGGAA+TGG | - | tig0019280:40746-40765 | Msa1372520:intron | 45.0% | |
| GGGCCTTGCAAAATCATTTG+TGG | + | tig0019280:40776-40795 | None:intergenic | 45.0% | |
| AACAAGGATGGGAAGCCTTT+AGG | - | tig0019280:40911-40930 | Msa1372520:CDS | 45.0% | |
| !!! | TTAACTTTTTTTTTTAATTA+TGG | + | tig0019280:39447-39466 | None:intergenic | 5.0% |
| ! | CTGGGATATGGAGCATTCGT+TGG | - | tig0019280:38321-38340 | Msa1372520:CDS | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+TGG | + | tig0019280:39250-39269 | None:intergenic | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+CGG | + | tig0019280:39250-39269 | None:intergenic | 50.0% |
| ! | CTTACCTTCGGCTTTTGGTG+GGG | + | tig0019280:39604-39623 | None:intergenic | 50.0% |
| GCCAAACCCAAGGAGATATC+CGG | - | tig0019280:39906-39925 | Msa1372520:intron | 50.0% | |
| CCAAACCCAAGGAGATATCC+GGG | - | tig0019280:39907-39926 | Msa1372520:intron | 50.0% | |
| ATGCACCCGGATATCTCCTT+GGG | + | tig0019280:39915-39934 | None:intergenic | 50.0% | |
| ! | AGGAGGATTTTCCATGCACC+CGG | + | tig0019280:39928-39947 | None:intergenic | 50.0% |
| ! | TCCATGACACGTTTTCAGCC+AGG | + | tig0019280:39982-40001 | None:intergenic | 50.0% |
| CTAATGGGAGTTCATGGTGC+AGG | - | tig0019280:40667-40686 | Msa1372520:intron | 50.0% | |
| ! | GCCTTTTGGTGGAATGCAAG+TGG | - | tig0019280:40741-40760 | Msa1372520:intron | 50.0% |
| ! | TGATTTTGCAAGGCCCTCAG+AGG | - | tig0019280:40780-40799 | Msa1372520:intron | 50.0% |
| ATCTCCCCACCAAAAGCCGA+AGG | - | tig0019280:39597-39616 | Msa1372520:intron | 55.0% | |
| TTCTATTGGGGGAGGGCAGA+TGG | + | tig0019280:39712-39731 | None:intergenic | 55.0% | |
| CCCGGATATCTCCTTGGGTT+TGG | + | tig0019280:39910-39929 | None:intergenic | 55.0% | |
| CATGCACCCGGATATCTCCT+TGG | + | tig0019280:39916-39935 | None:intergenic | 55.0% | |
| CAAGGAGATATCCGGGTGCA+TGG | - | tig0019280:39914-39933 | Msa1372520:intron | 55.0% | |
| GCCTGGCTGAAAACGTGTCA+TGG | - | tig0019280:39978-39997 | Msa1372520:CDS | 55.0% | |
| !! | CACTGTGAGACTTGGTGGCT+AGG | + | tig0019280:40082-40101 | None:intergenic | 55.0% |
| TGGTGCACTGTGAGACTTGG+TGG | + | tig0019280:40087-40106 | None:intergenic | 55.0% | |
| CTGGAGAGAATCAGGAGCCT+AGG | + | tig0019280:40514-40533 | None:intergenic | 55.0% | |
| TGGAAGCAGGGAGGAACATG+AGG | - | tig0019280:40611-40630 | Msa1372520:CDS | 55.0% | |
| ! | GGCTTTTGGTGGGGAGATGC+TGG | + | tig0019280:39595-39614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019280 | gene | 38267 | 41023 | 38267 | ID=Msa1372520;Name=Msa1372520 |
| tig0019280 | mRNA | 38267 | 41023 | 38267 | ID=Msa1372520-mRNA-1;Parent=Msa1372520;Name=Msa1372520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.33|1|1|1|6|0|549 |
| tig0019280 | exon | 40885 | 41023 | 40885 | ID=Msa1372520-mRNA-1:exon:2818;Parent=Msa1372520-mRNA-1 |
| tig0019280 | exon | 40584 | 40664 | 40584 | ID=Msa1372520-mRNA-1:exon:2817;Parent=Msa1372520-mRNA-1 |
| tig0019280 | exon | 40137 | 40193 | 40137 | ID=Msa1372520-mRNA-1:exon:2816;Parent=Msa1372520-mRNA-1 |
| tig0019280 | exon | 39938 | 40057 | 39938 | ID=Msa1372520-mRNA-1:exon:2815;Parent=Msa1372520-mRNA-1 |
| tig0019280 | exon | 39672 | 39734 | 39672 | ID=Msa1372520-mRNA-1:exon:2814;Parent=Msa1372520-mRNA-1 |
| tig0019280 | exon | 38267 | 39456 | 38267 | ID=Msa1372520-mRNA-1:exon:2813;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 40885 | 41023 | 40885 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 40584 | 40664 | 40584 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 40137 | 40193 | 40137 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 39938 | 40057 | 39938 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 39672 | 39734 | 39672 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| tig0019280 | CDS | 38267 | 39456 | 38267 | ID=Msa1372520-mRNA-1:cds;Parent=Msa1372520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
