Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930180 | XP_003631055.2 | 93.134 | 568 | 20 | 3 | 1 | 549 | 1 | 568 | 0.0 | 1076 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930180 | sp|Q10I20|XAT3_ORYSJ | 45.758 | 389 | 194 | 9 | 166 | 548 | 198 | 575 | 3.59e-115 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206370 | Msa0930180 | 0.809359 | 1.967899e-50 | -8.615850e-47 |
| Msa0386540 | Msa0930180 | 0.804352 | 2.250992e-49 | -8.615850e-47 |
| Msa0336430 | Msa0930180 | 0.805056 | 1.604563e-49 | -8.615850e-47 |
| Msa0336460 | Msa0930180 | 0.803632 | 3.177635e-49 | -8.615850e-47 |
| Msa0575420 | Msa0930180 | 0.886106 | 4.563816e-72 | -8.615850e-47 |
| Msa0930180 | Msa1296860 | 0.824953 | 6.105047e-54 | -8.615850e-47 |
| Msa0930180 | Msa1372520 | 0.979457 | 5.197953e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930180 | MtrunA17_Chr8g0392591 | 94.718 | 549 | 6 | 2 | 1 | 549 | 1 | 526 | 0.0 | 1062 |
| Msa0930180 | MtrunA17_Chr5g0398231 | 83.761 | 351 | 15 | 3 | 155 | 503 | 12 | 322 | 0.0 | 587 |
| Msa0930180 | MtrunA17_Chr7g0257291 | 34.895 | 427 | 220 | 8 | 171 | 545 | 106 | 526 | 1.35e-80 | 262 |
| Msa0930180 | MtrunA17_Chr5g0418331 | 37.209 | 344 | 196 | 11 | 211 | 545 | 31 | 363 | 2.90e-69 | 227 |
| Msa0930180 | MtrunA17_Chr5g0418341 | 36.416 | 346 | 197 | 11 | 211 | 545 | 65 | 398 | 6.16e-68 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930180 | AT3G18170.2 | 44.092 | 567 | 260 | 12 | 1 | 547 | 6 | 535 | 4.51e-160 | 467 |
| Msa0930180 | AT3G18170.1 | 51.026 | 390 | 176 | 5 | 166 | 547 | 2 | 384 | 2.30e-141 | 414 |
| Msa0930180 | AT3G18180.1 | 48.905 | 411 | 192 | 8 | 141 | 548 | 71 | 466 | 1.79e-138 | 409 |
| Msa0930180 | AT3G10320.1 | 34.571 | 431 | 259 | 8 | 128 | 543 | 66 | 488 | 2.61e-83 | 268 |
| Msa0930180 | AT2G41640.3 | 36.364 | 385 | 226 | 9 | 174 | 546 | 14 | 391 | 1.96e-82 | 263 |
| Msa0930180 | AT2G41640.1 | 36.364 | 385 | 226 | 9 | 174 | 546 | 107 | 484 | 7.95e-81 | 262 |
| Msa0930180 | AT2G41640.2 | 36.772 | 378 | 220 | 9 | 174 | 539 | 107 | 477 | 7.29e-80 | 259 |
| Msa0930180 | AT3G57380.1 | 35.806 | 391 | 228 | 8 | 173 | 546 | 102 | 486 | 2.28e-79 | 258 |
| Msa0930180 | AT3G57380.2 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 1.34e-78 | 253 |
| Msa0930180 | AT3G57380.3 | 36.031 | 383 | 222 | 8 | 181 | 546 | 2 | 378 | 1.34e-78 | 253 |
| Msa0930180 | AT2G03370.2 | 31.296 | 409 | 241 | 16 | 158 | 543 | 51 | 442 | 1.94e-59 | 204 |
| Msa0930180 | AT2G03370.1 | 31.296 | 409 | 241 | 16 | 158 | 543 | 49 | 440 | 2.33e-59 | 204 |
| Msa0930180 | AT2G03360.2 | 30.807 | 409 | 249 | 14 | 155 | 543 | 49 | 443 | 1.42e-58 | 202 |
| Msa0930180 | AT2G03360.1 | 30.807 | 409 | 249 | 14 | 155 | 543 | 45 | 439 | 1.51e-58 | 201 |
Find 95 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTGTAGACAATTTAA+TGG | 0.234810 | 6_2:+79025250 | Msa0930180:CDS |
| TGCTGGAATGCTGTGATATT+TGG | 0.250735 | 6_2:-79025155 | None:intergenic |
| TTCATCCAAGTTGTGCCTTT+TGG | 0.253333 | 6_2:+79025778 | Msa0930180:CDS |
| ATGATCTTACCTTCGGCTTT+TGG | 0.269229 | 6_2:-79024657 | None:intergenic |
| CCTATTCTATCAAAGACTTC+AGG | 0.290299 | 6_2:+79025461 | Msa0930180:CDS |
| AGGTGATCATTGGCCTTAAA+AGG | 0.292223 | 6_2:+79025401 | Msa0930180:CDS |
| ATGTAAGGCTTGATGTTAAT+AGG | 0.294844 | 6_2:+79026007 | Msa0930180:CDS |
| GCAATCAAAATTAGAGATAT+TGG | 0.305071 | 6_2:+79025523 | Msa0930180:CDS |
| GTGGCATTGACAGGGTTCTT+TGG | 0.305873 | 6_2:-79024298 | None:intergenic |
| AATACTTGGAATATAAAATA+AGG | 0.316625 | 6_2:+79025866 | Msa0930180:CDS |
| TTTATAATCATATTGTCTAA+TGG | 0.326079 | 6_2:-79025919 | None:intergenic |
| GTCATTGACCATCAACAATT+TGG | 0.335573 | 6_2:-79023708 | None:intergenic |
| AAAACGTGTCATGGATTATA+AGG | 0.339004 | 6_2:+79025038 | Msa0930180:CDS |
| TTTAAGAAATGCTTGGTGTT+TGG | 0.347169 | 6_2:-79025317 | None:intergenic |
| CTTGAGTTATTGCATCAATA+AGG | 0.348987 | 6_2:+79026054 | Msa0930180:CDS |
| TTGCACATTTAAACCTTACT+TGG | 0.349676 | 6_2:+79023420 | Msa0930180:CDS |
| CTCATAACGACTAAAGCTTT+TGG | 0.352882 | 6_2:-79023341 | None:intergenic |
| AACAAGGATGGGAAGCCTTT+AGG | 0.356870 | 6_2:+79025962 | Msa0930180:CDS |
| TTAAGGCCAATGATCACCTT+AGG | 0.372315 | 6_2:-79025397 | None:intergenic |
| AAACTCTTGTGATGTACTAA+TGG | 0.373358 | 6_2:+79025702 | Msa0930180:CDS |
| GCATCACTCTTTCGAGCATA+AGG | 0.378376 | 6_2:-79025061 | None:intergenic |
| CCCGGATATCTCCTTGGGTT+TGG | 0.380512 | 6_2:-79024958 | None:intergenic |
| ATTAGACAATATGATTATAA+AGG | 0.393436 | 6_2:+79025921 | Msa0930180:CDS |
| TTATTACCTTTAGCCATTTG+TGG | 0.398154 | 6_2:-79024388 | None:intergenic |
| GATATTCTTGTGGCATTGAC+AGG | 0.402195 | 6_2:-79024307 | None:intergenic |
| GAGATTCTTGTGGCATTGAC+AGG | 0.403672 | 6_2:-79024364 | None:intergenic |
| CATGCACCCGGATATCTCCT+TGG | 0.403742 | 6_2:-79024964 | None:intergenic |
| TGTCACTGAATTCATGGAAA+TGG | 0.404556 | 6_2:-79025210 | None:intergenic |
| AGAGTAATTGTTATGGAAGC+AGG | 0.405546 | 6_2:+79025649 | Msa0930180:CDS |
| TGACAATGTCACTGAATTCA+TGG | 0.407771 | 6_2:-79025216 | None:intergenic |
| ATGCACCCGGATATCTCCTT+GGG | 0.421105 | 6_2:-79024963 | None:intergenic |
| CTATTCTATCAAAGACTTCA+GGG | 0.422298 | 6_2:+79025462 | Msa0930180:CDS |
| CGTTGACACCAAATTGTTGA+TGG | 0.427312 | 6_2:+79023700 | Msa0930180:CDS |
| ATGTACTCACAATCATATAT+AGG | 0.428118 | 6_2:-79023445 | None:intergenic |
| TGCTTCCCTAAGGTGATCAT+TGG | 0.434274 | 6_2:+79025391 | Msa0930180:CDS |
| CCTGAAGTCTTTGATAGAAT+AGG | 0.436083 | 6_2:-79025461 | None:intergenic |
| GTCAAAATACACTGACCTAA+AGG | 0.444673 | 6_2:-79025977 | None:intergenic |
| GCCAAACCCAAGGAGATATC+CGG | 0.449399 | 6_2:+79024957 | Msa0930180:CDS |
| GTGAACATCAAGCTCTCAAT+TGG | 0.449684 | 6_2:+79023677 | Msa0930180:intron |
| CAATGAGTAGTGTAACAAAA+TGG | 0.461073 | 6_2:+79025089 | Msa0930180:CDS |
| GGGTTTCAGAGTAATTGTTA+TGG | 0.461461 | 6_2:+79025642 | Msa0930180:CDS |
| TGGTGCACTGTGAGACTTGG+TGG | 0.463102 | 6_2:-79025135 | None:intergenic |
| GTGGCATTGACAGGGTTCTT+CGG | 0.465091 | 6_2:-79024355 | None:intergenic |
| CACTGTGAGACTTGGTGGCT+AGG | 0.470879 | 6_2:-79025130 | None:intergenic |
| CTTGGAATATAAAATAAGGT+TGG | 0.474476 | 6_2:+79025870 | Msa0930180:CDS |
| CACAAGAATCTCTCCACAAA+TGG | 0.484320 | 6_2:+79024375 | Msa0930180:CDS |
| GGATATGAACATAAAATACT+TGG | 0.485648 | 6_2:+79025852 | Msa0930180:CDS |
| CTGGAGAGAATCAGGAGCCT+AGG | 0.487042 | 6_2:-79025562 | None:intergenic |
| TCCACTTGCATTCCACCAAA+AGG | 0.487171 | 6_2:-79025793 | None:intergenic |
| TTCTCTACTGCAGGATACAC+TGG | 0.490671 | 6_2:+79025184 | Msa0930180:CDS |
| ATCTCTCCACAAATGGCTAA+AGG | 0.495003 | 6_2:+79024382 | Msa0930180:CDS |
| GCAGTAGAGAATATTACTGC+TGG | 0.498916 | 6_2:-79025172 | None:intergenic |
| TAAGGCCAATGATCACCTTA+GGG | 0.500135 | 6_2:-79025396 | None:intergenic |
| TTCCACCAAAAGGCACAACT+TGG | 0.501284 | 6_2:-79025783 | None:intergenic |
| GATGTACTAATGGGAGTTCA+TGG | 0.502973 | 6_2:+79025712 | Msa0930180:CDS |
| AACTCTTGTGATGTACTAAT+GGG | 0.504329 | 6_2:+79025703 | Msa0930180:CDS |
| GGGCCTTGCAAAATCATTTG+TGG | 0.505794 | 6_2:-79025824 | None:intergenic |
| AGTTCTCTACATATTATTGA+AGG | 0.511289 | 6_2:+79024183 | Msa0930180:CDS |
| TCAAGGGCTTTCTGTAATGT+TGG | 0.512220 | 6_2:-79026036 | None:intergenic |
| GTAATCAAAGTAAGAAGCCT+AGG | 0.519633 | 6_2:+79025545 | Msa0930180:CDS |
| CTTGCTTCTGAAACACATAG+TGG | 0.520045 | 6_2:-79024923 | None:intergenic |
| CTGGGATATGGAGCATTCGT+TGG | 0.522124 | 6_2:+79023373 | Msa0930180:CDS |
| GCAGTAATATTCTCTACTGC+AGG | 0.528045 | 6_2:+79025175 | Msa0930180:CDS |
| CTTATTGATGCAATAACTCA+AGG | 0.528098 | 6_2:-79026053 | None:intergenic |
| TCATAACTGATAAGAAGTCT+TGG | 0.529455 | 6_2:+79025287 | Msa0930180:CDS |
| ATTTGGTGCACTGTGAGACT+TGG | 0.529586 | 6_2:-79025138 | None:intergenic |
| TTTATGTTCATATCCTCTGA+GGG | 0.533023 | 6_2:-79025844 | None:intergenic |
| TTTGTGTGACACAATGTAAA+CGG | 0.540817 | 6_2:-79024999 | None:intergenic |
| GCCTGGCTGAAAACGTGTCA+TGG | 0.547588 | 6_2:+79025029 | Msa0930180:CDS |
| CAAGGAGATATCCGGGTGCA+TGG | 0.548034 | 6_2:+79024965 | Msa0930180:CDS |
| TGCACATTTAAACCTTACTT+GGG | 0.549478 | 6_2:+79023421 | Msa0930180:CDS |
| CTAATGGGAGTTCATGGTGC+AGG | 0.551094 | 6_2:+79025718 | Msa0930180:CDS |
| TCATATATAGGACCCAAGTA+AGG | 0.567103 | 6_2:-79023433 | None:intergenic |
| CCAAACCCAAGGAGATATCC+GGG | 0.575035 | 6_2:+79024958 | Msa0930180:CDS |
| GAGTAATTGTTATGGAAGCA+GGG | 0.577494 | 6_2:+79025650 | Msa0930180:CDS |
| ATAGAATAGGAATACTTCTG+TGG | 0.579492 | 6_2:-79025448 | None:intergenic |
| TATTTGATTTGTATTAGTGA+AGG | 0.583692 | 6_2:-79025599 | None:intergenic |
| TTGGTGGAATGCAAGTGGAA+TGG | 0.588217 | 6_2:+79025797 | Msa0930180:CDS |
| TAACTGATAAGAAGTCTTGG+TGG | 0.588531 | 6_2:+79025290 | Msa0930180:CDS |
| AGATTCTTGTGGCATTGACA+GGG | 0.594768 | 6_2:-79024363 | None:intergenic |
| GTCACACAAAACAAACAGCC+TGG | 0.595084 | 6_2:+79025012 | Msa0930180:CDS |
| TTATTGATGCAATAACTCAA+GGG | 0.596947 | 6_2:-79026052 | None:intergenic |
| TGAATTGCATTGCTTCCCTA+AGG | 0.604124 | 6_2:+79025381 | Msa0930180:CDS |
| TAGAATAGGAATACTTCTGT+GGG | 0.608037 | 6_2:-79025447 | None:intergenic |
| ATATTCTTGTGGCATTGACA+GGG | 0.610566 | 6_2:-79024306 | None:intergenic |
| TGGAAGCAGGGAGGAACATG+AGG | 0.613361 | 6_2:+79025662 | Msa0930180:CDS |
| TGACACAATGTAAACGGAGG+AGG | 0.614714 | 6_2:-79024993 | None:intergenic |
| ATCTCCCCACCAAAAGCCGA+AGG | 0.627349 | 6_2:+79024648 | Msa0930180:CDS |
| ACAGAATACTGCCAAACCCA+AGG | 0.631748 | 6_2:+79024947 | Msa0930180:CDS |
| CATTTGTGGAGAGATTCTTG+TGG | 0.666849 | 6_2:-79024374 | None:intergenic |
| TGACAAATGAGATATTCTTG+TGG | 0.673967 | 6_2:-79024317 | None:intergenic |
| GAAATACTTGTTGAAGACAA+CGG | 0.689628 | 6_2:+79024159 | Msa0930180:CDS |
| GTGTGACACAATGTAAACGG+AGG | 0.710783 | 6_2:-79024996 | None:intergenic |
| TAATTGTTATGGAAGCAGGG+AGG | 0.766919 | 6_2:+79025653 | Msa0930180:CDS |
| TTGATGGTCAATGACACCAG+TGG | 0.770879 | 6_2:+79023716 | Msa0930180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAATAGTAGTAA+GGG | + | chr6_2:79024412-79024431 | Msa0930180:intron | 10.0% |
| !! | TATATTAATGAAAAACAACA+TGG | - | chr6_2:79023558-79023577 | None:intergenic | 15.0% |
| !!! | TTTTCATTAATATAGTTCTT+TGG | + | chr6_2:79023564-79023583 | Msa0930180:intron | 15.0% |
| !! | TTTGTGTTTATAAGTTATAT+CGG | + | chr6_2:79023874-79023893 | Msa0930180:intron | 15.0% |
| !! | CAAATTAATTAATAGTAGTA+AGG | + | chr6_2:79024411-79024430 | Msa0930180:intron | 15.0% |
| !! | TTTAATTATGGAAATTAAGT+TGG | - | chr6_2:79024486-79024505 | None:intergenic | 15.0% |
| !! | TTAAATATCCTTTATATACA+AGG | + | chr6_2:79024839-79024858 | Msa0930180:intron | 15.0% |
| !! | AATACTTGGAATATAAAATA+AGG | + | chr6_2:79025866-79025885 | Msa0930180:CDS | 15.0% |
| !! | TTTATAATCATATTGTCTAA+TGG | - | chr6_2:79025922-79025941 | None:intergenic | 15.0% |
| !! | ATTAGACAATATGATTATAA+AGG | + | chr6_2:79025921-79025940 | Msa0930180:CDS | 15.0% |
| !! | TTTACTGAAATTCAGAATAT+GGG | - | chr6_2:79024020-79024039 | None:intergenic | 20.0% |
| !!! | AGATTTTTTGAATCTCTATA+TGG | + | chr6_2:79024208-79024227 | Msa0930180:intron | 20.0% |
| !! | ATCTCTATATGGTTAATAAA+AGG | + | chr6_2:79024219-79024238 | Msa0930180:intron | 20.0% |
| !! | ATGGTTAATAAAAGGATTTA+AGG | + | chr6_2:79024227-79024246 | Msa0930180:intron | 20.0% |
| !! | AAAAGTTAAAAACAACAGAT+AGG | + | chr6_2:79024509-79024528 | Msa0930180:intron | 20.0% |
| !! | CAATGTTACTAATCAATAAA+TGG | - | chr6_2:79024738-79024757 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGTATTAGTGA+AGG | - | chr6_2:79025602-79025621 | None:intergenic | 20.0% |
| !! | TACAAATCAAATAGCAAAAA+TGG | + | chr6_2:79025609-79025628 | Msa0930180:CDS | 20.0% |
| !!! | ATTTTGACAAACAAAATGTA+AGG | + | chr6_2:79025992-79026011 | Msa0930180:CDS | 20.0% |
| ! | ATGTACTCACAATCATATAT+AGG | - | chr6_2:79023448-79023467 | None:intergenic | 25.0% |
| ! | AGAAGTAAAGATATACTCAA+AGG | - | chr6_2:79023650-79023669 | None:intergenic | 25.0% |
| ! | TGAACTGTTTATCCAAAAAA+AGG | - | chr6_2:79023787-79023806 | None:intergenic | 25.0% |
| ! | CTTTACTGAAATTCAGAATA+TGG | - | chr6_2:79024021-79024040 | None:intergenic | 25.0% |
| ! | AGTTCTCTACATATTATTGA+AGG | + | chr6_2:79024183-79024202 | Msa0930180:CDS | 25.0% |
| ! | AATTAATTTCAATCTGACTG+AGG | - | chr6_2:79024796-79024815 | None:intergenic | 25.0% |
| !!! | TTGACTTGTAGACAATTTAA+TGG | + | chr6_2:79025250-79025269 | Msa0930180:CDS | 25.0% |
| !!! | ACAGTTTTTTAAGAAATGCT+TGG | - | chr6_2:79025327-79025346 | None:intergenic | 25.0% |
| ! | GCAATCAAAATTAGAGATAT+TGG | + | chr6_2:79025523-79025542 | Msa0930180:CDS | 25.0% |
| ! | AAATAGCAAAAATGGCTAAA+GGG | + | chr6_2:79025617-79025636 | Msa0930180:CDS | 25.0% |
| ! | GGATATGAACATAAAATACT+TGG | + | chr6_2:79025852-79025871 | Msa0930180:CDS | 25.0% |
| ! | CTTGGAATATAAAATAAGGT+TGG | + | chr6_2:79025870-79025889 | Msa0930180:CDS | 25.0% |
| ! | ATCAATTGAAAAACAAGGAT+GGG | + | chr6_2:79025951-79025970 | Msa0930180:CDS | 25.0% |
| ! | TTATTGATGCAATAACTCAA+GGG | - | chr6_2:79026055-79026074 | None:intergenic | 25.0% |
| TTGCACATTTAAACCTTACT+TGG | + | chr6_2:79023420-79023439 | Msa0930180:CDS | 30.0% | |
| TGCACATTTAAACCTTACTT+GGG | + | chr6_2:79023421-79023440 | Msa0930180:CDS | 30.0% | |
| GCATTATATGTGGAAATAAG+TGG | - | chr6_2:79023511-79023530 | None:intergenic | 30.0% | |
| ACTTAGACATGCATTATATG+TGG | - | chr6_2:79023521-79023540 | None:intergenic | 30.0% | |
| ACTCATTTCACAAAAGAAAG+TGG | - | chr6_2:79023612-79023631 | None:intergenic | 30.0% | |
| GTCTTATCTATTCTTACCTT+TGG | - | chr6_2:79023756-79023775 | None:intergenic | 30.0% | |
| !!! | AGACATATAGCTCCTTTTTT+TGG | + | chr6_2:79023772-79023791 | Msa0930180:intron | 30.0% |
| GATAAACAGTTCAATCTAAG+TGG | + | chr6_2:79023794-79023813 | Msa0930180:intron | 30.0% | |
| ATATGCTATCTATGCAACAA+AGG | + | chr6_2:79023823-79023842 | Msa0930180:intron | 30.0% | |
| TAACTCATGTCAGATTCATT+TGG | - | chr6_2:79024094-79024113 | None:intergenic | 30.0% | |
| ! | GAAATACTTGTTGAAGACAA+CGG | + | chr6_2:79024159-79024178 | Msa0930180:CDS | 30.0% |
| GTGAGATATTCATAGGTTAA+AGG | - | chr6_2:79024257-79024276 | None:intergenic | 30.0% | |
| TGACAAATGAGATATTCTTG+TGG | - | chr6_2:79024320-79024339 | None:intergenic | 30.0% | |
| TTATTACCTTTAGCCATTTG+TGG | - | chr6_2:79024391-79024410 | None:intergenic | 30.0% | |
| !! | TATGGAAATTAAGTTGGTTG+AGG | - | chr6_2:79024480-79024499 | None:intergenic | 30.0% |
| CACAAAGGATGGTAATTATA+AGG | + | chr6_2:79024539-79024558 | Msa0930180:intron | 30.0% | |
| ! | TGATGAAGCCTTGTATATAA+AGG | - | chr6_2:79024850-79024869 | None:intergenic | 30.0% |
| TTTGTGTGACACAATGTAAA+CGG | - | chr6_2:79025002-79025021 | None:intergenic | 30.0% | |
| ! | AAAACGTGTCATGGATTATA+AGG | + | chr6_2:79025038-79025057 | Msa0930180:CDS | 30.0% |
| CAATGAGTAGTGTAACAAAA+TGG | + | chr6_2:79025089-79025108 | Msa0930180:CDS | 30.0% | |
| TCATAACTGATAAGAAGTCT+TGG | + | chr6_2:79025287-79025306 | Msa0930180:CDS | 30.0% | |
| !! | TTTAAGAAATGCTTGGTGTT+TGG | - | chr6_2:79025320-79025339 | None:intergenic | 30.0% |
| ! | GCTCTTTATGATACCTTTTA+AGG | - | chr6_2:79025417-79025436 | None:intergenic | 30.0% |
| TAGAATAGGAATACTTCTGT+GGG | - | chr6_2:79025450-79025469 | None:intergenic | 30.0% | |
| ATAGAATAGGAATACTTCTG+TGG | - | chr6_2:79025451-79025470 | None:intergenic | 30.0% | |
| CTATTCTATCAAAGACTTCA+GGG | + | chr6_2:79025462-79025481 | Msa0930180:CDS | 30.0% | |
| CAAATAGCAAAAATGGCTAA+AGG | + | chr6_2:79025616-79025635 | Msa0930180:CDS | 30.0% | |
| AAACTCTTGTGATGTACTAA+TGG | + | chr6_2:79025702-79025721 | Msa0930180:CDS | 30.0% | |
| AACTCTTGTGATGTACTAAT+GGG | + | chr6_2:79025703-79025722 | Msa0930180:CDS | 30.0% | |
| !! | TGAAAATTGCATTTTGAGGA+AGG | - | chr6_2:79025762-79025781 | None:intergenic | 30.0% |
| ! | TGGATGAAAATTGCATTTTG+AGG | - | chr6_2:79025766-79025785 | None:intergenic | 30.0% |
| TTTATGTTCATATCCTCTGA+GGG | - | chr6_2:79025847-79025866 | None:intergenic | 30.0% | |
| ! | TTTTATGTTCATATCCTCTG+AGG | - | chr6_2:79025848-79025867 | None:intergenic | 30.0% |
| !!! | CCTTGTTTTTCAATTGATGA+GGG | - | chr6_2:79025949-79025968 | None:intergenic | 30.0% |
| !!! | TCCTTGTTTTTCAATTGATG+AGG | - | chr6_2:79025950-79025969 | None:intergenic | 30.0% |
| CATCAATTGAAAAACAAGGA+TGG | + | chr6_2:79025950-79025969 | Msa0930180:CDS | 30.0% | |
| ATGTAAGGCTTGATGTTAAT+AGG | + | chr6_2:79026007-79026026 | Msa0930180:CDS | 30.0% | |
| ! | CTCATAACGACTAAAGCTTT+TGG | - | chr6_2:79023344-79023363 | None:intergenic | 35.0% |
| TCATATATAGGACCCAAGTA+AGG | - | chr6_2:79023436-79023455 | None:intergenic | 35.0% | |
| AGCGGTTAATTACATTACAG+AGG | - | chr6_2:79023480-79023499 | None:intergenic | 35.0% | |
| AAATAAGTGGCTAATGCAAG+CGG | - | chr6_2:79023498-79023517 | None:intergenic | 35.0% | |
| GTCATTGACCATCAACAATT+TGG | - | chr6_2:79023711-79023730 | None:intergenic | 35.0% | |
| GAGAGCTTAAAGAAATAAGC+TGG | + | chr6_2:79023896-79023915 | Msa0930180:intron | 35.0% | |
| TTCAGCTACAATGTCTTCAA+TGG | - | chr6_2:79024142-79024161 | None:intergenic | 35.0% | |
| CTGACAAGTGAGATATTCAT+AGG | - | chr6_2:79024264-79024283 | None:intergenic | 35.0% | |
| !! | ATATTCTTGTGGCATTGACA+GGG | - | chr6_2:79024309-79024328 | None:intergenic | 35.0% |
| GATGGTAATTATAAGGACTG+TGG | + | chr6_2:79024546-79024565 | Msa0930180:intron | 35.0% | |
| CTAGCAAATGATCTTACCTT+CGG | - | chr6_2:79024667-79024686 | None:intergenic | 35.0% | |
| ! | AGGACCTTGCATTTTCTATT+GGG | - | chr6_2:79024776-79024795 | None:intergenic | 35.0% |
| TGTCACTGAATTCATGGAAA+TGG | - | chr6_2:79025213-79025232 | None:intergenic | 35.0% | |
| TGACAATGTCACTGAATTCA+TGG | - | chr6_2:79025219-79025238 | None:intergenic | 35.0% | |
| TGTCTACAAGTCAAAAACAG+TGG | - | chr6_2:79025244-79025263 | None:intergenic | 35.0% | |
| TAACTGATAAGAAGTCTTGG+TGG | + | chr6_2:79025290-79025309 | Msa0930180:CDS | 35.0% | |
| CCTGAAGTCTTTGATAGAAT+AGG | - | chr6_2:79025464-79025483 | None:intergenic | 35.0% | |
| CCTATTCTATCAAAGACTTC+AGG | + | chr6_2:79025461-79025480 | Msa0930180:CDS | 35.0% | |
| GTAATCAAAGTAAGAAGCCT+AGG | + | chr6_2:79025545-79025564 | Msa0930180:CDS | 35.0% | |
| !! | ATGTTTTTCTGGAGAGAATC+AGG | - | chr6_2:79025573-79025592 | None:intergenic | 35.0% |
| ! | GAAGGATCTTGATGTTTTTC+TGG | - | chr6_2:79025584-79025603 | None:intergenic | 35.0% |
| GGGTTTCAGAGTAATTGTTA+TGG | + | chr6_2:79025642-79025661 | Msa0930180:CDS | 35.0% | |
| AGAGTAATTGTTATGGAAGC+AGG | + | chr6_2:79025649-79025668 | Msa0930180:CDS | 35.0% | |
| GAGTAATTGTTATGGAAGCA+GGG | + | chr6_2:79025650-79025669 | Msa0930180:CDS | 35.0% | |
| ! | TTGCCACAAATGATTTTGCA+AGG | + | chr6_2:79025821-79025840 | Msa0930180:CDS | 35.0% |
| CCCTCATCAATTGAAAAACA+AGG | + | chr6_2:79025946-79025965 | Msa0930180:CDS | 35.0% | |
| GTCAAAATACACTGACCTAA+AGG | - | chr6_2:79025980-79025999 | None:intergenic | 35.0% | |
| TCGTTATGAGCAGAAAAAGC+TGG | + | chr6_2:79023354-79023373 | Msa0930180:CDS | 40.0% | |
| CGTTATGAGCAGAAAAAGCT+GGG | + | chr6_2:79023355-79023374 | Msa0930180:CDS | 40.0% | |
| GTGAACATCAAGCTCTCAAT+TGG | + | chr6_2:79023677-79023696 | Msa0930180:intron | 40.0% | |
| CGTTGACACCAAATTGTTGA+TGG | + | chr6_2:79023700-79023719 | Msa0930180:CDS | 40.0% | |
| ! | GGCTCTCTAAAAATAGCCAA+AGG | + | chr6_2:79023737-79023756 | Msa0930180:CDS | 40.0% |
| ! | AGCACTTGTGAGACTGTTTT+GGG | - | chr6_2:79023957-79023976 | None:intergenic | 40.0% |
| ! | AAGCACTTGTGAGACTGTTT+TGG | - | chr6_2:79023958-79023977 | None:intergenic | 40.0% |
| !! | GATATTCTTGTGGCATTGAC+AGG | - | chr6_2:79024310-79024329 | None:intergenic | 40.0% |
| !! | AGATTCTTGTGGCATTGACA+GGG | - | chr6_2:79024366-79024385 | None:intergenic | 40.0% |
| CATTTGTGGAGAGATTCTTG+TGG | - | chr6_2:79024377-79024396 | None:intergenic | 40.0% | |
| CACAAGAATCTCTCCACAAA+TGG | + | chr6_2:79024375-79024394 | Msa0930180:CDS | 40.0% | |
| ATCTCTCCACAAATGGCTAA+AGG | + | chr6_2:79024382-79024401 | Msa0930180:CDS | 40.0% | |
| ! | ATGATCTTACCTTCGGCTTT+TGG | - | chr6_2:79024660-79024679 | None:intergenic | 40.0% |
| AGTCTGATGTCTCAGTAAGT+TGG | + | chr6_2:79024685-79024704 | Msa0930180:intron | 40.0% | |
| GTCTGATGTCTCAGTAAGTT+GGG | + | chr6_2:79024686-79024705 | Msa0930180:intron | 40.0% | |
| ! | TTGCATTTTCTATTGGGGGA+GGG | - | chr6_2:79024770-79024789 | None:intergenic | 40.0% |
| ! | GACCTTGCATTTTCTATTGG+GGG | - | chr6_2:79024774-79024793 | None:intergenic | 40.0% |
| ! | GGACCTTGCATTTTCTATTG+GGG | - | chr6_2:79024775-79024794 | None:intergenic | 40.0% |
| ! | GAGGACCTTGCATTTTCTAT+TGG | - | chr6_2:79024777-79024796 | None:intergenic | 40.0% |
| !! | CTTGCTTCTGAAACACATAG+TGG | - | chr6_2:79024926-79024945 | None:intergenic | 40.0% |
| TGCTGGAATGCTGTGATATT+TGG | - | chr6_2:79025158-79025177 | None:intergenic | 40.0% | |
| GCAGTAGAGAATATTACTGC+TGG | - | chr6_2:79025175-79025194 | None:intergenic | 40.0% | |
| GCAGTAATATTCTCTACTGC+AGG | + | chr6_2:79025175-79025194 | Msa0930180:CDS | 40.0% | |
| TGAATTGCATTGCTTCCCTA+AGG | + | chr6_2:79025381-79025400 | Msa0930180:CDS | 40.0% | |
| TAAGGCCAATGATCACCTTA+GGG | - | chr6_2:79025399-79025418 | None:intergenic | 40.0% | |
| TTAAGGCCAATGATCACCTT+AGG | - | chr6_2:79025400-79025419 | None:intergenic | 40.0% | |
| !! | AGGTGATCATTGGCCTTAAA+AGG | + | chr6_2:79025401-79025420 | Msa0930180:CDS | 40.0% |
| AGCAAAAATGGCTAAAGGGT+TGG | + | chr6_2:79025621-79025640 | Msa0930180:CDS | 40.0% | |
| GCAAAAATGGCTAAAGGGTT+GGG | + | chr6_2:79025622-79025641 | Msa0930180:CDS | 40.0% | |
| TAATTGTTATGGAAGCAGGG+AGG | + | chr6_2:79025653-79025672 | Msa0930180:CDS | 40.0% | |
| GATGTACTAATGGGAGTTCA+TGG | + | chr6_2:79025712-79025731 | Msa0930180:CDS | 40.0% | |
| ! | TTCATCCAAGTTGTGCCTTT+TGG | + | chr6_2:79025778-79025797 | Msa0930180:CDS | 40.0% |
| TCAAGGGCTTTCTGTAATGT+TGG | - | chr6_2:79026039-79026058 | None:intergenic | 40.0% | |
| GAGCAGAAAAAGCTGGGATA+TGG | + | chr6_2:79023361-79023380 | Msa0930180:CDS | 45.0% | |
| ! | TTGATGGTCAATGACACCAG+TGG | + | chr6_2:79023716-79023735 | Msa0930180:CDS | 45.0% |
| !!! | GGCTATTTTTAGAGAGCCAC+TGG | - | chr6_2:79023735-79023754 | None:intergenic | 45.0% |
| !! | GAGATTCTTGTGGCATTGAC+AGG | - | chr6_2:79024367-79024386 | None:intergenic | 45.0% |
| GTTCAGATCAGCTCTACTTG+TGG | + | chr6_2:79024438-79024457 | Msa0930180:intron | 45.0% | |
| CAGATAGGCAGAGTACACAA+AGG | + | chr6_2:79024524-79024543 | Msa0930180:intron | 45.0% | |
| TAGGCAGAGTACACAAAGGA+TGG | + | chr6_2:79024528-79024547 | Msa0930180:intron | 45.0% | |
| ! | TCTTACCTTCGGCTTTTGGT+GGG | - | chr6_2:79024656-79024675 | None:intergenic | 45.0% |
| ! | ATCTTACCTTCGGCTTTTGG+TGG | - | chr6_2:79024657-79024676 | None:intergenic | 45.0% |
| ! | CTTGCATTTTCTATTGGGGG+AGG | - | chr6_2:79024771-79024790 | None:intergenic | 45.0% |
| CTCCCCCAATAGAAAATGCA+AGG | + | chr6_2:79024769-79024788 | Msa0930180:intron | 45.0% | |
| ACAGAATACTGCCAAACCCA+AGG | + | chr6_2:79024947-79024966 | Msa0930180:CDS | 45.0% | |
| TGACACAATGTAAACGGAGG+AGG | - | chr6_2:79024996-79025015 | None:intergenic | 45.0% | |
| GTGTGACACAATGTAAACGG+AGG | - | chr6_2:79024999-79025018 | None:intergenic | 45.0% | |
| GTCACACAAAACAAACAGCC+TGG | + | chr6_2:79025012-79025031 | Msa0930180:CDS | 45.0% | |
| GCATCACTCTTTCGAGCATA+AGG | - | chr6_2:79025064-79025083 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCACTGTGAGACT+TGG | - | chr6_2:79025141-79025160 | None:intergenic | 45.0% |
| TTCTCTACTGCAGGATACAC+TGG | + | chr6_2:79025184-79025203 | Msa0930180:CDS | 45.0% | |
| TGCTTCCCTAAGGTGATCAT+TGG | + | chr6_2:79025391-79025410 | Msa0930180:CDS | 45.0% | |
| ! | ATCCAAGTTGTGCCTTTTGG+TGG | + | chr6_2:79025781-79025800 | Msa0930180:CDS | 45.0% |
| ! | TTCCACCAAAAGGCACAACT+TGG | - | chr6_2:79025786-79025805 | None:intergenic | 45.0% |
| TCCACTTGCATTCCACCAAA+AGG | - | chr6_2:79025796-79025815 | None:intergenic | 45.0% | |
| TTGGTGGAATGCAAGTGGAA+TGG | + | chr6_2:79025797-79025816 | Msa0930180:CDS | 45.0% | |
| GGGCCTTGCAAAATCATTTG+TGG | - | chr6_2:79025827-79025846 | None:intergenic | 45.0% | |
| AACAAGGATGGGAAGCCTTT+AGG | + | chr6_2:79025962-79025981 | Msa0930180:CDS | 45.0% | |
| !!! | TTAACTTTTTTTTTTAATTA+TGG | - | chr6_2:79024498-79024517 | None:intergenic | 5.0% |
| ! | CTGGGATATGGAGCATTCGT+TGG | + | chr6_2:79023373-79023392 | Msa0930180:CDS | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+TGG | - | chr6_2:79024301-79024320 | None:intergenic | 50.0% |
| !! | GTGGCATTGACAGGGTTCTT+CGG | - | chr6_2:79024301-79024320 | None:intergenic | 50.0% |
| ! | CTTACCTTCGGCTTTTGGTG+GGG | - | chr6_2:79024655-79024674 | None:intergenic | 50.0% |
| GCCAAACCCAAGGAGATATC+CGG | + | chr6_2:79024957-79024976 | Msa0930180:CDS | 50.0% | |
| CCAAACCCAAGGAGATATCC+GGG | + | chr6_2:79024958-79024977 | Msa0930180:CDS | 50.0% | |
| ATGCACCCGGATATCTCCTT+GGG | - | chr6_2:79024966-79024985 | None:intergenic | 50.0% | |
| ! | AGGAGGATTTTCCATGCACC+CGG | - | chr6_2:79024979-79024998 | None:intergenic | 50.0% |
| ! | TCCATGACACGTTTTCAGCC+AGG | - | chr6_2:79025033-79025052 | None:intergenic | 50.0% |
| CTAATGGGAGTTCATGGTGC+AGG | + | chr6_2:79025718-79025737 | Msa0930180:CDS | 50.0% | |
| ! | GCCTTTTGGTGGAATGCAAG+TGG | + | chr6_2:79025792-79025811 | Msa0930180:CDS | 50.0% |
| ! | TGATTTTGCAAGGCCCTCAG+AGG | + | chr6_2:79025831-79025850 | Msa0930180:CDS | 50.0% |
| ATCTCCCCACCAAAAGCCGA+AGG | + | chr6_2:79024648-79024667 | Msa0930180:CDS | 55.0% | |
| TTCTATTGGGGGAGGGCAGA+TGG | - | chr6_2:79024763-79024782 | None:intergenic | 55.0% | |
| CCCGGATATCTCCTTGGGTT+TGG | - | chr6_2:79024961-79024980 | None:intergenic | 55.0% | |
| CATGCACCCGGATATCTCCT+TGG | - | chr6_2:79024967-79024986 | None:intergenic | 55.0% | |
| CAAGGAGATATCCGGGTGCA+TGG | + | chr6_2:79024965-79024984 | Msa0930180:CDS | 55.0% | |
| GCCTGGCTGAAAACGTGTCA+TGG | + | chr6_2:79025029-79025048 | Msa0930180:CDS | 55.0% | |
| !! | CACTGTGAGACTTGGTGGCT+AGG | - | chr6_2:79025133-79025152 | None:intergenic | 55.0% |
| TGGTGCACTGTGAGACTTGG+TGG | - | chr6_2:79025138-79025157 | None:intergenic | 55.0% | |
| CTGGAGAGAATCAGGAGCCT+AGG | - | chr6_2:79025565-79025584 | None:intergenic | 55.0% | |
| TGGAAGCAGGGAGGAACATG+AGG | + | chr6_2:79025662-79025681 | Msa0930180:CDS | 55.0% | |
| ! | GGCTTTTGGTGGGGAGATGC+TGG | - | chr6_2:79024646-79024665 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 79023319 | 79026074 | 79023319 | ID=Msa0930180;Name=Msa0930180 |
| chr6_2 | mRNA | 79023319 | 79026074 | 79023319 | ID=Msa0930180-mRNA-1;Parent=Msa0930180;Name=Msa0930180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.33|1|1|1|6|0|549 |
| chr6_2 | exon | 79023319 | 79023457 | 79023319 | ID=Msa0930180-mRNA-1:exon:13470;Parent=Msa0930180-mRNA-1 |
| chr6_2 | exon | 79023678 | 79023758 | 79023678 | ID=Msa0930180-mRNA-1:exon:13471;Parent=Msa0930180-mRNA-1 |
| chr6_2 | exon | 79024148 | 79024204 | 79024148 | ID=Msa0930180-mRNA-1:exon:13472;Parent=Msa0930180-mRNA-1 |
| chr6_2 | exon | 79024284 | 79024403 | 79024284 | ID=Msa0930180-mRNA-1:exon:13473;Parent=Msa0930180-mRNA-1 |
| chr6_2 | exon | 79024607 | 79024669 | 79024607 | ID=Msa0930180-mRNA-1:exon:13474;Parent=Msa0930180-mRNA-1 |
| chr6_2 | exon | 79024885 | 79026074 | 79024885 | ID=Msa0930180-mRNA-1:exon:13475;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79023319 | 79023457 | 79023319 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79023678 | 79023758 | 79023678 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79024148 | 79024204 | 79024148 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79024284 | 79024403 | 79024284 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79024607 | 79024669 | 79024607 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| chr6_2 | CDS | 79024885 | 79026074 | 79024885 | ID=Msa0930180-mRNA-1:cds;Parent=Msa0930180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
