AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575550 MtrunA17_Chr8g0392731 98.036 611 12 0 1 611 1 611 0.0 1224
Msa0575550 MtrunA17_Chr1g0208291 72.803 603 164 0 6 608 4 606 0.0 927
Msa0575550 MtrunA17_Chr1g0172501 25.581 301 201 9 61 357 274 555 9.32e-14 74.3
Msa0575550 MtrunA17_Chr3g0093681 25.249 301 202 9 61 357 274 555 3.97e-13 72.4
Msa0575550 MtrunA17_Chr1g0176241 37.273 110 61 3 158 264 337 441 1.09e-12 70.5
Msa0575550 MtrunA17_Chr3g0095501 24.302 358 216 13 179 531 259 566 1.09e-11 67.8
Msa0575550 MtrunA17_Chr5g0401671 23.237 241 162 8 53 284 341 567 3.60e-11 66.2
Msa0575550 MtrunA17_Chr1g0185501 22.989 348 211 13 179 520 16 312 6.35e-11 63.9
Msa0575550 MtrunA17_Chr4g0070791 27.854 219 133 8 66 265 109 321 8.67e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575550 AT3G18060.1 74.836 608 152 1 4 610 1 608 0.0 955
Msa0575550 AT2G01330.1 67.323 609 195 4 5 610 3 610 0.0 863
Msa0575550 AT5G52820.1 22.738 431 281 13 148 564 80 472 5.43e-13 72.0
Msa0575550 AT2G43770.1 26.174 298 199 10 58 348 52 335 8.15e-12 67.4
Msa0575550 AT5G67320.1 23.967 242 161 8 52 284 358 585 1.97e-11 67.4
Msa0575550 AT4G02730.1 24.138 348 203 12 51 392 35 327 5.48e-11 64.7

Find 186 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCACTTAGGTGGGGTTTA+TGG 0.082114 4_1:-79437226 Msa0575550:CDS
AAGGAGTTTCGTGTTCTTTC+TGG 0.122384 4_1:-79443236 Msa0575550:CDS
CTGCACATATATTCTATTTC+TGG 0.164431 4_1:-79437874 Msa0575550:CDS
ACCTAAGTGAGCACCCTTTA+TGG 0.179066 4_1:+79437237 None:intergenic
AATCCCTGATGTTCTCATTT+TGG 0.185647 4_1:-79436731 Msa0575550:three_prime_UTR
CTCACTTAGGTGGGGTTTAT+GGG 0.206529 4_1:-79437225 Msa0575550:CDS
AACCGTTAGTTCTGACAAAA+AGG 0.227495 4_1:-79440603 Msa0575550:CDS
GTTCTAGTTTCAATTGATTC+AGG 0.254254 4_1:-79438015 Msa0575550:CDS
GCAATGGATAGGTGGGATTC+TGG 0.264908 4_1:-79442579 Msa0575550:intron
GTAGCAATCCTACTGCTATC+AGG 0.285417 4_1:+79437322 None:intergenic
CTGACAAGTCTGCAAAAGTA+TGG 0.313171 4_1:-79439315 Msa0575550:CDS
CCCCTTCATGTCTCCGTCTA+TGG 0.323756 4_1:-79443377 Msa0575550:CDS
ACCATCCTGACCACCAATAA+TGG 0.326504 4_1:+79437900 None:intergenic
TGTCAGGTACCGTGAGGATC+TGG 0.337070 4_1:-79443286 Msa0575550:CDS
GTTGTGTCAATCATTAATCT+TGG 0.338589 4_1:-79437967 Msa0575550:CDS
GTAGGTGATGGTGTTGGATT+TGG 0.348835 4_1:+79443439 None:intergenic
ATTCACTGATGAATATAGTT+TGG 0.351324 4_1:-79437197 Msa0575550:CDS
GAAAATCGAGCGACGGTGGC+AGG 0.372098 4_1:+79443341 None:intergenic
CAGCATAAATACTGCCAGTA+TGG 0.381490 4_1:+79440522 None:intergenic
ATCAAGTTGTAAAGGGAAAG+TGG 0.385370 4_1:-79437119 Msa0575550:three_prime_UTR
GGCTAATAGAAATACCATAA+AGG 0.390095 4_1:-79437251 Msa0575550:CDS
GAAACATCCCCTCTCTAACT+TGG 0.396563 4_1:+79437011 None:intergenic
AGGAGTTTCGTGTTCTTTCT+GGG 0.399988 4_1:-79443235 Msa0575550:CDS
TATCTTGTCACTGTTTCTCT+TGG 0.401428 4_1:-79439190 Msa0575550:CDS
TTGATTCCCTGTAATGTACT+TGG 0.404674 4_1:+79436767 None:intergenic
GTTACTTCTGAGAATGGTTA+AGG 0.405078 4_1:+79439087 None:intergenic
CTTGTCACTGTTTCTCTTGG+TGG 0.406048 4_1:-79439187 Msa0575550:CDS
GAAGAAGAGATTGTTATGTC+TGG 0.410474 4_1:-79438944 Msa0575550:CDS
AAAACCAAAATGAGAACATC+AGG 0.412648 4_1:+79436727 None:intergenic
TCTTCTGAAGGTGGCCATAC+TGG 0.414349 4_1:-79440536 Msa0575550:CDS
ATTGAAACTAGAACAAGTTC+AGG 0.414746 4_1:+79438024 None:intergenic
GCTAATAGAAATACCATAAA+GGG 0.416716 4_1:-79437250 Msa0575550:CDS
TAATCGAGAAGCTGTTGTTT+GGG 0.419514 4_1:-79437752 Msa0575550:CDS
GCGACTTGCAAGCTTCTGTT+TGG 0.420696 4_1:-79436926 Msa0575550:three_prime_UTR
TTAATCGAGAAGCTGTTGTT+TGG 0.423105 4_1:-79437753 Msa0575550:CDS
ACATTGATTTGTTCTGCCTC+TGG 0.424474 4_1:-79439256 Msa0575550:CDS
ACAATGCGAAAAGGCCTTGT+AGG 0.425304 4_1:+79442498 None:intergenic
GATGCTGAAGCCATTGATAT+CGG 0.426975 4_1:-79438084 Msa0575550:CDS
TTTCAAAATGTAGACTACTA+TGG 0.427064 4_1:-79436844 Msa0575550:three_prime_UTR
CTCCTGTCTTGTAGTTATGA+TGG 0.428145 4_1:-79439055 Msa0575550:CDS
GACAATTTATCCGTGCAGTA+TGG 0.435214 4_1:+79437356 None:intergenic
CAATGGATAGGTGGGATTCT+GGG 0.435336 4_1:-79442578 Msa0575550:intron
CTCTTCTTCTGCAGCTGCTA+AGG 0.435458 4_1:+79438958 None:intergenic
CTACAAGACAGGAGCACTCT+AGG 0.437677 4_1:+79439064 None:intergenic
GATGAGCTCGGTGGAGTTGA+CGG 0.438057 4_1:-79443522 Msa0575550:CDS
CGAGATTGCTTAAATCTAAA+GGG 0.439758 4_1:+79442432 None:intergenic
GGTATCAGAATTGTCGCTTC+TGG 0.440339 4_1:-79443182 Msa0575550:CDS
CACGGATAAATTGTCTTGCT+TGG 0.442191 4_1:-79437348 Msa0575550:CDS
TGAAGCCATTATTGGTGGTC+AGG 0.444420 4_1:-79437905 Msa0575550:CDS
TACAAACAGTTATATCAATC+TGG 0.445143 4_1:+79436702 None:intergenic
CCTTTACAACTTGATCTTCA+CGG 0.445771 4_1:+79437127 None:intergenic
AGTGCAACACTAAAATCCTT+TGG 0.445789 4_1:+79438054 None:intergenic
GTTACAAATTTACTGCCATC+TGG 0.447597 4_1:+79440623 None:intergenic
GATGGAAGTGAAGCCATTAT+TGG 0.448281 4_1:-79437913 Msa0575550:CDS
TATGTCCTGAAAACGATGTC+GGG 0.452600 4_1:+79439125 None:intergenic
TTAATAGTTAAGTGGATTCA+AGG 0.455728 4_1:-79439031 Msa0575550:CDS
TTGTCACTGTTTCTCTTGGT+GGG 0.456402 4_1:-79439186 Msa0575550:CDS
AAACATCCCCTCTCTAACTT+GGG 0.457062 4_1:+79437012 None:intergenic
GCGAGATTGCTTAAATCTAA+AGG 0.459551 4_1:+79442431 None:intergenic
ACTGTTTGTAGCTAGCTGAT+TGG 0.460174 4_1:-79436689 Msa0575550:three_prime_UTR
CTATTGATTGTGCCATATGA+AGG 0.461671 4_1:-79436897 Msa0575550:three_prime_UTR
GTTAAGTGGATTCAAGGGAT+TGG 0.468346 4_1:-79439025 Msa0575550:CDS
GTCAGGTACCGTGAGGATCT+GGG 0.468616 4_1:-79443285 Msa0575550:CDS
CGTGAAGATCAAGTTGTAAA+GGG 0.468706 4_1:-79437126 Msa0575550:exon
GAATATAGTTTGGTTAGCTC+AGG 0.471315 4_1:-79437187 Msa0575550:CDS
ACTAATGTTGGTGAATTTGA+TGG 0.472283 4_1:-79442555 Msa0575550:CDS
CGCCATAGACGGAGACATGA+AGG 0.472952 4_1:+79443375 None:intergenic
TAATCTTGGATTTACTGTTA+CGG 0.474705 4_1:-79437953 Msa0575550:CDS
CCACGGCCACGTTCTGTTGA+AGG 0.475561 4_1:+79443482 None:intergenic
ATAAGGCGGGTTTCTTTACA+TGG 0.476069 4_1:-79438120 Msa0575550:CDS
GCATCTGTTGTCTCGTCTGA+TGG 0.480001 4_1:-79437931 Msa0575550:CDS
GCAGTATTTATGCTGTTAGC+TGG 0.481308 4_1:-79440514 Msa0575550:CDS
ATCATATTCGATGGAAAGAC+TGG 0.482024 4_1:-79440578 Msa0575550:CDS
GACATATCTGAGGATAATAG+TGG 0.491671 4_1:-79439292 Msa0575550:CDS
TTGATTTGTTCTGCCTCTGG+TGG 0.491775 4_1:-79439253 Msa0575550:CDS
GGAGTTGAAGACATGCTTGT+AGG 0.493315 4_1:-79439232 Msa0575550:CDS
ATTCATCATGATAACCGATC+TGG 0.494504 4_1:+79443409 None:intergenic
CCGTGAAGATCAAGTTGTAA+AGG 0.495196 4_1:-79437127 Msa0575550:exon
AGACTGTCCTTGAGAAACAT+AGG 0.495310 4_1:-79437834 Msa0575550:CDS
GTTGCATCTGCTGACGTGTC+AGG 0.496526 4_1:-79443302 Msa0575550:CDS
GCCATTATTGGTGGTCAGGA+TGG 0.505715 4_1:-79437901 Msa0575550:CDS
TCTAGGGTTACTTCTGAGAA+TGG 0.505822 4_1:+79439081 None:intergenic
ATGATGGCTTAATAGTTAAG+TGG 0.506182 4_1:-79439039 Msa0575550:CDS
GATGCAACCCATTCACCGTT+GGG 0.506443 4_1:+79443317 None:intergenic
ACGTTCTGTTGAAGGCGTGC+AGG 0.508737 4_1:+79443490 None:intergenic
CTTGGTCCCCTGATAGCAGT+AGG 0.509910 4_1:-79437330 Msa0575550:CDS
TAGCAATCCTACTGCTATCA+GGG 0.510406 4_1:+79437323 None:intergenic
ATGGTATTTCTATTAGCCAC+AGG 0.512733 4_1:+79437256 None:intergenic
CATGATAACCGATCTGGCAT+TGG 0.515012 4_1:+79443415 None:intergenic
CCACAGGTGACAATGCGAAA+AGG 0.517474 4_1:+79442489 None:intergenic
TCAAGTTGTAAAGGGAAAGT+GGG 0.517637 4_1:-79437118 Msa0575550:three_prime_UTR
GGCCGTGGTATTCTCATCTC+CGG 0.518010 4_1:-79443467 Msa0575550:CDS
GTCGCTTCTGGTGAAGCTAA+AGG 0.520427 4_1:-79443170 Msa0575550:CDS
TGGTTGACTTCCGATATCAA+TGG 0.521473 4_1:+79438074 None:intergenic
TAGCAGTAAATTACAAAGGA+AGG 0.521654 4_1:-79438999 Msa0575550:CDS
GACTGTCCTTGAGAAACATA+GGG 0.523830 4_1:-79437833 Msa0575550:CDS
TCTCTCTTTCAAGATGAGCT+CGG 0.527575 4_1:-79443534 Msa0575550:exon
TAAAGGGTGCTCACTTAGGT+GGG 0.536033 4_1:-79437234 Msa0575550:CDS
TTCTGTCAACTAGATAAGGC+GGG 0.537021 4_1:-79438133 Msa0575550:intron
AGATGCAACCCATTCACCGT+TGG 0.537671 4_1:+79443316 None:intergenic
GAGTTGAAGACATGCTTGTA+GGG 0.539058 4_1:-79439231 Msa0575550:CDS
GCGACAATTCTGATACCATC+AGG 0.539289 4_1:+79443188 None:intergenic
AAAAGTCAAAACTGATGAAG+AGG 0.539438 4_1:-79437049 Msa0575550:three_prime_UTR
GATAGCAGTAGGATTGCTAC+AGG 0.543234 4_1:-79437319 Msa0575550:CDS
TACAAGACAGGAGCACTCTA+GGG 0.546231 4_1:+79439065 None:intergenic
TACTCACATCTCGGGAGGCA+CGG 0.546800 4_1:+79437728 None:intergenic
GCTGTTAGCTGGAGTCCTGA+TGG 0.548585 4_1:-79440503 Msa0575550:CDS
AGTACTAGTACTCACATCTC+GGG 0.551436 4_1:+79437720 None:intergenic
AGCCATCATAACTACAAGAC+AGG 0.557501 4_1:+79439053 None:intergenic
GTAAGCATGTTCGCCATAGA+CGG 0.558880 4_1:+79443364 None:intergenic
CACCTACACCAATGCCAGAT+CGG 0.562580 4_1:-79443423 Msa0575550:CDS
ACCATAAAGGGTGCTCACTT+AGG 0.564151 4_1:-79437238 Msa0575550:CDS
ATTGGTGTAGGTGATGGTGT+TGG 0.567354 4_1:+79443433 None:intergenic
ATAAAGGGTGCTCACTTAGG+TGG 0.568101 4_1:-79437235 Msa0575550:CDS
GGTGTTGGATTTGGAGTCGC+CGG 0.568267 4_1:+79443448 None:intergenic
TGGGATTCTGGGACTAATGT+TGG 0.568712 4_1:-79442567 Msa0575550:CDS
TCGCATTGTCACCTGTGGAG+AGG 0.571600 4_1:-79442484 Msa0575550:CDS
TAATAGTTAAGTGGATTCAA+GGG 0.572072 4_1:-79439030 Msa0575550:CDS
ATATGTCCTGAAAACGATGT+CGG 0.572109 4_1:+79439124 None:intergenic
CCTTCAACAGAACGTGGCCG+TGG 0.572710 4_1:-79443482 Msa0575550:CDS
CAAGATAATCGTTCAACCAC+AGG 0.574023 4_1:+79439206 None:intergenic
GACAAGAAAATCCTCTCCAC+AGG 0.576600 4_1:+79442473 None:intergenic
ATCGGTGAGTTATCTTCTGA+AGG 0.580609 4_1:-79440548 Msa0575550:CDS
AACTCAAAACTCGTCTTGAG+TGG 0.584201 4_1:+79442532 None:intergenic
CTTATCACCCCAAGTTAGAG+AGG 0.584499 4_1:-79437020 Msa0575550:three_prime_UTR
GATCTTCAGTGGTCTCCTGA+TGG 0.585210 4_1:-79443203 Msa0575550:CDS
TACAACTTGATCTTCACGGA+GGG 0.586215 4_1:+79437131 None:intergenic
ACATGCTTGTAGGGTGCCTG+TGG 0.597201 4_1:-79439222 Msa0575550:CDS
TGACAAGTCTGCAAAAGTAT+GGG 0.598045 4_1:-79439314 Msa0575550:CDS
GCCATAGACGGAGACATGAA+GGG 0.598923 4_1:+79443376 None:intergenic
AAAATCGAGCGACGGTGGCA+GGG 0.599251 4_1:+79443342 None:intergenic
GGAAAGACTGGAGAGAAGAT+CGG 0.599432 4_1:-79440566 Msa0575550:CDS
CTTCTGTCAACTAGATAAGG+CGG 0.601647 4_1:-79438134 Msa0575550:intron
AATGCAGTGCACGATGATGA+TGG 0.604966 4_1:+79443558 None:intergenic
ATCTGAGGATAATAGTGGGA+AGG 0.606291 4_1:-79439287 Msa0575550:CDS
CTCTTTCAAGATGAGCTCGG+TGG 0.606493 4_1:-79443531 Msa0575550:exon
TTGTTTGTTCATATATCACA+AGG 0.607911 4_1:-79436958 Msa0575550:three_prime_UTR
TATTTCTATTAGCCACAGGT+TGG 0.608800 4_1:+79437260 None:intergenic
AAAGGGTGCTCACTTAGGTG+GGG 0.609702 4_1:-79437233 Msa0575550:CDS
ACAACTTGATCTTCACGGAG+GGG 0.609851 4_1:+79437132 None:intergenic
TAGCACCCCTATGTTTCTCA+AGG 0.610582 4_1:+79437827 None:intergenic
AAGGCGGGTTTCTTTACATG+GGG 0.611641 4_1:-79438118 Msa0575550:CDS
AAAGTCAAAACTGATGAAGA+GGG 0.615257 4_1:-79437048 Msa0575550:three_prime_UTR
TCTGGCATTGGTGTAGGTGA+TGG 0.618379 4_1:+79443427 None:intergenic
TAAGGCGGGTTTCTTTACAT+GGG 0.618983 4_1:-79438119 Msa0575550:CDS
TGTGTGAGATATTCTCCAGA+TGG 0.622541 4_1:-79440638 Msa0575550:CDS
TAGTTTGGTTAGCTCAGGCG+AGG 0.625931 4_1:-79437182 Msa0575550:CDS
GGGTGAAAATCGAGCGACGG+TGG 0.626749 4_1:+79443337 None:intergenic
AACATCCCCTCTCTAACTTG+GGG 0.627088 4_1:+79437013 None:intergenic
TCAGGTACCGTGAGGATCTG+GGG 0.627630 4_1:-79443284 Msa0575550:CDS
TTAGATTTAAGCAATCTCGC+AGG 0.628883 4_1:-79442428 Msa0575550:intron
ACTTCTGAGAATGGTTAAGG+AGG 0.628997 4_1:+79439090 None:intergenic
GTTGTGCTTATAAACCTACA+AGG 0.629807 4_1:-79442512 Msa0575550:CDS
GATATAGCAGTAAATTACAA+AGG 0.633145 4_1:-79439003 Msa0575550:CDS
CCATAGACGGAGACATGAAG+GGG 0.633505 4_1:+79443377 None:intergenic
ACATATCTGAGGATAATAGT+GGG 0.634727 4_1:-79439291 Msa0575550:CDS
GGAGGATCGATGATCTTCAG+TGG 0.636836 4_1:-79443214 Msa0575550:CDS
ATACATAAAAGCGCGAACAA+AGG 0.644313 4_1:+79443142 None:intergenic
TTATCACCCCAAGTTAGAGA+GGG 0.646189 4_1:-79437019 Msa0575550:three_prime_UTR
TGATATCGGAAGTCAACCAA+AGG 0.651151 4_1:-79438070 Msa0575550:CDS
ATGTCCTGAAAACGATGTCG+GGG 0.652427 4_1:+79439126 None:intergenic
CATGTCTTCAACTCCACCAG+AGG 0.652652 4_1:+79439240 None:intergenic
GCGAGTTCCCCAGATCCTCA+CGG 0.657058 4_1:+79443277 None:intergenic
ACATGTTGTACCATACTGCA+CGG 0.658077 4_1:-79437366 Msa0575550:CDS
AAAAGTATGGGACATATCTG+AGG 0.658576 4_1:-79439302 Msa0575550:CDS
GGTGAGTTATCTTCTGAAGG+TGG 0.661525 4_1:-79440545 Msa0575550:CDS
GGAAGTGAAGCCATTATTGG+TGG 0.661612 4_1:-79437910 Msa0575550:CDS
AACCGATCTGGCATTGGTGT+AGG 0.664335 4_1:+79443421 None:intergenic
AGTTTCGTGTTCTTTCTGGG+AGG 0.677626 4_1:-79443232 Msa0575550:CDS
TGCACGCCTTCAACAGAACG+TGG 0.678162 4_1:-79443488 Msa0575550:CDS
TCTTTACATGGGGATCAGTG+CGG 0.680969 4_1:-79438108 Msa0575550:CDS
GTGCACGATGATGATGGTGA+TGG 0.685538 4_1:+79443564 None:intergenic
TATCACCCCAAGTTAGAGAG+GGG 0.694883 4_1:-79437018 Msa0575550:three_prime_UTR
AAACCAAAATGAGAACATCA+GGG 0.695207 4_1:+79436728 None:intergenic
ATATGAGATTGACCAACCTG+TGG 0.696248 4_1:-79437272 Msa0575550:CDS
TCAGGAGTTGTCATGCTGCG+TGG 0.701235 4_1:-79437997 Msa0575550:CDS
GTTGGGTGAAAATCGAGCGA+CGG 0.702331 4_1:+79443334 None:intergenic
GATTGCTTAAATCTAAAGGG+AGG 0.704673 4_1:+79442435 None:intergenic
ACTAGTACTCACATCTCGGG+AGG 0.705295 4_1:+79437723 None:intergenic
GAGGGGTTATCTTCCAGACA+CGG 0.708079 4_1:+79437149 None:intergenic
CTGACGTGTCAGGTACCGTG+AGG 0.722749 4_1:-79443292 Msa0575550:CDS
AGCAATCCTACTGCTATCAG+GGG 0.726822 4_1:+79437324 None:intergenic
ACTGTCCTTGAGAAACATAG+GGG 0.726823 4_1:-79437832 Msa0575550:CDS
CGCCGGAGATGAGAATACCA+CGG 0.738636 4_1:+79443465 None:intergenic
TTACAACTTGATCTTCACGG+AGG 0.742051 4_1:+79437130 None:intergenic
CATAGACGGAGACATGAAGG+GGG 0.769626 4_1:+79443378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTTAAAATTTCAAAT+AGG + chr4_1:79440239-79440258 None:intergenic 10.0%
!! CAAATGAAATTAATTATATT+GGG + chr4_1:79441793-79441812 None:intergenic 10.0%
!! TCAAATGAAATTAATTATAT+TGG + chr4_1:79441794-79441813 None:intergenic 10.0%
!!! AACTAAGTATAAATTTTATT+TGG - chr4_1:79443600-79443619 Msa0575550:five_prime_UTR 10.0%
!! TCACTTTACTATATATATAT+AGG - chr4_1:79437165-79437184 Msa0575550:CDS 15.0%
!! TTACTATATATATATAGGAT+AGG - chr4_1:79437170-79437189 Msa0575550:CDS 15.0%
!! TGAAAATATGTTAAAATAAG+TGG + chr4_1:79437350-79437369 None:intergenic 15.0%
!!! ATGTTATAAGTTGTTTTTAT+AGG - chr4_1:79437451-79437470 Msa0575550:intron 15.0%
!!! TAATTAGACACATATTTTTA+AGG + chr4_1:79438032-79438051 None:intergenic 15.0%
!!! GATAAAACATAAAAAGTATA+TGG + chr4_1:79438085-79438104 None:intergenic 15.0%
!!! TGGTTTTATAAATTATAGAT+AGG + chr4_1:79438408-79438427 None:intergenic 15.0%
!! AATTAAATTAACTAAGTTGT+TGG + chr4_1:79438459-79438478 None:intergenic 15.0%
!!! AAATTAATCAGTTAGTTTTA+TGG + chr4_1:79438777-79438796 None:intergenic 15.0%
!!! TGAGTATTTTTTATTGATTA+TGG - chr4_1:79439760-79439779 Msa0575550:intron 15.0%
!!! TTTTGCAATTAAAATGAAAA+AGG - chr4_1:79442688-79442707 Msa0575550:intron 15.0%
!! ATAATACTTTCGTTATTTAA+AGG + chr4_1:79442737-79442756 None:intergenic 15.0%
!!! AATTTATACTTAGTTTTGTT+TGG + chr4_1:79443595-79443614 None:intergenic 15.0%
!! AAGAAAAGAAAAGAAAAGAA+AGG + chr4_1:79437114-79437133 None:intergenic 20.0%
!!! ATGTTTGAGTGAATATTTTT+TGG - chr4_1:79437552-79437571 Msa0575550:intron 20.0%
!!! AAGACATTTTTCTTTATAGA+AGG + chr4_1:79438107-79438126 None:intergenic 20.0%
!!! TTGATGAATTTTCAAAACAT+TGG - chr4_1:79438129-79438148 Msa0575550:intron 20.0%
!!! TTGCAGATATTTTTAAAATG+TGG + chr4_1:79438256-79438275 None:intergenic 20.0%
!! GTGCAAATCTATATAAAATA+TGG - chr4_1:79438496-79438515 Msa0575550:intron 20.0%
!! GAGAAAAAAAAAATGAGAAT+TGG - chr4_1:79438557-79438576 Msa0575550:intron 20.0%
!! TAAATGAGAATATTGATCTT+TGG + chr4_1:79438583-79438602 None:intergenic 20.0%
!!! TTCTCATTTATTTTATAGCA+AGG - chr4_1:79438593-79438612 Msa0575550:intron 20.0%
!!! TTGCAGATATTTTTAAAATG+TGG + chr4_1:79438256-79438275 None:intergenic 20.0%
!! ACACTATCTTTAAACATAAA+GGG + chr4_1:79439431-79439450 None:intergenic 20.0%
!! TACACTATCTTTAAACATAA+AGG + chr4_1:79439432-79439451 None:intergenic 20.0%
!!! ACGATAATTTGTTTATGTAT+AGG - chr4_1:79439538-79439557 Msa0575550:intron 20.0%
!!! CGATAATTTGTTTATGTATA+GGG - chr4_1:79439539-79439558 Msa0575550:intron 20.0%
!!! TATTTTTTATTGATTATGGC+AGG - chr4_1:79439764-79439783 Msa0575550:intron 20.0%
!! ACTATAAACTAAGAAATATG+TGG - chr4_1:79439894-79439913 Msa0575550:intron 20.0%
!! AGAATAATAAATCTCATTCA+AGG - chr4_1:79440583-79440602 Msa0575550:CDS 20.0%
!! TTTGTTTATCCAAATCAAAT+TGG + chr4_1:79441390-79441409 None:intergenic 20.0%
!!! GATGAAATAAATCATTTTCT+CGG - chr4_1:79441455-79441474 Msa0575550:intron 20.0%
!! TGTTATCTATTGAAGTATAT+TGG - chr4_1:79441478-79441497 Msa0575550:intron 20.0%
!! ATTACTACTGCTTATTTAAT+GGG + chr4_1:79441550-79441569 None:intergenic 20.0%
!! AATTACTACTGCTTATTTAA+TGG + chr4_1:79441551-79441570 None:intergenic 20.0%
!! TTGCTAACTTATAATATCTT+GGG + chr4_1:79441896-79441915 None:intergenic 20.0%
!! ATTGCTAACTTATAATATCT+TGG + chr4_1:79441897-79441916 None:intergenic 20.0%
!! ATATTATAAGTTAGCAATTG+AGG - chr4_1:79441899-79441918 Msa0575550:intron 20.0%
!!! TTCATTTTAATTGCAAAACT+GGG + chr4_1:79442686-79442705 None:intergenic 20.0%
!!! TTTCATTTTAATTGCAAAAC+TGG + chr4_1:79442687-79442706 None:intergenic 20.0%
! CTTTCATTTACAACTAATCA+TGG - chr4_1:79437239-79437258 Msa0575550:CDS 25.0%
!! CATCTAGATAAACTATTTTC+AGG + chr4_1:79437434-79437453 None:intergenic 25.0%
! AAGCATCAAAATCAGATATA+GGG + chr4_1:79437523-79437542 None:intergenic 25.0%
!! AAAGCATCAAAATCAGATAT+AGG + chr4_1:79437524-79437543 None:intergenic 25.0%
! CTATATCGTATTTCTTTAGT+TGG - chr4_1:79437594-79437613 Msa0575550:intron 25.0%
!! TTTCTTGTCAACTTTTATGA+AGG - chr4_1:79437761-79437780 Msa0575550:CDS 25.0%
!!! ATATTTTTAAGGACATGCAA+GGG + chr4_1:79438021-79438040 None:intergenic 25.0%
!! ATGGCAATATGCAAAATTTT+GGG + chr4_1:79438066-79438085 None:intergenic 25.0%
!! TATGGCAATATGCAAAATTT+TGG + chr4_1:79438067-79438086 None:intergenic 25.0%
! TCGATATATTACAAAATCTG+TGG + chr4_1:79438539-79438558 None:intergenic 25.0%
! ACTTGAATCATACATAAAGT+TGG + chr4_1:79438619-79438638 None:intergenic 25.0%
!!! ATTTTTAGATTATGCTCACT+TGG + chr4_1:79438805-79438824 None:intergenic 25.0%
! TGATTTGAATGAATGATTCA+TGG + chr4_1:79438843-79438862 None:intergenic 25.0%
! CACACTTCAAAAATCAAAAT+TGG + chr4_1:79439016-79439035 None:intergenic 25.0%
!! TTTTTACTTTACTGATGACA+CGG + chr4_1:79439122-79439141 None:intergenic 25.0%
! GGAAATACAAAAATACTAAC+CGG - chr4_1:79439205-79439224 Msa0575550:CDS 25.0%
! TTTAAACATAAAGGGAAAAG+GGG + chr4_1:79439423-79439442 None:intergenic 25.0%
! CTTTAAACATAAAGGGAAAA+GGG + chr4_1:79439424-79439443 None:intergenic 25.0%
! TCTTTAAACATAAAGGGAAA+AGG + chr4_1:79439425-79439444 None:intergenic 25.0%
! ATTTATCAGACGAATGTAAT+AGG + chr4_1:79439508-79439527 None:intergenic 25.0%
! ATCAACATCATAGATTGAAA+AGG + chr4_1:79439838-79439857 None:intergenic 25.0%
! GAAATATGTGGTAAAGTAAA+AGG - chr4_1:79439906-79439925 Msa0575550:intron 25.0%
! TAGAAAAGTGAATATAAGTC+AGG + chr4_1:79440110-79440129 None:intergenic 25.0%
!!! TCATTTTAACTTGTAGGTTA+TGG - chr4_1:79440141-79440160 Msa0575550:intron 25.0%
!!! GAGAATTCTTCACTTTTTTT+GGG - chr4_1:79440392-79440411 Msa0575550:intron 25.0%
! ACTAAAACTCTCCAATATAT+GGG + chr4_1:79440556-79440575 None:intergenic 25.0%
! ATAATAAATCTCATTCAAGG+TGG - chr4_1:79440586-79440605 Msa0575550:CDS 25.0%
! TAATAAATCTCATTCAAGGT+GGG - chr4_1:79440587-79440606 Msa0575550:CDS 25.0%
!!! TTAGATTTTGTTTGAGAGTT+TGG + chr4_1:79440680-79440699 None:intergenic 25.0%
!! TTAATAGTTAAGTGGATTCA+AGG - chr4_1:79441189-79441208 Msa0575550:intron 25.0%
!! TAATAGTTAAGTGGATTCAA+GGG - chr4_1:79441190-79441209 Msa0575550:intron 25.0%
! GATATAGCAGTAAATTACAA+AGG - chr4_1:79441217-79441236 Msa0575550:intron 25.0%
!!! TATGTCTGGTTTTGATAATA+AGG - chr4_1:79441290-79441309 Msa0575550:intron 25.0%
!! ATTTAATTTCGATACTCTGT+TGG + chr4_1:79441662-79441681 None:intergenic 25.0%
!!! GTCACAACAATATTAGTTTT+TGG + chr4_1:79441758-79441777 None:intergenic 25.0%
! GAGAAATGTTTCGTATTAAT+TGG + chr4_1:79441817-79441836 None:intergenic 25.0%
! CGAAAATCGTTTATAACTAA+TGG - chr4_1:79442032-79442051 Msa0575550:intron 25.0%
! TAATCTTGGATTTACTGTTA+CGG - chr4_1:79442267-79442286 Msa0575550:intron 25.0%
!!! ATTTTTCAATGTTTGCATCA+GGG - chr4_1:79442440-79442459 Msa0575550:CDS 25.0%
! TATATGTTCTTGAACAAAAC+CGG + chr4_1:79442535-79442554 None:intergenic 25.0%
! TGCTTTCAAATATTACAAAC+AGG - chr4_1:79442640-79442659 Msa0575550:intron 25.0%
! TTTCATATATGTTATTGTGC+AGG - chr4_1:79442819-79442838 Msa0575550:intron 25.0%
! GCTAATAGAAATACCATAAA+GGG - chr4_1:79442970-79442989 Msa0575550:intron 25.0%
! ATTCACTGATGAATATAGTT+TGG - chr4_1:79443023-79443042 Msa0575550:intron 25.0%
! TTGTTTGTTCATATATCACA+AGG - chr4_1:79443262-79443281 Msa0575550:CDS 25.0%
! TTTCAAAATGTAGACTACTA+TGG - chr4_1:79443376-79443395 Msa0575550:CDS 25.0%
! ATGTACTTGGAAAAATTCTT+TGG + chr4_1:79443443-79443462 None:intergenic 25.0%
!! AATTTTTCCAAGTACATTAC+AGG - chr4_1:79443446-79443465 Msa0575550:CDS 25.0%
!! ATTTTTCCAAGTACATTACA+GGG - chr4_1:79443447-79443466 Msa0575550:CDS 25.0%
! TACAAACAGTTATATCAATC+TGG + chr4_1:79443521-79443540 None:intergenic 25.0%
!!! CAATGAATTCGTTTTGAAGA+AGG - chr4_1:79436965-79436984 Msa0575550:three_prime_UTR 30.0%
!! GTTGTTTTCATAAGTTATCC+TGG - chr4_1:79437391-79437410 Msa0575550:intron 30.0%
!!! GTTATTTTTATAAGCTGTCC+AGG + chr4_1:79437412-79437431 None:intergenic 30.0%
AATCAGATATAGGGAATGTT+TGG + chr4_1:79437514-79437533 None:intergenic 30.0%
! ACTAATGTTGGTGAATTTGA+TGG - chr4_1:79437665-79437684 Msa0575550:intron 30.0%
CGAGATTGCTTAAATCTAAA+GGG + chr4_1:79437791-79437810 None:intergenic 30.0%
GGAGAGAAACTTATATAAGT+CGG + chr4_1:79437944-79437963 None:intergenic 30.0%
!! CATATTTTTAAGGACATGCA+AGG + chr4_1:79438022-79438041 None:intergenic 30.0%
! CATTGGTTGTTTGAGTTTAT+TGG - chr4_1:79438146-79438165 Msa0575550:intron 30.0%
TGAATTATCATTAGACGTCA+GGG - chr4_1:79438280-79438299 Msa0575550:intron 30.0%
ACGATCTAGTAAAGAGAAAA+GGG + chr4_1:79438336-79438355 None:intergenic 30.0%
TAAAAATGTATATGACCGCA+CGG + chr4_1:79438363-79438382 None:intergenic 30.0%
!!! GATTTGCACATTTGTTTTGA+AGG + chr4_1:79438485-79438504 None:intergenic 30.0%
GGATCCTTCTTGTATAATTA+CGG - chr4_1:79438735-79438754 Msa0575550:intron 30.0%
TCATCCGTAATTATACAAGA+AGG + chr4_1:79438742-79438761 None:intergenic 30.0%
TGAATGATTCATGGATACTT+TGG + chr4_1:79438834-79438853 None:intergenic 30.0%
ATATGTGTATGTCTTGAACT+GGG + chr4_1:79438888-79438907 None:intergenic 30.0%
TATATGTGTATGTCTTGAAC+TGG + chr4_1:79438889-79438908 None:intergenic 30.0%
ATAACAAAAGACACACACAT+AGG - chr4_1:79438906-79438925 Msa0575550:intron 30.0%
!! TAGTGTGGTCTTTTGTTATA+TGG + chr4_1:79438944-79438963 None:intergenic 30.0%
!! ATAACATTGATAGTGTAGTG+TGG + chr4_1:79438959-79438978 None:intergenic 30.0%
! TTTTACTTTACTGATGACAC+GGG + chr4_1:79439121-79439140 None:intergenic 30.0%
! TTTGGAGTTGATTCTTTCAA+AGG + chr4_1:79439155-79439174 None:intergenic 30.0%
GCTAACTTATGATCGTTATT+TGG + chr4_1:79439173-79439192 None:intergenic 30.0%
TGCATCTATGATATTCTAAC+CGG + chr4_1:79439227-79439246 None:intergenic 30.0%
! CTTTTCATATTCCTCTGTTT+TGG - chr4_1:79439456-79439475 Msa0575550:intron 30.0%
ATAAGAACAAACCAAAACAG+AGG + chr4_1:79439470-79439489 None:intergenic 30.0%
!! AAAAAGGGTATCATATTCGA+TGG - chr4_1:79439633-79439652 Msa0575550:intron 30.0%
AGAGACAAATACGTGAAAAT+GGG + chr4_1:79439807-79439826 None:intergenic 30.0%
ATCATAGATTGAAAAGGAGA+TGG + chr4_1:79439832-79439851 None:intergenic 30.0%
! CACATTTTGAATGCAAACTA+TGG - chr4_1:79439978-79439997 Msa0575550:intron 30.0%
ATAGAAGTTATTCGAGCTAA+GGG - chr4_1:79440004-79440023 Msa0575550:intron 30.0%
!!! TTGCTCTCATTTTAACTTGT+AGG - chr4_1:79440135-79440154 Msa0575550:intron 30.0%
!! GTTATGGTTTGTTTGTTATC+TGG - chr4_1:79440157-79440176 Msa0575550:intron 30.0%
!!! TTGTTTGTTATCTGGTCTTT+TGG - chr4_1:79440165-79440184 Msa0575550:intron 30.0%
!!! TGTTTGTTATCTGGTCTTTT+GGG - chr4_1:79440166-79440185 Msa0575550:intron 30.0%
!! TGCTAGTTTACTGAGATTTT+TGG - chr4_1:79440301-79440320 Msa0575550:intron 30.0%
!!! GGAGAATTCTTCACTTTTTT+TGG - chr4_1:79440391-79440410 Msa0575550:intron 30.0%
!! TTTTGGGAGAATGTTTTTGA+AGG - chr4_1:79440408-79440427 Msa0575550:intron 30.0%
!! TTTGGGAGAATGTTTTTGAA+GGG - chr4_1:79440409-79440428 Msa0575550:intron 30.0%
GACTAAAACTCTCCAATATA+TGG + chr4_1:79440557-79440576 None:intergenic 30.0%
AATAAATCTCATTCAAGGTG+GGG - chr4_1:79440588-79440607 Msa0575550:CDS 30.0%
!! ATTTTGTTTGAGAGTTTGGA+GGG + chr4_1:79440676-79440695 None:intergenic 30.0%
AAATGACTAGTATAGCAAAG+GGG + chr4_1:79440803-79440822 None:intergenic 30.0%
GAAATGACTAGTATAGCAAA+GGG + chr4_1:79440804-79440823 None:intergenic 30.0%
AGAAATGACTAGTATAGCAA+AGG + chr4_1:79440805-79440824 None:intergenic 30.0%
TCAGTTGTAATGTTATCGTT+AGG - chr4_1:79440867-79440886 Msa0575550:intron 30.0%
ACATATCTGAGGATAATAGT+GGG - chr4_1:79440929-79440948 Msa0575550:intron 30.0%
ATGATGGCTTAATAGTTAAG+TGG - chr4_1:79441181-79441200 Msa0575550:intron 30.0%
TAGCAGTAAATTACAAAGGA+AGG - chr4_1:79441221-79441240 Msa0575550:intron 30.0%
! GTTTTGCTTATACTCTTTGA+CGG - chr4_1:79441318-79441337 Msa0575550:intron 30.0%
CCAAATCAAATTGGAGAAAA+TGG + chr4_1:79441381-79441400 None:intergenic 30.0%
! CCATTTTCTCCAATTTGATT+TGG - chr4_1:79441378-79441397 Msa0575550:intron 30.0%
CATTCATTACTAGATGAGTT+TGG - chr4_1:79441731-79441750 Msa0575550:intron 30.0%
ACGAAACATTTCTCTCTATA+CGG - chr4_1:79441823-79441842 Msa0575550:intron 30.0%
ATAATATCTTGGGACTAAGA+AGG + chr4_1:79441886-79441905 None:intergenic 30.0%
GATATTTAGCAATTAGTGTG+CGG - chr4_1:79441983-79442002 Msa0575550:intron 30.0%
ATATTTAGCAATTAGTGTGC+GGG - chr4_1:79441984-79442003 Msa0575550:intron 30.0%
ATTGAAACTAGAACAAGTTC+AGG + chr4_1:79442199-79442218 None:intergenic 30.0%
!! GTTCTAGTTTCAATTGATTC+AGG - chr4_1:79442205-79442224 Msa0575550:intron 30.0%
GTTGTGTCAATCATTAATCT+TGG - chr4_1:79442253-79442272 Msa0575550:intron 30.0%
CTGCACATATATTCTATTTC+TGG - chr4_1:79442346-79442365 Msa0575550:intron 30.0%
GATGCAAACATTGAAAAATC+TGG + chr4_1:79442439-79442458 None:intergenic 30.0%
!! GATTTTTCAATGTTTGCATC+AGG - chr4_1:79442439-79442458 Msa0575550:CDS 30.0%
!! TTTTTCAATGTTTGCATCAG+GGG - chr4_1:79442441-79442460 Msa0575550:CDS 30.0%
!! TACTAGTACTACTTTTGAAC+CGG - chr4_1:79442513-79442532 Msa0575550:CDS 30.0%
!!! AACATTTTTTCAAACCAAGC+TGG - chr4_1:79442711-79442730 Msa0575550:intron 30.0%
GGCTAATAGAAATACCATAA+AGG - chr4_1:79442969-79442988 Msa0575550:intron 30.0%
!!! TCTTCATCAGTTTTGACTTT+TGG + chr4_1:79443172-79443191 None:intergenic 30.0%
AAAAGTCAAAACTGATGAAG+AGG - chr4_1:79443171-79443190 Msa0575550:CDS 30.0%
AAAGTCAAAACTGATGAAGA+GGG - chr4_1:79443172-79443191 Msa0575550:CDS 30.0%
ACTACTCACAACAAGAAAAA+TGG + chr4_1:79443349-79443368 None:intergenic 30.0%
AAAAATTCTTTGGACAACTC+TGG + chr4_1:79443433-79443452 None:intergenic 30.0%
AAACCAAAATGAGAACATCA+GGG + chr4_1:79443495-79443514 None:intergenic 30.0%
AAAACCAAAATGAGAACATC+AGG + chr4_1:79443496-79443515 None:intergenic 30.0%
ATTCATCATGATAACCGATC+TGG + chr4_1:79436814-79436833 None:intergenic 35.0%
! ATACATAAAAGCGCGAACAA+AGG + chr4_1:79437081-79437100 None:intergenic 35.0%
ATCATGGCTATGTCATTCTT+TGG - chr4_1:79437255-79437274 Msa0575550:CDS 35.0%
CTATGTCATTCTTTGGACTT+TGG - chr4_1:79437262-79437281 Msa0575550:CDS 35.0%
ACTGTGATCAATTTCTGCAA+TGG - chr4_1:79437625-79437644 Msa0575550:intron 35.0%
GATCAATTTCTGCAATGGAT+AGG - chr4_1:79437630-79437649 Msa0575550:intron 35.0%
AATTTCTGCAATGGATAGGT+GGG - chr4_1:79437634-79437653 Msa0575550:intron 35.0%
GTTGTGCTTATAAACCTACA+AGG - chr4_1:79437708-79437727 Msa0575550:intron 35.0%
GATTGCTTAAATCTAAAGGG+AGG + chr4_1:79437788-79437807 None:intergenic 35.0%
GCGAGATTGCTTAAATCTAA+AGG + chr4_1:79437792-79437811 None:intergenic 35.0%
TTAGATTTAAGCAATCTCGC+AGG - chr4_1:79437792-79437811 Msa0575550:CDS 35.0%
! TCTCCATGCATTTTTGTGAA+GGG - chr4_1:79437959-79437978 Msa0575550:CDS 35.0%
TTTCCCTTCACAAAAATGCA+TGG + chr4_1:79437965-79437984 None:intergenic 35.0%
! GTTGTTTGAGTTTATTGGAG+TGG - chr4_1:79438151-79438170 Msa0575550:intron 35.0%
GTTCTCATTAGATGTTGTGT+TGG + chr4_1:79438201-79438220 None:intergenic 35.0%
CTGAATTATCATTAGACGTC+AGG - chr4_1:79438279-79438298 Msa0575550:intron 35.0%
CGATCTAGTAAAGAGAAAAG+GGG + chr4_1:79438335-79438354 None:intergenic 35.0%
GACGATCTAGTAAAGAGAAA+AGG + chr4_1:79438337-79438356 None:intergenic 35.0%
AAAAATGTATATGACCGCAC+GGG + chr4_1:79438362-79438381 None:intergenic 35.0%
! TTTGTTATATGGAGTGTACC+AGG + chr4_1:79438933-79438952 None:intergenic 35.0%
AATTGCACCATGAAATTGGA+GGG + chr4_1:79439056-79439075 None:intergenic 35.0%
CAATTTCATGGTGCAATTCA+GGG - chr4_1:79439058-79439077 Msa0575550:CDS 35.0%
TGATTCTTTCAAAGGACACA+AGG + chr4_1:79439147-79439166 None:intergenic 35.0%
! TGATGTACAATCGGATTTTC+TGG + chr4_1:79439297-79439316 None:intergenic 35.0%
TGAATTCTCATTAGACGTCA+GGG - chr4_1:79439368-79439387 Msa0575550:intron 35.0%
GTTACAAATTTACTGCCATC+TGG + chr4_1:79439600-79439619 None:intergenic 35.0%
!! AACCGTTAGTTCTGACAAAA+AGG - chr4_1:79439617-79439636 Msa0575550:intron 35.0%
!! ACCGTTAGTTCTGACAAAAA+GGG - chr4_1:79439618-79439637 Msa0575550:intron 35.0%
! ACCCTTTTTGTCAGAACTAA+CGG + chr4_1:79439622-79439641 None:intergenic 35.0%
ATCATATTCGATGGAAAGAC+TGG - chr4_1:79439642-79439661 Msa0575550:intron 35.0%
!! TAGCTTACTTGTTTTCCATC+AGG + chr4_1:79439735-79439754 None:intergenic 35.0%
! TTTATTGATTATGGCAGGTC+TGG - chr4_1:79439769-79439788 Msa0575550:intron 35.0%
GAGAGACAAATACGTGAAAA+TGG + chr4_1:79439808-79439827 None:intergenic 35.0%
CATAGAAGTTATTCGAGCTA+AGG - chr4_1:79440003-79440022 Msa0575550:intron 35.0%
!!! ATTTTTGGCACAACAGTCTA+AGG - chr4_1:79440316-79440335 Msa0575550:intron 35.0%
!!! AACAGTCTAAGGCTTTGTTT+TGG - chr4_1:79440327-79440346 Msa0575550:intron 35.0%
!!! TAAGGCTTTGTTTTGGAGTT+TGG - chr4_1:79440334-79440353 Msa0575550:intron 35.0%
! GAACTCCAAAAGTACATTGA+CGG + chr4_1:79440534-79440553 None:intergenic 35.0%
!!! CTTTTGGAGTTCCCATATAT+TGG - chr4_1:79440542-79440561 Msa0575550:CDS 35.0%
ATAAATCTCATTCAAGGTGG+GGG - chr4_1:79440589-79440608 Msa0575550:CDS 35.0%
GAAGATAAAGGAGGAGTAAA+GGG + chr4_1:79440635-79440654 None:intergenic 35.0%
TGAAGATAAAGGAGGAGTAA+AGG + chr4_1:79440636-79440655 None:intergenic 35.0%
!! GATTTTGTTTGAGAGTTTGG+AGG + chr4_1:79440677-79440696 None:intergenic 35.0%
AATGACTAGTATAGCAAAGG+GGG + chr4_1:79440802-79440821 None:intergenic 35.0%
TGAAGATCAGATGTCTAACA+GGG + chr4_1:79440850-79440869 None:intergenic 35.0%
! TGACAAGTCTGCAAAAGTAT+GGG - chr4_1:79440906-79440925 Msa0575550:intron 35.0%
! AAAAGTATGGGACATATCTG+AGG - chr4_1:79440918-79440937 Msa0575550:intron 35.0%
GACATATCTGAGGATAATAG+TGG - chr4_1:79440928-79440947 Msa0575550:intron 35.0%
! TATCTTGTCACTGTTTCTCT+TGG - chr4_1:79441030-79441049 Msa0575550:intron 35.0%
ATATGTCCTGAAAACGATGT+CGG + chr4_1:79441099-79441118 None:intergenic 35.0%
! GTTACTTCTGAGAATGGTTA+AGG + chr4_1:79441136-79441155 None:intergenic 35.0%
GAAGAAGAGATTGTTATGTC+TGG - chr4_1:79441276-79441295 Msa0575550:intron 35.0%
TTAAATGCAAACGACAAGCA+AGG + chr4_1:79441417-79441436 None:intergenic 35.0%
CGAAACATTTCTCTCTATAC+GGG - chr4_1:79441824-79441843 Msa0575550:intron 35.0%
ATGCATGTCTTGATATTACG+TGG - chr4_1:79441927-79441946 Msa0575550:intron 35.0%
AAAGGAAATGAAGGAGTAAG+AGG + chr4_1:79442064-79442083 None:intergenic 35.0%
ACAGAAGAGAAAGGAAATGA+AGG + chr4_1:79442073-79442092 None:intergenic 35.0%
ATCTAGTTGACAGAAGAGAA+AGG + chr4_1:79442082-79442101 None:intergenic 35.0%
TCTCTTCTGTCAACTAGATA+AGG - chr4_1:79442083-79442102 Msa0575550:intron 35.0%
AGTGCAACACTAAAATCCTT+TGG + chr4_1:79442169-79442188 None:intergenic 35.0%
TTAATCGAGAAGCTGTTGTT+TGG - chr4_1:79442467-79442486 Msa0575550:CDS 35.0%
! TAATCGAGAAGCTGTTGTTT+GGG - chr4_1:79442468-79442487 Msa0575550:CDS 35.0%
TAGTACTAGTACTCACATCT+CGG + chr4_1:79442504-79442523 None:intergenic 35.0%
CAGGAAACAAAGTGAAAACA+CGG - chr4_1:79442659-79442678 Msa0575550:intron 35.0%
! TATTTCTATTAGCCACAGGT+TGG + chr4_1:79442963-79442982 None:intergenic 35.0%
! ATGGTATTTCTATTAGCCAC+AGG + chr4_1:79442967-79442986 None:intergenic 35.0%
! GAATATAGTTTGGTTAGCTC+AGG - chr4_1:79443033-79443052 Msa0575550:intron 35.0%
CCTTTACAACTTGATCTTCA+CGG + chr4_1:79443096-79443115 None:intergenic 35.0%
! CGTGAAGATCAAGTTGTAAA+GGG - chr4_1:79443094-79443113 Msa0575550:intron 35.0%
! ATCAAGTTGTAAAGGGAAAG+TGG - chr4_1:79443101-79443120 Msa0575550:intron 35.0%
! TCAAGTTGTAAAGGGAAAGT+GGG - chr4_1:79443102-79443121 Msa0575550:intron 35.0%
!!! GACTTTTGGAAGCATTGTAT+AGG + chr4_1:79443158-79443177 None:intergenic 35.0%
! CAAAAGCTCACTTGTCTTTT+AGG + chr4_1:79443234-79443253 None:intergenic 35.0%
! CTATTGATTGTGCCATATGA+AGG - chr4_1:79443323-79443342 Msa0575550:CDS 35.0%
CAAGAAAAATGGCCTTCATA+TGG + chr4_1:79443338-79443357 None:intergenic 35.0%
TTGATTCCCTGTAATGTACT+TGG + chr4_1:79443456-79443475 None:intergenic 35.0%
! AATCCCTGATGTTCTCATTT+TGG - chr4_1:79443489-79443508 Msa0575550:CDS 35.0%
TCTCTCTTTCAAGATGAGCT+CGG - chr4_1:79436686-79436705 Msa0575550:three_prime_UTR 40.0%
! ATTTTCACCCAACGGTGAAT+GGG - chr4_1:79436896-79436915 Msa0575550:three_prime_UTR 40.0%
AAGGAGTTTCGTGTTCTTTC+TGG - chr4_1:79436984-79437003 Msa0575550:three_prime_UTR 40.0%
AGGAGTTTCGTGTTCTTTCT+GGG - chr4_1:79436985-79437004 Msa0575550:three_prime_UTR 40.0%
CAATTTCTGCAATGGATAGG+TGG - chr4_1:79437633-79437652 Msa0575550:intron 40.0%
AACTCAAAACTCGTCTTGAG+TGG + chr4_1:79437691-79437710 None:intergenic 40.0%
TTTAAGCAATCTCGCAGGTA+TGG - chr4_1:79437797-79437816 Msa0575550:CDS 40.0%
GTATGGTGTGAGAAACTCAA+TGG - chr4_1:79437814-79437833 Msa0575550:CDS 40.0%
! CTCTCCATGCATTTTTGTGA+AGG - chr4_1:79437958-79437977 Msa0575550:CDS 40.0%
ATTAGACGTCAGGGTAAAAC+TGG - chr4_1:79438289-79438308 Msa0575550:intron 40.0%
TTAGACGTCAGGGTAAAACT+GGG - chr4_1:79438290-79438309 Msa0575550:intron 40.0%
!! AAATTGGTGCTACAGCAGTT+GGG + chr4_1:79439000-79439019 None:intergenic 40.0%
!! AAAATTGGTGCTACAGCAGT+TGG + chr4_1:79439001-79439020 None:intergenic 40.0%
ATTGCACCATGAAATTGGAG+GGG + chr4_1:79439055-79439074 None:intergenic 40.0%
GAATTGCACCATGAAATTGG+AGG + chr4_1:79439057-79439076 None:intergenic 40.0%
CCTGAATTGCACCATGAAAT+TGG + chr4_1:79439060-79439079 None:intergenic 40.0%
CCAATTTCATGGTGCAATTC+AGG - chr4_1:79439057-79439076 Msa0575550:CDS 40.0%
TAAGTTAGCGTCTGTGATGA+AGG - chr4_1:79439184-79439203 Msa0575550:CDS 40.0%
ACGTGGCAATGATGTACAAT+CGG + chr4_1:79439306-79439325 None:intergenic 40.0%
CTGAATTCTCATTAGACGTC+AGG - chr4_1:79439367-79439386 Msa0575550:intron 40.0%
ATTAGACGTCAGGGTAAAAC+TGG - chr4_1:79438289-79438308 Msa0575550:intron 40.0%
TTAGACGTCAGGGTAAAACT+GGG - chr4_1:79438290-79438309 Msa0575550:intron 40.0%
TGTGTGAGATATTCTCCAGA+TGG - chr4_1:79439582-79439601 Msa0575550:intron 40.0%
ATCGGTGAGTTATCTTCTGA+AGG - chr4_1:79439672-79439691 Msa0575550:intron 40.0%
CAGCATAAATACTGCCAGTA+TGG + chr4_1:79439701-79439720 None:intergenic 40.0%
GCAGTATTTATGCTGTTAGC+TGG - chr4_1:79439706-79439725 Msa0575550:intron 40.0%
AGTTATTCGAGCTAAGGGAT+AGG - chr4_1:79440009-79440028 Msa0575550:intron 40.0%
! TCCAAAAGTACATTGACGGA+GGG + chr4_1:79440530-79440549 None:intergenic 40.0%
TAAAGGAGGAGTAAAGGGAA+GGG + chr4_1:79440630-79440649 None:intergenic 40.0%
ATAAAGGAGGAGTAAAGGGA+AGG + chr4_1:79440631-79440650 None:intergenic 40.0%
CTGAAGATCAGATGTCTAAC+AGG + chr4_1:79440851-79440870 None:intergenic 40.0%
CTGACAAGTCTGCAAAAGTA+TGG - chr4_1:79440905-79440924 Msa0575550:intron 40.0%
! ATCTGAGGATAATAGTGGGA+AGG - chr4_1:79440933-79440952 Msa0575550:intron 40.0%
!! ACATTGATTTGTTCTGCCTC+TGG - chr4_1:79440964-79440983 Msa0575550:intron 40.0%
GAGTTGAAGACATGCTTGTA+GGG - chr4_1:79440989-79441008 Msa0575550:intron 40.0%
CAAGATAATCGTTCAACCAC+AGG + chr4_1:79441017-79441036 None:intergenic 40.0%
! TTGTCACTGTTTCTCTTGGT+GGG - chr4_1:79441034-79441053 Msa0575550:intron 40.0%
TATGTCCTGAAAACGATGTC+GGG + chr4_1:79441098-79441117 None:intergenic 40.0%
! ACTTCTGAGAATGGTTAAGG+AGG + chr4_1:79441133-79441152 None:intergenic 40.0%
! TCTAGGGTTACTTCTGAGAA+TGG + chr4_1:79441142-79441161 None:intergenic 40.0%
CTCCTGTCTTGTAGTTATGA+TGG - chr4_1:79441165-79441184 Msa0575550:intron 40.0%
AGCCATCATAACTACAAGAC+AGG + chr4_1:79441170-79441189 None:intergenic 40.0%
! GTTAAGTGGATTCAAGGGAT+TGG - chr4_1:79441195-79441214 Msa0575550:intron 40.0%
AGTGCTTCATGGAGATTTCT+AGG + chr4_1:79441514-79441533 None:intergenic 40.0%
! AGAAATCTCCATGAAGCACT+TGG - chr4_1:79441514-79441533 Msa0575550:intron 40.0%
CACACGAGACAATTTCTGAT+TGG - chr4_1:79441616-79441635 Msa0575550:intron 40.0%
CTTCTGTCAACTAGATAAGG+CGG - chr4_1:79442086-79442105 Msa0575550:intron 40.0%
TTCTGTCAACTAGATAAGGC+GGG - chr4_1:79442087-79442106 Msa0575550:intron 40.0%
! ATAAGGCGGGTTTCTTTACA+TGG - chr4_1:79442100-79442119 Msa0575550:intron 40.0%
! TAAGGCGGGTTTCTTTACAT+GGG - chr4_1:79442101-79442120 Msa0575550:intron 40.0%
GATGCTGAAGCCATTGATAT+CGG - chr4_1:79442136-79442155 Msa0575550:intron 40.0%
! TGGTTGACTTCCGATATCAA+TGG + chr4_1:79442149-79442168 None:intergenic 40.0%
TGATATCGGAAGTCAACCAA+AGG - chr4_1:79442150-79442169 Msa0575550:intron 40.0%
GATGGAAGTGAAGCCATTAT+TGG - chr4_1:79442307-79442326 Msa0575550:intron 40.0%
AGACTGTCCTTGAGAAACAT+AGG - chr4_1:79442386-79442405 Msa0575550:intron 40.0%
GACTGTCCTTGAGAAACATA+GGG - chr4_1:79442387-79442406 Msa0575550:intron 40.0%
ACTGTCCTTGAGAAACATAG+GGG - chr4_1:79442388-79442407 Msa0575550:intron 40.0%
AGTACTAGTACTCACATCTC+GGG + chr4_1:79442503-79442522 None:intergenic 40.0%
TCGTTATTTAAAGGCCAGCT+TGG + chr4_1:79442728-79442747 None:intergenic 40.0%
ACATGTTGTACCATACTGCA+CGG - chr4_1:79442854-79442873 Msa0575550:intron 40.0%
GACAATTTATCCGTGCAGTA+TGG + chr4_1:79442867-79442886 None:intergenic 40.0%
CACGGATAAATTGTCTTGCT+TGG - chr4_1:79442872-79442891 Msa0575550:intron 40.0%
TAGCAATCCTACTGCTATCA+GGG + chr4_1:79442900-79442919 None:intergenic 40.0%
ATATGAGATTGACCAACCTG+TGG - chr4_1:79442948-79442967 Msa0575550:intron 40.0%
TACAACTTGATCTTCACGGA+GGG + chr4_1:79443092-79443111 None:intergenic 40.0%
TTACAACTTGATCTTCACGG+AGG + chr4_1:79443093-79443112 None:intergenic 40.0%
! CCGTGAAGATCAAGTTGTAA+AGG - chr4_1:79443093-79443112 Msa0575550:intron 40.0%
TTATCACCCCAAGTTAGAGA+GGG - chr4_1:79443201-79443220 Msa0575550:CDS 40.0%
AAACATCCCCTCTCTAACTT+GGG + chr4_1:79443211-79443230 None:intergenic 40.0%
ACTGTTTGTAGCTAGCTGAT+TGG - chr4_1:79443531-79443550 Msa0575550:exon 40.0%
AATGCAGTGCACGATGATGA+TGG + chr4_1:79436665-79436684 None:intergenic 45.0%
! GTAGGTGATGGTGTTGGATT+TGG + chr4_1:79436784-79436803 None:intergenic 45.0%
! ATTGGTGTAGGTGATGGTGT+TGG + chr4_1:79436790-79436809 None:intergenic 45.0%
CATGATAACCGATCTGGCAT+TGG + chr4_1:79436808-79436827 None:intergenic 45.0%
GTAAGCATGTTCGCCATAGA+CGG + chr4_1:79436859-79436878 None:intergenic 45.0%
! GATTTTCACCCAACGGTGAA+TGG - chr4_1:79436895-79436914 Msa0575550:three_prime_UTR 45.0%
AGTTTCGTGTTCTTTCTGGG+AGG - chr4_1:79436988-79437007 Msa0575550:three_prime_UTR 45.0%
GCGACAATTCTGATACCATC+AGG + chr4_1:79437035-79437054 None:intergenic 45.0%
! GGTATCAGAATTGTCGCTTC+TGG - chr4_1:79437038-79437057 Msa0575550:three_prime_UTR 45.0%
CAATGGATAGGTGGGATTCT+GGG - chr4_1:79437642-79437661 Msa0575550:intron 45.0%
!! TGGGATTCTGGGACTAATGT+TGG - chr4_1:79437653-79437672 Msa0575550:intron 45.0%
! ACAATGCGAAAAGGCCTTGT+AGG + chr4_1:79437725-79437744 None:intergenic 45.0%
GACAAGAAAATCCTCTCCAC+AGG + chr4_1:79437750-79437769 None:intergenic 45.0%
TGGTGTGAGAAACTCAATGG+CGG - chr4_1:79437817-79437836 Msa0575550:CDS 45.0%
GGTAGCAAAGTGAGCTTACA+TGG + chr4_1:79438235-79438254 None:intergenic 45.0%
AAAGACACACACATAGGACC+TGG - chr4_1:79438912-79438931 Msa0575550:intron 45.0%
TCTAACCCCCTCCAATTTCA+TGG - chr4_1:79439046-79439065 Msa0575550:CDS 45.0%
TTGCACCATGAAATTGGAGG+GGG + chr4_1:79439054-79439073 None:intergenic 45.0%
GGAAAGACTGGAGAGAAGAT+CGG - chr4_1:79439654-79439673 Msa0575550:intron 45.0%
! GGTGAGTTATCTTCTGAAGG+TGG - chr4_1:79439675-79439694 Msa0575550:intron 45.0%
!!! GGCTTTGTTTTGGAGTTTGG+AGG - chr4_1:79440337-79440356 Msa0575550:intron 45.0%
TGGAGTTTGGAGGAAAACAG+TGG - chr4_1:79440347-79440366 Msa0575550:intron 45.0%
GGAGTTTGGAGGAAAACAGT+GGG - chr4_1:79440348-79440367 Msa0575550:intron 45.0%
TTTGGAGGAAAACAGTGGGA+GGG - chr4_1:79440352-79440371 Msa0575550:intron 45.0%
! CTCCAAAAGTACATTGACGG+AGG + chr4_1:79440531-79440550 None:intergenic 45.0%
TGTTTGAGAGTTTGGAGGGA+GGG + chr4_1:79440672-79440691 None:intergenic 45.0%
TTGTTTGAGAGTTTGGAGGG+AGG + chr4_1:79440673-79440692 None:intergenic 45.0%
!! TTGATTTGTTCTGCCTCTGG+TGG - chr4_1:79440967-79440986 Msa0575550:intron 45.0%
GGAGTTGAAGACATGCTTGT+AGG - chr4_1:79440988-79441007 Msa0575550:intron 45.0%
! CTTGTCACTGTTTCTCTTGG+TGG - chr4_1:79441033-79441052 Msa0575550:intron 45.0%
ATGTCCTGAAAACGATGTCG+GGG + chr4_1:79441097-79441116 None:intergenic 45.0%
!! TACAAGACAGGAGCACTCTA+GGG + chr4_1:79441158-79441177 None:intergenic 45.0%
AGTGTGCGGGACAAATTTCA+TGG - chr4_1:79441997-79442016 Msa0575550:intron 45.0%
! AAGGCGGGTTTCTTTACATG+GGG - chr4_1:79442102-79442121 Msa0575550:intron 45.0%
TCTTTACATGGGGATCAGTG+CGG - chr4_1:79442112-79442131 Msa0575550:intron 45.0%
GGAAGTGAAGCCATTATTGG+TGG - chr4_1:79442310-79442329 Msa0575550:intron 45.0%
! TGAAGCCATTATTGGTGGTC+AGG - chr4_1:79442315-79442334 Msa0575550:intron 45.0%
ACCATCCTGACCACCAATAA+TGG + chr4_1:79442323-79442342 None:intergenic 45.0%
TAGCACCCCTATGTTTCTCA+AGG + chr4_1:79442396-79442415 None:intergenic 45.0%
AGCAATCCTACTGCTATCAG+GGG + chr4_1:79442899-79442918 None:intergenic 45.0%
GTAGCAATCCTACTGCTATC+AGG + chr4_1:79442901-79442920 None:intergenic 45.0%
GATAGCAGTAGGATTGCTAC+AGG - chr4_1:79442901-79442920 Msa0575550:intron 45.0%
!! ACCATAAAGGGTGCTCACTT+AGG - chr4_1:79442982-79443001 Msa0575550:intron 45.0%
ACCTAAGTGAGCACCCTTTA+TGG + chr4_1:79442986-79443005 None:intergenic 45.0%
!! ATAAAGGGTGCTCACTTAGG+TGG - chr4_1:79442985-79443004 Msa0575550:intron 45.0%
!! TAAAGGGTGCTCACTTAGGT+GGG - chr4_1:79442986-79443005 Msa0575550:intron 45.0%
CTCACTTAGGTGGGGTTTAT+GGG - chr4_1:79442995-79443014 Msa0575550:intron 45.0%
! AGGATGCTTTTATCCGTGTC+TGG - chr4_1:79443058-79443077 Msa0575550:intron 45.0%
ACAACTTGATCTTCACGGAG+GGG + chr4_1:79443091-79443110 None:intergenic 45.0%
CTTATCACCCCAAGTTAGAG+AGG - chr4_1:79443200-79443219 Msa0575550:CDS 45.0%
TATCACCCCAAGTTAGAGAG+GGG - chr4_1:79443202-79443221 Msa0575550:CDS 45.0%
AACATCCCCTCTCTAACTTG+GGG + chr4_1:79443210-79443229 None:intergenic 45.0%
GAAACATCCCCTCTCTAACT+TGG + chr4_1:79443212-79443231 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAGTTAT+TGG + chr4_1:79438428-79438447 None:intergenic 5.0%
!!! ATATTATTTTTAAAAAAACA+TGG - chr4_1:79438714-79438733 Msa0575550:intron 5.0%
!! GTGCACGATGATGATGGTGA+TGG + chr4_1:79436659-79436678 None:intergenic 50.0%
CTCTTTCAAGATGAGCTCGG+TGG - chr4_1:79436689-79436708 Msa0575550:three_prime_UTR 50.0%
!! TCTGGCATTGGTGTAGGTGA+TGG + chr4_1:79436796-79436815 None:intergenic 50.0%
CACCTACACCAATGCCAGAT+CGG - chr4_1:79436797-79436816 Msa0575550:three_prime_UTR 50.0%
!! AACCGATCTGGCATTGGTGT+AGG + chr4_1:79436802-79436821 None:intergenic 50.0%
CATAGACGGAGACATGAAGG+GGG + chr4_1:79436845-79436864 None:intergenic 50.0%
CCATAGACGGAGACATGAAG+GGG + chr4_1:79436846-79436865 None:intergenic 50.0%
GCCATAGACGGAGACATGAA+GGG + chr4_1:79436847-79436866 None:intergenic 50.0%
GTTGGGTGAAAATCGAGCGA+CGG + chr4_1:79436889-79436908 None:intergenic 50.0%
! GTCGCTCGATTTTCACCCAA+CGG - chr4_1:79436888-79436907 Msa0575550:three_prime_UTR 50.0%
GATGCAACCCATTCACCGTT+GGG + chr4_1:79436906-79436925 None:intergenic 50.0%
AGATGCAACCCATTCACCGT+TGG + chr4_1:79436907-79436926 None:intergenic 50.0%
GGAGGATCGATGATCTTCAG+TGG - chr4_1:79437006-79437025 Msa0575550:three_prime_UTR 50.0%
GATCTTCAGTGGTCTCCTGA+TGG - chr4_1:79437017-79437036 Msa0575550:three_prime_UTR 50.0%
GTCGCTTCTGGTGAAGCTAA+AGG - chr4_1:79437050-79437069 Msa0575550:three_prime_UTR 50.0%
GCAATGGATAGGTGGGATTC+TGG - chr4_1:79437641-79437660 Msa0575550:intron 50.0%
CCACAGGTGACAATGCGAAA+AGG + chr4_1:79437734-79437753 None:intergenic 50.0%
! CCTTTTCGCATTGTCACCTG+TGG - chr4_1:79437731-79437750 Msa0575550:intron 50.0%
TACTAGATCGTCTACCCGTG+CGG - chr4_1:79438345-79438364 Msa0575550:intron 50.0%
CTGATGACACGGGACATGTA+TGG + chr4_1:79439111-79439130 None:intergenic 50.0%
GGTAGCAAAGTGAGCTTACG+TGG + chr4_1:79439323-79439342 None:intergenic 50.0%
! TCTTCTGAAGGTGGCCATAC+TGG - chr4_1:79439684-79439703 Msa0575550:intron 50.0%
GTTTGGAGGAAAACAGTGGG+AGG - chr4_1:79440351-79440370 Msa0575550:intron 50.0%
TTGGAGGAAAACAGTGGGAG+GGG - chr4_1:79440353-79440372 Msa0575550:intron 50.0%
GAGGGGAGGAAAGAAAAGGT+AGG - chr4_1:79440370-79440389 Msa0575550:intron 50.0%
AGTACATTGACGGAGGGCTT+TGG + chr4_1:79440524-79440543 None:intergenic 50.0%
! GCCCTCCGTCAATGTACTTT+TGG - chr4_1:79440526-79440545 Msa0575550:CDS 50.0%
GAGGAGTAAAGGGAAGGGAA+AGG + chr4_1:79440625-79440644 None:intergenic 50.0%
!! GAGGGCTCTGAAGATAAAGG+AGG + chr4_1:79440644-79440663 None:intergenic 50.0%
GTTTGAGAGTTTGGAGGGAG+GGG + chr4_1:79440671-79440690 None:intergenic 50.0%
CATGTCTTCAACTCCACCAG+AGG + chr4_1:79440983-79441002 None:intergenic 50.0%
! AAAGCCCCGACATCGTTTTC+AGG - chr4_1:79441090-79441109 Msa0575550:intron 50.0%
!! CTACAAGACAGGAGCACTCT+AGG + chr4_1:79441159-79441178 None:intergenic 50.0%
CTCTTCTTCTGCAGCTGCTA+AGG + chr4_1:79441265-79441284 None:intergenic 50.0%
TGCACTAGCCAAGTGCTTCA+TGG + chr4_1:79441525-79441544 None:intergenic 50.0%
GCATCTGTTGTCTCGTCTGA+TGG - chr4_1:79442289-79442308 Msa0575550:intron 50.0%
! GCCATTATTGGTGGTCAGGA+TGG - chr4_1:79442319-79442338 Msa0575550:intron 50.0%
ACTAGTACTCACATCTCGGG+AGG + chr4_1:79442500-79442519 None:intergenic 50.0%
!! AAAGGGTGCTCACTTAGGTG+GGG - chr4_1:79442987-79443006 Msa0575550:intron 50.0%
GCTCACTTAGGTGGGGTTTA+TGG - chr4_1:79442994-79443013 Msa0575550:intron 50.0%
! TAGTTTGGTTAGCTCAGGCG+AGG - chr4_1:79443038-79443057 Msa0575550:intron 50.0%
GAGGGGTTATCTTCCAGACA+CGG + chr4_1:79443074-79443093 None:intergenic 50.0%
GCGACTTGCAAGCTTCTGTT+TGG - chr4_1:79443294-79443313 Msa0575550:CDS 50.0%
! GATGAGCTCGGTGGAGTTGA+CGG - chr4_1:79436698-79436717 Msa0575550:three_prime_UTR 55.0%
! ACGTTCTGTTGAAGGCGTGC+AGG + chr4_1:79436733-79436752 None:intergenic 55.0%
TGCACGCCTTCAACAGAACG+TGG - chr4_1:79436732-79436751 Msa0575550:three_prime_UTR 55.0%
GGCCGTGGTATTCTCATCTC+CGG - chr4_1:79436753-79436772 Msa0575550:three_prime_UTR 55.0%
CGCCGGAGATGAGAATACCA+CGG + chr4_1:79436758-79436777 None:intergenic 55.0%
! GGTGTTGGATTTGGAGTCGC+CGG + chr4_1:79436775-79436794 None:intergenic 55.0%
CGGAGACATGAAGGGGGTTA+TGG + chr4_1:79436839-79436858 None:intergenic 55.0%
CCCCTTCATGTCTCCGTCTA+TGG - chr4_1:79436843-79436862 Msa0575550:three_prime_UTR 55.0%
CGCCATAGACGGAGACATGA+AGG + chr4_1:79436848-79436867 None:intergenic 55.0%
AAAATCGAGCGACGGTGGCA+GGG + chr4_1:79436881-79436900 None:intergenic 55.0%
GTTGCATCTGCTGACGTGTC+AGG - chr4_1:79436918-79436937 Msa0575550:three_prime_UTR 55.0%
! TGTCAGGTACCGTGAGGATC+TGG - chr4_1:79436934-79436953 Msa0575550:three_prime_UTR 55.0%
! GTCAGGTACCGTGAGGATCT+GGG - chr4_1:79436935-79436954 Msa0575550:three_prime_UTR 55.0%
! TCAGGTACCGTGAGGATCTG+GGG - chr4_1:79436936-79436955 Msa0575550:three_prime_UTR 55.0%
TCGCATTGTCACCTGTGGAG+AGG - chr4_1:79437736-79437755 Msa0575550:CDS 55.0%
GCTGTTAGCTGGAGTCCTGA+TGG - chr4_1:79439717-79439736 Msa0575550:intron 55.0%
GTGGGAGGGGAGGAAAGAAA+AGG - chr4_1:79440366-79440385 Msa0575550:intron 55.0%
!! GGGGAGGGCTCTGAAGATAA+AGG + chr4_1:79440647-79440666 None:intergenic 55.0%
! ACATGCTTGTAGGGTGCCTG+TGG - chr4_1:79440998-79441017 Msa0575550:intron 55.0%
TCAGGAGTTGTCATGCTGCG+TGG - chr4_1:79442223-79442242 Msa0575550:intron 55.0%
TACTCACATCTCGGGAGGCA+CGG + chr4_1:79442495-79442514 None:intergenic 55.0%
CTTGGTCCCCTGATAGCAGT+AGG - chr4_1:79442890-79442909 Msa0575550:intron 55.0%
CCACGGCCACGTTCTGTTGA+AGG + chr4_1:79436741-79436760 None:intergenic 60.0%
CCTTCAACAGAACGTGGCCG+TGG - chr4_1:79436738-79436757 Msa0575550:three_prime_UTR 60.0%
GAAAATCGAGCGACGGTGGC+AGG + chr4_1:79436882-79436901 None:intergenic 60.0%
GGGTGAAAATCGAGCGACGG+TGG + chr4_1:79436886-79436905 None:intergenic 60.0%
! CTGACGTGTCAGGTACCGTG+AGG - chr4_1:79436928-79436947 Msa0575550:three_prime_UTR 60.0%
GCGAGTTCCCCAGATCCTCA+CGG + chr4_1:79436946-79436965 None:intergenic 60.0%
GAGGAAAACAGTGGGAGGGG+AGG - chr4_1:79440356-79440375 Msa0575550:intron 60.0%
AGAGTTTGGAGGGAGGGGAG+GGG + chr4_1:79440666-79440685 None:intergenic 60.0%
GAGAGTTTGGAGGGAGGGGA+GGG + chr4_1:79440667-79440686 None:intergenic 60.0%
TGAGAGTTTGGAGGGAGGGG+AGG + chr4_1:79440668-79440687 None:intergenic 60.0%
TTTGGAGGGAGGGGAGGGGA+GGG + chr4_1:79440662-79440681 None:intergenic 65.0%
GTTTGGAGGGAGGGGAGGGG+AGG + chr4_1:79440663-79440682 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79436577 79443665 79436577 ID=Msa0575550;Name=Msa0575550
chr4_1 mRNA 79436577 79443665 79436577 ID=Msa0575550-mRNA-1;Parent=Msa0575550;Name=Msa0575550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|1|1|6|567|611
chr4_1 exon 79436577 79437401 79436577 ID=Msa0575550-mRNA-1:exon:28330;Parent=Msa0575550-mRNA-1
chr4_1 exon 79437735 79438142 79437735 ID=Msa0575550-mRNA-1:exon:28329;Parent=Msa0575550-mRNA-1
chr4_1 exon 79438931 79439353 79438931 ID=Msa0575550-mRNA-1:exon:28328;Parent=Msa0575550-mRNA-1
chr4_1 exon 79440496 79440682 79440496 ID=Msa0575550-mRNA-1:exon:28327;Parent=Msa0575550-mRNA-1
chr4_1 exon 79442429 79442590 79442429 ID=Msa0575550-mRNA-1:exon:28326;Parent=Msa0575550-mRNA-1
chr4_1 exon 79443146 79443665 79443146 ID=Msa0575550-mRNA-1:exon:28325;Parent=Msa0575550-mRNA-1
chr4_1 five_prime_UTR 79443544 79443665 79443544 ID=Msa0575550-mRNA-1:five_prime_utr;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79443146 79443543 79443146 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79442429 79442590 79442429 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79440496 79440682 79440496 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79438931 79439353 79438931 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79437735 79438142 79437735 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 CDS 79437144 79437401 79437144 ID=Msa0575550-mRNA-1:cds;Parent=Msa0575550-mRNA-1
chr4_1 three_prime_UTR 79436577 79437143 79436577 ID=Msa0575550-mRNA-1:three_prime_utr;Parent=Msa0575550-mRNA-1
Gene Sequence

>Msa0575550

ATGAGCTCGGTGGAGTTGACGGAGACTTACGCCTGCACGCCTTCAACAGAACGTGGCCGTGGTATTCTCATCTCCGGCGACTCCAAATCCAACACCATCACCTACACCAATGCCAGATCGGTTATCATGATGAATCTCCATAACCCCCTTCATGTCTCCGTCTATGGCGAACATGCTTACCCTGCCACCGTCGCTCGATTTTCACCCAACGGTGAATGGGTTGCATCTGCTGACGTGTCAGGTACCGTGAGGATCTGGGGAACTCGCAATGAATTCGTTTTGAAGAAGGAGTTTCGTGTTCTTTCTGGGAGGATCGATGATCTTCAGTGGTCTCCTGATGGTATCAGAATTGTCGCTTCTGGTGAAGCTAAAGGAAACTCCTTTGTTCGCGCTTTTATGTGGGATTCTGGGACTAATGTTGGTGAATTTGATGGCCACTCAAGACGAGTTTTGAGTTGTGCTTATAAACCTACAAGGCCTTTTCGCATTGTCACCTGTGGAGAGGATTTTCTTGTCAACTTTTATGAAGGACCTCCCTTTAGATTTAAGCAATCTCGCAGGGATCATTCAAATTTTGTCAATTGTGTGAGATATTCTCCAGATGGCAGTAAATTTGTAACCGTTAGTTCTGACAAAAAGGGTATCATATTCGATGGAAAGACTGGAGAGAAGATCGGTGAGTTATCTTCTGAAGGTGGCCATACTGGCAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAAGTGCTGACTGTATCTGCTGACAAGTCTGCAAAAGTATGGGACATATCTGAGGATAATAGTGGGAAGGTGAAGAAAACATTGATTTGTTCTGCCTCTGGTGGAGTTGAAGACATGCTTGTAGGGTGCCTGTGGTTGAACGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATATCAATTTTTTCTGCAAGTGATCTTGATAAAGCCCCGACATCGTTTTCAGGACATATGAAAAATGTTTCCTCCTTAACCATTCTCAGAAGTAACCCTAGAGTGCTCCTGTCTTGTAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGCAGTAAATTACAAAGGAAGGAAAATTCTCAAATCAAATCCTTAGCAGCTGCAGAAGAAGAGATTGTTATGTCTGGTTTTGATAATAAGATAAGGCGGGTTTCTTTACATGGGGATCAGTGCGGAGATGCTGAAGCCATTGATATCGGAAGTCAACCAAAGGATTTTAGTGTTGCACTTTCGTCTCCTGAACTTGTTCTAGTTTCAATTGATTCAGGAGTTGTCATGCTGCGTGGCACAAAAGTTGTGTCAATCATTAATCTTGGATTTACTGTTACGGCATCTGTTGTCTCGTCTGATGGAAGTGAAGCCATTATTGGTGGTCAGGATGGTAAACTGCACATATATTCTATTTCTGGTGATACACTTGTTGAAGAGACTGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACAGTATTCTCCAGATTTTTCAATGTTTGCATCAGGGGATGTTAATCGAGAAGCTGTTGTTTGGGACCGTGCCTCCCGAGATGTGAAGCTCAAGAACATGTTGTACCATACTGCACGGATAAATTGTCTTGCTTGGTCCCCTGATAGCAGTAGGATTGCTACAGGATCACTCGACATGTGTGTTATTATATATGAGATTGACCAACCTGTGGCTAATAGAAATACCATAAAGGGTGCTCACTTAGGTGGGGTTTATGGGTTAGTATTCACTGATGAATATAGTTTGGTTAGCTCAGGCGAGGATGCTTTTATCCGTGTCTGGAAGATAACCCCTCCGTGA
Protein sequence

>Msa0575550

MSSVELTETYACTPSTERGRGILISGDSKSNTITYTNARSVIMMNLHNPLHVSVYGEHAYPATVARFSPNGEWVASADVSGTVRIWGTRNEFVLKKEFRVLSGRIDDLQWSPDGIRIVASGEAKGNSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQSRRDHSNFVNCVRYSPDGSKFVTVSSDKKGIIFDGKTGEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISEDNSGKVKKTLICSASGGVEDMLVGCLWLNDYLVTVSLGGTISIFSASDLDKAPTSFSGHMKNVSSLTILRSNPRVLLSCSYDGLIVKWIQGIGYSSKLQRKENSQIKSLAAAEEEIVMSGFDNKIRRVSLHGDQCGDAEAIDIGSQPKDFSVALSSPELVLVSIDSGVVMLRGTKVVSIINLGFTVTASVVSSDGSEAIIGGQDGKLHIYSISGDTLVEETVLEKHRGAISVIQYSPDFSMFASGDVNREAVVWDRASRDVKLKNMLYHTARINCLAWSPDSSRIATGSLDMCVIIYEIDQPVANRNTIKGAHLGGVYGLVFTDEYSLVSSGEDAFIRVWKITPP*