AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0191470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191470 MtrunA17_Chr2g0281411 98.962 289 3 0 1 289 1 289 0.0 586
Msa0191470 MtrunA17_Chr4g0047981 75.563 311 53 2 1 288 1 311 1.98e-164 459
Msa0191470 MtrunA17_Chr4g0022441 66.343 309 77 3 3 288 2 306 3.76e-140 397
Msa0191470 MtrunA17_Chr5g0409961 61.905 273 91 4 1 268 1 265 8.98e-125 357
Msa0191470 MtrunA17_Chr2g0323921 66.176 136 45 1 153 288 66 200 1.70e-58 186
Msa0191470 MtrunA17_Chr2g0323931 42.424 99 31 2 3 79 4 98 4.25e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0191470 AT1G61250.1 72.509 291 75 3 1 288 1 289 3.84e-159 445
Msa0191470 AT1G11180.1 69.966 293 81 3 1 288 1 291 4.24e-152 427
Msa0191470 AT1G11180.3 67.918 293 80 4 1 288 1 284 3.23e-144 407
Msa0191470 AT1G61250.2 73.004 263 66 3 1 260 1 261 4.98e-144 406
Msa0191470 AT2G20840.1 70.280 286 80 2 3 288 2 282 6.89e-143 403
Msa0191470 AT1G11180.2 65.033 306 80 4 1 288 1 297 1.26e-141 400
Msa0191470 AT1G03550.1 64.685 286 97 1 3 288 2 283 8.12e-134 380
Msa0191470 AT2G20840.3 75.314 239 59 0 50 288 1 239 2.45e-129 367
Msa0191470 AT2G20840.2 75.314 239 59 0 50 288 1 239 2.45e-129 367
Msa0191470 AT1G32050.1 61.624 271 94 3 1 269 1 263 8.31e-123 352
Msa0191470 AT1G03550.4 64.729 258 87 1 3 260 2 255 4.92e-120 345
Msa0191470 AT1G03550.3 68.610 223 70 0 66 288 2 224 2.11e-109 316
Msa0191470 AT1G03550.5 64.135 237 81 1 3 239 2 234 2.11e-107 312
Msa0191470 AT1G03550.6 66.818 220 69 1 3 222 2 217 1.83e-103 301
Msa0191470 AT1G03550.2 68.571 210 66 0 79 288 15 224 9.16e-102 297
Msa0191470 AT1G03550.7 66.667 198 62 1 3 200 2 195 1.42e-96 283

Find 102 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATATCATGATGGATAAT+TGG 0.184182 2_1:-7110996 None:intergenic
GCAGATTACAACTATGGTTT+TGG 0.226168 2_1:+7109660 Msa0191470:CDS
ACCGACAGTGCTATTAAATT+TGG 0.229795 2_1:+7112758 Msa0191470:CDS
AAAATAGGAGTTTAGACTTT+AGG 0.255128 2_1:-7108807 None:intergenic
AAGGGTCCTTTCTTTACTTT+TGG 0.262535 2_1:-7108777 None:intergenic
AACCATTATATCGTGCATTT+AGG 0.262649 2_1:+7111746 Msa0191470:CDS
ATTGGTGACTATACTATTAT+TGG 0.271514 2_1:+7113453 Msa0191470:CDS
GTCACCGCAGCTTGGATTAA+AGG 0.279800 2_1:+7111555 Msa0191470:CDS
TATTTGTAACACAATTTCTA+TGG 0.283994 2_1:-7114039 None:intergenic
TTGAAACATTGGTCAGCGTC+TGG 0.297966 2_1:+7113740 Msa0191470:CDS
TACTTCATAGCAGGGGTTCC+TGG 0.299994 2_1:+7111703 Msa0191470:CDS
TTGGTGACTATACTATTATT+GGG 0.324018 2_1:+7113454 Msa0191470:CDS
TACCTAAATGCACGATATAA+TGG 0.351386 2_1:-7111748 None:intergenic
GAACGTGCAGATTACAACTA+TGG 0.367642 2_1:+7109654 Msa0191470:CDS
AGAAAGGGGCTTTGGGACTT+TGG 0.370457 2_1:-7108928 None:intergenic
AGAATACAAGAAAGGGGCTT+TGG 0.375017 2_1:-7108936 None:intergenic
CGATATCATGATGGATAATT+GGG 0.375064 2_1:-7110995 None:intergenic
AACTAGAAAATAATTAAAAT+AGG 0.375493 2_1:-7108822 None:intergenic
TCAATTCAGCCTCCTTGGCT+TGG 0.376025 2_1:-7109867 None:intergenic
AAAGAGGTACTTACAGCAAA+AGG 0.387143 2_1:-7109038 None:intergenic
TAGTTGTAATCTGCACGTTC+AGG 0.387808 2_1:-7109651 None:intergenic
GAAGCTGCACTAGGAGCAAT+GGG 0.395431 2_1:+7113943 Msa0191470:CDS
TCTTATGCAAGAGAACAAAA+TGG 0.396216 2_1:-7108853 None:intergenic
TGAAGTCTTTGAAGGTGAAC+TGG 0.396433 2_1:-7111029 None:intergenic
CCCTGCTATGAAGTAGATAA+TGG 0.406046 2_1:-7111695 None:intergenic
AAATGTAGACATTAAGTGAT+TGG 0.407188 2_1:+7114145 Msa0191470:three_prime_UTR
TTCTGCTTACAGCTTCACCT+TGG 0.408495 2_1:+7112880 Msa0191470:intron
GAATACAAGAAAGGGGCTTT+GGG 0.413404 2_1:-7108935 None:intergenic
TCTGCTTACAGCTTCACCTT+GGG 0.416242 2_1:+7112881 Msa0191470:intron
GCCATTATCTACTTCATAGC+AGG 0.420275 2_1:+7111694 Msa0191470:CDS
CAACATATTGAAGTCTTTGA+AGG 0.421218 2_1:-7111037 None:intergenic
ATTAACAAACCACATATAAC+AGG 0.421811 2_1:-7114106 None:intergenic
ATAGTCACCAATCACATCTA+TGG 0.429556 2_1:-7113442 None:intergenic
ACATAAACTACCTCGTGAAA+TGG 0.432174 2_1:-7110672 None:intergenic
TGCTTGTTTCTATCATCTCA+TGG 0.432407 2_1:+7108971 Msa0191470:exon
AAAGAATGAAGAAGTTGTTA+TGG 0.438294 2_1:-7108902 None:intergenic
GGTTAGTGTTGTGCCTTACA+TGG 0.440099 2_1:+7111520 Msa0191470:CDS
GGTCAGCGTCTGGGTTATCC+AGG 0.451468 2_1:+7113750 Msa0191470:CDS
TGAATTGAGAAAACGAGAAC+AGG 0.474757 2_1:+7109882 Msa0191470:CDS
GTTGACTTGTTCTTCGTCGA+AGG 0.476933 2_1:-7109015 None:intergenic
GCTTATTTGTCCAAAAGAAA+AGG 0.479934 2_1:-7114232 None:intergenic
TTGTTATCGAGGAGAAGAAT+TGG 0.480639 2_1:+7110961 Msa0191470:CDS
ATGAAGAAGTTGTTATGGTA+AGG 0.491405 2_1:-7108897 None:intergenic
GGAAGCTGCACTAGGAGCAA+TGG 0.491496 2_1:+7113942 Msa0191470:CDS
TTGACTTGTTCTTCGTCGAA+GGG 0.494587 2_1:-7109014 None:intergenic
TGTTTCTATCATCTCATGGC+CGG 0.497732 2_1:+7108975 Msa0191470:exon
GCAGAGGAGAATACAAGAAA+GGG 0.499600 2_1:-7108943 None:intergenic
CAGCTACAACATTCCATGTA+AGG 0.505530 2_1:-7111533 None:intergenic
CGTTCAGGATTAAGAGGTGC+AGG 0.511081 2_1:-7109636 None:intergenic
GCAGGTCTAGAATTTGTGGC+AGG 0.511524 2_1:-7109618 None:intergenic
AGCAGAGGAGAATACAAGAA+AGG 0.514574 2_1:-7108944 None:intergenic
AACATGCTACCTGTTATATG+TGG 0.515170 2_1:+7114097 Msa0191470:three_prime_UTR
AGGTGCAGGTCTAGAATTTG+TGG 0.525747 2_1:-7109622 None:intergenic
CCATTATCTACTTCATAGCA+GGG 0.528046 2_1:+7111695 Msa0191470:CDS
AGCTGACCAAAAGTAAAGAA+AGG 0.529222 2_1:+7108771 None:intergenic
TTTCCTTTGAAAACTATAGG+AGG 0.529946 2_1:-7112928 None:intergenic
TCCTTTGAAAACTATAGGAG+GGG 0.531178 2_1:-7112926 None:intergenic
ATTGTTCTGTCTTGAAACAT+TGG 0.534016 2_1:+7113729 Msa0191470:CDS
TTTCATTCGCGATATCATGA+TGG 0.535225 2_1:-7111004 None:intergenic
TCTGCACGTTCAGGATTAAG+AGG 0.535265 2_1:-7109642 None:intergenic
AAGAGGTACTTACAGCAAAA+GGG 0.537767 2_1:-7109037 None:intergenic
CTGTCAGCCATAGATGTGAT+TGG 0.539516 2_1:+7113435 Msa0191470:CDS
TGAAACATTGGTCAGCGTCT+GGG 0.544642 2_1:+7113741 Msa0191470:CDS
GATATAATGGTTTATACCAC+AGG 0.549797 2_1:-7111735 None:intergenic
TTCCTTTGAAAACTATAGGA+GGG 0.549800 2_1:-7112927 None:intergenic
ACATTTATATTGCCTTCAGA+AGG 0.555762 2_1:-7113986 None:intergenic
ACAGTGCTATTAAATTTGGA+TGG 0.559045 2_1:+7112762 Msa0191470:CDS
GTAAGACTGCTGAGATGAAG+AGG 0.560995 2_1:+7113920 Msa0191470:CDS
TCCAAATTTAATAGCACTGT+CGG 0.561192 2_1:-7112759 None:intergenic
ATGAAGAGGGAAGCTGCACT+AGG 0.565664 2_1:+7113934 Msa0191470:CDS
AGGTCTAGAATTTGTGGCAG+GGG 0.572011 2_1:-7109616 None:intergenic
TATATGTACTTCCGTGGCGG+TGG 0.574961 2_1:+7113898 Msa0191470:CDS
TTCTCCTTTAATCCAAGCTG+CGG 0.576908 2_1:-7111559 None:intergenic
GGGGTTACTGTCGTAACGAC+CGG 0.580055 2_1:-7108994 None:intergenic
TACGATGAAGCACCTTCTGA+AGG 0.580180 2_1:+7113974 Msa0191470:exon
TACCACAGGACATATGCTCC+AGG 0.584654 2_1:-7111721 None:intergenic
TTGTAGCTGTCACCGCAGCT+TGG 0.586800 2_1:+7111547 Msa0191470:CDS
GGAAAGAGAACTCCAAGCCA+AGG 0.588085 2_1:+7109855 Msa0191470:CDS
AGCTGCACTAGGAGCAATGG+GGG 0.596542 2_1:+7113945 Msa0191470:CDS
CAGGTCTAGAATTTGTGGCA+GGG 0.602674 2_1:-7109617 None:intergenic
TCAAAATGCAGGAAGTAAGA+CGG 0.604251 2_1:+7110639 Msa0191470:intron
GAGTTTAGACTTTAGGACAC+AGG 0.610698 2_1:-7108800 None:intergenic
TGACTTGTTCTTCGTCGAAG+GGG 0.613556 2_1:-7109013 None:intergenic
TTCCTGGAGCATATGTCCTG+TGG 0.615005 2_1:+7111719 Msa0191470:CDS
TGGTGACTATACTATTATTG+GGG 0.621523 2_1:+7113455 Msa0191470:CDS
TATACCTCTTGATGCATCAA+CGG 0.625805 2_1:+7109695 Msa0191470:CDS
CAGCTAAGATACAGAACCCA+AGG 0.627459 2_1:-7112897 None:intergenic
TGCAGCTGGAATTGTTATCG+AGG 0.627911 2_1:+7110950 Msa0191470:intron
GCAGCTTGGATTAAAGGAGA+AGG 0.634562 2_1:+7111561 Msa0191470:CDS
CAAGTATATATGTACTTCCG+TGG 0.637194 2_1:+7113892 Msa0191470:CDS
TTAGACTTTAGGACACAGGA+AGG 0.637535 2_1:-7108796 None:intergenic
CATTATCTACTTCATAGCAG+GGG 0.639342 2_1:+7111696 Msa0191470:CDS
CAGAGGAGAATACAAGAAAG+GGG 0.644050 2_1:-7108942 None:intergenic
AGAAACAAGCAAGCAAGCAG+AGG 0.644380 2_1:-7108959 None:intergenic
CATACCGTTGATGCATCAAG+AGG 0.650424 2_1:-7109699 None:intergenic
CAGCAGTCTTACCACCGCCA+CGG 0.656707 2_1:-7113909 None:intergenic
TAAGACTGCTGAGATGAAGA+GGG 0.669382 2_1:+7113921 Msa0191470:CDS
TAGACTTTAGGACACAGGAA+GGG 0.671887 2_1:-7108795 None:intergenic
AAGCTGCACTAGGAGCAATG+GGG 0.689730 2_1:+7113944 Msa0191470:CDS
AAGAGAACTCCAAGCCAAGG+AGG 0.704365 2_1:+7109858 Msa0191470:CDS
GTATATATGTACTTCCGTGG+CGG 0.712863 2_1:+7113895 Msa0191470:CDS
AAAGAAGAAGCCATTTCACG+AGG 0.714436 2_1:+7110662 Msa0191470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAGAAAATAATTAAAAT+AGG - chr2_1:7108825-7108844 None:intergenic 10.0%
!!! CTATATTATTTTTTAAACAT+TGG + chr2_1:7110401-7110420 Msa0191470:intron 10.0%
!!! TTTTAGTCATTTATATATTT+GGG - chr2_1:7111273-7111292 None:intergenic 10.0%
!!! ATTTTAACTTATTCTTAAAA+CGG + chr2_1:7113792-7113811 Msa0191470:intron 10.0%
!!! AAAAGTTATTTTTAGAAAAG+AGG - chr2_1:7109057-7109076 None:intergenic 15.0%
!!! AATTATTTCTTTTTGGATTT+TGG + chr2_1:7109147-7109166 Msa0191470:intron 15.0%
!!! ATTATTTCTTTTTGGATTTT+GGG + chr2_1:7109148-7109167 Msa0191470:intron 15.0%
!! TTAAAATGAAACATGAAAAT+TGG - chr2_1:7109235-7109254 None:intergenic 15.0%
!! TTTAAAAAAATTCAGAATTC+TGG + chr2_1:7109585-7109604 Msa0191470:intron 15.0%
!! ATATGTATAAAAAAAGGATT+TGG - chr2_1:7109750-7109769 None:intergenic 15.0%
!! TTACAGATATGTATAAAAAA+AGG - chr2_1:7109756-7109775 None:intergenic 15.0%
!! TTTAGTCATTTATATATTTG+GGG - chr2_1:7111272-7111291 None:intergenic 15.0%
!!! GTTTTAGTCATTTATATATT+TGG - chr2_1:7111274-7111293 None:intergenic 15.0%
!! TTAACTAATTAAAACTTCTA+CGG - chr2_1:7111928-7111947 None:intergenic 15.0%
!! ATGAGTAAAATAAGTTAATA+TGG + chr2_1:7112578-7112597 Msa0191470:intron 15.0%
!!! TTTTTTTTGTTTTCTTCAAC+TGG + chr2_1:7109076-7109095 Msa0191470:intron 20.0%
!!! TTTTTTTGTTTTCTTCAACT+GGG + chr2_1:7109077-7109096 Msa0191470:intron 20.0%
!!! AGAAATAATTCTGTTGTTTT+AGG - chr2_1:7109137-7109156 None:intergenic 20.0%
!!! ACAACAGAATTATTTCTTTT+TGG + chr2_1:7109140-7109159 Msa0191470:intron 20.0%
!!! TTTCATGTTTCATTTTAAGA+TGG + chr2_1:7109237-7109256 Msa0191470:intron 20.0%
!!! TGTTTTATTTCAAGAGTTTA+TGG + chr2_1:7109786-7109805 Msa0191470:intron 20.0%
!!! ATATGACATGTTTTAACAAT+AGG + chr2_1:7109819-7109838 Msa0191470:intron 20.0%
!! ATTGTTTATCAATTAAACAC+CGG - chr2_1:7110132-7110151 None:intergenic 20.0%
!! AAGTATAGTTAATAAGAAAC+AGG - chr2_1:7110618-7110637 None:intergenic 20.0%
!! AGTATACTGATAAGTATAAA+AGG + chr2_1:7111220-7111239 Msa0191470:intron 20.0%
!!! CTTGCAATTTTTAAATTTGT+TGG - chr2_1:7111816-7111835 None:intergenic 20.0%
!! TTCTTTATTGTCAAATTGTT+TGG + chr2_1:7112000-7112019 Msa0191470:intron 20.0%
!! ATTCCTTAATATCTATAGTT+AGG + chr2_1:7112086-7112105 Msa0191470:intron 20.0%
!!! TTTTATATAATAGAAGTCGA+AGG + chr2_1:7112184-7112203 Msa0191470:intron 20.0%
!! TTTATATAATAGAAGTCGAA+GGG + chr2_1:7112185-7112204 Msa0191470:intron 20.0%
!! AGAGAAACCAAAAAATTATA+TGG - chr2_1:7112431-7112450 None:intergenic 20.0%
!! TTTCTCTTAAAATCAGTTTA+TGG + chr2_1:7112444-7112463 Msa0191470:intron 20.0%
!! TTCTTTATTGCTTATACATA+TGG + chr2_1:7113011-7113030 Msa0191470:intron 20.0%
!!! AGACTTTGTTTTTAAAACAA+TGG + chr2_1:7113082-7113101 Msa0191470:intron 20.0%
!!! GACTTTGTTTTTAAAACAAT+GGG + chr2_1:7113083-7113102 Msa0191470:intron 20.0%
!!! ACTTTGTTTTTAAAACAATG+GGG + chr2_1:7113084-7113103 Msa0191470:intron 20.0%
!! TATTTGTAACACAATTTCTA+TGG - chr2_1:7114042-7114061 None:intergenic 20.0%
!! GAAATAGAAACAAAAAATCT+CGG - chr2_1:7114070-7114089 None:intergenic 20.0%
! AAAATAGGAGTTTAGACTTT+AGG - chr2_1:7108810-7108829 None:intergenic 25.0%
! AAAGAATGAAGAAGTTGTTA+TGG - chr2_1:7108905-7108924 None:intergenic 25.0%
!!! ATTTTAAGATGGTTTCAACT+TGG + chr2_1:7109248-7109267 Msa0191470:intron 25.0%
! TAAAACATATGTGTTAGATG+CGG - chr2_1:7109569-7109588 None:intergenic 25.0%
! AAAAAAATTCAGAATTCTGG+AGG + chr2_1:7109588-7109607 Msa0191470:intron 25.0%
! AGGTATACAATGAAATCTTA+TGG + chr2_1:7109902-7109921 Msa0191470:intron 25.0%
!!! TATTGTTTTATGCTGTATGT+TGG + chr2_1:7109940-7109959 Msa0191470:intron 25.0%
! GTGTGTGAAAATTATATCAT+GGG - chr2_1:7109987-7110006 None:intergenic 25.0%
! AGTGTGTGAAAATTATATCA+TGG - chr2_1:7109988-7110007 None:intergenic 25.0%
! CTACACACAAAAAAAAATCT+GGG - chr2_1:7110094-7110113 None:intergenic 25.0%
! TCTACACACAAAAAAAAATC+TGG - chr2_1:7110095-7110114 None:intergenic 25.0%
!!! ATATTGACTTATAGCATGTT+TGG + chr2_1:7110154-7110173 Msa0191470:intron 25.0%
! TTGTTAGTTAATAGACTGTT+TGG - chr2_1:7110294-7110313 None:intergenic 25.0%
! GTAAACTTAATCACAGATAT+AGG - chr2_1:7110700-7110719 None:intergenic 25.0%
! TTGAATAAAACTACTACTTG+AGG + chr2_1:7110768-7110787 Msa0191470:intron 25.0%
!!! ACACTGTTTTGATTTGAATT+TGG + chr2_1:7111370-7111389 Msa0191470:intron 25.0%
! ATCTATAACGAATATTCAAC+AGG + chr2_1:7111409-7111428 Msa0191470:intron 25.0%
! TGTAATATGATACAATCCAT+TGG + chr2_1:7111464-7111483 Msa0191470:intron 25.0%
! ATGATAGATTATATGATGCA+GGG + chr2_1:7111499-7111518 Msa0191470:intron 25.0%
! TTTATTGTCAAATTGTTTGG+AGG + chr2_1:7112003-7112022 Msa0191470:intron 25.0%
! GTACCTAACTATAGATATTA+AGG - chr2_1:7112092-7112111 None:intergenic 25.0%
! TCAAATCCTTCTTAATGTTT+CGG - chr2_1:7112285-7112304 None:intergenic 25.0%
! ATTTAATTAGTCGTCGTTAT+TGG + chr2_1:7112305-7112324 Msa0191470:intron 25.0%
!! TTGTTTTCTGATAGAATCTT+TGG + chr2_1:7112401-7112420 Msa0191470:intron 25.0%
!!! TGGTCTTCCATATAATTTTT+TGG + chr2_1:7112421-7112440 Msa0191470:intron 25.0%
!! TCTTGAAATTTTGCATTTGT+TGG + chr2_1:7112471-7112490 Msa0191470:intron 25.0%
!!! TTAGCTTTGTTTTGCATATT+GGG + chr2_1:7112831-7112850 Msa0191470:intron 25.0%
!!! GATTTTCCTTTGAAAACTAT+AGG - chr2_1:7112934-7112953 None:intergenic 25.0%
! AATTAAATTTCTCAATCTCC+AGG - chr2_1:7113051-7113070 None:intergenic 25.0%
!!! TGTTTTAAAAACAAAGTCTG+TGG - chr2_1:7113081-7113100 None:intergenic 25.0%
! CTTAATTATCTACATATCCT+AGG - chr2_1:7113228-7113247 None:intergenic 25.0%
!! ATTGGTGACTATACTATTAT+TGG + chr2_1:7113453-7113472 Msa0191470:CDS 25.0%
!! TTGGTGACTATACTATTATT+GGG + chr2_1:7113454-7113473 Msa0191470:CDS 25.0%
! ACAAGAATAGTAAATACTTC+AGG - chr2_1:7113494-7113513 None:intergenic 25.0%
! TCGTGTGAAAAATTATAAAC+TGG - chr2_1:7113581-7113600 None:intergenic 25.0%
! TATACCATTTATCAGTTGTT+TGG - chr2_1:7113664-7113683 None:intergenic 25.0%
!! TTGTAGATTTTCTACTTCAT+TGG + chr2_1:7113700-7113719 Msa0191470:intron 25.0%
!! ATTTTCTACTTCATTGGATT+TGG + chr2_1:7113706-7113725 Msa0191470:CDS 25.0%
! ATTAACAAACCACATATAAC+AGG - chr2_1:7114109-7114128 None:intergenic 25.0%
! AAATGTAGACATTAAGTGAT+TGG + chr2_1:7114145-7114164 Msa0191470:three_prime_UTR 25.0%
TCTTATGCAAGAGAACAAAA+TGG - chr2_1:7108856-7108875 None:intergenic 30.0%
ATGAAGAAGTTGTTATGGTA+AGG - chr2_1:7108900-7108919 None:intergenic 30.0%
AAATGGTCTATCATTGAACA+TGG - chr2_1:7109416-7109435 None:intergenic 30.0%
GTTCAATGATAGACCATTTA+AGG + chr2_1:7109417-7109436 Msa0191470:intron 30.0%
GAATCTAACAAGTCCTTAAA+TGG - chr2_1:7109433-7109452 None:intergenic 30.0%
ACATTCATGATGCATCATTA+TGG + chr2_1:7109469-7109488 Msa0191470:intron 30.0%
!!! ATGGTGTCTTTTGGTTTATA+TGG + chr2_1:7109488-7109507 Msa0191470:intron 30.0%
ACTTTGTAAATGAATCAGAG+CGG - chr2_1:7109520-7109539 None:intergenic 30.0%
AAAACATATGTGTTAGATGC+GGG - chr2_1:7109568-7109587 None:intergenic 30.0%
! CAGATTACAACTATGGTTTT+GGG + chr2_1:7109661-7109680 Msa0191470:CDS 30.0%
ACAATAGGATGTGAAAAAGA+AGG + chr2_1:7109834-7109853 Msa0191470:intron 30.0%
AAACAATATTGTGAACCTAG+AGG - chr2_1:7109928-7109947 None:intergenic 30.0%
TTATATCATGGGCAAAGATA+AGG - chr2_1:7109976-7109995 None:intergenic 30.0%
! TACCATGAAATTTTTAACCC+AGG + chr2_1:7110007-7110026 Msa0191470:intron 30.0%
TTCCTGGGTTAAAAATTTCA+TGG - chr2_1:7110012-7110031 None:intergenic 30.0%
! CTGTAAATACAAGTTTTCCT+GGG - chr2_1:7110027-7110046 None:intergenic 30.0%
! ACTGTAAATACAAGTTTTCC+TGG - chr2_1:7110028-7110047 None:intergenic 30.0%
AGGAAAACTTGTATTTACAG+TGG + chr2_1:7110027-7110046 Msa0191470:intron 30.0%
!!! ATACTAGCTTCTTGTTTTCA+CGG - chr2_1:7110224-7110243 None:intergenic 30.0%
! TTCTAAAAAATGCACGTCTA+GGG + chr2_1:7110251-7110270 Msa0191470:intron 30.0%
TTAGTTCAAATTAACCAGCT+AGG - chr2_1:7110317-7110336 None:intergenic 30.0%
AACTATACTTGTCAAAATGC+AGG + chr2_1:7110628-7110647 Msa0191470:intron 30.0%
GTTTACTTATTTCCCTTAGT+TGG + chr2_1:7110714-7110733 Msa0191470:intron 30.0%
! TGATGGATAATTGGGAAAAA+TGG - chr2_1:7110990-7111009 None:intergenic 30.0%
!! CGATATCATGATGGATAATT+GGG - chr2_1:7110998-7111017 None:intergenic 30.0%
CAACATATTGAAGTCTTTGA+AGG - chr2_1:7111040-7111059 None:intergenic 30.0%
!!! GTTGCATTTTTTTCGTTGTT+AGG + chr2_1:7111056-7111075 Msa0191470:CDS 30.0%
!!! AACAAGAGGTTGCTTTTAAT+TGG + chr2_1:7111173-7111192 Msa0191470:intron 30.0%
! TCATTTATATATTTGGGGTG+TGG - chr2_1:7111267-7111286 None:intergenic 30.0%
TGATGAACACATTCTCTATT+TGG + chr2_1:7111321-7111340 Msa0191470:intron 30.0%
!!! CTATTTGGTTTTTCTTAGCT+TGG + chr2_1:7111336-7111355 Msa0191470:intron 30.0%
GATGATAGATTATATGATGC+AGG + chr2_1:7111498-7111517 Msa0191470:intron 30.0%
!! TTTAGAAATGGGTTATCGAA+TGG + chr2_1:7111588-7111607 Msa0191470:intron 30.0%
ATCTGATTCAACAGATTCAA+TGG + chr2_1:7111623-7111642 Msa0191470:intron 30.0%
CTGTTACAGGTGTAAAAATA+TGG + chr2_1:7111665-7111684 Msa0191470:intron 30.0%
GATATAATGGTTTATACCAC+AGG - chr2_1:7111738-7111757 None:intergenic 30.0%
AACCATTATATCGTGCATTT+AGG + chr2_1:7111746-7111765 Msa0191470:CDS 30.0%
TACCTAAATGCACGATATAA+TGG - chr2_1:7111751-7111770 None:intergenic 30.0%
TGGTAAGGATAAAAATTGCA+AGG - chr2_1:7111966-7111985 None:intergenic 30.0%
AAAGAAAAACCTCTCTCATT+TGG - chr2_1:7111986-7112005 None:intergenic 30.0%
TTATCTAAATCCCAACAACT+GGG - chr2_1:7112254-7112273 None:intergenic 30.0%
! GAAGTATTATTTATCAGCCT+GGG - chr2_1:7112547-7112566 None:intergenic 30.0%
!! AGAAGTATTATTTATCAGCC+TGG - chr2_1:7112548-7112567 None:intergenic 30.0%
AGGCTGATAAATAATACTTC+TGG + chr2_1:7112547-7112566 Msa0191470:intron 30.0%
TATGGATACATGTTACGTTA+CGG + chr2_1:7112596-7112615 Msa0191470:intron 30.0%
TCCAAATTTAATAGCACTGT+CGG - chr2_1:7112762-7112781 None:intergenic 30.0%
! ACAGTGCTATTAAATTTGGA+TGG + chr2_1:7112762-7112781 Msa0191470:CDS 30.0%
!!! ATGGTTTTTTCTGTTTTACC+TGG + chr2_1:7112781-7112800 Msa0191470:CDS 30.0%
AGCAAAATAGTCAATTTACC+AGG - chr2_1:7112802-7112821 None:intergenic 30.0%
!!! GTTAGCTTTGTTTTGCATAT+TGG + chr2_1:7112830-7112849 Msa0191470:intron 30.0%
TGTAAGCAGAAAAAGAAATG+AGG - chr2_1:7112871-7112890 None:intergenic 30.0%
! TTCCTTTGAAAACTATAGGA+GGG - chr2_1:7112930-7112949 None:intergenic 30.0%
! TTTCCTTTGAAAACTATAGG+AGG - chr2_1:7112931-7112950 None:intergenic 30.0%
ATGTACTTTCGAACCAAATA+GGG - chr2_1:7113131-7113150 None:intergenic 30.0%
AATGTACTTTCGAACCAAAT+AGG - chr2_1:7113132-7113151 None:intergenic 30.0%
TCTTCTTTCACTTCTATTCT+AGG - chr2_1:7113166-7113185 None:intergenic 30.0%
TTTGACATGAATTTGAACCT+AGG + chr2_1:7113208-7113227 Msa0191470:intron 30.0%
TGGTAAAAGTGGTAAAATCT+AGG + chr2_1:7113326-7113345 Msa0191470:intron 30.0%
CAAAAAATGAGAATAACACG+AGG - chr2_1:7113377-7113396 None:intergenic 30.0%
!!! CTCGTGTTATTCTCATTTTT+TGG + chr2_1:7113375-7113394 Msa0191470:intron 30.0%
! GATGTTTTCTCATTGATACA+GGG + chr2_1:7113407-7113426 Msa0191470:intron 30.0%
! ATGTTTTCTCATTGATACAG+GGG + chr2_1:7113408-7113427 Msa0191470:intron 30.0%
TGGTGACTATACTATTATTG+GGG + chr2_1:7113455-7113474 Msa0191470:CDS 30.0%
AATAGTAAATACTTCAGGAC+AGG - chr2_1:7113489-7113508 None:intergenic 30.0%
TTTGCGTTAGAACTATAATG+TGG - chr2_1:7113605-7113624 None:intergenic 30.0%
! CAGAAAACTTTTCATTGCTT+AGG - chr2_1:7113638-7113657 None:intergenic 30.0%
GTAGAAAATCTACAAGCAAA+TGG - chr2_1:7113695-7113714 None:intergenic 30.0%
ATTGTTCTGTCTTGAAACAT+TGG + chr2_1:7113729-7113748 Msa0191470:CDS 30.0%
! TTGAAAAGTACAATCAAACC+TGG - chr2_1:7113771-7113790 None:intergenic 30.0%
ACAAAAGCAAAGAAGTTAAC+AGG - chr2_1:7113863-7113882 None:intergenic 30.0%
ACATTTATATTGCCTTCAGA+AGG - chr2_1:7113989-7114008 None:intergenic 30.0%
! CTATATGTCACCTTTTCTTT+TGG + chr2_1:7114222-7114241 Msa0191470:three_prime_UTR 30.0%
! AAGGGTCCTTTCTTTACTTT+TGG - chr2_1:7108780-7108799 None:intergenic 35.0%
!! TGCTTGTTTCTATCATCTCA+TGG + chr2_1:7108971-7108990 Msa0191470:exon 35.0%
!! AAGAGGTACTTACAGCAAAA+GGG - chr2_1:7109040-7109059 None:intergenic 35.0%
!! AAAGAGGTACTTACAGCAAA+AGG - chr2_1:7109041-7109060 None:intergenic 35.0%
!!! TTTTGGGTTTGCAATTCTTG+TGG + chr2_1:7109164-7109183 Msa0191470:intron 35.0%
TAAGTGTAATCACATGTGTC+TGG + chr2_1:7109366-7109385 Msa0191470:intron 35.0%
AAGTGTAATCACATGTGTCT+GGG + chr2_1:7109367-7109386 Msa0191470:intron 35.0%
GTCTATCATTGAACATGGTT+CGG - chr2_1:7109411-7109430 None:intergenic 35.0%
! TGCATCATTATGGTGTCTTT+TGG + chr2_1:7109479-7109498 Msa0191470:intron 35.0%
CTTTGTAAATGAATCAGAGC+GGG - chr2_1:7109519-7109538 None:intergenic 35.0%
! GCAGATTACAACTATGGTTT+TGG + chr2_1:7109660-7109679 Msa0191470:CDS 35.0%
TATACCTCTTGATGCATCAA+CGG + chr2_1:7109695-7109714 Msa0191470:CDS 35.0%
TGAATTGAGAAAACGAGAAC+AGG + chr2_1:7109882-7109901 Msa0191470:CDS 35.0%
AATGAAATCTTATGGCCTCT+AGG + chr2_1:7109910-7109929 Msa0191470:intron 35.0%
ATGGGCAAAGATAAGGAAAA+AGG - chr2_1:7109969-7109988 None:intergenic 35.0%
TATCAATTAAACACCGGTCT+AGG - chr2_1:7110126-7110145 None:intergenic 35.0%
!!! TTCTTGTTTTCACGGCAAAA+TGG - chr2_1:7110216-7110235 None:intergenic 35.0%
! CTTCTAAAAAATGCACGTCT+AGG + chr2_1:7110250-7110269 Msa0191470:intron 35.0%
CTATTAACTAACAACCTAGC+TGG + chr2_1:7110300-7110319 Msa0191470:intron 35.0%
CTGAAATTGCTGTGATTAGA+AGG + chr2_1:7110451-7110470 Msa0191470:intron 35.0%
TTAGAAGGTAGTTTGATCTC+TGG + chr2_1:7110466-7110485 Msa0191470:intron 35.0%
GTGTTATCCTCTATAGATCT+TGG + chr2_1:7110511-7110530 Msa0191470:intron 35.0%
TAATAAGAAACAGGCAGTCA+GGG - chr2_1:7110609-7110628 None:intergenic 35.0%
TTAATAAGAAACAGGCAGTC+AGG - chr2_1:7110610-7110629 None:intergenic 35.0%
TCAAAATGCAGGAAGTAAGA+CGG + chr2_1:7110639-7110658 Msa0191470:intron 35.0%
ACATAAACTACCTCGTGAAA+TGG - chr2_1:7110675-7110694 None:intergenic 35.0%
CACAAACAAAGACCAACTAA+GGG - chr2_1:7110729-7110748 None:intergenic 35.0%
ACACAAACAAAGACCAACTA+AGG - chr2_1:7110730-7110749 None:intergenic 35.0%
TTGTTATCGAGGAGAAGAAT+TGG + chr2_1:7110961-7110980 Msa0191470:CDS 35.0%
TGGATAATTGGGAAAAATGG+TGG - chr2_1:7110987-7111006 None:intergenic 35.0%
!! GCGATATCATGATGGATAAT+TGG - chr2_1:7110999-7111018 None:intergenic 35.0%
TTTCATTCGCGATATCATGA+TGG - chr2_1:7111007-7111026 None:intergenic 35.0%
GCACTCAATAAGTAAACAAG+AGG + chr2_1:7111159-7111178 Msa0191470:intron 35.0%
!! TTGCTTTTAATTGGCGTCAA+TGG + chr2_1:7111182-7111201 Msa0191470:intron 35.0%
!!! CCTTGTTTTGTTGAATCTGT+CGG + chr2_1:7111293-7111312 Msa0191470:intron 35.0%
ATACAATCCATTGGCAATGA+TGG + chr2_1:7111473-7111492 Msa0191470:intron 35.0%
GAGAAGGTCAGTTTAGAAAT+GGG + chr2_1:7111577-7111596 Msa0191470:intron 35.0%
TTTACACCTGTAACAGACAA+GGG - chr2_1:7111661-7111680 None:intergenic 35.0%
! TTTTACACCTGTAACAGACA+AGG - chr2_1:7111662-7111681 None:intergenic 35.0%
CCATTATCTACTTCATAGCA+GGG + chr2_1:7111695-7111714 Msa0191470:CDS 35.0%
CATTATCTACTTCATAGCAG+GGG + chr2_1:7111696-7111715 Msa0191470:CDS 35.0%
! GACCAGAATTTTGTCATGTT+TGG + chr2_1:7111875-7111894 Msa0191470:intron 35.0%
CACCAAACATGACAAAATTC+TGG - chr2_1:7111880-7111899 None:intergenic 35.0%
TTATCCTTACCAAATGAGAG+AGG + chr2_1:7111974-7111993 Msa0191470:intron 35.0%
AAAACCTCTCTCATTTGGTA+AGG - chr2_1:7111981-7112000 None:intergenic 35.0%
GTTAGTTAGATTAGAACACC+TGG + chr2_1:7112127-7112146 Msa0191470:intron 35.0%
GTTATCTAAATCCCAACAAC+TGG - chr2_1:7112255-7112274 None:intergenic 35.0%
TTTGTGCCGAAACATTAAGA+AGG + chr2_1:7112276-7112295 Msa0191470:intron 35.0%
!! AACAAAAGCCATTTTCCGTT+AGG - chr2_1:7112354-7112373 None:intergenic 35.0%
ATATCGTGACTAGATAGATG+GGG - chr2_1:7112497-7112516 None:intergenic 35.0%
GATATCGTGACTAGATAGAT+GGG - chr2_1:7112498-7112517 None:intergenic 35.0%
CAGAAAAATCAGCATGTCAA+TGG - chr2_1:7112694-7112713 None:intergenic 35.0%
! TTCTGATTTGATCTTGATCG+TGG + chr2_1:7112709-7112728 Msa0191470:intron 35.0%
!!! TGTTGCTTTGTTACTTTTGC+AGG + chr2_1:7112735-7112754 Msa0191470:intron 35.0%
! ACCGACAGTGCTATTAAATT+TGG + chr2_1:7112758-7112777 Msa0191470:CDS 35.0%
! TCCTTTGAAAACTATAGGAG+GGG - chr2_1:7112929-7112948 None:intergenic 35.0%
AATGAAGTCAACTTACGTCA+AGG - chr2_1:7112956-7112975 None:intergenic 35.0%
CAACAGTAGCATGTTAAATG+AGG - chr2_1:7112987-7113006 None:intergenic 35.0%
!! ATGGCTTTATATGTATAGCC+TGG + chr2_1:7113030-7113049 Msa0191470:intron 35.0%
ATCATGTAATACTTCAGCTC+AGG - chr2_1:7113269-7113288 None:intergenic 35.0%
! CGATGTTTTCTCATTGATAC+AGG + chr2_1:7113406-7113425 Msa0191470:intron 35.0%
ATAGTCACCAATCACATCTA+TGG - chr2_1:7113445-7113464 None:intergenic 35.0%
! CGAACATTTCCAATTTGCTT+AGG + chr2_1:7113536-7113555 Msa0191470:intron 35.0%
! ACATTTCCAATTTGCTTAGG+CGG + chr2_1:7113539-7113558 Msa0191470:intron 35.0%
ATAAAACCGCCTAAGCAAAT+TGG - chr2_1:7113548-7113567 None:intergenic 35.0%
GCTTCCAAACAACTGATAAA+TGG + chr2_1:7113657-7113676 Msa0191470:intron 35.0%
! AACAGGTTACAGGTACTTTT+TGG - chr2_1:7113846-7113865 None:intergenic 35.0%
CAAAGAAGTTAACAGGTTAC+AGG - chr2_1:7113856-7113875 None:intergenic 35.0%
CAAGTATATATGTACTTCCG+TGG + chr2_1:7113892-7113911 Msa0191470:CDS 35.0%
AACATGCTACCTGTTATATG+TGG + chr2_1:7114097-7114116 Msa0191470:three_prime_UTR 35.0%
!! TAGACTTTAGGACACAGGAA+GGG - chr2_1:7108798-7108817 None:intergenic 40.0%
!! TTAGACTTTAGGACACAGGA+AGG - chr2_1:7108799-7108818 None:intergenic 40.0%
!! GAGTTTAGACTTTAGGACAC+AGG - chr2_1:7108803-7108822 None:intergenic 40.0%
GAATACAAGAAAGGGGCTTT+GGG - chr2_1:7108938-7108957 None:intergenic 40.0%
AGAATACAAGAAAGGGGCTT+TGG - chr2_1:7108939-7108958 None:intergenic 40.0%
CAGAGGAGAATACAAGAAAG+GGG - chr2_1:7108945-7108964 None:intergenic 40.0%
GCAGAGGAGAATACAAGAAA+GGG - chr2_1:7108946-7108965 None:intergenic 40.0%
AGCAGAGGAGAATACAAGAA+AGG - chr2_1:7108947-7108966 None:intergenic 40.0%
! TGTTTCTATCATCTCATGGC+CGG + chr2_1:7108975-7108994 Msa0191470:exon 40.0%
!! TTGACTTGTTCTTCGTCGAA+GGG - chr2_1:7109017-7109036 None:intergenic 40.0%
ACTGCTTACTATGTTTCAGC+TGG + chr2_1:7109207-7109226 Msa0191470:intron 40.0%
TTTGAATCCAACTCCATCAG+AGG + chr2_1:7109296-7109315 Msa0191470:intron 40.0%
TTGAATCCAACTCCATCAGA+GGG + chr2_1:7109297-7109316 Msa0191470:intron 40.0%
AGTGTAATCACATGTGTCTG+GGG + chr2_1:7109368-7109387 Msa0191470:intron 40.0%
! TAAATGAATCAGAGCGGGTT+TGG - chr2_1:7109514-7109533 None:intergenic 40.0%
TAGTTGTAATCTGCACGTTC+AGG - chr2_1:7109654-7109673 None:intergenic 40.0%
GAACGTGCAGATTACAACTA+TGG + chr2_1:7109654-7109673 Msa0191470:CDS 40.0%
! TTTTCTCAATTCAGCCTCCT+TGG - chr2_1:7109875-7109894 None:intergenic 40.0%
GTAGAAACAACTACCTAGAC+CGG + chr2_1:7110110-7110129 Msa0191470:intron 40.0%
GAAGACACCAAGATCTATAG+AGG - chr2_1:7110521-7110540 None:intergenic 40.0%
AAAGAAGAAGCCATTTCACG+AGG + chr2_1:7110662-7110681 Msa0191470:CDS 40.0%
CATGTGTAGAATGAGTCGAT+TGG - chr2_1:7110827-7110846 None:intergenic 40.0%
AACAGAGCGATTACATGTCA+AGG - chr2_1:7110929-7110948 None:intergenic 40.0%
! TGAAGTCTTTGAAGGTGAAC+TGG - chr2_1:7111032-7111051 None:intergenic 40.0%
CCGACAGATTCAACAAAACA+AGG - chr2_1:7111296-7111315 None:intergenic 40.0%
!! TGTTTTGTTGAATCTGTCGG+TGG + chr2_1:7111296-7111315 Msa0191470:intron 40.0%
TCATCAACCATCATTGCCAA+TGG - chr2_1:7111483-7111502 None:intergenic 40.0%
CAGCTACAACATTCCATGTA+AGG - chr2_1:7111536-7111555 None:intergenic 40.0%
TTCTCCTTTAATCCAAGCTG+CGG - chr2_1:7111562-7111581 None:intergenic 40.0%
GGAGAAGGTCAGTTTAGAAA+TGG + chr2_1:7111576-7111595 Msa0191470:intron 40.0%
GCCATTATCTACTTCATAGC+AGG + chr2_1:7111694-7111713 Msa0191470:CDS 40.0%
CCCTGCTATGAAGTAGATAA+TGG - chr2_1:7111698-7111717 None:intergenic 40.0%
GAACACCTGGTTAAATAGAG+AGG + chr2_1:7112140-7112159 Msa0191470:intron 40.0%
ACCTGGTTAAATAGAGAGGT+TGG + chr2_1:7112144-7112163 Msa0191470:intron 40.0%
TCCAACCTCTCTATTTAACC+AGG - chr2_1:7112148-7112167 None:intergenic 40.0%
GGTTAAATAGAGAGGTTGGA+AGG + chr2_1:7112148-7112167 Msa0191470:intron 40.0%
ATAATAGAAGTCGAAGGGAG+CGG + chr2_1:7112190-7112209 Msa0191470:intron 40.0%
!! AAAAGCCATTTTCCGTTAGG+TGG - chr2_1:7112351-7112370 None:intergenic 40.0%
GGATATCGTGACTAGATAGA+TGG - chr2_1:7112499-7112518 None:intergenic 40.0%
TCAACAAGGTCACTAGCTAA+GGG - chr2_1:7112520-7112539 None:intergenic 40.0%
TTCAACAAGGTCACTAGCTA+AGG - chr2_1:7112521-7112540 None:intergenic 40.0%
TGCACAATCTTGCTACATCA+GGG - chr2_1:7112666-7112685 None:intergenic 40.0%
ATGCACAATCTTGCTACATC+AGG - chr2_1:7112667-7112686 None:intergenic 40.0%
AAAATCAGCATGTCAATGGC+TGG - chr2_1:7112690-7112709 None:intergenic 40.0%
ACCAAATAGGGTTGAGTACA+TGG - chr2_1:7113119-7113138 None:intergenic 40.0%
AGTTAGACTGATGCACATGT+TGG + chr2_1:7113306-7113325 Msa0191470:intron 40.0%
! GATGCACATGTTGGTAAAAG+TGG + chr2_1:7113315-7113334 Msa0191470:intron 40.0%
GTATATATGTACTTCCGTGG+CGG + chr2_1:7113895-7113914 Msa0191470:CDS 40.0%
TAAGACTGCTGAGATGAAGA+GGG + chr2_1:7113921-7113940 Msa0191470:CDS 40.0%
AGAAACAAGCAAGCAAGCAG+AGG - chr2_1:7108962-7108981 None:intergenic 45.0%
!! TGACTTGTTCTTCGTCGAAG+GGG - chr2_1:7109016-7109035 None:intergenic 45.0%
!! GTTGACTTGTTCTTCGTCGA+AGG - chr2_1:7109018-7109037 None:intergenic 45.0%
GTGTAATCACATGTGTCTGG+GGG + chr2_1:7109369-7109388 Msa0191470:intron 45.0%
! TCATTGAACATGGTTCGGCT+TGG - chr2_1:7109406-7109425 None:intergenic 45.0%
! AGGTCTAGAATTTGTGGCAG+GGG - chr2_1:7109619-7109638 None:intergenic 45.0%
! CAGGTCTAGAATTTGTGGCA+GGG - chr2_1:7109620-7109639 None:intergenic 45.0%
! AGGTGCAGGTCTAGAATTTG+TGG - chr2_1:7109625-7109644 None:intergenic 45.0%
TCTGCACGTTCAGGATTAAG+AGG - chr2_1:7109645-7109664 None:intergenic 45.0%
CATACCGTTGATGCATCAAG+AGG - chr2_1:7109702-7109721 None:intergenic 45.0%
AAAATGCACGTCTAGGGACT+TGG + chr2_1:7110257-7110276 Msa0191470:intron 45.0%
! TAATCGCTCTGTTTTGCAGC+TGG + chr2_1:7110936-7110955 Msa0191470:intron 45.0%
TGCAGCTGGAATTGTTATCG+AGG + chr2_1:7110950-7110969 Msa0191470:intron 45.0%
CCACGAGAAGAAAACAAGAC+AGG - chr2_1:7111090-7111109 None:intergenic 45.0%
!!! CCTGTCTTGTTTTCTTCTCG+TGG + chr2_1:7111087-7111106 Msa0191470:intron 45.0%
CAAACCAATAACCATCCCCA+CGG - chr2_1:7111113-7111132 None:intergenic 45.0%
GGTTAGTGTTGTGCCTTACA+TGG + chr2_1:7111520-7111539 Msa0191470:CDS 45.0%
GCAGCTTGGATTAAAGGAGA+AGG + chr2_1:7111561-7111580 Msa0191470:CDS 45.0%
TGATAGCCAACTCCACCTAA+CGG + chr2_1:7112336-7112355 Msa0191470:intron 45.0%
! CATTTTCCGTTAGGTGGAGT+TGG - chr2_1:7112345-7112364 None:intergenic 45.0%
CAACTCCACCTAACGGAAAA+TGG + chr2_1:7112343-7112362 Msa0191470:intron 45.0%
TTCTGCTTACAGCTTCACCT+TGG + chr2_1:7112880-7112899 Msa0191470:intron 45.0%
TCTGCTTACAGCTTCACCTT+GGG + chr2_1:7112881-7112900 Msa0191470:intron 45.0%
CAGCTAAGATACAGAACCCA+AGG - chr2_1:7112900-7112919 None:intergenic 45.0%
! GCCCCTCCTATAGTTTTCAA+AGG + chr2_1:7112925-7112944 Msa0191470:CDS 45.0%
GCCATGTACTCAACCCTATT+TGG + chr2_1:7113115-7113134 Msa0191470:intron 45.0%
CTGTCAGCCATAGATGTGAT+TGG + chr2_1:7113435-7113454 Msa0191470:CDS 45.0%
TTGAAACATTGGTCAGCGTC+TGG + chr2_1:7113740-7113759 Msa0191470:CDS 45.0%
TGAAACATTGGTCAGCGTCT+GGG + chr2_1:7113741-7113760 Msa0191470:CDS 45.0%
GTAAGACTGCTGAGATGAAG+AGG + chr2_1:7113920-7113939 Msa0191470:CDS 45.0%
! TACGATGAAGCACCTTCTGA+AGG + chr2_1:7113974-7113993 Msa0191470:exon 45.0%
!! AGAAAGGGGCTTTGGGACTT+TGG - chr2_1:7108931-7108950 None:intergenic 50.0%
AACTAAGCTGCTCCCTCTGA+TGG - chr2_1:7109312-7109331 None:intergenic 50.0%
CAGAGGGAGCAGCTTAGTTA+TGG + chr2_1:7109313-7109332 Msa0191470:intron 50.0%
!! ACATGGTTCGGCTTGGATCA+CGG - chr2_1:7109399-7109418 None:intergenic 50.0%
! GCAGGTCTAGAATTTGTGGC+AGG - chr2_1:7109621-7109640 None:intergenic 50.0%
! CGTTCAGGATTAAGAGGTGC+AGG - chr2_1:7109639-7109658 None:intergenic 50.0%
GGAAAGAGAACTCCAAGCCA+AGG + chr2_1:7109855-7109874 Msa0191470:CDS 50.0%
AAGAGAACTCCAAGCCAAGG+AGG + chr2_1:7109858-7109877 Msa0191470:CDS 50.0%
TCAATTCAGCCTCCTTGGCT+TGG - chr2_1:7109870-7109889 None:intergenic 50.0%
! TTGTTTTCTTCTCGTGGCCG+TGG + chr2_1:7111093-7111112 Msa0191470:intron 50.0%
! TGTTTTCTTCTCGTGGCCGT+GGG + chr2_1:7111094-7111113 Msa0191470:intron 50.0%
GTCACCGCAGCTTGGATTAA+AGG + chr2_1:7111555-7111574 Msa0191470:CDS 50.0%
AACTCGCCCTTGTCTGTTAC+AGG + chr2_1:7111652-7111671 Msa0191470:intron 50.0%
TACTTCATAGCAGGGGTTCC+TGG + chr2_1:7111703-7111722 Msa0191470:CDS 50.0%
TTCCTGGAGCATATGTCCTG+TGG + chr2_1:7111719-7111738 Msa0191470:CDS 50.0%
TACCACAGGACATATGCTCC+AGG - chr2_1:7111724-7111743 None:intergenic 50.0%
TGAGCAGTGACCCAGTTGTT+GGG + chr2_1:7112241-7112260 Msa0191470:intron 50.0%
GTGACCTTGTTGAAATGCCC+AGG + chr2_1:7112527-7112546 Msa0191470:intron 50.0%
TCAGCCTGGGCATTTCAACA+AGG - chr2_1:7112534-7112553 None:intergenic 50.0%
CATGTTACGTTACGGTCTCG+CGG + chr2_1:7112604-7112623 Msa0191470:intron 50.0%
ATGTTACGTTACGGTCTCGC+GGG + chr2_1:7112605-7112624 Msa0191470:intron 50.0%
TACATCAGGGATCAAGCCCA+GGG - chr2_1:7112653-7112672 None:intergenic 50.0%
TATATGTACTTCCGTGGCGG+TGG + chr2_1:7113898-7113917 Msa0191470:CDS 50.0%
ATGAAGAGGGAAGCTGCACT+AGG + chr2_1:7113934-7113953 Msa0191470:CDS 50.0%
GAAGCTGCACTAGGAGCAAT+GGG + chr2_1:7113943-7113962 Msa0191470:CDS 50.0%
AAGCTGCACTAGGAGCAATG+GGG + chr2_1:7113944-7113963 Msa0191470:CDS 50.0%
GGGGTTACTGTCGTAACGAC+CGG - chr2_1:7108997-7109016 None:intergenic 55.0%
! GTTTTCTTCTCGTGGCCGTG+GGG + chr2_1:7111095-7111114 Msa0191470:intron 55.0%
AGTGCTACCTCGCTCTGTGT+GGG - chr2_1:7111144-7111163 None:intergenic 55.0%
TTGTAGCTGTCACCGCAGCT+TGG + chr2_1:7111547-7111566 Msa0191470:CDS 55.0%
CTGAGCAGTGACCCAGTTGT+TGG + chr2_1:7112240-7112259 Msa0191470:intron 55.0%
CTACATCAGGGATCAAGCCC+AGG - chr2_1:7112654-7112673 None:intergenic 55.0%
GGAAGCTGCACTAGGAGCAA+TGG + chr2_1:7113942-7113961 Msa0191470:CDS 55.0%
AGCTGCACTAGGAGCAATGG+GGG + chr2_1:7113945-7113964 Msa0191470:CDS 55.0%
GCTGCTCCCTCTGATGGAGT+TGG - chr2_1:7109306-7109325 None:intergenic 60.0%
TGACGCAGACGCGCATCTAG+TGG + chr2_1:7110190-7110209 Msa0191470:intron 60.0%
GTGGCCGTGGGGATGGTTAT+TGG + chr2_1:7111106-7111125 Msa0191470:intron 60.0%
TACCTCGCTCTGTGTGGGTG+CGG - chr2_1:7111139-7111158 None:intergenic 60.0%
GAGTGCTACCTCGCTCTGTG+TGG - chr2_1:7111145-7111164 None:intergenic 60.0%
TCAGGGATCAAGCCCAGGGA+GGG - chr2_1:7112649-7112668 None:intergenic 60.0%
ATCAGGGATCAAGCCCAGGG+AGG - chr2_1:7112650-7112669 None:intergenic 60.0%
GGTCAGCGTCTGGGTTATCC+AGG + chr2_1:7113750-7113769 Msa0191470:CDS 60.0%
CAGCAGTCTTACCACCGCCA+CGG - chr2_1:7113912-7113931 None:intergenic 60.0%
TCTTCTCGTGGCCGTGGGGA+TGG + chr2_1:7111099-7111118 Msa0191470:intron 65.0%
ACCTCGCTCTGTGTGGGTGC+GGG - chr2_1:7111138-7111157 None:intergenic 65.0%
AGGGAGGGGAACACCAGAGG+GGG - chr2_1:7112634-7112653 None:intergenic 65.0%
CAGGGAGGGGAACACCAGAG+GGG - chr2_1:7112635-7112654 None:intergenic 65.0%
CCAGGGAGGGGAACACCAGA+GGG - chr2_1:7112636-7112655 None:intergenic 65.0%
CCTCTGGTGTTCCCCTCCCT+GGG + chr2_1:7112634-7112653 Msa0191470:intron 65.0%
CAGGGATCAAGCCCAGGGAG+GGG - chr2_1:7112648-7112667 None:intergenic 65.0%
CCCTCTGGTGTTCCCCTCCC+TGG + chr2_1:7112633-7112652 Msa0191470:intron 70.0%
CCCAGGGAGGGGAACACCAG+AGG - chr2_1:7112637-7112656 None:intergenic 70.0%
GCCCGCACCCACACAGAGCG+AGG + chr2_1:7111134-7111153 Msa0191470:intron 75.0%
GTCTCGCGGGTCACCCCCTC+TGG + chr2_1:7112618-7112637 Msa0191470:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 7108774 7114251 7108774 ID=Msa0191470;Name=Msa0191470
chr2_1 mRNA 7108774 7114251 7108774 ID=Msa0191470-mRNA-1;Parent=Msa0191470;Name=Msa0191470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=216|1|1|1|1|1|12|270|289
chr2_1 exon 7108774 7109046 7108774 ID=Msa0191470-mRNA-1:exon:3229;Parent=Msa0191470-mRNA-1
chr2_1 exon 7109600 7109716 7109600 ID=Msa0191470-mRNA-1:exon:3230;Parent=Msa0191470-mRNA-1
chr2_1 exon 7109841 7109903 7109841 ID=Msa0191470-mRNA-1:exon:3231;Parent=Msa0191470-mRNA-1
chr2_1 exon 7110650 7110683 7110650 ID=Msa0191470-mRNA-1:exon:3232;Parent=Msa0191470-mRNA-1
chr2_1 exon 7110955 7111077 7110955 ID=Msa0191470-mRNA-1:exon:3233;Parent=Msa0191470-mRNA-1
chr2_1 exon 7111520 7111582 7111520 ID=Msa0191470-mRNA-1:exon:3234;Parent=Msa0191470-mRNA-1
chr2_1 exon 7111674 7111767 7111674 ID=Msa0191470-mRNA-1:exon:3235;Parent=Msa0191470-mRNA-1
chr2_1 exon 7112757 7112802 7112757 ID=Msa0191470-mRNA-1:exon:3236;Parent=Msa0191470-mRNA-1
chr2_1 exon 7112892 7112959 7112892 ID=Msa0191470-mRNA-1:exon:3237;Parent=Msa0191470-mRNA-1
chr2_1 exon 7113428 7113476 7113428 ID=Msa0191470-mRNA-1:exon:3238;Parent=Msa0191470-mRNA-1
chr2_1 exon 7113706 7113771 7113706 ID=Msa0191470-mRNA-1:exon:3239;Parent=Msa0191470-mRNA-1
chr2_1 exon 7113892 7114251 7113892 ID=Msa0191470-mRNA-1:exon:3240;Parent=Msa0191470-mRNA-1
chr2_1 five_prime_UTR 7108774 7108989 7108774 ID=Msa0191470-mRNA-1:five_prime_utr;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7108990 7109046 7108990 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7109600 7109716 7109600 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7109841 7109903 7109841 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7110650 7110683 7110650 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7110955 7111077 7110955 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7111520 7111582 7111520 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7111674 7111767 7111674 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7112757 7112802 7112757 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7112892 7112959 7112892 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7113428 7113476 7113428 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7113706 7113771 7113706 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 CDS 7113892 7113981 7113892 ID=Msa0191470-mRNA-1:cds;Parent=Msa0191470-mRNA-1
chr2_1 three_prime_UTR 7113982 7114251 7113982 ID=Msa0191470-mRNA-1:three_prime_utr;Parent=Msa0191470-mRNA-1
Gene Sequence

>Msa0191470

ATGGCCGGTCGTTACGACAGTAACCCCTTCGACGAAGAACAAGTCAACCCTTTTGCTAATTCTGGAGGTGTTGCCCCTGCCACAAATTCTAGACCTGCACCTCTTAATCCTGAACGTGCAGATTACAACTATGGTTTTGGGCAGACAGTTGATATACCTCTTGATGCATCAACGGATGTGAAAAAGAAGGAAAGAGAACTCCAAGCCAAGGAGGCTGAATTGAGAAAACGAGAACAGGAAGTAAGACGGAAAGAAGAAGCCATTTCACGAGCTGGAATTGTTATCGAGGAGAAGAATTGGCCACCATTTTTCCCAATTATCCATCATGATATCGCGAATGAAATTCCAGTTCACCTTCAAAGACTTCAATATGTTGCATTTTTTTCGTTGTTAGGGTTAGTGTTGTGCCTTACATGGAATGTTGTAGCTGTCACCGCAGCTTGGATTAAAGGAGAAGGTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTTCCTGGAGCATATGTCCTGTGGTATAAACCATTATATCGTGCATTTAGGACCGACAGTGCTATTAAATTTGGATGGTTTTTTCTGTTTTACCTGCTTCACCTTGGGTTCTGTATCTTAGCTGCTGTTGCCCCTCCTATAGTTTTCAAAGGAAAATCCTTGACGGGCATTCTGTCAGCCATAGATGTGATTGGTGACTATACTATTATTGGGATTTTCTACTTCATTGGATTTGGATTGTTCTGTCTTGAAACATTGGTCAGCGTCTGGGTTATCCAGCAAGTATATATGTACTTCCGTGGCGGTGGTAAGACTGCTGAGATGAAGAGGGAAGCTGCACTAGGAGCAATGGGGGCTGCTCTACGATGA

Protein sequence

>Msa0191470

MAGRYDSNPFDEEQVNPFANSGGVAPATNSRPAPLNPERADYNYGFGQTVDIPLDASTDVKKKERELQAKEAELRKREQEVRRKEEAISRAGIVIEEKNWPPFFPIIHHDIANEIPVHLQRLQYVAFFSLLGLVLCLTWNVVAVTAAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYKPLYRAFRTDSAIKFGWFFLFYLLHLGFCILAAVAPPIVFKGKSLTGILSAIDVIGDYTIIGIFYFIGFGLFCLETLVSVWVIQQVYMYFRGGGKTAEMKREAALGAMGAALR*