Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930080 | XP_003631073.1 | 98.200 | 611 | 11 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930080 | sp|Q9LV35|AIP12_ARATH | 75.000 | 608 | 151 | 1 | 4 | 610 | 1 | 608 | 0.0 | 957 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614480 | Msa0930080 | 0.806730 | 7.137472e-50 | -8.615850e-47 |
| Msa0781800 | Msa0930080 | 0.811262 | 7.646374e-51 | -8.615850e-47 |
| Msa0575550 | Msa0930080 | 0.822074 | 2.877368e-53 | -8.615850e-47 |
| Msa0930080 | Msa1299200 | 0.805132 | 1.547333e-49 | -8.615850e-47 |
| Msa0930080 | Msa1304790 | 0.817235 | 3.663106e-52 | -8.615850e-47 |
| Msa0930080 | Msa1457080 | 0.962943 | 1.750809e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930080 | MtrunA17_Chr8g0392731 | 98.200 | 611 | 11 | 0 | 1 | 611 | 1 | 611 | 0.0 | 1226 |
| Msa0930080 | MtrunA17_Chr1g0208291 | 72.968 | 603 | 163 | 0 | 6 | 608 | 4 | 606 | 0.0 | 930 |
| Msa0930080 | MtrunA17_Chr1g0172501 | 25.581 | 301 | 201 | 9 | 61 | 357 | 274 | 555 | 9.00e-14 | 74.3 |
| Msa0930080 | MtrunA17_Chr3g0093681 | 25.249 | 301 | 202 | 9 | 61 | 357 | 274 | 555 | 4.44e-13 | 72.0 |
| Msa0930080 | MtrunA17_Chr1g0176241 | 37.273 | 110 | 61 | 3 | 158 | 264 | 337 | 441 | 1.07e-12 | 70.9 |
| Msa0930080 | MtrunA17_Chr3g0095501 | 24.302 | 358 | 216 | 13 | 179 | 531 | 259 | 566 | 1.04e-11 | 67.8 |
| Msa0930080 | MtrunA17_Chr5g0401671 | 23.237 | 241 | 162 | 8 | 53 | 284 | 341 | 567 | 2.97e-11 | 66.2 |
| Msa0930080 | MtrunA17_Chr1g0185501 | 22.989 | 348 | 211 | 13 | 179 | 520 | 16 | 312 | 6.83e-11 | 63.9 |
| Msa0930080 | MtrunA17_Chr4g0070791 | 27.854 | 219 | 133 | 8 | 66 | 265 | 109 | 321 | 8.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0930080 | AT3G18060.1 | 75.000 | 608 | 151 | 1 | 4 | 610 | 1 | 608 | 0.0 | 957 |
| Msa0930080 | AT2G01330.1 | 67.323 | 609 | 195 | 4 | 5 | 610 | 3 | 610 | 0.0 | 862 |
| Msa0930080 | AT5G52820.1 | 22.738 | 431 | 281 | 13 | 148 | 564 | 80 | 472 | 7.32e-13 | 71.6 |
| Msa0930080 | AT2G43770.1 | 26.174 | 298 | 199 | 10 | 58 | 348 | 52 | 335 | 8.76e-12 | 67.4 |
| Msa0930080 | AT5G67320.1 | 23.967 | 242 | 161 | 8 | 52 | 284 | 358 | 585 | 2.01e-11 | 67.4 |
| Msa0930080 | AT4G02730.1 | 24.138 | 348 | 203 | 12 | 51 | 392 | 35 | 327 | 6.33e-11 | 64.7 |
Find 190 sgRNAs with CRISPR-Local
Find 452 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCACTTAGGTGGGGTTTA+TGG | 0.082114 | 6_2:+78882620 | Msa0930080:CDS |
| AAGGAGTTTCGTGTTCTTTC+TGG | 0.134342 | 6_2:+78876569 | Msa0930080:CDS |
| CTGCACATATATTCTATTTC+TGG | 0.164431 | 6_2:+78881975 | Msa0930080:CDS |
| ACCTAAGTGAGCACCCTTTA+TGG | 0.179066 | 6_2:-78882609 | None:intergenic |
| AATCCCTGATGTTCTCATTT+TGG | 0.185647 | 6_2:+78883115 | Msa0930080:three_prime_UTR |
| CTCACTTAGGTGGGGTTTAT+GGG | 0.206529 | 6_2:+78882621 | Msa0930080:CDS |
| AACCGTTAGTTCTGACAAAA+AGG | 0.227495 | 6_2:+78879249 | Msa0930080:CDS |
| GTTCTAGTTTCAATTGATTC+AGG | 0.254254 | 6_2:+78881834 | Msa0930080:CDS |
| GCAATCGATAGGTGGGATTC+TGG | 0.262489 | 6_2:+78877249 | Msa0930080:intron |
| GTAGCAATCCTACTGCTATC+AGG | 0.285417 | 6_2:-78882524 | None:intergenic |
| AATATTTCCAAGTACATTAC+AGG | 0.302062 | 6_2:+78883072 | Msa0930080:three_prime_UTR |
| ATGTACTTGGAAATATTCTT+TGG | 0.302479 | 6_2:-78883066 | None:intergenic |
| CTGACAAGTCTGCAAAAGTA+TGG | 0.313171 | 6_2:+78880537 | Msa0930080:CDS |
| CCCCTTCATGTCTCCGTCTA+TGG | 0.323756 | 6_2:+78876428 | Msa0930080:CDS |
| ACCATCCTGACCACCAATAA+TGG | 0.326504 | 6_2:-78881949 | None:intergenic |
| TGTCAGGTACCGTGAGGATC+TGG | 0.337070 | 6_2:+78876519 | Msa0930080:CDS |
| GTTGTGTCAATCATTAATCT+TGG | 0.338589 | 6_2:+78881882 | Msa0930080:CDS |
| GTAGGTGATGGTGTTGGATT+TGG | 0.348835 | 6_2:-78876366 | None:intergenic |
| ATTCACTGATGAATATAGTT+TGG | 0.351324 | 6_2:+78882649 | Msa0930080:CDS |
| GAAAATCGAGCGACGGTGGC+AGG | 0.372098 | 6_2:-78876464 | None:intergenic |
| CAGCATAAATACTGCCAGTA+TGG | 0.381490 | 6_2:-78879330 | None:intergenic |
| ATCAAGTTGTAAAGGGAAAG+TGG | 0.385370 | 6_2:+78882727 | Msa0930080:three_prime_UTR |
| GGCTAATAGAAATACCATAA+AGG | 0.390095 | 6_2:+78882595 | Msa0930080:CDS |
| CAATAATTTGGAGATGCAAT+TGG | 0.392653 | 6_2:-78876144 | None:intergenic |
| GAAACATCCCCTCTCTAACT+TGG | 0.396563 | 6_2:-78882835 | None:intergenic |
| TATCTTGTCACTGTTTCTCT+TGG | 0.401428 | 6_2:+78880662 | Msa0930080:CDS |
| TTGATTCCCTGTAATGTACT+TGG | 0.404674 | 6_2:-78883079 | None:intergenic |
| GTTACTTCTGAGAATGGTTA+AGG | 0.405078 | 6_2:-78880765 | None:intergenic |
| CTTGTCACTGTTTCTCTTGG+TGG | 0.406048 | 6_2:+78880665 | Msa0930080:CDS |
| GAAGAAGAGATTGTTATGTC+TGG | 0.410474 | 6_2:+78880908 | Msa0930080:CDS |
| AAAACCAAAATGAGAACATC+AGG | 0.412648 | 6_2:-78883119 | None:intergenic |
| TCTTCTGAAGGTGGCCATAC+TGG | 0.414349 | 6_2:+78879316 | Msa0930080:CDS |
| ATTGAAACTAGAACAAGTTC+AGG | 0.414746 | 6_2:-78881825 | None:intergenic |
| GCTAATAGAAATACCATAAA+GGG | 0.416716 | 6_2:+78882596 | Msa0930080:CDS |
| TAATCGAGAAGCTGTTGTTT+GGG | 0.419514 | 6_2:+78882097 | Msa0930080:CDS |
| GCGACTTGCAAGCTTCTGTT+TGG | 0.420696 | 6_2:+78882920 | Msa0930080:three_prime_UTR |
| TTAATCGAGAAGCTGTTGTT+TGG | 0.423105 | 6_2:+78882096 | Msa0930080:CDS |
| ACATTGATTTGTTCTGCCTC+TGG | 0.424474 | 6_2:+78880596 | Msa0930080:CDS |
| ACAATGCGAAAAGGCCTTGT+AGG | 0.425304 | 6_2:-78877330 | None:intergenic |
| GATGCTGAAGCCATTGATAT+CGG | 0.426975 | 6_2:+78881765 | Msa0930080:CDS |
| TTTCAAAATGTAGACTACTA+TGG | 0.427064 | 6_2:+78883002 | Msa0930080:three_prime_UTR |
| CTCCTGTCTTGTAGTTATGA+TGG | 0.428145 | 6_2:+78880797 | Msa0930080:CDS |
| CTATTGATTGTGCGATATGA+AGG | 0.430370 | 6_2:+78882949 | Msa0930080:three_prime_UTR |
| GACAATTTATCCGTGCAGTA+TGG | 0.435214 | 6_2:-78882490 | None:intergenic |
| CTCTTCTTCTGCAGCTGCTA+AGG | 0.435458 | 6_2:-78880894 | None:intergenic |
| CTACAAGACAGGAGCACTCT+AGG | 0.437677 | 6_2:-78880788 | None:intergenic |
| GATGAGCTCGGTGGAGTTGA+CGG | 0.438057 | 6_2:+78876283 | Msa0930080:exon |
| CGAGATTGCTTAAATCTAAA+GGG | 0.439758 | 6_2:-78877396 | None:intergenic |
| GGTATCAGAATTGTCGCTTC+TGG | 0.440339 | 6_2:+78876623 | Msa0930080:CDS |
| CACGGATAAATTGTCTTGCT+TGG | 0.442191 | 6_2:+78882498 | Msa0930080:CDS |
| TGAAGCCATTATTGGTGGTC+AGG | 0.444420 | 6_2:+78881944 | Msa0930080:CDS |
| TACAAACAGTTATATCAATC+TGG | 0.445143 | 6_2:-78883144 | None:intergenic |
| CCTTTACAACTTGATCTTCA+CGG | 0.445771 | 6_2:-78882719 | None:intergenic |
| AGTGCAACACTAAAATCCTT+TGG | 0.445789 | 6_2:-78881795 | None:intergenic |
| GTTACAAATTTACTGCCATC+TGG | 0.447597 | 6_2:-78879229 | None:intergenic |
| GATGGAAGTGAAGCCATTAT+TGG | 0.448281 | 6_2:+78881936 | Msa0930080:CDS |
| CAATCGATAGGTGGGATTCT+GGG | 0.452531 | 6_2:+78877250 | Msa0930080:intron |
| TATGTCCTGAAAACGATGTC+GGG | 0.452600 | 6_2:-78880727 | None:intergenic |
| TTAATAGTTAAGTGGATTCA+AGG | 0.455728 | 6_2:+78880821 | Msa0930080:CDS |
| TTGTCACTGTTTCTCTTGGT+GGG | 0.456402 | 6_2:+78880666 | Msa0930080:CDS |
| AAACATCCCCTCTCTAACTT+GGG | 0.457062 | 6_2:-78882834 | None:intergenic |
| GCGAGATTGCTTAAATCTAA+AGG | 0.459551 | 6_2:-78877397 | None:intergenic |
| GTTAAGTGGATTCAAGGGAT+TGG | 0.468346 | 6_2:+78880827 | Msa0930080:CDS |
| GTCAGGTACCGTGAGGATCT+GGG | 0.468616 | 6_2:+78876520 | Msa0930080:CDS |
| CGTGAAGATCAAGTTGTAAA+GGG | 0.468706 | 6_2:+78882720 | Msa0930080:exon |
| GAATATAGTTTGGTTAGCTC+AGG | 0.471315 | 6_2:+78882659 | Msa0930080:CDS |
| ACTAATGTTGGTGAATTTGA+TGG | 0.472283 | 6_2:+78877273 | Msa0930080:CDS |
| CGCCATAGACGGAGACATGA+AGG | 0.472952 | 6_2:-78876430 | None:intergenic |
| TAATCTTGGATTTACTGTTA+CGG | 0.474705 | 6_2:+78881896 | Msa0930080:CDS |
| CCACGGCCACGTTCTGTTGA+AGG | 0.475561 | 6_2:-78876323 | None:intergenic |
| ATAAGGCGGGTTTCTTTACA+TGG | 0.476069 | 6_2:+78881729 | Msa0930080:CDS |
| GCATCTGTTGTCTCGTCTGA+TGG | 0.480001 | 6_2:+78881918 | Msa0930080:CDS |
| GCAGTATTTATGCTGTTAGC+TGG | 0.481308 | 6_2:+78879338 | Msa0930080:CDS |
| ATCATATTCGATGGAAAGAC+TGG | 0.482024 | 6_2:+78879274 | Msa0930080:CDS |
| GACATATCTGAGGATAATAG+TGG | 0.491671 | 6_2:+78880560 | Msa0930080:CDS |
| TTGATTTGTTCTGCCTCTGG+TGG | 0.491775 | 6_2:+78880599 | Msa0930080:CDS |
| AAATATTCTTTGGACAACTC+TGG | 0.493224 | 6_2:-78883056 | None:intergenic |
| GGAGTTGAAGACATGCTTGT+AGG | 0.493315 | 6_2:+78880620 | Msa0930080:CDS |
| ATTCATCATGATAACCGATC+TGG | 0.494504 | 6_2:-78876396 | None:intergenic |
| CCGTGAAGATCAAGTTGTAA+AGG | 0.495196 | 6_2:+78882719 | Msa0930080:exon |
| AGACTGTCCTTGAGAAACAT+AGG | 0.495310 | 6_2:+78882015 | Msa0930080:CDS |
| GTTGCATCTGCTGACGTGTC+AGG | 0.496526 | 6_2:+78876503 | Msa0930080:CDS |
| GCCATTATTGGTGGTCAGGA+TGG | 0.505715 | 6_2:+78881948 | Msa0930080:CDS |
| TCTAGGGTTACTTCTGAGAA+TGG | 0.505822 | 6_2:-78880771 | None:intergenic |
| ATGATGGCTTAATAGTTAAG+TGG | 0.506182 | 6_2:+78880813 | Msa0930080:CDS |
| GATGCAACCCATTCACCGTT+GGG | 0.506443 | 6_2:-78876488 | None:intergenic |
| ACGTTCTGTTGAAGGCGTGC+AGG | 0.508737 | 6_2:-78876315 | None:intergenic |
| CTTGGTCCCCTGATAGCAGT+AGG | 0.509910 | 6_2:+78882516 | Msa0930080:CDS |
| TAGCAATCCTACTGCTATCA+GGG | 0.510406 | 6_2:-78882523 | None:intergenic |
| ATGGTATTTCTATTAGCCAC+AGG | 0.512733 | 6_2:-78882590 | None:intergenic |
| CATGATAACCGATCTGGCAT+TGG | 0.515012 | 6_2:-78876390 | None:intergenic |
| CCACAGGTGACAATGCGAAA+AGG | 0.517474 | 6_2:-78877339 | None:intergenic |
| TCAAGTTGTAAAGGGAAAGT+GGG | 0.517637 | 6_2:+78882728 | Msa0930080:three_prime_UTR |
| GGCCGTGGTATTCTCATCTC+CGG | 0.518010 | 6_2:+78876338 | Msa0930080:CDS |
| GTCGCTTCTGGTGAAGCTAA+AGG | 0.520427 | 6_2:+78876635 | Msa0930080:CDS |
| TGGTTGACTTCCGATATCAA+TGG | 0.521473 | 6_2:-78881775 | None:intergenic |
| GACTGTCCTTGAGAAACATA+GGG | 0.523830 | 6_2:+78882016 | Msa0930080:CDS |
| TAAAGGGTGCTCACTTAGGT+GGG | 0.536033 | 6_2:+78882612 | Msa0930080:CDS |
| TTCTGTCAACTAGATAAGGC+GGG | 0.537021 | 6_2:+78881716 | Msa0930080:intron |
| AGATGCAACCCATTCACCGT+TGG | 0.537671 | 6_2:-78876489 | None:intergenic |
| TCTATCTTTCAAGATGAGCT+CGG | 0.538842 | 6_2:+78876271 | Msa0930080:exon |
| GAGTTGAAGACATGCTTGTA+GGG | 0.539058 | 6_2:+78880621 | Msa0930080:CDS |
| GCGACAATTCTGATACCATC+AGG | 0.539289 | 6_2:-78876617 | None:intergenic |
| AAAAGTCAAAACTGATGAAG+AGG | 0.539438 | 6_2:+78882797 | Msa0930080:three_prime_UTR |
| GATAGCAGTAGGATTGCTAC+AGG | 0.543234 | 6_2:+78882527 | Msa0930080:CDS |
| TACAAGACAGGAGCACTCTA+GGG | 0.546231 | 6_2:-78880787 | None:intergenic |
| TACTCACATCTCGGGAGGCA+CGG | 0.546800 | 6_2:-78882121 | None:intergenic |
| GCTGTTAGCTGGAGTCCTGA+TGG | 0.548585 | 6_2:+78879349 | Msa0930080:CDS |
| AGTACTAGTACTCACATCTC+GGG | 0.551436 | 6_2:-78882129 | None:intergenic |
| TAGCGGTAAATTACAAAGGA+AGG | 0.551726 | 6_2:+78880853 | Msa0930080:CDS |
| AGCCATCATAACTACAAGAC+AGG | 0.557501 | 6_2:-78880799 | None:intergenic |
| GTAAGCATGTTCGCCATAGA+CGG | 0.558880 | 6_2:-78876441 | None:intergenic |
| CACCTACACCAATGCCAGAT+CGG | 0.562580 | 6_2:+78876382 | Msa0930080:CDS |
| ACCATAAAGGGTGCTCACTT+AGG | 0.564151 | 6_2:+78882608 | Msa0930080:CDS |
| ATTGGTGTAGGTGATGGTGT+TGG | 0.567354 | 6_2:-78876372 | None:intergenic |
| ATAAAGGGTGCTCACTTAGG+TGG | 0.568101 | 6_2:+78882611 | Msa0930080:CDS |
| GGTGTTGGATTTGGAGTCGC+CGG | 0.568267 | 6_2:-78876357 | None:intergenic |
| TGGGATTCTGGGACTAATGT+TGG | 0.568712 | 6_2:+78877261 | Msa0930080:CDS |
| TCGCATTGTCACCTGTGGAG+AGG | 0.571600 | 6_2:+78877344 | Msa0930080:CDS |
| TAATAGTTAAGTGGATTCAA+GGG | 0.572072 | 6_2:+78880822 | Msa0930080:CDS |
| ATATGTCCTGAAAACGATGT+CGG | 0.572109 | 6_2:-78880728 | None:intergenic |
| CCTTCAACAGAACGTGGCCG+TGG | 0.572710 | 6_2:+78876323 | Msa0930080:CDS |
| CAAGATAATCGTTCAACCAC+AGG | 0.574023 | 6_2:-78880646 | None:intergenic |
| GACAAGAAAATCCTCTCCAC+AGG | 0.576600 | 6_2:-78877355 | None:intergenic |
| ATCGGTGAGTTATCTTCTGA+AGG | 0.580609 | 6_2:+78879304 | Msa0930080:CDS |
| AACTCAAAACTCGTCTTGAG+TGG | 0.584201 | 6_2:-78877296 | None:intergenic |
| CTTATCACCCCAAGTTAGAG+AGG | 0.584499 | 6_2:+78882826 | Msa0930080:three_prime_UTR |
| GATCTTCAGTGGTCTCCTGA+TGG | 0.585210 | 6_2:+78876602 | Msa0930080:CDS |
| TACAACTTGATCTTCACGGA+GGG | 0.586215 | 6_2:-78882715 | None:intergenic |
| ACATGCTTGTAGGGTGCCTG+TGG | 0.597201 | 6_2:+78880630 | Msa0930080:CDS |
| TGACAAGTCTGCAAAAGTAT+GGG | 0.598045 | 6_2:+78880538 | Msa0930080:CDS |
| AGTTTCGTGTTCTTTCTGGA+AGG | 0.598240 | 6_2:+78876573 | Msa0930080:CDS |
| GCCATAGACGGAGACATGAA+GGG | 0.598923 | 6_2:-78876429 | None:intergenic |
| AAAATCGAGCGACGGTGGCA+GGG | 0.599251 | 6_2:-78876463 | None:intergenic |
| GGAAAGACTGGAGAGAAGAT+CGG | 0.599432 | 6_2:+78879286 | Msa0930080:CDS |
| CTTCTGTCAACTAGATAAGG+CGG | 0.601647 | 6_2:+78881715 | Msa0930080:intron |
| AATGCAGTGCACGATGATGA+TGG | 0.604966 | 6_2:-78876247 | None:intergenic |
| ATCTGAGGATAATAGTGGGA+AGG | 0.606291 | 6_2:+78880565 | Msa0930080:CDS |
| TTGTTTGTTCATATATCACA+AGG | 0.607911 | 6_2:+78882888 | Msa0930080:three_prime_UTR |
| TATTTCTATTAGCCACAGGT+TGG | 0.608800 | 6_2:-78882586 | None:intergenic |
| AAAGGGTGCTCACTTAGGTG+GGG | 0.609702 | 6_2:+78882613 | Msa0930080:CDS |
| ACAACTTGATCTTCACGGAG+GGG | 0.609851 | 6_2:-78882714 | None:intergenic |
| TAGCACCCCTATGTTTCTCA+AGG | 0.610582 | 6_2:-78882022 | None:intergenic |
| AAGGCGGGTTTCTTTACATG+GGG | 0.611641 | 6_2:+78881731 | Msa0930080:CDS |
| AAAGTCAAAACTGATGAAGA+GGG | 0.615257 | 6_2:+78882798 | Msa0930080:three_prime_UTR |
| TCTGGCATTGGTGTAGGTGA+TGG | 0.618379 | 6_2:-78876378 | None:intergenic |
| GATATAGCGGTAAATTACAA+AGG | 0.618475 | 6_2:+78880849 | Msa0930080:CDS |
| TAAGGCGGGTTTCTTTACAT+GGG | 0.618983 | 6_2:+78881730 | Msa0930080:CDS |
| TGTGTGAGATATTCTCCAGA+TGG | 0.622541 | 6_2:+78879214 | Msa0930080:CDS |
| TAGTTTGGTTAGCTCAGGCG+AGG | 0.625931 | 6_2:+78882664 | Msa0930080:CDS |
| GGGTGAAAATCGAGCGACGG+TGG | 0.626749 | 6_2:-78876468 | None:intergenic |
| AACATCCCCTCTCTAACTTG+GGG | 0.627088 | 6_2:-78882833 | None:intergenic |
| TCAGGTACCGTGAGGATCTG+GGG | 0.627630 | 6_2:+78876521 | Msa0930080:CDS |
| TTAGATTTAAGCAATCTCGC+AGG | 0.628883 | 6_2:+78877400 | Msa0930080:CDS |
| ACTTCTGAGAATGGTTAAGG+AGG | 0.628997 | 6_2:-78880762 | None:intergenic |
| GTTGTGCTTATAAACCTACA+AGG | 0.629807 | 6_2:+78877316 | Msa0930080:CDS |
| CCATAGACGGAGACATGAAG+GGG | 0.633505 | 6_2:-78876428 | None:intergenic |
| ACATATCTGAGGATAATAGT+GGG | 0.634727 | 6_2:+78880561 | Msa0930080:CDS |
| GAAGGATCGATGATCTTCAG+TGG | 0.639646 | 6_2:+78876591 | Msa0930080:CDS |
| ATACATAAAAGCGCGAACAA+AGG | 0.644313 | 6_2:-78876663 | None:intergenic |
| TTATCACCCCAAGTTAGAGA+GGG | 0.646189 | 6_2:+78882827 | Msa0930080:three_prime_UTR |
| TGATATCGGAAGTCAACCAA+AGG | 0.651151 | 6_2:+78881779 | Msa0930080:CDS |
| ATGTCCTGAAAACGATGTCG+GGG | 0.652427 | 6_2:-78880726 | None:intergenic |
| CATGTCTTCAACTCCACCAG+AGG | 0.652652 | 6_2:-78880612 | None:intergenic |
| ATCTTTCAAGATGAGCTCGG+TGG | 0.653857 | 6_2:+78876274 | Msa0930080:exon |
| GCGAGTTCCCCAGATCCTCA+CGG | 0.657058 | 6_2:-78876528 | None:intergenic |
| ATATTTCCAAGTACATTACA+GGG | 0.657613 | 6_2:+78883073 | Msa0930080:three_prime_UTR |
| AAAAGTATGGGACATATCTG+AGG | 0.658576 | 6_2:+78880550 | Msa0930080:CDS |
| GGTGAGTTATCTTCTGAAGG+TGG | 0.661525 | 6_2:+78879307 | Msa0930080:CDS |
| GGAAGTGAAGCCATTATTGG+TGG | 0.661612 | 6_2:+78881939 | Msa0930080:CDS |
| ACATGCTGTACCATACTGCA+CGG | 0.663929 | 6_2:+78882480 | Msa0930080:CDS |
| AACCGATCTGGCATTGGTGT+AGG | 0.664335 | 6_2:-78876384 | None:intergenic |
| TGCACGCCTTCAACAGAACG+TGG | 0.678162 | 6_2:+78876317 | Msa0930080:CDS |
| TCTTTACATGGGGATCAGTG+CGG | 0.680969 | 6_2:+78881741 | Msa0930080:CDS |
| GTGCACGATGATGATGGTGA+TGG | 0.685538 | 6_2:-78876241 | None:intergenic |
| TATCACCCCAAGTTAGAGAG+GGG | 0.694883 | 6_2:+78882828 | Msa0930080:three_prime_UTR |
| AAACCAAAATGAGAACATCA+GGG | 0.695207 | 6_2:-78883118 | None:intergenic |
| ATATGAGATTGACCAACCTG+TGG | 0.696248 | 6_2:+78882574 | Msa0930080:CDS |
| TCAGGAGTTGTCATGCTGCG+TGG | 0.701235 | 6_2:+78881852 | Msa0930080:CDS |
| ATTCAAGGGATTGGATATAG+CGG | 0.701405 | 6_2:+78880836 | Msa0930080:CDS |
| GTTGGGTGAAAATCGAGCGA+CGG | 0.702331 | 6_2:-78876471 | None:intergenic |
| GATTGCTTAAATCTAAAGGG+AGG | 0.704673 | 6_2:-78877393 | None:intergenic |
| ACTAGTACTCACATCTCGGG+AGG | 0.705295 | 6_2:-78882126 | None:intergenic |
| GAGGGGTTATCTTCCAGACA+CGG | 0.708079 | 6_2:-78882697 | None:intergenic |
| CTGACGTGTCAGGTACCGTG+AGG | 0.722749 | 6_2:+78876513 | Msa0930080:CDS |
| AGCAATCCTACTGCTATCAG+GGG | 0.726822 | 6_2:-78882522 | None:intergenic |
| ACTGTCCTTGAGAAACATAG+GGG | 0.726823 | 6_2:+78882017 | Msa0930080:CDS |
| CGCCGGAGATGAGAATACCA+CGG | 0.738636 | 6_2:-78876340 | None:intergenic |
| TTACAACTTGATCTTCACGG+AGG | 0.742051 | 6_2:-78882716 | None:intergenic |
| CATAGACGGAGACATGAAGG+GGG | 0.769626 | 6_2:-78876427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTAAAATTTCAAAT+AGG | - | chr6_2:78879871-78879890 | None:intergenic | 10.0% |
| !! | CAAATGAAATTAATTATATT+GGG | - | chr6_2:78881422-78881441 | None:intergenic | 10.0% |
| !! | TCAAATGAAATTAATTATAT+TGG | - | chr6_2:78881423-78881442 | None:intergenic | 10.0% |
| !!! | ATAATACTTTTGTTATTTAA+AGG | - | chr6_2:78882363-78882382 | None:intergenic | 10.0% |
| !!! | AACTAAGTATAAATTTTATT+TGG | + | chr6_2:78883228-78883247 | Msa0930080:three_prime_UTR | 10.0% |
| !! | TCACTTTACTATATTTATAT+AGG | + | chr6_2:78876745-78876764 | Msa0930080:intron | 15.0% |
| !! | TTACTATATTTATATAGGAT+AGG | + | chr6_2:78876750-78876769 | Msa0930080:intron | 15.0% |
| !!! | ATGTTATAACTTGTTTTTAT+AGG | + | chr6_2:78877039-78877058 | Msa0930080:intron | 15.0% |
| !!! | TAATTAGACACATATTTTTA+AGG | - | chr6_2:78877632-78877651 | None:intergenic | 15.0% |
| !!! | GATAAAACATAAAAAGTATA+TGG | - | chr6_2:78877685-78877704 | None:intergenic | 15.0% |
| !!! | TGGTTTTATAAATTATAGAT+AGG | - | chr6_2:78878008-78878027 | None:intergenic | 15.0% |
| !! | AATTAAATTAACTAAGTTGT+TGG | - | chr6_2:78878052-78878071 | None:intergenic | 15.0% |
| !!! | AAATTAATCAGTTAGTTTTA+TGG | - | chr6_2:78878369-78878388 | None:intergenic | 15.0% |
| !!! | GTATTAATTAATTTTAAGTG+AGG | - | chr6_2:78878913-78878932 | None:intergenic | 15.0% |
| !!! | TGAGTATTTTTTATTGATTA+TGG | + | chr6_2:78879392-78879411 | Msa0930080:intron | 15.0% |
| !!! | TTTTGCAATTAAAATGAAAA+AGG | + | chr6_2:78882314-78882333 | Msa0930080:intron | 15.0% |
| !!! | AATTTATACTTAGTTTTGTT+TGG | - | chr6_2:78883223-78883242 | None:intergenic | 15.0% |
| !!! | TTTTGGCTATTTCAATAATT+TGG | - | chr6_2:78876159-78876178 | None:intergenic | 20.0% |
| !! | AAGAAAAGAAAAGAAAAGAA+AGG | - | chr6_2:78876699-78876718 | None:intergenic | 20.0% |
| !! | AATAAGTGTTTATACATGAT+AGG | - | chr6_2:78876917-78876936 | None:intergenic | 20.0% |
| !!! | ATGTTTGAGTGAATATTTTT+TGG | + | chr6_2:78877160-78877179 | Msa0930080:intron | 20.0% |
| !!! | AAGACATTTTTCTTTATAGA+AGG | - | chr6_2:78877707-78877726 | None:intergenic | 20.0% |
| !!! | TTGATGAATTTTCAAAACAT+TGG | + | chr6_2:78877729-78877748 | Msa0930080:intron | 20.0% |
| !!! | TTGCAGATATTTTTAAAATG+TGG | - | chr6_2:78877856-78877875 | None:intergenic | 20.0% |
| !! | TAAATGAGAATATTGATCTT+TGG | - | chr6_2:78878175-78878194 | None:intergenic | 20.0% |
| !!! | TTCTCATTTATTTTATAGCA+AGG | + | chr6_2:78878185-78878204 | Msa0930080:intron | 20.0% |
| !!! | ATTTTTAAATTATGCTCACT+TGG | - | chr6_2:78878397-78878416 | None:intergenic | 20.0% |
| !!! | TTGCAGATATTTTTAAAATG+TGG | - | chr6_2:78877856-78877875 | None:intergenic | 20.0% |
| !! | ACACTATCTTTAAACATAAA+GGG | - | chr6_2:78879063-78879082 | None:intergenic | 20.0% |
| !! | TACACTATCTTTAAACATAA+AGG | - | chr6_2:78879064-78879083 | None:intergenic | 20.0% |
| !!! | ACGATAATTTGTTTATGTAT+AGG | + | chr6_2:78879170-78879189 | Msa0930080:intron | 20.0% |
| !!! | CGATAATTTGTTTATGTATA+GGG | + | chr6_2:78879171-78879190 | Msa0930080:intron | 20.0% |
| !!! | TATTTTTTATTGATTATGGC+AGG | + | chr6_2:78879396-78879415 | Msa0930080:intron | 20.0% |
| !! | ACTATAAACTAAGAAATATG+TGG | + | chr6_2:78879526-78879545 | Msa0930080:intron | 20.0% |
| !! | TGAGATTTATTATTCTACAT+TGG | - | chr6_2:78880211-78880230 | None:intergenic | 20.0% |
| !! | AGAATAATAAATCTCATTCA+AGG | + | chr6_2:78880215-78880234 | Msa0930080:intron | 20.0% |
| !! | TTTGTTTATCCAAATCAAAT+TGG | - | chr6_2:78881019-78881038 | None:intergenic | 20.0% |
| !!! | GATGAAATAAATCATTTTCT+CGG | + | chr6_2:78881084-78881103 | Msa0930080:intron | 20.0% |
| !! | TGTTATCTATTGAAGTATAT+TGG | + | chr6_2:78881107-78881126 | Msa0930080:intron | 20.0% |
| !! | ATTACTACTGCTTATTTAAT+GGG | - | chr6_2:78881179-78881198 | None:intergenic | 20.0% |
| !! | AATTACTACTGCTTATTTAA+TGG | - | chr6_2:78881180-78881199 | None:intergenic | 20.0% |
| !! | TTGCTAACTTATAATATCTT+GGG | - | chr6_2:78881525-78881544 | None:intergenic | 20.0% |
| !! | ATTGCTAACTTATAATATCT+TGG | - | chr6_2:78881526-78881545 | None:intergenic | 20.0% |
| !! | ATATTATAAGTTAGCAATTG+AGG | + | chr6_2:78881528-78881547 | Msa0930080:intron | 20.0% |
| !!! | TTCATTTTAATTGCAAAACT+GGG | - | chr6_2:78882312-78882331 | None:intergenic | 20.0% |
| !!! | TTTCATTTTAATTGCAAAAC+TGG | - | chr6_2:78882313-78882332 | None:intergenic | 20.0% |
| ! | CTTTCATTTACAACTAATCA+TGG | + | chr6_2:78876821-78876840 | Msa0930080:intron | 25.0% |
| !! | CATCTAGATAAACTATTTTC+AGG | - | chr6_2:78877022-78877041 | None:intergenic | 25.0% |
| ! | AAGCATCAAAATCAGATATA+GGG | - | chr6_2:78877131-78877150 | None:intergenic | 25.0% |
| !! | AAAGCATCAAAATCAGATAT+AGG | - | chr6_2:78877132-78877151 | None:intergenic | 25.0% |
| !! | TTTCTTGTCAACTTTTATGA+AGG | + | chr6_2:78877369-78877388 | Msa0930080:CDS | 25.0% |
| !!! | ATATTTTTAAGGACATGCAA+GGG | - | chr6_2:78877621-78877640 | None:intergenic | 25.0% |
| !! | ATGGCAATATGCAAAATTTT+GGG | - | chr6_2:78877666-78877685 | None:intergenic | 25.0% |
| !! | TATGGCAATATGCAAAATTT+TGG | - | chr6_2:78877667-78877686 | None:intergenic | 25.0% |
| ! | TGAATTATCATTAGATGTCA+GGG | + | chr6_2:78877880-78877899 | Msa0930080:intron | 25.0% |
| ! | TCGATATATTACAAAATCTG+TGG | - | chr6_2:78878132-78878151 | None:intergenic | 25.0% |
| ! | CGAGAAAAAAAAATGAGAAT+TGG | + | chr6_2:78878149-78878168 | Msa0930080:intron | 25.0% |
| ! | ACTTGAATCATACATAAAGT+TGG | - | chr6_2:78878211-78878230 | None:intergenic | 25.0% |
| ! | TGATTTGAATGAATGATTCA+TGG | - | chr6_2:78878435-78878454 | None:intergenic | 25.0% |
| ! | CACACTTCAAAAATCAAAAT+TGG | - | chr6_2:78878608-78878627 | None:intergenic | 25.0% |
| ! | GGAAATACAAAAATACTAAC+CGG | + | chr6_2:78878797-78878816 | Msa0930080:intron | 25.0% |
| ! | TTTAAACATAAAGGGAAAAG+GGG | - | chr6_2:78879055-78879074 | None:intergenic | 25.0% |
| ! | CTTTAAACATAAAGGGAAAA+GGG | - | chr6_2:78879056-78879075 | None:intergenic | 25.0% |
| ! | TCTTTAAACATAAAGGGAAA+AGG | - | chr6_2:78879057-78879076 | None:intergenic | 25.0% |
| ! | ATTTATCAGACGAATGTAAT+AGG | - | chr6_2:78879140-78879159 | None:intergenic | 25.0% |
| ! | ATCAACATCATAGATTGAAA+AGG | - | chr6_2:78879470-78879489 | None:intergenic | 25.0% |
| ! | GAAATATGTGGTAAAGTAAA+AGG | + | chr6_2:78879538-78879557 | Msa0930080:intron | 25.0% |
| ! | TAGAAAAGTGAATATAAGTC+AGG | - | chr6_2:78879742-78879761 | None:intergenic | 25.0% |
| !!! | TCATTTTAACTTGTAGGTTA+TGG | + | chr6_2:78879773-78879792 | Msa0930080:intron | 25.0% |
| !!! | GAGAATTCTTCACTTTTTTT+GGG | + | chr6_2:78880024-78880043 | Msa0930080:intron | 25.0% |
| ! | ACTAAAACTCTCCAATATAT+GGG | - | chr6_2:78880188-78880207 | None:intergenic | 25.0% |
| ! | ATAATAAATCTCATTCAAGG+TGG | + | chr6_2:78880218-78880237 | Msa0930080:intron | 25.0% |
| ! | TAATAAATCTCATTCAAGGT+GGG | + | chr6_2:78880219-78880238 | Msa0930080:intron | 25.0% |
| !!! | TTAGATTTTGTTTGAGAGTT+TGG | - | chr6_2:78880312-78880331 | None:intergenic | 25.0% |
| !! | TTAATAGTTAAGTGGATTCA+AGG | + | chr6_2:78880821-78880840 | Msa0930080:CDS | 25.0% |
| !! | TAATAGTTAAGTGGATTCAA+GGG | + | chr6_2:78880822-78880841 | Msa0930080:CDS | 25.0% |
| !!! | TATGTCTGGTTTTGATAATA+AGG | + | chr6_2:78880922-78880941 | Msa0930080:CDS | 25.0% |
| !! | ATTTAATTTCGATACTCTGT+TGG | - | chr6_2:78881291-78881310 | None:intergenic | 25.0% |
| !!! | GTCACAACAATATTAGTTTT+TGG | - | chr6_2:78881387-78881406 | None:intergenic | 25.0% |
| ! | GAGAAATGTTTCGTATTAAT+TGG | - | chr6_2:78881446-78881465 | None:intergenic | 25.0% |
| ! | CGAAAATCGTTTATAACTAA+TGG | + | chr6_2:78881661-78881680 | Msa0930080:intron | 25.0% |
| ! | TAATCTTGGATTTACTGTTA+CGG | + | chr6_2:78881896-78881915 | Msa0930080:CDS | 25.0% |
| !!! | ATTTTTCAATGTTTGCATCA+GGG | + | chr6_2:78882069-78882088 | Msa0930080:CDS | 25.0% |
| ! | TATATGTTCTTGAACAAAAC+CGG | - | chr6_2:78882164-78882183 | None:intergenic | 25.0% |
| ! | TGCTTTCAAATATTACAAAC+AGG | + | chr6_2:78882266-78882285 | Msa0930080:intron | 25.0% |
| ! | TTTCATATATGTTATTGTGC+AGG | + | chr6_2:78882445-78882464 | Msa0930080:intron | 25.0% |
| ! | GCTAATAGAAATACCATAAA+GGG | + | chr6_2:78882596-78882615 | Msa0930080:CDS | 25.0% |
| ! | ATTCACTGATGAATATAGTT+TGG | + | chr6_2:78882649-78882668 | Msa0930080:CDS | 25.0% |
| ! | TTGTTTGTTCATATATCACA+AGG | + | chr6_2:78882888-78882907 | Msa0930080:three_prime_UTR | 25.0% |
| ! | TTTCAAAATGTAGACTACTA+TGG | + | chr6_2:78883002-78883021 | Msa0930080:three_prime_UTR | 25.0% |
| ! | ATGTACTTGGAAATATTCTT+TGG | - | chr6_2:78883069-78883088 | None:intergenic | 25.0% |
| ! | AATATTTCCAAGTACATTAC+AGG | + | chr6_2:78883072-78883091 | Msa0930080:three_prime_UTR | 25.0% |
| ! | ATATTTCCAAGTACATTACA+GGG | + | chr6_2:78883073-78883092 | Msa0930080:three_prime_UTR | 25.0% |
| ! | TACAAACAGTTATATCAATC+TGG | - | chr6_2:78883147-78883166 | None:intergenic | 25.0% |
| CAATAATTTGGAGATGCAAT+TGG | - | chr6_2:78876147-78876166 | None:intergenic | 30.0% | |
| !!! | CAATGAATTCGTTTTGAAGA+AGG | + | chr6_2:78876550-78876569 | Msa0930080:CDS | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | + | chr6_2:78876979-78876998 | Msa0930080:intron | 30.0% |
| !!! | GTTATTTTTATAAGCTGTCC+AGG | - | chr6_2:78877000-78877019 | None:intergenic | 30.0% |
| AATCAGATATAGGGAATGTT+TGG | - | chr6_2:78877122-78877141 | None:intergenic | 30.0% | |
| CTATATCGTACTTCTTTAGT+TGG | + | chr6_2:78877202-78877221 | Msa0930080:intron | 30.0% | |
| ! | ACTAATGTTGGTGAATTTGA+TGG | + | chr6_2:78877273-78877292 | Msa0930080:CDS | 30.0% |
| CGAGATTGCTTAAATCTAAA+GGG | - | chr6_2:78877399-78877418 | None:intergenic | 30.0% | |
| GGAGAGAAACTTATATAAGT+CGG | - | chr6_2:78877544-78877563 | None:intergenic | 30.0% | |
| !! | CATATTTTTAAGGACATGCA+AGG | - | chr6_2:78877622-78877641 | None:intergenic | 30.0% |
| ! | CATTGGTTGTTTGAGTTTAT+TGG | + | chr6_2:78877746-78877765 | Msa0930080:intron | 30.0% |
| CTGAATTATCATTAGATGTC+AGG | + | chr6_2:78877879-78877898 | Msa0930080:intron | 30.0% | |
| TAAAAATGTATATGACCGCA+CGG | - | chr6_2:78877963-78877982 | None:intergenic | 30.0% | |
| !!! | GATTTGCACATTTGTTTTGA+AGG | - | chr6_2:78878078-78878097 | None:intergenic | 30.0% |
| TGAATGATTCATGGATACTT+TGG | - | chr6_2:78878426-78878445 | None:intergenic | 30.0% | |
| ATATGTGTATGTCTTGAACT+GGG | - | chr6_2:78878480-78878499 | None:intergenic | 30.0% | |
| TATATGTGTATGTCTTGAAC+TGG | - | chr6_2:78878481-78878500 | None:intergenic | 30.0% | |
| ATAACAAAAGACACACACAT+AGG | + | chr6_2:78878498-78878517 | Msa0930080:intron | 30.0% | |
| !! | TAGTGTGGTCTTTTGTTATA+TGG | - | chr6_2:78878536-78878555 | None:intergenic | 30.0% |
| !! | ATAACATTGATAGTGTAGTG+TGG | - | chr6_2:78878551-78878570 | None:intergenic | 30.0% |
| !! | TTTTTACTGTACTGATGACA+CGG | - | chr6_2:78878714-78878733 | None:intergenic | 30.0% |
| ! | TTTGGAGTTGATTCTTTCAA+AGG | - | chr6_2:78878747-78878766 | None:intergenic | 30.0% |
| GCTAACTTATGATCGTTATT+TGG | - | chr6_2:78878765-78878784 | None:intergenic | 30.0% | |
| TGCATCTATGATATTCTAAC+CGG | - | chr6_2:78878819-78878838 | None:intergenic | 30.0% | |
| ! | CTTTTCATATTCCTCTGTTT+TGG | + | chr6_2:78879088-78879107 | Msa0930080:intron | 30.0% |
| ATAAGAACAAACCAAAACAG+AGG | - | chr6_2:78879102-78879121 | None:intergenic | 30.0% | |
| !! | AAAAAGGGTATCATATTCGA+TGG | + | chr6_2:78879265-78879284 | Msa0930080:CDS | 30.0% |
| AGAGACAAATACGTGAAAAT+GGG | - | chr6_2:78879439-78879458 | None:intergenic | 30.0% | |
| ATCATAGATTGAAAAGGAGA+TGG | - | chr6_2:78879464-78879483 | None:intergenic | 30.0% | |
| ! | CACATTTTGAATGCAAACTA+TGG | + | chr6_2:78879610-78879629 | Msa0930080:intron | 30.0% |
| ATAGAAGTTATTCGAGCTAA+GGG | + | chr6_2:78879636-78879655 | Msa0930080:intron | 30.0% | |
| !!! | TTGCTCTCATTTTAACTTGT+AGG | + | chr6_2:78879767-78879786 | Msa0930080:intron | 30.0% |
| !! | GTTATGGTTTGTTTGTTATC+TGG | + | chr6_2:78879789-78879808 | Msa0930080:intron | 30.0% |
| !!! | TTGTTTGTTATCTGGTCTTT+TGG | + | chr6_2:78879797-78879816 | Msa0930080:intron | 30.0% |
| !!! | TGTTTGTTATCTGGTCTTTT+GGG | + | chr6_2:78879798-78879817 | Msa0930080:intron | 30.0% |
| !! | TGCTAGTTTACTGAGATTTT+TGG | + | chr6_2:78879933-78879952 | Msa0930080:intron | 30.0% |
| !!! | GGAGAATTCTTCACTTTTTT+TGG | + | chr6_2:78880023-78880042 | Msa0930080:intron | 30.0% |
| !! | TTTTGGGAGAATGTTTTTGA+AGG | + | chr6_2:78880040-78880059 | Msa0930080:intron | 30.0% |
| !! | TTTGGGAGAATGTTTTTGAA+GGG | + | chr6_2:78880041-78880060 | Msa0930080:intron | 30.0% |
| GACTAAAACTCTCCAATATA+TGG | - | chr6_2:78880189-78880208 | None:intergenic | 30.0% | |
| AATAAATCTCATTCAAGGTG+GGG | + | chr6_2:78880220-78880239 | Msa0930080:intron | 30.0% | |
| !! | ATTTTGTTTGAGAGTTTGGA+GGG | - | chr6_2:78880308-78880327 | None:intergenic | 30.0% |
| AAATGACTAGTATAGCAAAG+GGG | - | chr6_2:78880435-78880454 | None:intergenic | 30.0% | |
| GAAATGACTAGTATAGCAAA+GGG | - | chr6_2:78880436-78880455 | None:intergenic | 30.0% | |
| AGAAATGACTAGTATAGCAA+AGG | - | chr6_2:78880437-78880456 | None:intergenic | 30.0% | |
| TCAGTTGTAATGTTATCGTT+AGG | + | chr6_2:78880499-78880518 | Msa0930080:intron | 30.0% | |
| ACATATCTGAGGATAATAGT+GGG | + | chr6_2:78880561-78880580 | Msa0930080:CDS | 30.0% | |
| ATGATGGCTTAATAGTTAAG+TGG | + | chr6_2:78880813-78880832 | Msa0930080:CDS | 30.0% | |
| GATATAGCGGTAAATTACAA+AGG | + | chr6_2:78880849-78880868 | Msa0930080:CDS | 30.0% | |
| ! | GTTTTGCTTATACTCTTTGA+CGG | + | chr6_2:78880950-78880969 | Msa0930080:intron | 30.0% |
| CCAAATCAAATTGGAGAAAA+TGG | - | chr6_2:78881010-78881029 | None:intergenic | 30.0% | |
| ! | CCATTTTCTCCAATTTGATT+TGG | + | chr6_2:78881007-78881026 | Msa0930080:intron | 30.0% |
| CATTCATTACTAGATGAGTT+TGG | + | chr6_2:78881360-78881379 | Msa0930080:intron | 30.0% | |
| ACGAAACATTTCTCTCTATA+CGG | + | chr6_2:78881452-78881471 | Msa0930080:intron | 30.0% | |
| ATAATATCTTGGGACTAAGA+AGG | - | chr6_2:78881515-78881534 | None:intergenic | 30.0% | |
| GATATTTAGCAATTAGTGTG+CGG | + | chr6_2:78881612-78881631 | Msa0930080:intron | 30.0% | |
| ATATTTAGCAATTAGTGTGC+GGG | + | chr6_2:78881613-78881632 | Msa0930080:intron | 30.0% | |
| ATTGAAACTAGAACAAGTTC+AGG | - | chr6_2:78881828-78881847 | None:intergenic | 30.0% | |
| !! | GTTCTAGTTTCAATTGATTC+AGG | + | chr6_2:78881834-78881853 | Msa0930080:CDS | 30.0% |
| GTTGTGTCAATCATTAATCT+TGG | + | chr6_2:78881882-78881901 | Msa0930080:CDS | 30.0% | |
| CTGCACATATATTCTATTTC+TGG | + | chr6_2:78881975-78881994 | Msa0930080:CDS | 30.0% | |
| GATGCAAACATTGAAAAATC+TGG | - | chr6_2:78882068-78882087 | None:intergenic | 30.0% | |
| !! | GATTTTTCAATGTTTGCATC+AGG | + | chr6_2:78882068-78882087 | Msa0930080:CDS | 30.0% |
| !! | TTTTTCAATGTTTGCATCAG+GGG | + | chr6_2:78882070-78882089 | Msa0930080:CDS | 30.0% |
| !! | TACTAGTACTACTTTTGAAC+CGG | + | chr6_2:78882142-78882161 | Msa0930080:intron | 30.0% |
| !! | TTGTTATTTAAAGGTCAGCT+TGG | - | chr6_2:78882354-78882373 | None:intergenic | 30.0% |
| GGCTAATAGAAATACCATAA+AGG | + | chr6_2:78882595-78882614 | Msa0930080:CDS | 30.0% | |
| !!! | TCTTCATCAGTTTTGACTTT+TGG | - | chr6_2:78882798-78882817 | None:intergenic | 30.0% |
| AAAAGTCAAAACTGATGAAG+AGG | + | chr6_2:78882797-78882816 | Msa0930080:three_prime_UTR | 30.0% | |
| AAAGTCAAAACTGATGAAGA+GGG | + | chr6_2:78882798-78882817 | Msa0930080:three_prime_UTR | 30.0% | |
| ACTACTCACAACAAGAAAAA+TGG | - | chr6_2:78882975-78882994 | None:intergenic | 30.0% | |
| AAATATTCTTTGGACAACTC+TGG | - | chr6_2:78883059-78883078 | None:intergenic | 30.0% | |
| AAACCAAAATGAGAACATCA+GGG | - | chr6_2:78883121-78883140 | None:intergenic | 30.0% | |
| AAAACCAAAATGAGAACATC+AGG | - | chr6_2:78883122-78883141 | None:intergenic | 30.0% | |
| ! | TGACTCACTCAAAAAGCTTT+TGG | - | chr6_2:78876176-78876195 | None:intergenic | 35.0% |
| TCTATCTTTCAAGATGAGCT+CGG | + | chr6_2:78876271-78876290 | Msa0930080:exon | 35.0% | |
| ATTCATCATGATAACCGATC+TGG | - | chr6_2:78876399-78876418 | None:intergenic | 35.0% | |
| ! | ATACATAAAAGCGCGAACAA+AGG | - | chr6_2:78876666-78876685 | None:intergenic | 35.0% |
| ATCATGGCTATGTCATTCTT+TGG | + | chr6_2:78876837-78876856 | Msa0930080:intron | 35.0% | |
| CTATGTCATTCTTTGGACTT+TGG | + | chr6_2:78876844-78876863 | Msa0930080:intron | 35.0% | |
| GATATAGGGAATGTTTGGAT+TGG | - | chr6_2:78877117-78877136 | None:intergenic | 35.0% | |
| GATCAATTTCTGCAATCGAT+AGG | + | chr6_2:78877238-78877257 | Msa0930080:intron | 35.0% | |
| AATTTCTGCAATCGATAGGT+GGG | + | chr6_2:78877242-78877261 | Msa0930080:intron | 35.0% | |
| GTTGTGCTTATAAACCTACA+AGG | + | chr6_2:78877316-78877335 | Msa0930080:CDS | 35.0% | |
| GATTGCTTAAATCTAAAGGG+AGG | - | chr6_2:78877396-78877415 | None:intergenic | 35.0% | |
| GCGAGATTGCTTAAATCTAA+AGG | - | chr6_2:78877400-78877419 | None:intergenic | 35.0% | |
| TTAGATTTAAGCAATCTCGC+AGG | + | chr6_2:78877400-78877419 | Msa0930080:CDS | 35.0% | |
| ! | TCTCCATGCATTTTTGTGAA+GGG | + | chr6_2:78877559-78877578 | Msa0930080:intron | 35.0% |
| TTTCCCTTCACAAAAATGCA+TGG | - | chr6_2:78877565-78877584 | None:intergenic | 35.0% | |
| ! | GTTGTTTGAGTTTATTGGAG+TGG | + | chr6_2:78877751-78877770 | Msa0930080:intron | 35.0% |
| GTTCTCATTAGATGTTGTGT+TGG | - | chr6_2:78877801-78877820 | None:intergenic | 35.0% | |
| ATTAGATGTCAGGGTAAAAC+TGG | + | chr6_2:78877889-78877908 | Msa0930080:intron | 35.0% | |
| TTAGATGTCAGGGTAAAACT+GGG | + | chr6_2:78877890-78877909 | Msa0930080:intron | 35.0% | |
| ACGATCTAGTAAAGAGAAAG+GGG | - | chr6_2:78877936-78877955 | None:intergenic | 35.0% | |
| GACGATCTAGTAAAGAGAAA+GGG | - | chr6_2:78877937-78877956 | None:intergenic | 35.0% | |
| AGACGATCTAGTAAAGAGAA+AGG | - | chr6_2:78877938-78877957 | None:intergenic | 35.0% | |
| AAAAATGTATATGACCGCAC+GGG | - | chr6_2:78877962-78877981 | None:intergenic | 35.0% | |
| GGATCCTTCTTGTATCATTA+CGG | + | chr6_2:78878327-78878346 | Msa0930080:intron | 35.0% | |
| TCATCCGTAATGATACAAGA+AGG | - | chr6_2:78878334-78878353 | None:intergenic | 35.0% | |
| ! | TTTGTTATATGGAGTGTACC+AGG | - | chr6_2:78878525-78878544 | None:intergenic | 35.0% |
| AATTGCACCATGAAATTGGA+GGG | - | chr6_2:78878648-78878667 | None:intergenic | 35.0% | |
| CAATTTCATGGTGCAATTCA+GGG | + | chr6_2:78878650-78878669 | Msa0930080:intron | 35.0% | |
| !! | TTTTACTGTACTGATGACAC+GGG | - | chr6_2:78878713-78878732 | None:intergenic | 35.0% |
| TGATTCTTTCAAAGGACACA+AGG | - | chr6_2:78878739-78878758 | None:intergenic | 35.0% | |
| ! | TGATGTACAATCGGATTTTC+TGG | - | chr6_2:78878889-78878908 | None:intergenic | 35.0% |
| AAGTGAGGATGATGTACAAT+CGG | - | chr6_2:78878898-78878917 | None:intergenic | 35.0% | |
| TGAATTCTCATTAGACGTCA+GGG | + | chr6_2:78879000-78879019 | Msa0930080:intron | 35.0% | |
| GTTACAAATTTACTGCCATC+TGG | - | chr6_2:78879232-78879251 | None:intergenic | 35.0% | |
| !! | AACCGTTAGTTCTGACAAAA+AGG | + | chr6_2:78879249-78879268 | Msa0930080:CDS | 35.0% |
| !! | ACCGTTAGTTCTGACAAAAA+GGG | + | chr6_2:78879250-78879269 | Msa0930080:CDS | 35.0% |
| ! | ACCCTTTTTGTCAGAACTAA+CGG | - | chr6_2:78879254-78879273 | None:intergenic | 35.0% |
| ATCATATTCGATGGAAAGAC+TGG | + | chr6_2:78879274-78879293 | Msa0930080:CDS | 35.0% | |
| !! | TAGCTTACTTGTTTTCCATC+AGG | - | chr6_2:78879367-78879386 | None:intergenic | 35.0% |
| ! | TTTATTGATTATGGCAGGTC+TGG | + | chr6_2:78879401-78879420 | Msa0930080:intron | 35.0% |
| GAGAGACAAATACGTGAAAA+TGG | - | chr6_2:78879440-78879459 | None:intergenic | 35.0% | |
| CATAGAAGTTATTCGAGCTA+AGG | + | chr6_2:78879635-78879654 | Msa0930080:intron | 35.0% | |
| !!! | ATTTTTGGCACAACAGTCTA+AGG | + | chr6_2:78879948-78879967 | Msa0930080:intron | 35.0% |
| !!! | AACAGTCTAAGGCTTTGTTT+TGG | + | chr6_2:78879959-78879978 | Msa0930080:intron | 35.0% |
| !!! | TAAGGCTTTGTTTTGGAGTT+TGG | + | chr6_2:78879966-78879985 | Msa0930080:intron | 35.0% |
| ! | GAACTCCAAAAGTACATTGA+CGG | - | chr6_2:78880166-78880185 | None:intergenic | 35.0% |
| !!! | CTTTTGGAGTTCCCATATAT+TGG | + | chr6_2:78880174-78880193 | Msa0930080:intron | 35.0% |
| ATAAATCTCATTCAAGGTGG+GGG | + | chr6_2:78880221-78880240 | Msa0930080:intron | 35.0% | |
| GAAGATAAAGGAGGAGTAAA+GGG | - | chr6_2:78880267-78880286 | None:intergenic | 35.0% | |
| TGAAGATAAAGGAGGAGTAA+AGG | - | chr6_2:78880268-78880287 | None:intergenic | 35.0% | |
| !! | GATTTTGTTTGAGAGTTTGG+AGG | - | chr6_2:78880309-78880328 | None:intergenic | 35.0% |
| AATGACTAGTATAGCAAAGG+GGG | - | chr6_2:78880434-78880453 | None:intergenic | 35.0% | |
| TGAAGATCAGATGTCTAACA+GGG | - | chr6_2:78880482-78880501 | None:intergenic | 35.0% | |
| ! | TGACAAGTCTGCAAAAGTAT+GGG | + | chr6_2:78880538-78880557 | Msa0930080:CDS | 35.0% |
| ! | AAAAGTATGGGACATATCTG+AGG | + | chr6_2:78880550-78880569 | Msa0930080:CDS | 35.0% |
| GACATATCTGAGGATAATAG+TGG | + | chr6_2:78880560-78880579 | Msa0930080:CDS | 35.0% | |
| ! | TATCTTGTCACTGTTTCTCT+TGG | + | chr6_2:78880662-78880681 | Msa0930080:CDS | 35.0% |
| ATATGTCCTGAAAACGATGT+CGG | - | chr6_2:78880731-78880750 | None:intergenic | 35.0% | |
| ! | GTTACTTCTGAGAATGGTTA+AGG | - | chr6_2:78880768-78880787 | None:intergenic | 35.0% |
| ATTCAAGGGATTGGATATAG+CGG | + | chr6_2:78880836-78880855 | Msa0930080:CDS | 35.0% | |
| TAGCGGTAAATTACAAAGGA+AGG | + | chr6_2:78880853-78880872 | Msa0930080:CDS | 35.0% | |
| GAAGAAGAGATTGTTATGTC+TGG | + | chr6_2:78880908-78880927 | Msa0930080:CDS | 35.0% | |
| TTAAATGCAAACGACAAGCA+AGG | - | chr6_2:78881046-78881065 | None:intergenic | 35.0% | |
| CGAAACATTTCTCTCTATAC+GGG | + | chr6_2:78881453-78881472 | Msa0930080:intron | 35.0% | |
| ATGCATGTCTTGATATTACG+TGG | + | chr6_2:78881556-78881575 | Msa0930080:intron | 35.0% | |
| AAAGGAAATGAAGGAGTAAG+AGG | - | chr6_2:78881693-78881712 | None:intergenic | 35.0% | |
| ACAGAAGAGAAAGGAAATGA+AGG | - | chr6_2:78881702-78881721 | None:intergenic | 35.0% | |
| ATCTAGTTGACAGAAGAGAA+AGG | - | chr6_2:78881711-78881730 | None:intergenic | 35.0% | |
| TCTCTTCTGTCAACTAGATA+AGG | + | chr6_2:78881712-78881731 | Msa0930080:intron | 35.0% | |
| AGTGCAACACTAAAATCCTT+TGG | - | chr6_2:78881798-78881817 | None:intergenic | 35.0% | |
| TTAATCGAGAAGCTGTTGTT+TGG | + | chr6_2:78882096-78882115 | Msa0930080:CDS | 35.0% | |
| ! | TAATCGAGAAGCTGTTGTTT+GGG | + | chr6_2:78882097-78882116 | Msa0930080:CDS | 35.0% |
| TAGTACTAGTACTCACATCT+CGG | - | chr6_2:78882133-78882152 | None:intergenic | 35.0% | |
| CAGGAAACAAAGTGAAAACA+CGG | + | chr6_2:78882285-78882304 | Msa0930080:intron | 35.0% | |
| ! | TATTTCTATTAGCCACAGGT+TGG | - | chr6_2:78882589-78882608 | None:intergenic | 35.0% |
| ! | ATGGTATTTCTATTAGCCAC+AGG | - | chr6_2:78882593-78882612 | None:intergenic | 35.0% |
| ! | GAATATAGTTTGGTTAGCTC+AGG | + | chr6_2:78882659-78882678 | Msa0930080:CDS | 35.0% |
| CCTTTACAACTTGATCTTCA+CGG | - | chr6_2:78882722-78882741 | None:intergenic | 35.0% | |
| ! | CGTGAAGATCAAGTTGTAAA+GGG | + | chr6_2:78882720-78882739 | Msa0930080:exon | 35.0% |
| ! | ATCAAGTTGTAAAGGGAAAG+TGG | + | chr6_2:78882727-78882746 | Msa0930080:three_prime_UTR | 35.0% |
| ! | TCAAGTTGTAAAGGGAAAGT+GGG | + | chr6_2:78882728-78882747 | Msa0930080:three_prime_UTR | 35.0% |
| !!! | GACTTTTGGAAGCATTGTAT+AGG | - | chr6_2:78882784-78882803 | None:intergenic | 35.0% |
| ! | CAAAAGCTCACTTGTCTTTT+AGG | - | chr6_2:78882860-78882879 | None:intergenic | 35.0% |
| ! | CTATTGATTGTGCGATATGA+AGG | + | chr6_2:78882949-78882968 | Msa0930080:three_prime_UTR | 35.0% |
| TTGATTCCCTGTAATGTACT+TGG | - | chr6_2:78883082-78883101 | None:intergenic | 35.0% | |
| ! | AATCCCTGATGTTCTCATTT+TGG | + | chr6_2:78883115-78883134 | Msa0930080:three_prime_UTR | 35.0% |
| ! | ATTTTCACCCAACGGTGAAT+GGG | + | chr6_2:78876481-78876500 | Msa0930080:CDS | 40.0% |
| AAGGAGTTTCGTGTTCTTTC+TGG | + | chr6_2:78876569-78876588 | Msa0930080:CDS | 40.0% | |
| AGTTTCGTGTTCTTTCTGGA+AGG | + | chr6_2:78876573-78876592 | Msa0930080:CDS | 40.0% | |
| CAATTTCTGCAATCGATAGG+TGG | + | chr6_2:78877241-78877260 | Msa0930080:intron | 40.0% | |
| AACTCAAAACTCGTCTTGAG+TGG | - | chr6_2:78877299-78877318 | None:intergenic | 40.0% | |
| TTTAAGCAATCTCGCAGGTA+TGG | + | chr6_2:78877405-78877424 | Msa0930080:intron | 40.0% | |
| GTATGGTGTGAGAAACTCAA+TGG | + | chr6_2:78877422-78877441 | Msa0930080:intron | 40.0% | |
| ! | CTCTCCATGCATTTTTGTGA+AGG | + | chr6_2:78877558-78877577 | Msa0930080:intron | 40.0% |
| CGATCTAGTAAAGAGAAAGG+GGG | - | chr6_2:78877935-78877954 | None:intergenic | 40.0% | |
| !! | AAATTGGTGCTACAGCAGTT+GGG | - | chr6_2:78878592-78878611 | None:intergenic | 40.0% |
| !! | AAAATTGGTGCTACAGCAGT+TGG | - | chr6_2:78878593-78878612 | None:intergenic | 40.0% |
| ATTGCACCATGAAATTGGAG+GGG | - | chr6_2:78878647-78878666 | None:intergenic | 40.0% | |
| GAATTGCACCATGAAATTGG+AGG | - | chr6_2:78878649-78878668 | None:intergenic | 40.0% | |
| CCTGAATTGCACCATGAAAT+TGG | - | chr6_2:78878652-78878671 | None:intergenic | 40.0% | |
| CCAATTTCATGGTGCAATTC+AGG | + | chr6_2:78878649-78878668 | Msa0930080:intron | 40.0% | |
| TAAGTTAGCGTCTGTGATGA+AGG | + | chr6_2:78878776-78878795 | Msa0930080:intron | 40.0% | |
| ! | TGGCAATGATGAGGATTTTC+TGG | - | chr6_2:78878935-78878954 | None:intergenic | 40.0% |
| CTGAATTCTCATTAGACGTC+AGG | + | chr6_2:78878999-78879018 | Msa0930080:intron | 40.0% | |
| ATTAGACGTCAGGGTAAAAC+TGG | + | chr6_2:78879009-78879028 | Msa0930080:intron | 40.0% | |
| TTAGACGTCAGGGTAAAACT+GGG | + | chr6_2:78879010-78879029 | Msa0930080:intron | 40.0% | |
| TGTGTGAGATATTCTCCAGA+TGG | + | chr6_2:78879214-78879233 | Msa0930080:CDS | 40.0% | |
| ATCGGTGAGTTATCTTCTGA+AGG | + | chr6_2:78879304-78879323 | Msa0930080:CDS | 40.0% | |
| CAGCATAAATACTGCCAGTA+TGG | - | chr6_2:78879333-78879352 | None:intergenic | 40.0% | |
| GCAGTATTTATGCTGTTAGC+TGG | + | chr6_2:78879338-78879357 | Msa0930080:CDS | 40.0% | |
| AGTTATTCGAGCTAAGGGAT+AGG | + | chr6_2:78879641-78879660 | Msa0930080:intron | 40.0% | |
| ! | TCCAAAAGTACATTGACGGA+GGG | - | chr6_2:78880162-78880181 | None:intergenic | 40.0% |
| TAAAGGAGGAGTAAAGGGAA+GGG | - | chr6_2:78880262-78880281 | None:intergenic | 40.0% | |
| ATAAAGGAGGAGTAAAGGGA+AGG | - | chr6_2:78880263-78880282 | None:intergenic | 40.0% | |
| CTGAAGATCAGATGTCTAAC+AGG | - | chr6_2:78880483-78880502 | None:intergenic | 40.0% | |
| CTGACAAGTCTGCAAAAGTA+TGG | + | chr6_2:78880537-78880556 | Msa0930080:CDS | 40.0% | |
| ! | ATCTGAGGATAATAGTGGGA+AGG | + | chr6_2:78880565-78880584 | Msa0930080:CDS | 40.0% |
| !! | ACATTGATTTGTTCTGCCTC+TGG | + | chr6_2:78880596-78880615 | Msa0930080:CDS | 40.0% |
| GAGTTGAAGACATGCTTGTA+GGG | + | chr6_2:78880621-78880640 | Msa0930080:CDS | 40.0% | |
| CAAGATAATCGTTCAACCAC+AGG | - | chr6_2:78880649-78880668 | None:intergenic | 40.0% | |
| ! | TTGTCACTGTTTCTCTTGGT+GGG | + | chr6_2:78880666-78880685 | Msa0930080:CDS | 40.0% |
| TATGTCCTGAAAACGATGTC+GGG | - | chr6_2:78880730-78880749 | None:intergenic | 40.0% | |
| ! | ACTTCTGAGAATGGTTAAGG+AGG | - | chr6_2:78880765-78880784 | None:intergenic | 40.0% |
| ! | TCTAGGGTTACTTCTGAGAA+TGG | - | chr6_2:78880774-78880793 | None:intergenic | 40.0% |
| CTCCTGTCTTGTAGTTATGA+TGG | + | chr6_2:78880797-78880816 | Msa0930080:CDS | 40.0% | |
| AGCCATCATAACTACAAGAC+AGG | - | chr6_2:78880802-78880821 | None:intergenic | 40.0% | |
| ! | GTTAAGTGGATTCAAGGGAT+TGG | + | chr6_2:78880827-78880846 | Msa0930080:CDS | 40.0% |
| AGTGCTTCATGGAGATTTCT+AGG | - | chr6_2:78881143-78881162 | None:intergenic | 40.0% | |
| ! | AGAAATCTCCATGAAGCACT+TGG | + | chr6_2:78881143-78881162 | Msa0930080:intron | 40.0% |
| CACACGAGACAATTTCTGAT+TGG | + | chr6_2:78881245-78881264 | Msa0930080:intron | 40.0% | |
| CTTCTGTCAACTAGATAAGG+CGG | + | chr6_2:78881715-78881734 | Msa0930080:intron | 40.0% | |
| TTCTGTCAACTAGATAAGGC+GGG | + | chr6_2:78881716-78881735 | Msa0930080:intron | 40.0% | |
| ! | ATAAGGCGGGTTTCTTTACA+TGG | + | chr6_2:78881729-78881748 | Msa0930080:CDS | 40.0% |
| ! | TAAGGCGGGTTTCTTTACAT+GGG | + | chr6_2:78881730-78881749 | Msa0930080:CDS | 40.0% |
| GATGCTGAAGCCATTGATAT+CGG | + | chr6_2:78881765-78881784 | Msa0930080:CDS | 40.0% | |
| ! | TGGTTGACTTCCGATATCAA+TGG | - | chr6_2:78881778-78881797 | None:intergenic | 40.0% |
| TGATATCGGAAGTCAACCAA+AGG | + | chr6_2:78881779-78881798 | Msa0930080:CDS | 40.0% | |
| GATGGAAGTGAAGCCATTAT+TGG | + | chr6_2:78881936-78881955 | Msa0930080:CDS | 40.0% | |
| AGACTGTCCTTGAGAAACAT+AGG | + | chr6_2:78882015-78882034 | Msa0930080:CDS | 40.0% | |
| GACTGTCCTTGAGAAACATA+GGG | + | chr6_2:78882016-78882035 | Msa0930080:CDS | 40.0% | |
| ACTGTCCTTGAGAAACATAG+GGG | + | chr6_2:78882017-78882036 | Msa0930080:CDS | 40.0% | |
| AGTACTAGTACTCACATCTC+GGG | - | chr6_2:78882132-78882151 | None:intergenic | 40.0% | |
| GACAATTTATCCGTGCAGTA+TGG | - | chr6_2:78882493-78882512 | None:intergenic | 40.0% | |
| CACGGATAAATTGTCTTGCT+TGG | + | chr6_2:78882498-78882517 | Msa0930080:CDS | 40.0% | |
| TAGCAATCCTACTGCTATCA+GGG | - | chr6_2:78882526-78882545 | None:intergenic | 40.0% | |
| ATATGAGATTGACCAACCTG+TGG | + | chr6_2:78882574-78882593 | Msa0930080:CDS | 40.0% | |
| TACAACTTGATCTTCACGGA+GGG | - | chr6_2:78882718-78882737 | None:intergenic | 40.0% | |
| TTACAACTTGATCTTCACGG+AGG | - | chr6_2:78882719-78882738 | None:intergenic | 40.0% | |
| ! | CCGTGAAGATCAAGTTGTAA+AGG | + | chr6_2:78882719-78882738 | Msa0930080:exon | 40.0% |
| TTATCACCCCAAGTTAGAGA+GGG | + | chr6_2:78882827-78882846 | Msa0930080:three_prime_UTR | 40.0% | |
| AAACATCCCCTCTCTAACTT+GGG | - | chr6_2:78882837-78882856 | None:intergenic | 40.0% | |
| AATGCAGTGCACGATGATGA+TGG | - | chr6_2:78876250-78876269 | None:intergenic | 45.0% | |
| ATCTTTCAAGATGAGCTCGG+TGG | + | chr6_2:78876274-78876293 | Msa0930080:exon | 45.0% | |
| ! | GTAGGTGATGGTGTTGGATT+TGG | - | chr6_2:78876369-78876388 | None:intergenic | 45.0% |
| ! | ATTGGTGTAGGTGATGGTGT+TGG | - | chr6_2:78876375-78876394 | None:intergenic | 45.0% |
| CATGATAACCGATCTGGCAT+TGG | - | chr6_2:78876393-78876412 | None:intergenic | 45.0% | |
| GTAAGCATGTTCGCCATAGA+CGG | - | chr6_2:78876444-78876463 | None:intergenic | 45.0% | |
| ! | GATTTTCACCCAACGGTGAA+TGG | + | chr6_2:78876480-78876499 | Msa0930080:CDS | 45.0% |
| GAAGGATCGATGATCTTCAG+TGG | + | chr6_2:78876591-78876610 | Msa0930080:CDS | 45.0% | |
| GCGACAATTCTGATACCATC+AGG | - | chr6_2:78876620-78876639 | None:intergenic | 45.0% | |
| ! | GGTATCAGAATTGTCGCTTC+TGG | + | chr6_2:78876623-78876642 | Msa0930080:CDS | 45.0% |
| CAATCGATAGGTGGGATTCT+GGG | + | chr6_2:78877250-78877269 | Msa0930080:intron | 45.0% | |
| !! | TGGGATTCTGGGACTAATGT+TGG | + | chr6_2:78877261-78877280 | Msa0930080:CDS | 45.0% |
| ! | ACAATGCGAAAAGGCCTTGT+AGG | - | chr6_2:78877333-78877352 | None:intergenic | 45.0% |
| GACAAGAAAATCCTCTCCAC+AGG | - | chr6_2:78877358-78877377 | None:intergenic | 45.0% | |
| TGGTGTGAGAAACTCAATGG+CGG | + | chr6_2:78877425-78877444 | Msa0930080:intron | 45.0% | |
| AAAGACACACACATAGGACC+TGG | + | chr6_2:78878504-78878523 | Msa0930080:intron | 45.0% | |
| TCTAACCCCCTCCAATTTCA+TGG | + | chr6_2:78878638-78878657 | Msa0930080:intron | 45.0% | |
| TTGCACCATGAAATTGGAGG+GGG | - | chr6_2:78878646-78878665 | None:intergenic | 45.0% | |
| GGAAAGACTGGAGAGAAGAT+CGG | + | chr6_2:78879286-78879305 | Msa0930080:CDS | 45.0% | |
| ! | GGTGAGTTATCTTCTGAAGG+TGG | + | chr6_2:78879307-78879326 | Msa0930080:CDS | 45.0% |
| !!! | GGCTTTGTTTTGGAGTTTGG+AGG | + | chr6_2:78879969-78879988 | Msa0930080:intron | 45.0% |
| TGGAGTTTGGAGGAAAACAG+TGG | + | chr6_2:78879979-78879998 | Msa0930080:intron | 45.0% | |
| GGAGTTTGGAGGAAAACAGT+GGG | + | chr6_2:78879980-78879999 | Msa0930080:intron | 45.0% | |
| TTTGGAGGAAAACAGTGGGA+GGG | + | chr6_2:78879984-78880003 | Msa0930080:intron | 45.0% | |
| ! | CTCCAAAAGTACATTGACGG+AGG | - | chr6_2:78880163-78880182 | None:intergenic | 45.0% |
| TGTTTGAGAGTTTGGAGGGA+GGG | - | chr6_2:78880304-78880323 | None:intergenic | 45.0% | |
| TTGTTTGAGAGTTTGGAGGG+AGG | - | chr6_2:78880305-78880324 | None:intergenic | 45.0% | |
| !! | TTGATTTGTTCTGCCTCTGG+TGG | + | chr6_2:78880599-78880618 | Msa0930080:CDS | 45.0% |
| GGAGTTGAAGACATGCTTGT+AGG | + | chr6_2:78880620-78880639 | Msa0930080:CDS | 45.0% | |
| ! | CTTGTCACTGTTTCTCTTGG+TGG | + | chr6_2:78880665-78880684 | Msa0930080:CDS | 45.0% |
| ATGTCCTGAAAACGATGTCG+GGG | - | chr6_2:78880729-78880748 | None:intergenic | 45.0% | |
| !! | TACAAGACAGGAGCACTCTA+GGG | - | chr6_2:78880790-78880809 | None:intergenic | 45.0% |
| AGTGTGCGGGACAAATTTCA+TGG | + | chr6_2:78881626-78881645 | Msa0930080:intron | 45.0% | |
| ! | AAGGCGGGTTTCTTTACATG+GGG | + | chr6_2:78881731-78881750 | Msa0930080:CDS | 45.0% |
| TCTTTACATGGGGATCAGTG+CGG | + | chr6_2:78881741-78881760 | Msa0930080:CDS | 45.0% | |
| GGAAGTGAAGCCATTATTGG+TGG | + | chr6_2:78881939-78881958 | Msa0930080:CDS | 45.0% | |
| ! | TGAAGCCATTATTGGTGGTC+AGG | + | chr6_2:78881944-78881963 | Msa0930080:CDS | 45.0% |
| ACCATCCTGACCACCAATAA+TGG | - | chr6_2:78881952-78881971 | None:intergenic | 45.0% | |
| TAGCACCCCTATGTTTCTCA+AGG | - | chr6_2:78882025-78882044 | None:intergenic | 45.0% | |
| ACATGCTGTACCATACTGCA+CGG | + | chr6_2:78882480-78882499 | Msa0930080:CDS | 45.0% | |
| AGCAATCCTACTGCTATCAG+GGG | - | chr6_2:78882525-78882544 | None:intergenic | 45.0% | |
| GTAGCAATCCTACTGCTATC+AGG | - | chr6_2:78882527-78882546 | None:intergenic | 45.0% | |
| GATAGCAGTAGGATTGCTAC+AGG | + | chr6_2:78882527-78882546 | Msa0930080:CDS | 45.0% | |
| !! | ACCATAAAGGGTGCTCACTT+AGG | + | chr6_2:78882608-78882627 | Msa0930080:CDS | 45.0% |
| ACCTAAGTGAGCACCCTTTA+TGG | - | chr6_2:78882612-78882631 | None:intergenic | 45.0% | |
| !! | ATAAAGGGTGCTCACTTAGG+TGG | + | chr6_2:78882611-78882630 | Msa0930080:CDS | 45.0% |
| !! | TAAAGGGTGCTCACTTAGGT+GGG | + | chr6_2:78882612-78882631 | Msa0930080:CDS | 45.0% |
| CTCACTTAGGTGGGGTTTAT+GGG | + | chr6_2:78882621-78882640 | Msa0930080:CDS | 45.0% | |
| ! | AGGATGCTTTTATCCGTGTC+TGG | + | chr6_2:78882684-78882703 | Msa0930080:CDS | 45.0% |
| ACAACTTGATCTTCACGGAG+GGG | - | chr6_2:78882717-78882736 | None:intergenic | 45.0% | |
| CTTATCACCCCAAGTTAGAG+AGG | + | chr6_2:78882826-78882845 | Msa0930080:three_prime_UTR | 45.0% | |
| TATCACCCCAAGTTAGAGAG+GGG | + | chr6_2:78882828-78882847 | Msa0930080:three_prime_UTR | 45.0% | |
| AACATCCCCTCTCTAACTTG+GGG | - | chr6_2:78882836-78882855 | None:intergenic | 45.0% | |
| GAAACATCCCCTCTCTAACT+TGG | - | chr6_2:78882838-78882857 | None:intergenic | 45.0% | |
| !! | TTTATAAAAAAAAAAGTTAT+TGG | - | chr6_2:78878028-78878047 | None:intergenic | 5.0% |
| !!! | ATATTATTTTTAAAAAAACA+TGG | + | chr6_2:78878306-78878325 | Msa0930080:intron | 5.0% |
| !! | GTGCACGATGATGATGGTGA+TGG | - | chr6_2:78876244-78876263 | None:intergenic | 50.0% |
| !! | TCTGGCATTGGTGTAGGTGA+TGG | - | chr6_2:78876381-78876400 | None:intergenic | 50.0% |
| CACCTACACCAATGCCAGAT+CGG | + | chr6_2:78876382-78876401 | Msa0930080:CDS | 50.0% | |
| !! | AACCGATCTGGCATTGGTGT+AGG | - | chr6_2:78876387-78876406 | None:intergenic | 50.0% |
| CATAGACGGAGACATGAAGG+GGG | - | chr6_2:78876430-78876449 | None:intergenic | 50.0% | |
| CCATAGACGGAGACATGAAG+GGG | - | chr6_2:78876431-78876450 | None:intergenic | 50.0% | |
| GCCATAGACGGAGACATGAA+GGG | - | chr6_2:78876432-78876451 | None:intergenic | 50.0% | |
| GTTGGGTGAAAATCGAGCGA+CGG | - | chr6_2:78876474-78876493 | None:intergenic | 50.0% | |
| ! | GTCGCTCGATTTTCACCCAA+CGG | + | chr6_2:78876473-78876492 | Msa0930080:CDS | 50.0% |
| GATGCAACCCATTCACCGTT+GGG | - | chr6_2:78876491-78876510 | None:intergenic | 50.0% | |
| AGATGCAACCCATTCACCGT+TGG | - | chr6_2:78876492-78876511 | None:intergenic | 50.0% | |
| GATCTTCAGTGGTCTCCTGA+TGG | + | chr6_2:78876602-78876621 | Msa0930080:CDS | 50.0% | |
| GTCGCTTCTGGTGAAGCTAA+AGG | + | chr6_2:78876635-78876654 | Msa0930080:CDS | 50.0% | |
| GCAATCGATAGGTGGGATTC+TGG | + | chr6_2:78877249-78877268 | Msa0930080:intron | 50.0% | |
| CCACAGGTGACAATGCGAAA+AGG | - | chr6_2:78877342-78877361 | None:intergenic | 50.0% | |
| ! | CCTTTTCGCATTGTCACCTG+TGG | + | chr6_2:78877339-78877358 | Msa0930080:CDS | 50.0% |
| GGTAGCAAAGTGAGCTTACG+TGG | - | chr6_2:78877835-78877854 | None:intergenic | 50.0% | |
| TACTAGATCGTCTACCCGTG+CGG | + | chr6_2:78877945-78877964 | Msa0930080:intron | 50.0% | |
| CTGATGACACGGGACATGTA+TGG | - | chr6_2:78878703-78878722 | None:intergenic | 50.0% | |
| GAGCTTACGTGGCAATGATG+AGG | - | chr6_2:78878944-78878963 | None:intergenic | 50.0% | |
| GGTAGCAAAGTGAGCTTACG+TGG | - | chr6_2:78877835-78877854 | None:intergenic | 50.0% | |
| ! | TCTTCTGAAGGTGGCCATAC+TGG | + | chr6_2:78879316-78879335 | Msa0930080:CDS | 50.0% |
| GTTTGGAGGAAAACAGTGGG+AGG | + | chr6_2:78879983-78880002 | Msa0930080:intron | 50.0% | |
| TTGGAGGAAAACAGTGGGAG+GGG | + | chr6_2:78879985-78880004 | Msa0930080:intron | 50.0% | |
| GAGGGGAGGAAAGAAAAGGT+AGG | + | chr6_2:78880002-78880021 | Msa0930080:intron | 50.0% | |
| AGTACATTGACGGAGGGCTT+TGG | - | chr6_2:78880156-78880175 | None:intergenic | 50.0% | |
| ! | GCCCTCCGTCAATGTACTTT+TGG | + | chr6_2:78880158-78880177 | Msa0930080:intron | 50.0% |
| GAGGAGTAAAGGGAAGGGAA+AGG | - | chr6_2:78880257-78880276 | None:intergenic | 50.0% | |
| !! | GAGGGCTCTGAAGATAAAGG+AGG | - | chr6_2:78880276-78880295 | None:intergenic | 50.0% |
| GTTTGAGAGTTTGGAGGGAG+GGG | - | chr6_2:78880303-78880322 | None:intergenic | 50.0% | |
| CATGTCTTCAACTCCACCAG+AGG | - | chr6_2:78880615-78880634 | None:intergenic | 50.0% | |
| ! | AAAGCCCCGACATCGTTTTC+AGG | + | chr6_2:78880722-78880741 | Msa0930080:CDS | 50.0% |
| !! | CTACAAGACAGGAGCACTCT+AGG | - | chr6_2:78880791-78880810 | None:intergenic | 50.0% |
| CTCTTCTTCTGCAGCTGCTA+AGG | - | chr6_2:78880897-78880916 | None:intergenic | 50.0% | |
| TGCACTAGCCAAGTGCTTCA+TGG | - | chr6_2:78881154-78881173 | None:intergenic | 50.0% | |
| GCATCTGTTGTCTCGTCTGA+TGG | + | chr6_2:78881918-78881937 | Msa0930080:CDS | 50.0% | |
| ! | GCCATTATTGGTGGTCAGGA+TGG | + | chr6_2:78881948-78881967 | Msa0930080:CDS | 50.0% |
| ACTAGTACTCACATCTCGGG+AGG | - | chr6_2:78882129-78882148 | None:intergenic | 50.0% | |
| !! | AAAGGGTGCTCACTTAGGTG+GGG | + | chr6_2:78882613-78882632 | Msa0930080:CDS | 50.0% |
| GCTCACTTAGGTGGGGTTTA+TGG | + | chr6_2:78882620-78882639 | Msa0930080:CDS | 50.0% | |
| ! | TAGTTTGGTTAGCTCAGGCG+AGG | + | chr6_2:78882664-78882683 | Msa0930080:CDS | 50.0% |
| GAGGGGTTATCTTCCAGACA+CGG | - | chr6_2:78882700-78882719 | None:intergenic | 50.0% | |
| GCGACTTGCAAGCTTCTGTT+TGG | + | chr6_2:78882920-78882939 | Msa0930080:three_prime_UTR | 50.0% | |
| ! | GATGAGCTCGGTGGAGTTGA+CGG | + | chr6_2:78876283-78876302 | Msa0930080:exon | 55.0% |
| ! | ACGTTCTGTTGAAGGCGTGC+AGG | - | chr6_2:78876318-78876337 | None:intergenic | 55.0% |
| TGCACGCCTTCAACAGAACG+TGG | + | chr6_2:78876317-78876336 | Msa0930080:CDS | 55.0% | |
| GGCCGTGGTATTCTCATCTC+CGG | + | chr6_2:78876338-78876357 | Msa0930080:CDS | 55.0% | |
| CGCCGGAGATGAGAATACCA+CGG | - | chr6_2:78876343-78876362 | None:intergenic | 55.0% | |
| ! | GGTGTTGGATTTGGAGTCGC+CGG | - | chr6_2:78876360-78876379 | None:intergenic | 55.0% |
| CGGAGACATGAAGGGGGTTA+TGG | - | chr6_2:78876424-78876443 | None:intergenic | 55.0% | |
| CCCCTTCATGTCTCCGTCTA+TGG | + | chr6_2:78876428-78876447 | Msa0930080:CDS | 55.0% | |
| CGCCATAGACGGAGACATGA+AGG | - | chr6_2:78876433-78876452 | None:intergenic | 55.0% | |
| AAAATCGAGCGACGGTGGCA+GGG | - | chr6_2:78876466-78876485 | None:intergenic | 55.0% | |
| GTTGCATCTGCTGACGTGTC+AGG | + | chr6_2:78876503-78876522 | Msa0930080:CDS | 55.0% | |
| ! | TGTCAGGTACCGTGAGGATC+TGG | + | chr6_2:78876519-78876538 | Msa0930080:CDS | 55.0% |
| ! | GTCAGGTACCGTGAGGATCT+GGG | + | chr6_2:78876520-78876539 | Msa0930080:CDS | 55.0% |
| ! | TCAGGTACCGTGAGGATCTG+GGG | + | chr6_2:78876521-78876540 | Msa0930080:CDS | 55.0% |
| TCGCATTGTCACCTGTGGAG+AGG | + | chr6_2:78877344-78877363 | Msa0930080:CDS | 55.0% | |
| GCTGTTAGCTGGAGTCCTGA+TGG | + | chr6_2:78879349-78879368 | Msa0930080:CDS | 55.0% | |
| GTGGGAGGGGAGGAAAGAAA+AGG | + | chr6_2:78879998-78880017 | Msa0930080:intron | 55.0% | |
| !! | GGGGAGGGCTCTGAAGATAA+AGG | - | chr6_2:78880279-78880298 | None:intergenic | 55.0% |
| ! | ACATGCTTGTAGGGTGCCTG+TGG | + | chr6_2:78880630-78880649 | Msa0930080:CDS | 55.0% |
| TCAGGAGTTGTCATGCTGCG+TGG | + | chr6_2:78881852-78881871 | Msa0930080:CDS | 55.0% | |
| TACTCACATCTCGGGAGGCA+CGG | - | chr6_2:78882124-78882143 | None:intergenic | 55.0% | |
| CTTGGTCCCCTGATAGCAGT+AGG | + | chr6_2:78882516-78882535 | Msa0930080:CDS | 55.0% | |
| CCACGGCCACGTTCTGTTGA+AGG | - | chr6_2:78876326-78876345 | None:intergenic | 60.0% | |
| CCTTCAACAGAACGTGGCCG+TGG | + | chr6_2:78876323-78876342 | Msa0930080:CDS | 60.0% | |
| GAAAATCGAGCGACGGTGGC+AGG | - | chr6_2:78876467-78876486 | None:intergenic | 60.0% | |
| GGGTGAAAATCGAGCGACGG+TGG | - | chr6_2:78876471-78876490 | None:intergenic | 60.0% | |
| ! | CTGACGTGTCAGGTACCGTG+AGG | + | chr6_2:78876513-78876532 | Msa0930080:CDS | 60.0% |
| GCGAGTTCCCCAGATCCTCA+CGG | - | chr6_2:78876531-78876550 | None:intergenic | 60.0% | |
| GAGGAAAACAGTGGGAGGGG+AGG | + | chr6_2:78879988-78880007 | Msa0930080:intron | 60.0% | |
| AGAGTTTGGAGGGAGGGGAG+GGG | - | chr6_2:78880298-78880317 | None:intergenic | 60.0% | |
| GAGAGTTTGGAGGGAGGGGA+GGG | - | chr6_2:78880299-78880318 | None:intergenic | 60.0% | |
| TGAGAGTTTGGAGGGAGGGG+AGG | - | chr6_2:78880300-78880319 | None:intergenic | 60.0% | |
| TTTGGAGGGAGGGGAGGGGA+GGG | - | chr6_2:78880294-78880313 | None:intergenic | 65.0% | |
| GTTTGGAGGGAGGGGAGGGG+AGG | - | chr6_2:78880295-78880314 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 78876137 | 78883294 | 78876137 | ID=Msa0930080;Name=Msa0930080 |
| chr6_2 | mRNA | 78876137 | 78883294 | 78876137 | ID=Msa0930080-mRNA-1;Parent=Msa0930080;Name=Msa0930080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|6|570|611 |
| chr6_2 | exon | 78876137 | 78876681 | 78876137 | ID=Msa0930080-mRNA-1:exon:13347;Parent=Msa0930080-mRNA-1 |
| chr6_2 | exon | 78877260 | 78877421 | 78877260 | ID=Msa0930080-mRNA-1:exon:13348;Parent=Msa0930080-mRNA-1 |
| chr6_2 | exon | 78879192 | 78879378 | 78879192 | ID=Msa0930080-mRNA-1:exon:13349;Parent=Msa0930080-mRNA-1 |
| chr6_2 | exon | 78880521 | 78880943 | 78880521 | ID=Msa0930080-mRNA-1:exon:13350;Parent=Msa0930080-mRNA-1 |
| chr6_2 | exon | 78881729 | 78882136 | 78881729 | ID=Msa0930080-mRNA-1:exon:13351;Parent=Msa0930080-mRNA-1 |
| chr6_2 | exon | 78882467 | 78883294 | 78882467 | ID=Msa0930080-mRNA-1:exon:13352;Parent=Msa0930080-mRNA-1 |
| chr6_2 | five_prime_UTR | 78876137 | 78876283 | 78876137 | ID=Msa0930080-mRNA-1:five_prime_utr;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78876284 | 78876681 | 78876284 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78877260 | 78877421 | 78877260 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78879192 | 78879378 | 78879192 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78880521 | 78880943 | 78880521 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78881729 | 78882136 | 78881729 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | CDS | 78882467 | 78882724 | 78882467 | ID=Msa0930080-mRNA-1:cds;Parent=Msa0930080-mRNA-1 |
| chr6_2 | three_prime_UTR | 78882725 | 78883294 | 78882725 | ID=Msa0930080-mRNA-1:three_prime_utr;Parent=Msa0930080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
