Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575860 | XP_003631126.1 | 90.213 | 470 | 44 | 1 | 3 | 470 | 2 | 471 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575860 | sp|Q6NKX5|POT1B_ARATH | 37.687 | 467 | 270 | 9 | 5 | 467 | 2 | 451 | 8.81e-91 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575860 | G7LE70 | 90.213 | 470 | 44 | 1 | 3 | 470 | 2 | 471 | 0.0 | 884 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0575860 | Msa0929740 | 0.814470 | 1.515391e-51 | -8.615850e-47 |
| Msa0575860 | Msa1354050 | 0.837433 | 5.212974e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575860 | MtrunA17_Chr8g0393131 | 90.213 | 470 | 44 | 1 | 3 | 470 | 2 | 471 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575860 | AT5G06310.1 | 37.687 | 467 | 270 | 9 | 5 | 467 | 2 | 451 | 8.96e-92 | 286 |
| Msa0575860 | AT2G05210.1 | 34.025 | 482 | 280 | 15 | 7 | 468 | 3 | 466 | 1.81e-74 | 242 |
| Msa0575860 | AT2G05210.3 | 34.025 | 482 | 280 | 15 | 7 | 468 | 3 | 466 | 1.81e-74 | 242 |
| Msa0575860 | AT2G05210.2 | 34.025 | 482 | 280 | 15 | 7 | 468 | 3 | 466 | 1.81e-74 | 242 |
| Msa0575860 | AT2G04395.1 | 30.769 | 117 | 78 | 2 | 7 | 120 | 3 | 119 | 1.15e-12 | 65.9 |
Find 115 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTGAGGAATCTGAAAAT+TGG | 0.151989 | 4_1:-79773177 | None:intergenic |
| CAAAGAAGGTTACTTAAATT+TGG | 0.164890 | 4_1:+79773304 | Msa0575860:CDS |
| TCAAGCCTCGCCCACTATTT+TGG | 0.197471 | 4_1:-79775408 | None:intergenic |
| GTGTCCTTAACATTGATAAA+TGG | 0.206024 | 4_1:+79774331 | Msa0575860:CDS |
| TTATGTAAATTATTTGTATT+TGG | 0.230725 | 4_1:+79775606 | Msa0575860:three_prime_UTR |
| CAATCTAACCAATACACTAT+TGG | 0.260118 | 4_1:+79772489 | Msa0575860:five_prime_UTR |
| ATAATTGGTTTCTCTATGTT+TGG | 0.285155 | 4_1:+79773506 | Msa0575860:CDS |
| CTTGTAATACGTAAAGATTC+AGG | 0.289688 | 4_1:-79774627 | None:intergenic |
| ACTTCCCCATACATCAGTTT+TGG | 0.291105 | 4_1:-79775363 | None:intergenic |
| GGGAGTCTGCAAAAGATAAT+TGG | 0.303591 | 4_1:+79773491 | Msa0575860:CDS |
| ATCACCCATGGAGGATTTCT+TGG | 0.307382 | 4_1:-79775314 | None:intergenic |
| GTAGAATTAATTTCATCTTC+AGG | 0.308207 | 4_1:-79774192 | None:intergenic |
| CCGTTCCATTAGTGAACTTT+GGG | 0.331435 | 4_1:-79772748 | None:intergenic |
| CTAAGTTCACGTGTGTTGTT+CGG | 0.336291 | 4_1:+79774935 | Msa0575860:CDS |
| CACATTGTATATATTACATT+TGG | 0.344373 | 4_1:-79773547 | None:intergenic |
| TTTCTAAATACAATTATGAT+TGG | 0.351513 | 4_1:+79775660 | Msa0575860:three_prime_UTR |
| GTGTTTCATCAATCACTCTA+AGG | 0.355891 | 4_1:-79772784 | None:intergenic |
| TAAGTTCACGTGTGTTGTTC+GGG | 0.356727 | 4_1:+79774936 | Msa0575860:CDS |
| GTATGGGGAAGTAGAACTTT+TGG | 0.363372 | 4_1:+79775374 | Msa0575860:CDS |
| TAATTGGTTTCTCTATGTTT+GGG | 0.364161 | 4_1:+79773507 | Msa0575860:CDS |
| ACCTCAAGATACTTCATTGC+TGG | 0.366802 | 4_1:+79773470 | Msa0575860:intron |
| GATTGCAAAATATTTATATA+AGG | 0.376520 | 4_1:-79772471 | None:intergenic |
| AAATCAGGAACAATTGCTAT+TGG | 0.379724 | 4_1:+79774597 | Msa0575860:CDS |
| TTGAGAGTGAATTACCTTGC+AGG | 0.383097 | 4_1:-79773327 | None:intergenic |
| TGACCCATTTATCAATGTTA+AGG | 0.390781 | 4_1:-79774335 | None:intergenic |
| AATCTAACCAATACACTATT+GGG | 0.396018 | 4_1:+79772490 | Msa0575860:five_prime_UTR |
| TCACCCATGGAGGATTTCTT+GGG | 0.397379 | 4_1:-79775313 | None:intergenic |
| AATATTTGACACCAAAATAG+TGG | 0.401530 | 4_1:+79775397 | Msa0575860:CDS |
| TCCGTTCCATTAGTGAACTT+TGG | 0.403303 | 4_1:-79772749 | None:intergenic |
| AGAAAACAGCATTTACTTCC+TGG | 0.404273 | 4_1:-79773013 | None:intergenic |
| ATTGCTGTTGTTATTGAAGC+TGG | 0.413842 | 4_1:+79772722 | Msa0575860:CDS |
| CCTTGAGGAATCTGAAAATT+GGG | 0.414035 | 4_1:-79773176 | None:intergenic |
| TTTGGCGTTCGATAATTTGA+TGG | 0.420640 | 4_1:-79774449 | None:intergenic |
| ATCATAATTGTATTTAGAAA+AGG | 0.423713 | 4_1:-79775657 | None:intergenic |
| TTAAAGTGTATGCAGGACTA+TGG | 0.426620 | 4_1:+79774376 | Msa0575860:CDS |
| TGTCCTTAACATTGATAAAT+GGG | 0.428681 | 4_1:+79774332 | Msa0575860:CDS |
| GAACGAATATCGTTGAAATC+AGG | 0.431437 | 4_1:+79774582 | Msa0575860:CDS |
| ATACCTCCAAAACTGATGTA+TGG | 0.431794 | 4_1:+79775357 | Msa0575860:CDS |
| AAAAGTTATGCTCTCCTACT+AGG | 0.435695 | 4_1:+79774986 | Msa0575860:CDS |
| GGTCTCCCAAAGTTCACTAA+TGG | 0.439154 | 4_1:+79772743 | Msa0575860:CDS |
| CGGACACTCTGACCTTGAAA+TGG | 0.451180 | 4_1:-79772416 | None:intergenic |
| CAAATGTTAACTAGTGTCTC+GGG | 0.451348 | 4_1:-79772442 | None:intergenic |
| AGGAAGTTAGACAGATTACT+TGG | 0.452007 | 4_1:+79775251 | Msa0575860:CDS |
| CTCTTGTTAATAAGTGTTGT+TGG | 0.456093 | 4_1:+79772555 | Msa0575860:five_prime_UTR |
| TACCTCCAAAACTGATGTAT+GGG | 0.462363 | 4_1:+79775358 | Msa0575860:CDS |
| ATTGTATATATTACATTTGG+TGG | 0.462811 | 4_1:-79773544 | None:intergenic |
| TTCTACACGTACATTACATC+CGG | 0.466383 | 4_1:+79774209 | Msa0575860:CDS |
| AGCCTTCCACATGTTTCTCC+TGG | 0.470522 | 4_1:+79772854 | Msa0575860:CDS |
| TGACTACGCGTTACTTCGAT+TGG | 0.475837 | 4_1:+79772661 | Msa0575860:CDS |
| TGGTGACGGTGTTGTGGTAA+AGG | 0.481555 | 4_1:+79775286 | Msa0575860:CDS |
| AGGTTAATCACGATCATGTC+CGG | 0.481568 | 4_1:+79774745 | Msa0575860:CDS |
| AATCCCAAGACTATTGCAAA+AGG | 0.484895 | 4_1:-79775454 | None:intergenic |
| TAATATTATCCTCAGAGAAC+AGG | 0.485182 | 4_1:+79773118 | Msa0575860:CDS |
| GAGGAATGGGTGGAAGGAAA+AGG | 0.485373 | 4_1:+79772627 | Msa0575860:exon |
| CTACCGTTGGCTCAATCTTG+AGG | 0.486330 | 4_1:+79774271 | Msa0575860:CDS |
| AATTTGATGGTCCACATTTG+AGG | 0.487270 | 4_1:-79774436 | None:intergenic |
| CGGGCATTGCAAATATGAAA+AGG | 0.491327 | 4_1:+79775231 | Msa0575860:CDS |
| GATAGATCCCAATAGTGTAT+TGG | 0.492436 | 4_1:-79772497 | None:intergenic |
| TTGTATATATTACATTTGGT+GGG | 0.496921 | 4_1:-79773543 | None:intergenic |
| TGGTTTCTCTATGTTTGGGA+TGG | 0.498067 | 4_1:+79773511 | Msa0575860:CDS |
| TGTCCGGCATCGTACTTTGA+TGG | 0.502519 | 4_1:+79774761 | Msa0575860:CDS |
| TTACTTAAATTTGGCCTGCA+AGG | 0.505621 | 4_1:+79773313 | Msa0575860:CDS |
| TTCTAGCTGTTGGATCCTCT+AGG | 0.508462 | 4_1:-79775029 | None:intergenic |
| CCTCAAGATACTTCATTGCT+GGG | 0.511978 | 4_1:+79773471 | Msa0575860:intron |
| CAACAACACTTATTAACAAG+AGG | 0.511987 | 4_1:-79772554 | None:intergenic |
| AAAGTACGTAGTATATCTCT+TGG | 0.512985 | 4_1:-79774246 | None:intergenic |
| AGTTAACAGAGATAGATGTT+TGG | 0.517110 | 4_1:-79772811 | None:intergenic |
| AAAGCATGGATTCTAGCTGT+TGG | 0.520950 | 4_1:-79775039 | None:intergenic |
| CTTCACCAATTACAAAAGCA+TGG | 0.524475 | 4_1:-79775053 | None:intergenic |
| CTTGGCAAAGGCATAGGCTC+CGG | 0.530366 | 4_1:-79774228 | None:intergenic |
| ATATCTCTTGGCAAAGGCAT+AGG | 0.533528 | 4_1:-79774234 | None:intergenic |
| GTGGAAGGAAAAGGAAAAGT+AGG | 0.534815 | 4_1:+79772636 | Msa0575860:CDS |
| ATACATCTTAAAGTGTATGC+AGG | 0.538402 | 4_1:+79774369 | Msa0575860:CDS |
| CGAAGAAGAATGATATCACC+AGG | 0.546290 | 4_1:-79772872 | None:intergenic |
| CGGAGATGATCTTCCTCTAT+CGG | 0.547270 | 4_1:-79774309 | None:intergenic |
| AAATTGTTAAGCTTAGAAGA+TGG | 0.548899 | 4_1:+79773150 | Msa0575860:CDS |
| CTTGTCATATACTTCCTAGT+AGG | 0.548949 | 4_1:-79775000 | None:intergenic |
| TGTATATATTACATTTGGTG+GGG | 0.549431 | 4_1:-79773542 | None:intergenic |
| GCAAATGTTAACTAGTGTCT+CGG | 0.549823 | 4_1:-79772443 | None:intergenic |
| ACGCTAAGTGAAATCAAAGA+AGG | 0.554472 | 4_1:+79773290 | Msa0575860:CDS |
| TGTTGTTGGTTGAAGTTGAA+AGG | 0.556083 | 4_1:+79772569 | Msa0575860:five_prime_UTR |
| TCTAGCTGTTGGATCCTCTA+GGG | 0.556090 | 4_1:-79775028 | None:intergenic |
| ATCCCAAGACTATTGCAAAA+GGG | 0.558229 | 4_1:-79775453 | None:intergenic |
| TTAACTAGTGTCTCGGGGCA+CGG | 0.560139 | 4_1:-79772436 | None:intergenic |
| TGACACCAAAATAGTGGGCG+AGG | 0.560523 | 4_1:+79775403 | Msa0575860:CDS |
| ATCAAATTATCGAACGCCAA+AGG | 0.563604 | 4_1:+79774451 | Msa0575860:CDS |
| GTGTATGCAGGACTATGGTA+TGG | 0.567558 | 4_1:+79774381 | Msa0575860:CDS |
| GATCTTTGTCCTGTTCTCTG+AGG | 0.570493 | 4_1:-79773127 | None:intergenic |
| CCCAAAGTTCACTAATGGAA+CGG | 0.579548 | 4_1:+79772748 | Msa0575860:CDS |
| AGACCCCAAGAAATCCTCCA+TGG | 0.582960 | 4_1:+79775309 | Msa0575860:CDS |
| CACCCATGGAGGATTTCTTG+GGG | 0.592410 | 4_1:-79775312 | None:intergenic |
| AATCCTCAAGATTGAGCCAA+CGG | 0.594224 | 4_1:-79774274 | None:intergenic |
| GATTCGATATACCTCAAATG+TGG | 0.602882 | 4_1:+79774425 | Msa0575860:CDS |
| GCAGTTAAGAAGACATGACC+AGG | 0.605500 | 4_1:+79772995 | Msa0575860:intron |
| CATCCATCAAAGTACGATGC+CGG | 0.606271 | 4_1:-79774764 | None:intergenic |
| GTTCACGTGTGTTGTTCGGG+TGG | 0.607327 | 4_1:+79774939 | Msa0575860:CDS |
| ATATTTGACACCAAAATAGT+GGG | 0.607462 | 4_1:+79775398 | Msa0575860:CDS |
| CGTAGTATATCTCTTGGCAA+AGG | 0.607655 | 4_1:-79774240 | None:intergenic |
| ATATCGAATCTTTGATTGTG+AGG | 0.610806 | 4_1:-79774412 | None:intergenic |
| TTAATACAAACTATCACCCA+TGG | 0.612169 | 4_1:-79775326 | None:intergenic |
| GGGTGGTAGCAGCAAAGCCA+TGG | 0.613819 | 4_1:+79774956 | Msa0575860:CDS |
| TGAATGTGGTGACGGTGTTG+TGG | 0.623885 | 4_1:+79775280 | Msa0575860:CDS |
| GACCCCAAGAAATCCTCCAT+GGG | 0.630467 | 4_1:+79775310 | Msa0575860:CDS |
| ACCTCCAAAACTGATGTATG+GGG | 0.632813 | 4_1:+79775359 | Msa0575860:CDS |
| GGATGTACTCACTCATTCAG+AGG | 0.636868 | 4_1:+79774782 | Msa0575860:CDS |
| CACCAGGAGAAACATGTGGA+AGG | 0.643881 | 4_1:-79772856 | None:intergenic |
| CTCAAGATTGAGCCAACGGT+AGG | 0.647732 | 4_1:-79774270 | None:intergenic |
| CTTGATATACTGATATGATG+TGG | 0.648106 | 4_1:+79775426 | Msa0575860:exon |
| ATTTATCAATGTTAAGGACA+CGG | 0.661104 | 4_1:-79774329 | None:intergenic |
| ATATCACCAGGAGAAACATG+TGG | 0.669575 | 4_1:-79772860 | None:intergenic |
| TTACTTGGAGTAACTGAATG+TGG | 0.687106 | 4_1:+79775266 | Msa0575860:CDS |
| AAATGTTAACTAGTGTCTCG+GGG | 0.701060 | 4_1:-79772441 | None:intergenic |
| ATACAAACTATCACCCATGG+AGG | 0.711847 | 4_1:-79775323 | None:intergenic |
| GGAGTAACTGAATGTGGTGA+CGG | 0.715250 | 4_1:+79775272 | Msa0575860:CDS |
| TATGACAAGACTGACCCTAG+AGG | 0.735776 | 4_1:+79775014 | Msa0575860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAAATAATAAATGTTT+AGG | + | chr4_1:79773796-79773815 | Msa0575860:intron | 10.0% |
| !! | TTATGTAAATTATTTGTATT+TGG | + | chr4_1:79775606-79775625 | Msa0575860:three_prime_UTR | 10.0% |
| !! | GATTGCAAAATATTTATATA+AGG | - | chr4_1:79772474-79772493 | None:intergenic | 15.0% |
| !! | ACTTCATTTCTTAATATTTA+AGG | + | chr4_1:79773231-79773250 | Msa0575860:intron | 15.0% |
| !! | AATTGTATATGATATCTTAA+CGG | + | chr4_1:79774005-79774024 | Msa0575860:intron | 15.0% |
| !! | TAACAAAAATATAATGACAT+TGG | - | chr4_1:79774535-79774554 | None:intergenic | 15.0% |
| !! | ATCATAATTGTATTTAGAAA+AGG | - | chr4_1:79775660-79775679 | None:intergenic | 15.0% |
| !! | TTTCTAAATACAATTATGAT+TGG | + | chr4_1:79775660-79775679 | Msa0575860:three_prime_UTR | 15.0% |
| !!! | ATTAGTTTTCGTTTTAAAAA+TGG | + | chr4_1:79775683-79775702 | Msa0575860:three_prime_UTR | 15.0% |
| !!! | AACTTTTGTAATTAATGCAT+TGG | - | chr4_1:79772378-79772397 | None:intergenic | 20.0% |
| !! | AAAAAAAAGTTACCATTTCA+AGG | + | chr4_1:79772404-79772423 | Msa0575860:five_prime_UTR | 20.0% |
| !!! | TCTATCTCATTTTGAATATA+AGG | + | chr4_1:79772518-79772537 | Msa0575860:five_prime_UTR | 20.0% |
| !!! | CTATCTCATTTTGAATATAA+GGG | + | chr4_1:79772519-79772538 | Msa0575860:five_prime_UTR | 20.0% |
| !!! | TCTACTTTTGCATTATATAA+AGG | + | chr4_1:79773047-79773066 | Msa0575860:CDS | 20.0% |
| !!! | CTACTTTTGCATTATATAAA+GGG | + | chr4_1:79773048-79773067 | Msa0575860:CDS | 20.0% |
| !!! | TAGTTGAAAAAAGTTGATAA+GGG | - | chr4_1:79773100-79773119 | None:intergenic | 20.0% |
| !!! | TTAGTTGAAAAAAGTTGATA+AGG | - | chr4_1:79773101-79773120 | None:intergenic | 20.0% |
| !! | AAAAAATCGTATTTATCCAA+AGG | - | chr4_1:79773385-79773404 | None:intergenic | 20.0% |
| !! | TTGTATATATTACATTTGGT+GGG | - | chr4_1:79773546-79773565 | None:intergenic | 20.0% |
| !! | ATTGTATATATTACATTTGG+TGG | - | chr4_1:79773547-79773566 | None:intergenic | 20.0% |
| !! | CACATTGTATATATTACATT+TGG | - | chr4_1:79773550-79773569 | None:intergenic | 20.0% |
| !!! | ATTGTATTGTAATTTGTTGA+TGG | + | chr4_1:79773634-79773653 | Msa0575860:intron | 20.0% |
| !!! | AAACATATCAAATTCCTTTT+AGG | - | chr4_1:79774157-79774176 | None:intergenic | 20.0% |
| !!! | ATATATGGTTTGTATAGATT+AGG | + | chr4_1:79774501-79774520 | Msa0575860:intron | 20.0% |
| ! | AATCTAACCAATACACTATT+GGG | + | chr4_1:79772490-79772509 | Msa0575860:five_prime_UTR | 25.0% |
| !!! | CTCTTTTTTTTTTAGGGTTA+GGG | - | chr4_1:79772610-79772629 | None:intergenic | 25.0% |
| !!! | CCATTCCTCTTTTTTTTTTA+GGG | - | chr4_1:79772616-79772635 | None:intergenic | 25.0% |
| ! | CCTAAAAAAAAAAGAGGAAT+GGG | + | chr4_1:79772614-79772633 | Msa0575860:exon | 25.0% |
| ! | TATTGTTGAAGAAAAGGAAA+AGG | - | chr4_1:79772955-79772974 | None:intergenic | 25.0% |
| ! | GAATGATATTGTTGAAGAAA+AGG | - | chr4_1:79772961-79772980 | None:intergenic | 25.0% |
| ! | AAATTGTTAAGCTTAGAAGA+TGG | + | chr4_1:79773150-79773169 | Msa0575860:CDS | 25.0% |
| ! | CAAAGAAGGTTACTTAAATT+TGG | + | chr4_1:79773304-79773323 | Msa0575860:CDS | 25.0% |
| ! | CAGCAACAAAAAAACATTTA+AGG | - | chr4_1:79773435-79773454 | None:intergenic | 25.0% |
| !! | ATAATTGGTTTCTCTATGTT+TGG | + | chr4_1:79773506-79773525 | Msa0575860:CDS | 25.0% |
| !! | TAATTGGTTTCTCTATGTTT+GGG | + | chr4_1:79773507-79773526 | Msa0575860:CDS | 25.0% |
| !! | TGTATATATTACATTTGGTG+GGG | - | chr4_1:79773545-79773564 | None:intergenic | 25.0% |
| !! | TTACACAATGTACTTTTCAA+AGG | + | chr4_1:79773698-79773717 | Msa0575860:intron | 25.0% |
| ! | AATCCTAATTCCTGAAATAA+GGG | - | chr4_1:79773878-79773897 | None:intergenic | 25.0% |
| ! | AAATCCTAATTCCTGAAATA+AGG | - | chr4_1:79773879-79773898 | None:intergenic | 25.0% |
| ! | AACATGAATTCTTGCTAATA+TGG | + | chr4_1:79773931-79773950 | Msa0575860:intron | 25.0% |
| ! | TTTATGTTTGCAATCCTAAA+AGG | + | chr4_1:79774140-79774159 | Msa0575860:intron | 25.0% |
| ! | ATATGTTTGTTTATGAATGC+AGG | + | chr4_1:79774169-79774188 | Msa0575860:intron | 25.0% |
| ! | GTAGAATTAATTTCATCTTC+AGG | - | chr4_1:79774195-79774214 | None:intergenic | 25.0% |
| ! | ATTTATCAATGTTAAGGACA+CGG | - | chr4_1:79774332-79774351 | None:intergenic | 25.0% |
| ! | TGTCCTTAACATTGATAAAT+GGG | + | chr4_1:79774332-79774351 | Msa0575860:CDS | 25.0% |
| ! | ATATTATGACTCCACTAATT+TGG | - | chr4_1:79774483-79774502 | None:intergenic | 25.0% |
| ! | TAGTGGAGTCATAATATATA+TGG | + | chr4_1:79774486-79774505 | Msa0575860:intron | 25.0% |
| !!! | TAAAGTTTTAGCTTTCCTTA+CGG | + | chr4_1:79774694-79774713 | Msa0575860:intron | 25.0% |
| ! | CATAATATTGATCATTGCAT+AGG | - | chr4_1:79774852-79774871 | None:intergenic | 25.0% |
| !!! | AAAACAATAGTGTTTTGAGA+GGG | - | chr4_1:79774877-79774896 | None:intergenic | 25.0% |
| !!! | AAAAACAATAGTGTTTTGAG+AGG | - | chr4_1:79774878-79774897 | None:intergenic | 25.0% |
| ! | TATACTCGTTCATTTATTGA+AGG | + | chr4_1:79774906-79774925 | Msa0575860:intron | 25.0% |
| ! | AATATTTGACACCAAAATAG+TGG | + | chr4_1:79775397-79775416 | Msa0575860:CDS | 25.0% |
| ! | ATATTTGACACCAAAATAGT+GGG | + | chr4_1:79775398-79775417 | Msa0575860:CDS | 25.0% |
| !!! | AACTCTTTCCTTTTTTTTGT+TGG | + | chr4_1:79775528-79775547 | Msa0575860:three_prime_UTR | 25.0% |
| !!! | AGTTTTCGTTTTAAAAATGG+TGG | + | chr4_1:79775686-79775705 | Msa0575860:three_prime_UTR | 25.0% |
| CAATCTAACCAATACACTAT+TGG | + | chr4_1:79772489-79772508 | Msa0575860:five_prime_UTR | 30.0% | |
| CAACAACACTTATTAACAAG+AGG | - | chr4_1:79772557-79772576 | None:intergenic | 30.0% | |
| ! | CTCTTGTTAATAAGTGTTGT+TGG | + | chr4_1:79772555-79772574 | Msa0575860:five_prime_UTR | 30.0% |
| !!! | CCTCTTTTTTTTTTAGGGTT+AGG | - | chr4_1:79772611-79772630 | None:intergenic | 30.0% |
| CCTAACCCTAAAAAAAAAAG+AGG | + | chr4_1:79772608-79772627 | Msa0575860:five_prime_UTR | 30.0% | |
| CCCTAAAAAAAAAAGAGGAA+TGG | + | chr4_1:79772613-79772632 | Msa0575860:exon | 30.0% | |
| !!! | CCCATTCCTCTTTTTTTTTT+AGG | - | chr4_1:79772617-79772636 | None:intergenic | 30.0% |
| AAAAAAAAAAGAGGAATGGG+TGG | + | chr4_1:79772617-79772636 | Msa0575860:exon | 30.0% | |
| AGTTAACAGAGATAGATGTT+TGG | - | chr4_1:79772814-79772833 | None:intergenic | 30.0% | |
| AAAGGAAAAGGAAAAGGAAA+AGG | - | chr4_1:79772937-79772956 | None:intergenic | 30.0% | |
| TGAAGAAAAGGAAAAGGAAA+AGG | - | chr4_1:79772949-79772968 | None:intergenic | 30.0% | |
| TAATATTATCCTCAGAGAAC+AGG | + | chr4_1:79773118-79773137 | Msa0575860:CDS | 30.0% | |
| GAAATGAGTTAAATACCTTG+AGG | - | chr4_1:79773194-79773213 | None:intergenic | 30.0% | |
| ! | TACTATCAGTTTAAGACCTT+TGG | + | chr4_1:79773366-79773385 | Msa0575860:intron | 30.0% |
| !! | TTTTACTTGTTACCTTTCCA+AGG | + | chr4_1:79773402-79773421 | Msa0575860:intron | 30.0% |
| ! | TTTTATTACTTGCAGGTATC+CGG | - | chr4_1:79773837-79773856 | None:intergenic | 30.0% |
| GATACCTGCAAGTAATAAAA+CGG | + | chr4_1:79773837-79773856 | Msa0575860:intron | 30.0% | |
| AATAAAACGGTCAAGATTGA+AGG | + | chr4_1:79773850-79773869 | Msa0575860:intron | 30.0% | |
| TAGAAAATTCACTGACAACT+CGG | + | chr4_1:79773908-79773927 | Msa0575860:intron | 30.0% | |
| AAAGTACGTAGTATATCTCT+TGG | - | chr4_1:79774249-79774268 | None:intergenic | 30.0% | |
| GTGTCCTTAACATTGATAAA+TGG | + | chr4_1:79774331-79774350 | Msa0575860:CDS | 30.0% | |
| TGACCCATTTATCAATGTTA+AGG | - | chr4_1:79774338-79774357 | None:intergenic | 30.0% | |
| ATACATCTTAAAGTGTATGC+AGG | + | chr4_1:79774369-79774388 | Msa0575860:CDS | 30.0% | |
| ATATCGAATCTTTGATTGTG+AGG | - | chr4_1:79774415-79774434 | None:intergenic | 30.0% | |
| AAATCAGGAACAATTGCTAT+TGG | + | chr4_1:79774597-79774616 | Msa0575860:CDS | 30.0% | |
| CTTGTAATACGTAAAGATTC+AGG | - | chr4_1:79774630-79774649 | None:intergenic | 30.0% | |
| !!! | AAAGTTTTAGCTTTCCTTAC+GGG | + | chr4_1:79774695-79774714 | Msa0575860:intron | 30.0% |
| TGTAAGGATAAAACACAGTT+TGG | - | chr4_1:79774724-79774743 | None:intergenic | 30.0% | |
| ! | AGAATCCATGCTTTTGTAAT+TGG | + | chr4_1:79775048-79775067 | Msa0575860:CDS | 30.0% |
| ! | CTTTTGTAATTGGTGAAGAT+GGG | + | chr4_1:79775058-79775077 | Msa0575860:CDS | 30.0% |
| ! | TTTTGTAATTGGTGAAGATG+GGG | + | chr4_1:79775059-79775078 | Msa0575860:CDS | 30.0% |
| TTAATACAAACTATCACCCA+TGG | - | chr4_1:79775329-79775348 | None:intergenic | 30.0% | |
| CTTGATATACTGATATGATG+TGG | + | chr4_1:79775426-79775445 | Msa0575860:exon | 30.0% | |
| AGCTTGTACCAACAAAAAAA+AGG | - | chr4_1:79775539-79775558 | None:intergenic | 30.0% | |
| AAATGTTAACTAGTGTCTCG+GGG | - | chr4_1:79772444-79772463 | None:intergenic | 35.0% | |
| CAAATGTTAACTAGTGTCTC+GGG | - | chr4_1:79772445-79772464 | None:intergenic | 35.0% | |
| GCAAATGTTAACTAGTGTCT+CGG | - | chr4_1:79772446-79772465 | None:intergenic | 35.0% | |
| GATAGATCCCAATAGTGTAT+TGG | - | chr4_1:79772500-79772519 | None:intergenic | 35.0% | |
| ! | TGTTGTTGGTTGAAGTTGAA+AGG | + | chr4_1:79772569-79772588 | Msa0575860:five_prime_UTR | 35.0% |
| ! | ATTGCTGTTGTTATTGAAGC+TGG | + | chr4_1:79772722-79772741 | Msa0575860:CDS | 35.0% |
| GTGTTTCATCAATCACTCTA+AGG | - | chr4_1:79772787-79772806 | None:intergenic | 35.0% | |
| GGATAGTAAGAACATACGTA+CGG | - | chr4_1:79772906-79772925 | None:intergenic | 35.0% | |
| AAAAGGAAAAGGAAAAGCAG+AGG | - | chr4_1:79772932-79772951 | None:intergenic | 35.0% | |
| AGAAAACAGCATTTACTTCC+TGG | - | chr4_1:79773016-79773035 | None:intergenic | 35.0% | |
| CCTTGAGGAATCTGAAAATT+GGG | - | chr4_1:79773179-79773198 | None:intergenic | 35.0% | |
| ACCTTGAGGAATCTGAAAAT+TGG | - | chr4_1:79773180-79773199 | None:intergenic | 35.0% | |
| CTTAGCGTAGAAAAAGCAAA+TGG | - | chr4_1:79773278-79773297 | None:intergenic | 35.0% | |
| ACGCTAAGTGAAATCAAAGA+AGG | + | chr4_1:79773290-79773309 | Msa0575860:CDS | 35.0% | |
| TTACTTAAATTTGGCCTGCA+AGG | + | chr4_1:79773313-79773332 | Msa0575860:CDS | 35.0% | |
| ACATTTAAGGATCAGAACCT+TGG | - | chr4_1:79773422-79773441 | None:intergenic | 35.0% | |
| ! | TTTTATTCAAACCCACCACA+TGG | - | chr4_1:79773615-79773634 | None:intergenic | 35.0% |
| AAAGGCAAGTTACTTGACAT+AGG | + | chr4_1:79773716-79773735 | Msa0575860:intron | 35.0% | |
| CAAGTTACTTGACATAGGAT+AGG | + | chr4_1:79773721-79773740 | Msa0575860:intron | 35.0% | |
| TTTATTACTTGCAGGTATCC+GGG | - | chr4_1:79773836-79773855 | None:intergenic | 35.0% | |
| !! | TTGACCGTTTTATTACTTGC+AGG | - | chr4_1:79773844-79773863 | None:intergenic | 35.0% |
| ! | ATTGAAGGTTCCCTTATTTC+AGG | + | chr4_1:79773865-79773884 | Msa0575860:intron | 35.0% |
| ! | GTTCCCTTATTTCAGGAATT+AGG | + | chr4_1:79773872-79773891 | Msa0575860:intron | 35.0% |
| AATTCTTGCTAATATGGCCA+TGG | + | chr4_1:79773937-79773956 | Msa0575860:intron | 35.0% | |
| ! | CTAATATGGCCATGGATTTT+TGG | + | chr4_1:79773945-79773964 | Msa0575860:intron | 35.0% |
| TACAATTCTTAGCAGTTAGC+TGG | - | chr4_1:79773992-79774011 | None:intergenic | 35.0% | |
| TTCTACACGTACATTACATC+CGG | + | chr4_1:79774209-79774228 | Msa0575860:CDS | 35.0% | |
| ! | TACTTTTGAACAACCGATAG+AGG | + | chr4_1:79774296-79774315 | Msa0575860:CDS | 35.0% |
| TTAAAGTGTATGCAGGACTA+TGG | + | chr4_1:79774376-79774395 | Msa0575860:CDS | 35.0% | |
| GATTCGATATACCTCAAATG+TGG | + | chr4_1:79774425-79774444 | Msa0575860:CDS | 35.0% | |
| ! | AATTTGATGGTCCACATTTG+AGG | - | chr4_1:79774439-79774458 | None:intergenic | 35.0% |
| TTTGGCGTTCGATAATTTGA+TGG | - | chr4_1:79774452-79774471 | None:intergenic | 35.0% | |
| ATCAAATTATCGAACGCCAA+AGG | + | chr4_1:79774451-79774470 | Msa0575860:CDS | 35.0% | |
| !! | ACTAATTTGGTAACGACCTT+TGG | - | chr4_1:79774470-79774489 | None:intergenic | 35.0% |
| AAAGGTCGTTACCAAATTAG+TGG | + | chr4_1:79774469-79774488 | Msa0575860:intron | 35.0% | |
| TGTTATGTTTGTGTTGAACC+AGG | + | chr4_1:79774550-79774569 | Msa0575860:intron | 35.0% | |
| TATTCGTTCATCATACAACC+TGG | - | chr4_1:79774571-79774590 | None:intergenic | 35.0% | |
| GAACGAATATCGTTGAAATC+AGG | + | chr4_1:79774582-79774601 | Msa0575860:CDS | 35.0% | |
| ! | ACTGTGTTTTATCCTTACAG+AGG | + | chr4_1:79774725-79774744 | Msa0575860:intron | 35.0% |
| AAAAGTTATGCTCTCCTACT+AGG | + | chr4_1:79774986-79775005 | Msa0575860:CDS | 35.0% | |
| CTTGTCATATACTTCCTAGT+AGG | - | chr4_1:79775003-79775022 | None:intergenic | 35.0% | |
| CTTCACCAATTACAAAAGCA+TGG | - | chr4_1:79775056-79775075 | None:intergenic | 35.0% | |
| ! | GCTTTTGTAATTGGTGAAGA+TGG | + | chr4_1:79775057-79775076 | Msa0575860:CDS | 35.0% |
| AAAAAGAGTCTCCTGTCATA+GGG | - | chr4_1:79775201-79775220 | None:intergenic | 35.0% | |
| !! | GACTCTTTTTGATGGTTATC+CGG | + | chr4_1:79775211-79775230 | Msa0575860:CDS | 35.0% |
| !! | ACTCTTTTTGATGGTTATCC+GGG | + | chr4_1:79775212-79775231 | Msa0575860:CDS | 35.0% |
| ! | CTTTTCATATTTGCAATGCC+CGG | - | chr4_1:79775233-79775252 | None:intergenic | 35.0% |
| AGGAAGTTAGACAGATTACT+TGG | + | chr4_1:79775251-79775270 | Msa0575860:CDS | 35.0% | |
| TTACTTGGAGTAACTGAATG+TGG | + | chr4_1:79775266-79775285 | Msa0575860:CDS | 35.0% | |
| ATACCTCCAAAACTGATGTA+TGG | + | chr4_1:79775357-79775376 | Msa0575860:CDS | 35.0% | |
| TACCTCCAAAACTGATGTAT+GGG | + | chr4_1:79775358-79775377 | Msa0575860:CDS | 35.0% | |
| ! | AAACCCTTTTGCAATAGTCT+TGG | + | chr4_1:79775450-79775469 | Msa0575860:three_prime_UTR | 35.0% |
| ! | AACCCTTTTGCAATAGTCTT+GGG | + | chr4_1:79775451-79775470 | Msa0575860:three_prime_UTR | 35.0% |
| ATCCCAAGACTATTGCAAAA+GGG | - | chr4_1:79775456-79775475 | None:intergenic | 35.0% | |
| AATCCCAAGACTATTGCAAA+AGG | - | chr4_1:79775457-79775476 | None:intergenic | 35.0% | |
| !! | TTTTGCAATAGTCTTGGGAT+TGG | + | chr4_1:79775456-79775475 | Msa0575860:three_prime_UTR | 35.0% |
| ! | TCACGCTTTTGATCTATCTT+CGG | - | chr4_1:79775633-79775652 | None:intergenic | 35.0% |
| AAAAAAGAGGAATGGGTGGA+AGG | + | chr4_1:79772621-79772640 | Msa0575860:exon | 40.0% | |
| GTGGAAGGAAAAGGAAAAGT+AGG | + | chr4_1:79772636-79772655 | Msa0575860:CDS | 40.0% | |
| CCGTTCCATTAGTGAACTTT+GGG | - | chr4_1:79772751-79772770 | None:intergenic | 40.0% | |
| CCCAAAGTTCACTAATGGAA+CGG | + | chr4_1:79772748-79772767 | Msa0575860:CDS | 40.0% | |
| TCCGTTCCATTAGTGAACTT+TGG | - | chr4_1:79772752-79772771 | None:intergenic | 40.0% | |
| ATATCACCAGGAGAAACATG+TGG | - | chr4_1:79772863-79772882 | None:intergenic | 40.0% | |
| CGAAGAAGAATGATATCACC+AGG | - | chr4_1:79772875-79772894 | None:intergenic | 40.0% | |
| GAAAAGGAAAAGCAGAGGAT+AGG | - | chr4_1:79772927-79772946 | None:intergenic | 40.0% | |
| ! | CCCAATTTTCAGATTCCTCA+AGG | + | chr4_1:79773176-79773195 | Msa0575860:CDS | 40.0% |
| TTGAGAGTGAATTACCTTGC+AGG | - | chr4_1:79773330-79773349 | None:intergenic | 40.0% | |
| TAAGGATCAGAACCTTGGAA+AGG | - | chr4_1:79773417-79773436 | None:intergenic | 40.0% | |
| ACCTCAAGATACTTCATTGC+TGG | + | chr4_1:79773470-79773489 | Msa0575860:intron | 40.0% | |
| CCTCAAGATACTTCATTGCT+GGG | + | chr4_1:79773471-79773490 | Msa0575860:intron | 40.0% | |
| GGGAGTCTGCAAAAGATAAT+TGG | + | chr4_1:79773491-79773510 | Msa0575860:CDS | 40.0% | |
| TGGTTTCTCTATGTTTGGGA+TGG | + | chr4_1:79773511-79773530 | Msa0575860:CDS | 40.0% | |
| ! | ATCTCTTGTTGATTGAGCAG+TGG | + | chr4_1:79773659-79773678 | Msa0575860:intron | 40.0% |
| GTAACCATCCATCTTGAGAT+TGG | + | chr4_1:79774036-79774055 | Msa0575860:intron | 40.0% | |
| ! | ATATCTCTTGGCAAAGGCAT+AGG | - | chr4_1:79774237-79774256 | None:intergenic | 40.0% |
| CGTAGTATATCTCTTGGCAA+AGG | - | chr4_1:79774243-79774262 | None:intergenic | 40.0% | |
| AATCCTCAAGATTGAGCCAA+CGG | - | chr4_1:79774277-79774296 | None:intergenic | 40.0% | |
| GATCGTGATTAACCTCTGTA+AGG | - | chr4_1:79774740-79774759 | None:intergenic | 40.0% | |
| AGGTTAATCACGATCATGTC+CGG | + | chr4_1:79774745-79774764 | Msa0575860:CDS | 40.0% | |
| !! | CATAGGTTGATGTCAAGTGT+GGG | - | chr4_1:79774835-79774854 | None:intergenic | 40.0% |
| ! | CTAAGTTCACGTGTGTTGTT+CGG | + | chr4_1:79774935-79774954 | Msa0575860:CDS | 40.0% |
| ! | TAAGTTCACGTGTGTTGTTC+GGG | + | chr4_1:79774936-79774955 | Msa0575860:CDS | 40.0% |
| ! | CATAACTTTTCAGCTTGCCA+TGG | - | chr4_1:79774976-79774995 | None:intergenic | 40.0% |
| ! | AAAGCATGGATTCTAGCTGT+TGG | - | chr4_1:79775042-79775061 | None:intergenic | 40.0% |
| TTTGTCGACCATATTCTGTG+TGG | + | chr4_1:79775152-79775171 | Msa0575860:intron | 40.0% | |
| AGAATCAGCCACACAGAATA+TGG | - | chr4_1:79775163-79775182 | None:intergenic | 40.0% | |
| CTGCTATAATACCCTATGAC+AGG | + | chr4_1:79775187-79775206 | Msa0575860:intron | 40.0% | |
| CAAAAAGAGTCTCCTGTCAT+AGG | - | chr4_1:79775202-79775221 | None:intergenic | 40.0% | |
| ! | TGACAGGAGACTCTTTTTGA+TGG | + | chr4_1:79775203-79775222 | Msa0575860:intron | 40.0% |
| ! | CGGGCATTGCAAATATGAAA+AGG | + | chr4_1:79775231-79775250 | Msa0575860:CDS | 40.0% |
| ATACAAACTATCACCCATGG+AGG | - | chr4_1:79775326-79775345 | None:intergenic | 40.0% | |
| ACCTCCAAAACTGATGTATG+GGG | + | chr4_1:79775359-79775378 | Msa0575860:CDS | 40.0% | |
| ! | ACTTCCCCATACATCAGTTT+TGG | - | chr4_1:79775366-79775385 | None:intergenic | 40.0% |
| ! | GTATGGGGAAGTAGAACTTT+TGG | + | chr4_1:79775374-79775393 | Msa0575860:CDS | 40.0% |
| TGACTACGCGTTACTTCGAT+TGG | + | chr4_1:79772661-79772680 | Msa0575860:CDS | 45.0% | |
| GGTCTCCCAAAGTTCACTAA+TGG | + | chr4_1:79772743-79772762 | Msa0575860:CDS | 45.0% | |
| GCAGTTAAGAAGACATGACC+AGG | + | chr4_1:79772995-79773014 | Msa0575860:intron | 45.0% | |
| GATCTTTGTCCTGTTCTCTG+AGG | - | chr4_1:79773130-79773149 | None:intergenic | 45.0% | |
| ! | CCCAGCAATGAAGTATCTTG+AGG | - | chr4_1:79773474-79773493 | None:intergenic | 45.0% |
| AAACCCACCACATGGATTCA+GGG | - | chr4_1:79773607-79773626 | None:intergenic | 45.0% | |
| !!! | TATGGCCATGGATTTTTGGC+AGG | + | chr4_1:79773949-79773968 | Msa0575860:intron | 45.0% |
| AATCGCCTGCCAAAAATCCA+TGG | - | chr4_1:79773957-79773976 | None:intergenic | 45.0% | |
| CACTCCAATCTCAAGATGGA+TGG | - | chr4_1:79774043-79774062 | None:intergenic | 45.0% | |
| GCAACACTCCAATCTCAAGA+TGG | - | chr4_1:79774047-79774066 | None:intergenic | 45.0% | |
| ! | CTACGTACTTTTCCTACCGT+TGG | + | chr4_1:79774258-79774277 | Msa0575860:CDS | 45.0% |
| CGGAGATGATCTTCCTCTAT+CGG | - | chr4_1:79774312-79774331 | None:intergenic | 45.0% | |
| GTGTATGCAGGACTATGGTA+TGG | + | chr4_1:79774381-79774400 | Msa0575860:CDS | 45.0% | |
| ACACAGTTTGGAAACCCGTA+AGG | - | chr4_1:79774712-79774731 | None:intergenic | 45.0% | |
| CATCCATCAAAGTACGATGC+CGG | - | chr4_1:79774767-79774786 | None:intergenic | 45.0% | |
| GGATGTACTCACTCATTCAG+AGG | + | chr4_1:79774782-79774801 | Msa0575860:CDS | 45.0% | |
| !! | GCATAGGTTGATGTCAAGTG+TGG | - | chr4_1:79774836-79774855 | None:intergenic | 45.0% |
| TATGACAAGACTGACCCTAG+AGG | + | chr4_1:79775014-79775033 | Msa0575860:CDS | 45.0% | |
| TCTAGCTGTTGGATCCTCTA+GGG | - | chr4_1:79775031-79775050 | None:intergenic | 45.0% | |
| ! | TTCTAGCTGTTGGATCCTCT+AGG | - | chr4_1:79775032-79775051 | None:intergenic | 45.0% |
| GGAGTAACTGAATGTGGTGA+CGG | + | chr4_1:79775272-79775291 | Msa0575860:CDS | 45.0% | |
| TCACCCATGGAGGATTTCTT+GGG | - | chr4_1:79775316-79775335 | None:intergenic | 45.0% | |
| ATCACCCATGGAGGATTTCT+TGG | - | chr4_1:79775317-79775336 | None:intergenic | 45.0% | |
| !! | TCCCCATACATCAGTTTTGG+AGG | - | chr4_1:79775363-79775382 | None:intergenic | 45.0% |
| CGGACACTCTGACCTTGAAA+TGG | - | chr4_1:79772419-79772438 | None:intergenic | 50.0% | |
| TTAACTAGTGTCTCGGGGCA+CGG | - | chr4_1:79772439-79772458 | None:intergenic | 50.0% | |
| GAGGAATGGGTGGAAGGAAA+AGG | + | chr4_1:79772627-79772646 | Msa0575860:exon | 50.0% | |
| AGCCTTCCACATGTTTCTCC+TGG | + | chr4_1:79772854-79772873 | Msa0575860:CDS | 50.0% | |
| CACCAGGAGAAACATGTGGA+AGG | - | chr4_1:79772859-79772878 | None:intergenic | 50.0% | |
| ACTTCTCCCCTGAATCCATG+TGG | + | chr4_1:79773597-79773616 | Msa0575860:intron | 50.0% | |
| AACCCACCACATGGATTCAG+GGG | - | chr4_1:79773606-79773625 | None:intergenic | 50.0% | |
| CAAACCCACCACATGGATTC+AGG | - | chr4_1:79773608-79773627 | None:intergenic | 50.0% | |
| CTCAAGATTGAGCCAACGGT+AGG | - | chr4_1:79774273-79774292 | None:intergenic | 50.0% | |
| !! | CTACCGTTGGCTCAATCTTG+AGG | + | chr4_1:79774271-79774290 | Msa0575860:CDS | 50.0% |
| TGTCCGGCATCGTACTTTGA+TGG | + | chr4_1:79774761-79774780 | Msa0575860:CDS | 50.0% | |
| !! | TGAATGTGGTGACGGTGTTG+TGG | + | chr4_1:79775280-79775299 | Msa0575860:CDS | 50.0% |
| !! | TGGTGACGGTGTTGTGGTAA+AGG | + | chr4_1:79775286-79775305 | Msa0575860:CDS | 50.0% |
| AGACCCCAAGAAATCCTCCA+TGG | + | chr4_1:79775309-79775328 | Msa0575860:CDS | 50.0% | |
| GACCCCAAGAAATCCTCCAT+GGG | + | chr4_1:79775310-79775329 | Msa0575860:CDS | 50.0% | |
| CACCCATGGAGGATTTCTTG+GGG | - | chr4_1:79775315-79775334 | None:intergenic | 50.0% | |
| !! | TGACACCAAAATAGTGGGCG+AGG | + | chr4_1:79775403-79775422 | Msa0575860:CDS | 50.0% |
| ! | TCAAGCCTCGCCCACTATTT+TGG | - | chr4_1:79775411-79775430 | None:intergenic | 50.0% |
| TCTCCCCTGAATCCATGTGG+TGG | + | chr4_1:79773600-79773619 | Msa0575860:intron | 55.0% | |
| CTCCCCTGAATCCATGTGGT+GGG | + | chr4_1:79773601-79773620 | Msa0575860:intron | 55.0% | |
| TAGGTTCTCCGCAAGTGTCC+CGG | + | chr4_1:79773815-79773834 | Msa0575860:intron | 55.0% | |
| GCGAAGAATCTACAGCACGC+AGG | - | chr4_1:79774095-79774114 | None:intergenic | 55.0% | |
| ! | CTTGGCAAAGGCATAGGCTC+CGG | - | chr4_1:79774231-79774250 | None:intergenic | 55.0% |
| ! | GTTCACGTGTGTTGTTCGGG+TGG | + | chr4_1:79774939-79774958 | Msa0575860:CDS | 55.0% |
| GCAGGTATCCGGGACACTTG+CGG | - | chr4_1:79773826-79773845 | None:intergenic | 60.0% | |
| GGGTGGTAGCAGCAAAGCCA+TGG | + | chr4_1:79774956-79774975 | Msa0575860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79772322 | 79775711 | 79772322 | ID=Msa0575860;Name=Msa0575860 |
| chr4_1 | mRNA | 79772322 | 79775711 | 79772322 | ID=Msa0575860-mRNA-1;Parent=Msa0575860;Name=Msa0575860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=310|1|1|1|0.87|0.88|9|281|471 |
| chr4_1 | exon | 79772322 | 79772904 | 79772322 | ID=Msa0575860-mRNA-1:exon:28480;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79772999 | 79773197 | 79772999 | ID=Msa0575860-mRNA-1:exon:28481;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79773273 | 79773334 | 79773273 | ID=Msa0575860-mRNA-1:exon:28482;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79773478 | 79773566 | 79773478 | ID=Msa0575860-mRNA-1:exon:28483;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79774191 | 79774472 | 79774191 | ID=Msa0575860-mRNA-1:exon:28484;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79774572 | 79774648 | 79774572 | ID=Msa0575860-mRNA-1:exon:28485;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79774745 | 79774803 | 79774745 | ID=Msa0575860-mRNA-1:exon:28486;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79774928 | 79775080 | 79774928 | ID=Msa0575860-mRNA-1:exon:28487;Parent=Msa0575860-mRNA-1 |
| chr4_1 | exon | 79775209 | 79775711 | 79775209 | ID=Msa0575860-mRNA-1:exon:28488;Parent=Msa0575860-mRNA-1 |
| chr4_1 | five_prime_UTR | 79772322 | 79772631 | 79772322 | ID=Msa0575860-mRNA-1:five_prime_utr;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79772632 | 79772904 | 79772632 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79772999 | 79773197 | 79772999 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79773273 | 79773334 | 79773273 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79773478 | 79773566 | 79773478 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79774191 | 79774472 | 79774191 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79774572 | 79774648 | 79774572 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79774745 | 79774803 | 79774745 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79774928 | 79775080 | 79774928 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | CDS | 79775209 | 79775430 | 79775209 | ID=Msa0575860-mRNA-1:cds;Parent=Msa0575860-mRNA-1 |
| chr4_1 | three_prime_UTR | 79775431 | 79775711 | 79775431 | ID=Msa0575860-mRNA-1:three_prime_utr;Parent=Msa0575860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
