Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929740 | XP_003631126.1 | 82.172 | 488 | 42 | 4 | 3 | 463 | 2 | 471 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929740 | sp|Q6NKX5|POT1B_ARATH | 34.792 | 480 | 259 | 10 | 5 | 460 | 2 | 451 | 2.82e-80 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0929740 | -0.829243 | 5.741713e-55 | -8.615850e-47 |
| Msa0039330 | Msa0929740 | 0.821657 | 3.593751e-53 | -8.615850e-47 |
| Msa0044540 | Msa0929740 | -0.806268 | 8.935143e-50 | -8.615850e-47 |
| Msa0054730 | Msa0929740 | -0.813852 | 2.075137e-51 | -8.615850e-47 |
| Msa0106370 | Msa0929740 | -0.846896 | 1.627800e-59 | -8.615850e-47 |
| Msa0607540 | Msa0929740 | 0.812689 | 3.736006e-51 | -8.615850e-47 |
| Msa0610430 | Msa0929740 | 0.807900 | 4.032122e-50 | -8.615850e-47 |
| Msa0621490 | Msa0929740 | 0.805128 | 1.550336e-49 | -8.615850e-47 |
| Msa0661190 | Msa0929740 | -0.840872 | 6.690998e-58 | -8.615850e-47 |
| Msa0669440 | Msa0929740 | 0.802884 | 4.538993e-49 | -8.615850e-47 |
| Msa0716840 | Msa0929740 | 0.805337 | 1.401336e-49 | -8.615850e-47 |
| Msa0773840 | Msa0929740 | 0.805305 | 1.423632e-49 | -8.615850e-47 |
| Msa0796700 | Msa0929740 | 0.804026 | 2.632240e-49 | -8.615850e-47 |
| Msa0221960 | Msa0929740 | -0.832976 | 6.952060e-56 | -8.615850e-47 |
| Msa0229490 | Msa0929740 | -0.818680 | 1.727878e-52 | -8.615850e-47 |
| Msa0373930 | Msa0929740 | 0.809786 | 1.592525e-50 | -8.615850e-47 |
| Msa0245880 | Msa0929740 | 0.806407 | 8.348686e-50 | -8.615850e-47 |
| Msa0260950 | Msa0929740 | -0.816341 | 5.814245e-52 | -8.615850e-47 |
| Msa0265380 | Msa0929740 | 0.825473 | 4.598745e-54 | -8.615850e-47 |
| Msa0303360 | Msa0929740 | 0.817926 | 2.558825e-52 | -8.615850e-47 |
| Msa0540070 | Msa0929740 | 0.800215 | 1.600310e-48 | -8.615850e-47 |
| Msa0564510 | Msa0929740 | 0.801772 | 7.690262e-49 | -8.615850e-47 |
| Msa0575860 | Msa0929740 | 0.814470 | 1.515391e-51 | -8.615850e-47 |
| Msa0585000 | Msa0929740 | -0.817555 | 3.103652e-52 | -8.615850e-47 |
| Msa0929740 | Msa0947660 | 0.802527 | 5.378791e-49 | -8.615850e-47 |
| Msa0929740 | Msa0962190 | -0.811338 | 7.359273e-51 | -8.615850e-47 |
| Msa0929740 | Msa0993290 | 0.810415 | 1.165976e-50 | -8.615850e-47 |
| Msa0929740 | Msa0993600 | 0.801345 | 9.407450e-49 | -8.615850e-47 |
| Msa0929740 | Msa1012830 | 0.802945 | 4.409367e-49 | -8.615850e-47 |
| Msa0929740 | Msa1034360 | 0.800849 | 1.188106e-48 | -8.615850e-47 |
| Msa0929740 | Msa1074060 | 0.804114 | 2.523329e-49 | -8.615850e-47 |
| Msa0929740 | Msa1186950 | -0.802354 | 5.836939e-49 | -8.615850e-47 |
| Msa0929740 | Msa1296880 | 0.836894 | 7.160155e-57 | -8.615850e-47 |
| Msa0929740 | Msa1327050 | 0.800200 | 1.611588e-48 | -8.615850e-47 |
| Msa0929740 | Msa1354050 | 0.911675 | 4.646267e-83 | -8.615850e-47 |
| Msa0929740 | Msa1357530 | 0.823761 | 1.163553e-53 | -8.615850e-47 |
| Msa0929740 | Msa1403340 | 0.800975 | 1.119694e-48 | -8.615850e-47 |
| Msa0929740 | Msa1430680 | 0.804552 | 2.044985e-49 | -8.615850e-47 |
| Msa0929740 | Msa1449250 | -0.814570 | 1.440493e-51 | -8.615850e-47 |
| Msa0929740 | Msa1453780 | -0.812339 | 4.455009e-51 | -8.615850e-47 |
| Msa0929740 | Msa1454910 | -0.820692 | 5.997813e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929740 | MtrunA17_Chr8g0393131 | 82.172 | 488 | 42 | 4 | 3 | 463 | 2 | 471 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0929740 | AT5G06310.1 | 34.792 | 480 | 259 | 10 | 5 | 460 | 2 | 451 | 2.86e-81 | 259 |
| Msa0929740 | AT2G05210.1 | 31.062 | 499 | 265 | 15 | 7 | 461 | 3 | 466 | 7.66e-64 | 214 |
| Msa0929740 | AT2G05210.3 | 31.062 | 499 | 265 | 15 | 7 | 461 | 3 | 466 | 7.66e-64 | 214 |
| Msa0929740 | AT2G05210.2 | 31.062 | 499 | 265 | 15 | 7 | 461 | 3 | 466 | 7.66e-64 | 214 |
| Msa0929740 | AT2G04395.1 | 30.769 | 117 | 78 | 2 | 7 | 120 | 3 | 119 | 5.16e-12 | 63.9 |
Find 110 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTGAGGAATCTGAAAAT+TGG | 0.151989 | 6_2:+78567079 | None:intergenic |
| CAAAGAAGGTTACTTAAATT+TGG | 0.164890 | 6_2:-78566952 | Msa0929740:CDS |
| TCAAACCTCGCCCACTATTT+TGG | 0.188762 | 6_2:+78564849 | None:intergenic |
| GTGTCCTTAACATTGATAAA+TGG | 0.206024 | 6_2:-78565926 | Msa0929740:CDS |
| TGCAAAATATTTATATAATA+AGG | 0.213858 | 6_2:+78567785 | None:intergenic |
| TTATGTAAATTATTTGTATT+TGG | 0.230725 | 6_2:-78564652 | Msa0929740:three_prime_UTR |
| CAATCTAACCAATACACTAT+TGG | 0.260118 | 6_2:-78567764 | Msa0929740:five_prime_UTR |
| ATAATTGGTTTCTCTATGTT+TGG | 0.285155 | 6_2:-78566750 | Msa0929740:CDS |
| CTTGTAATACGTAAAGATTC+AGG | 0.289688 | 6_2:+78565630 | None:intergenic |
| ACTTCCCCATACATCAGTTT+TGG | 0.291105 | 6_2:+78564894 | None:intergenic |
| CACTCTTTAAGATCTTAAAA+TGG | 0.292091 | 6_2:+78567839 | None:intergenic |
| GGGAGTCTGCAAAAGATAAT+TGG | 0.303591 | 6_2:-78566765 | Msa0929740:CDS |
| ATCACCCATGGAGGATTTCT+TGG | 0.307382 | 6_2:+78564943 | None:intergenic |
| CCGTTCCATTAGTGAACTTT+GGG | 0.331435 | 6_2:+78567502 | None:intergenic |
| CTAAGTTCACGTGTGTTGTT+CGG | 0.336291 | 6_2:-78565322 | Msa0929740:CDS |
| AGTTAAAATACAATTATGAT+TGG | 0.347458 | 6_2:-78564414 | Msa0929740:intron |
| GTGTTTCATCAATCACTCTA+AGG | 0.355891 | 6_2:+78567466 | None:intergenic |
| TAAGTTCACGTGTGTTGTTC+GGG | 0.356727 | 6_2:-78565321 | Msa0929740:CDS |
| ACCAACCAACACTTAATAAG+AGG | 0.359658 | 6_2:+78567699 | None:intergenic |
| GTATGGGGAAGTAGAACTTT+TGG | 0.363372 | 6_2:-78564883 | Msa0929740:CDS |
| TAATTGGTTTCTCTATGTTT+GGG | 0.364161 | 6_2:-78566749 | Msa0929740:CDS |
| ACCTCAAGATACTTCATTGC+TGG | 0.366802 | 6_2:-78566786 | Msa0929740:CDS |
| TTGAGAGTGAATTACCTTGC+AGG | 0.383097 | 6_2:+78566929 | None:intergenic |
| TGACCCATTTATCAATGTTA+AGG | 0.390781 | 6_2:+78565922 | None:intergenic |
| AATCTAACCAATACACTATT+GGG | 0.396018 | 6_2:-78567763 | Msa0929740:five_prime_UTR |
| TCACCCATGGAGGATTTCTT+GGG | 0.397379 | 6_2:+78564944 | None:intergenic |
| AATATTTGACACCAAAATAG+TGG | 0.401530 | 6_2:-78564860 | Msa0929740:CDS |
| TCCGTTCCATTAGTGAACTT+TGG | 0.403303 | 6_2:+78567501 | None:intergenic |
| AGAAAACAGCATTTACTTCC+TGG | 0.404273 | 6_2:+78567243 | None:intergenic |
| ATTGCTGTTGTTATTGAAGC+TGG | 0.413842 | 6_2:-78567528 | Msa0929740:CDS |
| CCTTGAGGAATCTGAAAATT+GGG | 0.414035 | 6_2:+78567080 | None:intergenic |
| TTTGGCGTTCGATAATTTGA+TGG | 0.420640 | 6_2:+78565808 | None:intergenic |
| TTAAAGTGTATGCAGGACTA+TGG | 0.426620 | 6_2:-78565881 | Msa0929740:CDS |
| TGTCCTTAACATTGATAAAT+GGG | 0.428681 | 6_2:-78565925 | Msa0929740:CDS |
| GAACGAATATCGTTGAAATC+AGG | 0.431437 | 6_2:-78565675 | Msa0929740:CDS |
| ATACCTCCAAAACTGATGTA+TGG | 0.431794 | 6_2:-78564900 | Msa0929740:CDS |
| AAAAGTTATGCTCTCCTACT+AGG | 0.435695 | 6_2:-78565271 | Msa0929740:CDS |
| GGTCTCCCAAAGTTCACTAA+TGG | 0.439154 | 6_2:-78567507 | Msa0929740:CDS |
| GAGGAATGGGAGGAAGGAAA+AGG | 0.446369 | 6_2:-78567623 | Msa0929740:exon |
| AGGAAGTTAGACAGATTACT+TGG | 0.452007 | 6_2:-78565006 | Msa0929740:CDS |
| TACCTCCAAAACTGATGTAT+GGG | 0.462363 | 6_2:-78564899 | Msa0929740:CDS |
| ATTGTATATATTACATTTGG+TGG | 0.462811 | 6_2:+78566712 | None:intergenic |
| AGCCTTCCACATGTTTCTCC+TGG | 0.470522 | 6_2:-78567396 | Msa0929740:CDS |
| AAAATGTTAACTAGTGCCTC+GGG | 0.471092 | 6_2:+78567809 | None:intergenic |
| TGACTACGCGTTACTTCGAT+TGG | 0.475837 | 6_2:-78567589 | Msa0929740:CDS |
| AGGTTAATCACGATCATGTC+CGG | 0.481568 | 6_2:-78565512 | Msa0929740:CDS |
| AATCCCAAGACTATTGCAAA+AGG | 0.484895 | 6_2:+78564803 | None:intergenic |
| TAATATTATCCTCAGAGAAC+AGG | 0.485182 | 6_2:-78567138 | Msa0929740:CDS |
| CTACCGTTGGCTCAATCTTG+AGG | 0.486330 | 6_2:-78565986 | Msa0929740:CDS |
| AATTTGATGGTCCACATTTG+AGG | 0.487270 | 6_2:+78565821 | None:intergenic |
| CAAAACCTCTTATTAAGTGT+TGG | 0.489283 | 6_2:-78567704 | Msa0929740:five_prime_UTR |
| ACCTCTTATTAAGTGTTGGT+TGG | 0.492306 | 6_2:-78567700 | Msa0929740:five_prime_UTR |
| GATAGATCCCAATAGTGTAT+TGG | 0.492436 | 6_2:+78567756 | None:intergenic |
| TTGTATATATTACATTTGGT+GGG | 0.496921 | 6_2:+78566713 | None:intergenic |
| TGGTTTCTCTATGTTTGGGA+TGG | 0.498067 | 6_2:-78566745 | Msa0929740:CDS |
| TGTCCGGCATCGTACTTTGA+TGG | 0.502519 | 6_2:-78565496 | Msa0929740:CDS |
| GAGGAAGGAAAAGGAAAAGT+AGG | 0.504312 | 6_2:-78567614 | Msa0929740:CDS |
| TTACTTAAATTTGGCCTGCA+AGG | 0.505621 | 6_2:-78566943 | Msa0929740:intron |
| TTCTAGCTGTTGGATCCTCT+AGG | 0.508462 | 6_2:+78565228 | None:intergenic |
| CGGGCATTGCAAATATGAAA+AGG | 0.508721 | 6_2:-78565026 | Msa0929740:CDS |
| CCTCAAGATACTTCATTGCT+GGG | 0.511978 | 6_2:-78566785 | Msa0929740:CDS |
| AGTTAACAGAGATAGATGTT+TGG | 0.517110 | 6_2:+78567439 | None:intergenic |
| AAAGCATGGATTCTAGCTGT+TGG | 0.520950 | 6_2:+78565218 | None:intergenic |
| CTTCACCAATTACAAAAGCA+TGG | 0.524475 | 6_2:+78565204 | None:intergenic |
| TTAACTAGTGCCTCGGGGCA+CGG | 0.526720 | 6_2:+78567815 | None:intergenic |
| TGGTGACGGTATTGTGGTAA+AGG | 0.528847 | 6_2:-78564971 | Msa0929740:CDS |
| AAATCAGGAACAATTGCTGT+TGG | 0.535740 | 6_2:-78565660 | Msa0929740:CDS |
| ATACATCTTAAAGTGTATGC+AGG | 0.538402 | 6_2:-78565888 | Msa0929740:CDS |
| CGAAGAAGAATGATATCACC+AGG | 0.546290 | 6_2:+78567378 | None:intergenic |
| CGGAGATGATCTTCCTCTAT+CGG | 0.547270 | 6_2:+78565948 | None:intergenic |
| AAATTGTTAAGCTTAGAAGA+TGG | 0.548899 | 6_2:-78567106 | Msa0929740:CDS |
| CTTGTCATATACTTCCTAGT+AGG | 0.548949 | 6_2:+78565257 | None:intergenic |
| TGTATATATTACATTTGGTG+GGG | 0.549431 | 6_2:+78566714 | None:intergenic |
| AATTATTTGTATTTGGTCCG+AGG | 0.554293 | 6_2:-78564645 | Msa0929740:three_prime_UTR |
| TCTAGCTGTTGGATCCTCTA+GGG | 0.556090 | 6_2:+78565229 | None:intergenic |
| ATCCCAAGACTATTGCAAAA+GGG | 0.558229 | 6_2:+78564804 | None:intergenic |
| GTGTATGCAGGACTATGGTA+TGG | 0.567558 | 6_2:-78565876 | Msa0929740:CDS |
| GATCTTTGTCCTGTTCTCTG+AGG | 0.570493 | 6_2:+78567129 | None:intergenic |
| ACGCTAAGAGAAATCAAAGA+AGG | 0.571729 | 6_2:-78566966 | Msa0929740:CDS |
| GTTGGTTGGTTGAAGTTGAA+AGG | 0.573884 | 6_2:-78567686 | Msa0929740:five_prime_UTR |
| TGACACCAAAATAGTGGGCG+AGG | 0.575207 | 6_2:-78564854 | Msa0929740:CDS |
| CCCAAAGTTCACTAATGGAA+CGG | 0.579548 | 6_2:-78567502 | Msa0929740:CDS |
| AGACCCCAAGAAATCCTCCA+TGG | 0.582960 | 6_2:-78564948 | Msa0929740:CDS |
| CACCCATGGAGGATTTCTTG+GGG | 0.592410 | 6_2:+78564945 | None:intergenic |
| AATCCTCAAGATTGAGCCAA+CGG | 0.594224 | 6_2:+78565983 | None:intergenic |
| GATTCGATATACCTCAAATG+TGG | 0.602882 | 6_2:-78565832 | Msa0929740:CDS |
| GCAGGTAAGAAGACATGACC+AGG | 0.604151 | 6_2:-78567261 | Msa0929740:intron |
| ATCAAATTATCGAACGCCAA+AGG | 0.604361 | 6_2:-78565806 | Msa0929740:intron |
| CATCCATCAAAGTACGATGC+CGG | 0.606271 | 6_2:+78565493 | None:intergenic |
| GTTCACGTGTGTTGTTCGGG+TGG | 0.607327 | 6_2:-78565318 | Msa0929740:CDS |
| ATATTTGACACCAAAATAGT+GGG | 0.607462 | 6_2:-78564859 | Msa0929740:CDS |
| ATATCGAATCTTTGATTGTG+AGG | 0.610806 | 6_2:+78565845 | None:intergenic |
| TTAATACAAACTATCACCCA+TGG | 0.612169 | 6_2:+78564931 | None:intergenic |
| GGGTGGTAGCAGCAAAGCCA+TGG | 0.613819 | 6_2:-78565301 | Msa0929740:CDS |
| CCCAGCAATGAAGTATCTTG+AGG | 0.617605 | 6_2:+78566785 | None:intergenic |
| TGAATGTGGTGACGGTATTG+TGG | 0.621459 | 6_2:-78564977 | Msa0929740:CDS |
| GACCCCAAGAAATCCTCCAT+GGG | 0.630467 | 6_2:-78564947 | Msa0929740:CDS |
| ACCTCCAAAACTGATGTATG+GGG | 0.632813 | 6_2:-78564898 | Msa0929740:CDS |
| GGATGTACTCACTCATTCAG+AGG | 0.636868 | 6_2:-78565475 | Msa0929740:intron |
| CACCAGGAGAAACATGTGGA+AGG | 0.643881 | 6_2:+78567394 | None:intergenic |
| TTTGATATACTGATATGATG+TGG | 0.644054 | 6_2:-78564831 | Msa0929740:exon |
| CTCAAGATTGAGCCAACGGT+AGG | 0.647732 | 6_2:+78565987 | None:intergenic |
| ATTTATCAATGTTAAGGACA+CGG | 0.661104 | 6_2:+78565928 | None:intergenic |
| ATATCACCAGGAGAAACATG+TGG | 0.669575 | 6_2:+78567390 | None:intergenic |
| TTACTTGGAGTAACTGAATG+TGG | 0.687106 | 6_2:-78564991 | Msa0929740:CDS |
| TAAAGAGTGTCCGTGCCCCG+AGG | 0.698892 | 6_2:-78567825 | Msa0929740:five_prime_UTR |
| GGAGTAACTGAATGTGGTGA+CGG | 0.706321 | 6_2:-78564985 | Msa0929740:CDS |
| ATACAAACTATCACCCATGG+AGG | 0.711847 | 6_2:+78564934 | None:intergenic |
| AAATGTTAACTAGTGCCTCG+GGG | 0.724142 | 6_2:+78567810 | None:intergenic |
| TATGACAAGACTGACCCTAG+AGG | 0.735776 | 6_2:-78565243 | Msa0929740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCAAAATATTTATATAATA+AGG | + | chr6_2:78564533-78564552 | None:intergenic | 10.0% |
| !! | TTGAAAAATAATAAATGTTT+AGG | - | chr6_2:78565855-78565874 | Msa0929740:CDS | 10.0% |
| !! | TTATGTAAATTATTTGTATT+TGG | - | chr6_2:78567663-78567682 | Msa0929740:five_prime_UTR | 10.0% |
| !!! | GTTTTTTTCAAATTTTTTAA+TGG | + | chr6_2:78567800-78567819 | None:intergenic | 10.0% |
| !!! | TGAAATAATTGACTTTTTTA+TGG | + | chr6_2:78564416-78564435 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTAGGGTTA+GGG | + | chr6_2:78564670-78564689 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGGTT+AGG | + | chr6_2:78564671-78564690 | None:intergenic | 15.0% |
| !!! | CCTCTTTTTTTTTTTTTTTA+GGG | + | chr6_2:78564676-78564695 | None:intergenic | 15.0% |
| !!! | TCCTCTTTTTTTTTTTTTTT+AGG | + | chr6_2:78564677-78564696 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAAGAGGAA+TGG | - | chr6_2:78564678-78564697 | Msa0929740:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAAAAGAGGAAT+GGG | - | chr6_2:78564679-78564698 | Msa0929740:three_prime_UTR | 15.0% |
| !! | ACTTCATTTCTTAATATTTA+AGG | - | chr6_2:78565290-78565309 | Msa0929740:CDS | 15.0% |
| !!! | AAACATATCAAATTTCTTTT+AGG | + | chr6_2:78566216-78566235 | None:intergenic | 15.0% |
| !! | TAACAAAAATATAATGACAT+TGG | + | chr6_2:78566593-78566612 | None:intergenic | 15.0% |
| !!! | AGAGAACAATTTTAAAAAAA+TGG | + | chr6_2:78567730-78567749 | None:intergenic | 15.0% |
| !! | AGTTAAAATACAATTATGAT+TGG | - | chr6_2:78567901-78567920 | Msa0929740:five_prime_UTR | 15.0% |
| !!! | ATTAGTTTTCGTTTTAAAAA+TGG | - | chr6_2:78567924-78567943 | Msa0929740:five_prime_UTR | 15.0% |
| !! | CCCTAAAAAAAAAAAAAAAG+AGG | - | chr6_2:78564673-78564692 | Msa0929740:three_prime_UTR | 20.0% |
| !!! | TCTACTTTTGCATTATATAA+AGG | - | chr6_2:78565106-78565125 | Msa0929740:intron | 20.0% |
| !!! | CTACTTTTGCATTATATAAA+GGG | - | chr6_2:78565107-78565126 | Msa0929740:intron | 20.0% |
| !!! | TAGTTGAAAAAAGTTGATAA+GGG | + | chr6_2:78565159-78565178 | None:intergenic | 20.0% |
| !!! | TTAGTTGAAAAAAGTTGATA+AGG | + | chr6_2:78565160-78565179 | None:intergenic | 20.0% |
| !! | AAAAAATCGTATTTATCCAA+AGG | + | chr6_2:78565444-78565463 | None:intergenic | 20.0% |
| !! | TTGTATATATTACATTTGGT+GGG | + | chr6_2:78565605-78565624 | None:intergenic | 20.0% |
| !! | ATTGTATATATTACATTTGG+TGG | + | chr6_2:78565606-78565625 | None:intergenic | 20.0% |
| !! | CACATTGTATATATTACATT+TGG | + | chr6_2:78565609-78565628 | None:intergenic | 20.0% |
| !!! | ATTGTATTGTAATTTGTTGA+TGG | - | chr6_2:78565693-78565712 | Msa0929740:intron | 20.0% |
| !! | AATTGTATATGGTATCTTAA+CGG | - | chr6_2:78566064-78566083 | Msa0929740:intron | 20.0% |
| !!! | ATATATGGTTTGTATAGATT+AGG | - | chr6_2:78566559-78566578 | Msa0929740:intron | 20.0% |
| !!! | AAACTCTTTCCTTTTTTTAT+TGG | - | chr6_2:78567585-78567604 | Msa0929740:CDS | 20.0% |
| !!! | AAAAAAATGGACTTTAGAAA+AGG | + | chr6_2:78567717-78567736 | None:intergenic | 20.0% |
| !!! | ATTTTAACTGTTTAACTGTT+TGG | + | chr6_2:78567890-78567909 | None:intergenic | 20.0% |
| !!! | CACTCTTTAAGATCTTAAAA+TGG | + | chr6_2:78564479-78564498 | None:intergenic | 25.0% |
| ! | AATCTAACCAATACACTATT+GGG | - | chr6_2:78564552-78564571 | Msa0929740:intron | 25.0% |
| !! | TCTATCTCATTTTGAATACA+AGG | - | chr6_2:78564580-78564599 | Msa0929740:intron | 25.0% |
| !! | CTATCTCATTTTGAATACAA+GGG | - | chr6_2:78564581-78564600 | Msa0929740:intron | 25.0% |
| ! | TATTGTTGAAGAAAAGGAAA+AGG | + | chr6_2:78565014-78565033 | None:intergenic | 25.0% |
| ! | GAATGATATTGTTGAAGAAA+AGG | + | chr6_2:78565020-78565039 | None:intergenic | 25.0% |
| !! | ATTCTTTTTCTCTATTTTGC+AGG | - | chr6_2:78565036-78565055 | Msa0929740:CDS | 25.0% |
| ! | AAATTGTTAAGCTTAGAAGA+TGG | - | chr6_2:78565209-78565228 | Msa0929740:CDS | 25.0% |
| ! | CAAAGAAGGTTACTTAAATT+TGG | - | chr6_2:78565363-78565382 | Msa0929740:intron | 25.0% |
| ! | CAGCAACAAAAAAACATTTA+AGG | + | chr6_2:78565494-78565513 | None:intergenic | 25.0% |
| !! | ATAATTGGTTTCTCTATGTT+TGG | - | chr6_2:78565565-78565584 | Msa0929740:intron | 25.0% |
| !! | TAATTGGTTTCTCTATGTTT+GGG | - | chr6_2:78565566-78565585 | Msa0929740:intron | 25.0% |
| !! | TGTATATATTACATTTGGTG+GGG | + | chr6_2:78565604-78565623 | None:intergenic | 25.0% |
| !! | TTACACAATGTACTTTTCAA+AGG | - | chr6_2:78565757-78565776 | Msa0929740:intron | 25.0% |
| ! | AATCCTAATTCCTGAAATAA+GGG | + | chr6_2:78565937-78565956 | None:intergenic | 25.0% |
| ! | AAATCCTAATTCCTGAAATA+AGG | + | chr6_2:78565938-78565957 | None:intergenic | 25.0% |
| ! | AACATGAATTCTTGCTAATA+TGG | - | chr6_2:78565990-78566009 | Msa0929740:CDS | 25.0% |
| ! | TAACTGCTAAGAATTGTATA+TGG | - | chr6_2:78566053-78566072 | Msa0929740:intron | 25.0% |
| ! | ATATGTTTGTTTATGAATGC+AGG | - | chr6_2:78566228-78566247 | Msa0929740:intron | 25.0% |
| ! | GTAGAATTAATTTCATCTTC+AGG | + | chr6_2:78566254-78566273 | None:intergenic | 25.0% |
| ! | AAAAGTCATAGTATATCTCT+TGG | + | chr6_2:78566308-78566327 | None:intergenic | 25.0% |
| ! | ATTTATCAATGTTAAGGACA+CGG | + | chr6_2:78566390-78566409 | None:intergenic | 25.0% |
| ! | TGTCCTTAACATTGATAAAT+GGG | - | chr6_2:78566390-78566409 | Msa0929740:intron | 25.0% |
| ! | ATATTATGACTCCACTAATT+TGG | + | chr6_2:78566541-78566560 | None:intergenic | 25.0% |
| ! | TAGTGGAGTCATAATATATA+TGG | - | chr6_2:78566544-78566563 | Msa0929740:intron | 25.0% |
| !!! | TAAAGTTTTAGCTTTCCTTA+CGG | - | chr6_2:78566752-78566771 | Msa0929740:CDS | 25.0% |
| ! | CATAATATTGATCATTGCAT+AGG | + | chr6_2:78566910-78566929 | None:intergenic | 25.0% |
| !!! | AAAACAATAGTGTTTTGAGA+GGG | + | chr6_2:78566935-78566954 | None:intergenic | 25.0% |
| !!! | AAAAACAATAGTGTTTTGAG+AGG | + | chr6_2:78566936-78566955 | None:intergenic | 25.0% |
| ! | TATACTCGTTCATTTATTGA+AGG | - | chr6_2:78566964-78566983 | Msa0929740:CDS | 25.0% |
| ! | AATATTTGACACCAAAATAG+TGG | - | chr6_2:78567455-78567474 | Msa0929740:CDS | 25.0% |
| ! | ATATTTGACACCAAAATAGT+GGG | - | chr6_2:78567456-78567475 | Msa0929740:CDS | 25.0% |
| ! | TTTGATATACTGATATGATG+TGG | - | chr6_2:78567484-78567503 | Msa0929740:CDS | 25.0% |
| !! | TAGCTTGTACCAATAAAAAA+AGG | + | chr6_2:78567597-78567616 | None:intergenic | 25.0% |
| !! | TCTTGTAAATCCTTCATTTT+TGG | - | chr6_2:78567747-78567766 | Msa0929740:five_prime_UTR | 25.0% |
| !!! | CAAATTTTTTAATGGAAGAG+AGG | + | chr6_2:78567792-78567811 | None:intergenic | 25.0% |
| !!! | AGTTTTCGTTTTAAAAATGG+TGG | - | chr6_2:78567927-78567946 | Msa0929740:five_prime_UTR | 25.0% |
| AAAAATGTTAACTAGTGCCT+CGG | + | chr6_2:78564510-78564529 | None:intergenic | 30.0% | |
| CAATCTAACCAATACACTAT+TGG | - | chr6_2:78564551-78564570 | Msa0929740:intron | 30.0% | |
| CAAAACCTCTTATTAAGTGT+TGG | - | chr6_2:78564611-78564630 | Msa0929740:intron | 30.0% | |
| AAAAAAAAAAGAGGAATGGG+AGG | - | chr6_2:78564682-78564701 | Msa0929740:three_prime_UTR | 30.0% | |
| AGTTAACAGAGATAGATGTT+TGG | + | chr6_2:78564879-78564898 | None:intergenic | 30.0% | |
| TGAAGAAAAGGAAAAGGAAA+AGG | + | chr6_2:78565008-78565027 | None:intergenic | 30.0% | |
| TAATATTATCCTCAGAGAAC+AGG | - | chr6_2:78565177-78565196 | Msa0929740:intron | 30.0% | |
| GAAATGAGTTAAATACCTTG+AGG | + | chr6_2:78565253-78565272 | None:intergenic | 30.0% | |
| CTTAGCGTAGAAAAAGTAAA+TGG | + | chr6_2:78565337-78565356 | None:intergenic | 30.0% | |
| ! | TACTATCAGTTTAAGACCTT+TGG | - | chr6_2:78565425-78565444 | Msa0929740:intron | 30.0% |
| !! | TTTTACTTGTTACCTTTCCA+AGG | - | chr6_2:78565461-78565480 | Msa0929740:intron | 30.0% |
| ! | TTTTATTACTTGCAGGTATC+CGG | + | chr6_2:78565896-78565915 | None:intergenic | 30.0% |
| GATACCTGCAAGTAATAAAA+CGG | - | chr6_2:78565896-78565915 | Msa0929740:CDS | 30.0% | |
| AATAAAACGGTCAAGATTGA+AGG | - | chr6_2:78565909-78565928 | Msa0929740:CDS | 30.0% | |
| TAGAAAATTCACTGACAACT+CGG | - | chr6_2:78565967-78565986 | Msa0929740:CDS | 30.0% | |
| GTGTCCTTAACATTGATAAA+TGG | - | chr6_2:78566389-78566408 | Msa0929740:intron | 30.0% | |
| TGACCCATTTATCAATGTTA+AGG | + | chr6_2:78566396-78566415 | None:intergenic | 30.0% | |
| ATACATCTTAAAGTGTATGC+AGG | - | chr6_2:78566427-78566446 | Msa0929740:intron | 30.0% | |
| ATATCGAATCTTTGATTGTG+AGG | + | chr6_2:78566473-78566492 | None:intergenic | 30.0% | |
| CTTGTAATACGTAAAGATTC+AGG | + | chr6_2:78566688-78566707 | None:intergenic | 30.0% | |
| !!! | AAAGTTTTAGCTTTCCTTAC+GGG | - | chr6_2:78566753-78566772 | Msa0929740:CDS | 30.0% |
| TGTAAGGATAAAACACAGTT+TGG | + | chr6_2:78566782-78566801 | None:intergenic | 30.0% | |
| ! | AGAATCCATGCTTTTGTAAT+TGG | - | chr6_2:78567106-78567125 | Msa0929740:CDS | 30.0% |
| ! | CTTTTGTAATTGGTGAAGAT+GGG | - | chr6_2:78567116-78567135 | Msa0929740:CDS | 30.0% |
| ! | TTTTGTAATTGGTGAAGATG+GGG | - | chr6_2:78567117-78567136 | Msa0929740:CDS | 30.0% |
| TTAATACAAACTATCACCCA+TGG | + | chr6_2:78567387-78567406 | None:intergenic | 30.0% | |
| AATTATTTGTATTTGGTCCG+AGG | - | chr6_2:78567670-78567689 | Msa0929740:five_prime_UTR | 30.0% | |
| !! | TGTAAATCCTTCATTTTTGG+TGG | - | chr6_2:78567750-78567769 | Msa0929740:five_prime_UTR | 30.0% |
| AAAATGTTAACTAGTGCCTC+GGG | + | chr6_2:78564509-78564528 | None:intergenic | 35.0% | |
| GATAGATCCCAATAGTGTAT+TGG | + | chr6_2:78564562-78564581 | None:intergenic | 35.0% | |
| !! | ACCTCTTATTAAGTGTTGGT+TGG | - | chr6_2:78564615-78564634 | Msa0929740:three_prime_UTR | 35.0% |
| ACCAACCAACACTTAATAAG+AGG | + | chr6_2:78564619-78564638 | None:intergenic | 35.0% | |
| ! | ATTGCTGTTGTTATTGAAGC+TGG | - | chr6_2:78564787-78564806 | Msa0929740:three_prime_UTR | 35.0% |
| GTGTTTCATCAATCACTCTA+AGG | + | chr6_2:78564852-78564871 | None:intergenic | 35.0% | |
| GGATAGTAAGAACATACGTA+CGG | + | chr6_2:78564971-78564990 | None:intergenic | 35.0% | |
| AAAAGGAAAAGGAAAAGCAG+AGG | + | chr6_2:78564997-78565016 | None:intergenic | 35.0% | |
| AGAAAACAGCATTTACTTCC+TGG | + | chr6_2:78565075-78565094 | None:intergenic | 35.0% | |
| CCTTGAGGAATCTGAAAATT+GGG | + | chr6_2:78565238-78565257 | None:intergenic | 35.0% | |
| ACCTTGAGGAATCTGAAAAT+TGG | + | chr6_2:78565239-78565258 | None:intergenic | 35.0% | |
| ACGCTAAGAGAAATCAAAGA+AGG | - | chr6_2:78565349-78565368 | Msa0929740:intron | 35.0% | |
| TTACTTAAATTTGGCCTGCA+AGG | - | chr6_2:78565372-78565391 | Msa0929740:intron | 35.0% | |
| ACATTTAAGGATCAGAACCT+TGG | + | chr6_2:78565481-78565500 | None:intergenic | 35.0% | |
| ! | TTTTATTCAAACCCACCACA+TGG | + | chr6_2:78565674-78565693 | None:intergenic | 35.0% |
| AAAGGCAAGTTACTTGACAT+AGG | - | chr6_2:78565775-78565794 | Msa0929740:intron | 35.0% | |
| CAAGTTACTTGACATAGGAT+AGG | - | chr6_2:78565780-78565799 | Msa0929740:intron | 35.0% | |
| TTTATTACTTGCAGGTATCC+GGG | + | chr6_2:78565895-78565914 | None:intergenic | 35.0% | |
| !! | TTGACCGTTTTATTACTTGC+AGG | + | chr6_2:78565903-78565922 | None:intergenic | 35.0% |
| ! | ATTGAAGGTTCCCTTATTTC+AGG | - | chr6_2:78565924-78565943 | Msa0929740:CDS | 35.0% |
| ! | GTTCCCTTATTTCAGGAATT+AGG | - | chr6_2:78565931-78565950 | Msa0929740:CDS | 35.0% |
| AATTCTTGCTAATATGGCCA+TGG | - | chr6_2:78565996-78566015 | Msa0929740:CDS | 35.0% | |
| ! | CTAATATGGCCATGGATTTT+TGG | - | chr6_2:78566004-78566023 | Msa0929740:CDS | 35.0% |
| TACAATTCTTAGCAGTTAGC+TGG | + | chr6_2:78566051-78566070 | None:intergenic | 35.0% | |
| TTCTACACGTACATTACATC+CGG | - | chr6_2:78566268-78566287 | Msa0929740:intron | 35.0% | |
| CATAGTATATCTCTTGGCAA+AGG | + | chr6_2:78566302-78566321 | None:intergenic | 35.0% | |
| ! | TACTTTTGAACAACCGATAG+AGG | - | chr6_2:78566354-78566373 | Msa0929740:intron | 35.0% |
| TTAAAGTGTATGCAGGACTA+TGG | - | chr6_2:78566434-78566453 | Msa0929740:intron | 35.0% | |
| GATTCGATATACCTCAAATG+TGG | - | chr6_2:78566483-78566502 | Msa0929740:intron | 35.0% | |
| ! | AATTTGATGGTCCACATTTG+AGG | + | chr6_2:78566497-78566516 | None:intergenic | 35.0% |
| TTTGGCGTTCGATAATTTGA+TGG | + | chr6_2:78566510-78566529 | None:intergenic | 35.0% | |
| ATCAAATTATCGAACGCCAA+AGG | - | chr6_2:78566509-78566528 | Msa0929740:intron | 35.0% | |
| ! | ACTAATTTGGTAACCACCTT+TGG | + | chr6_2:78566528-78566547 | None:intergenic | 35.0% |
| AAAGGTGGTTACCAAATTAG+TGG | - | chr6_2:78566527-78566546 | Msa0929740:intron | 35.0% | |
| TGTTATGTTTGTGTTGAACC+AGG | - | chr6_2:78566608-78566627 | Msa0929740:intron | 35.0% | |
| TATTCGTTCATCATACAACC+TGG | + | chr6_2:78566629-78566648 | None:intergenic | 35.0% | |
| GAACGAATATCGTTGAAATC+AGG | - | chr6_2:78566640-78566659 | Msa0929740:intron | 35.0% | |
| AAATCAGGAACAATTGCTGT+TGG | - | chr6_2:78566655-78566674 | Msa0929740:intron | 35.0% | |
| ! | ACTGTGTTTTATCCTTACAG+AGG | - | chr6_2:78566783-78566802 | Msa0929740:CDS | 35.0% |
| AAAAGTTATGCTCTCCTACT+AGG | - | chr6_2:78567044-78567063 | Msa0929740:intron | 35.0% | |
| CTTGTCATATACTTCCTAGT+AGG | + | chr6_2:78567061-78567080 | None:intergenic | 35.0% | |
| CTTCACCAATTACAAAAGCA+TGG | + | chr6_2:78567114-78567133 | None:intergenic | 35.0% | |
| ! | GCTTTTGTAATTGGTGAAGA+TGG | - | chr6_2:78567115-78567134 | Msa0929740:CDS | 35.0% |
| AAAAAGAGTCTCCTGTCATA+GGG | + | chr6_2:78567259-78567278 | None:intergenic | 35.0% | |
| ! | TTTTCATATTTGCAATGCCC+GGG | + | chr6_2:78567290-78567309 | None:intergenic | 35.0% |
| ! | CTTTTCATATTTGCAATGCC+CGG | + | chr6_2:78567291-78567310 | None:intergenic | 35.0% |
| AGGAAGTTAGACAGATTACT+TGG | - | chr6_2:78567309-78567328 | Msa0929740:intron | 35.0% | |
| TTACTTGGAGTAACTGAATG+TGG | - | chr6_2:78567324-78567343 | Msa0929740:intron | 35.0% | |
| ATACCTCCAAAACTGATGTA+TGG | - | chr6_2:78567415-78567434 | Msa0929740:CDS | 35.0% | |
| TACCTCCAAAACTGATGTAT+GGG | - | chr6_2:78567416-78567435 | Msa0929740:CDS | 35.0% | |
| ! | AAACCCTTTTGCAATAGTCT+TGG | - | chr6_2:78567508-78567527 | Msa0929740:CDS | 35.0% |
| ! | AACCCTTTTGCAATAGTCTT+GGG | - | chr6_2:78567509-78567528 | Msa0929740:CDS | 35.0% |
| ATCCCAAGACTATTGCAAAA+GGG | + | chr6_2:78567514-78567533 | None:intergenic | 35.0% | |
| AATCCCAAGACTATTGCAAA+AGG | + | chr6_2:78567515-78567534 | None:intergenic | 35.0% | |
| !! | TTTTGCAATAGTCTTGGGAT+TGG | - | chr6_2:78567514-78567533 | Msa0929740:CDS | 35.0% |
| CAAAACTCCACCAAAAATGA+AGG | + | chr6_2:78567760-78567779 | None:intergenic | 35.0% | |
| ! | AATTTCTCTCCTCGTTGTTT+TGG | - | chr6_2:78567836-78567855 | Msa0929740:five_prime_UTR | 35.0% |
| !! | ATTTCTCTCCTCGTTGTTTT+GGG | - | chr6_2:78567837-78567856 | Msa0929740:five_prime_UTR | 35.0% |
| ATAAACAACCCAAAACAACG+AGG | + | chr6_2:78567848-78567867 | None:intergenic | 35.0% | |
| AAATGTTAACTAGTGCCTCG+GGG | + | chr6_2:78564508-78564527 | None:intergenic | 40.0% | |
| ! | GTTGGTTGGTTGAAGTTGAA+AGG | - | chr6_2:78564629-78564648 | Msa0929740:three_prime_UTR | 40.0% |
| AAAAAAGAGGAATGGGAGGA+AGG | - | chr6_2:78564686-78564705 | Msa0929740:three_prime_UTR | 40.0% | |
| GAGGAAGGAAAAGGAAAAGT+AGG | - | chr6_2:78564701-78564720 | Msa0929740:three_prime_UTR | 40.0% | |
| CCGTTCCATTAGTGAACTTT+GGG | + | chr6_2:78564816-78564835 | None:intergenic | 40.0% | |
| CCCAAAGTTCACTAATGGAA+CGG | - | chr6_2:78564813-78564832 | Msa0929740:three_prime_UTR | 40.0% | |
| TCCGTTCCATTAGTGAACTT+TGG | + | chr6_2:78564817-78564836 | None:intergenic | 40.0% | |
| ATATCACCAGGAGAAACATG+TGG | + | chr6_2:78564928-78564947 | None:intergenic | 40.0% | |
| CGAAGAAGAATGATATCACC+AGG | + | chr6_2:78564940-78564959 | None:intergenic | 40.0% | |
| GAAAAGGAAAAGCAGAGGAT+AGG | + | chr6_2:78564992-78565011 | None:intergenic | 40.0% | |
| ! | CCCAATTTTCAGATTCCTCA+AGG | - | chr6_2:78565235-78565254 | Msa0929740:CDS | 40.0% |
| TTGAGAGTGAATTACCTTGC+AGG | + | chr6_2:78565389-78565408 | None:intergenic | 40.0% | |
| TAAGGATCAGAACCTTGGAA+AGG | + | chr6_2:78565476-78565495 | None:intergenic | 40.0% | |
| ACCTCAAGATACTTCATTGC+TGG | - | chr6_2:78565529-78565548 | Msa0929740:intron | 40.0% | |
| CCTCAAGATACTTCATTGCT+GGG | - | chr6_2:78565530-78565549 | Msa0929740:intron | 40.0% | |
| GGGAGTCTGCAAAAGATAAT+TGG | - | chr6_2:78565550-78565569 | Msa0929740:intron | 40.0% | |
| TGGTTTCTCTATGTTTGGGA+TGG | - | chr6_2:78565570-78565589 | Msa0929740:intron | 40.0% | |
| ! | ATCTCTTGTTGATTGAGCAG+TGG | - | chr6_2:78565718-78565737 | Msa0929740:intron | 40.0% |
| GTAACCATCCATCTTGAGAT+TGG | - | chr6_2:78566095-78566114 | Msa0929740:intron | 40.0% | |
| ! | ATATCTCTTGGCAAAGGCAT+AGG | + | chr6_2:78566296-78566315 | None:intergenic | 40.0% |
| ! | ACTATGACTTTTCCTACCGT+TGG | - | chr6_2:78566316-78566335 | Msa0929740:intron | 40.0% |
| AATCCTCAAGATTGAGCCAA+CGG | + | chr6_2:78566335-78566354 | None:intergenic | 40.0% | |
| AAATTATCGAACGCCAAAGG+TGG | - | chr6_2:78566512-78566531 | Msa0929740:intron | 40.0% | |
| GATCGTGATTAACCTCTGTA+AGG | + | chr6_2:78566798-78566817 | None:intergenic | 40.0% | |
| AGGTTAATCACGATCATGTC+CGG | - | chr6_2:78566803-78566822 | Msa0929740:CDS | 40.0% | |
| !! | CATAGGTTGATGTCAAGTGT+GGG | + | chr6_2:78566893-78566912 | None:intergenic | 40.0% |
| ! | CTAAGTTCACGTGTGTTGTT+CGG | - | chr6_2:78566993-78567012 | Msa0929740:intron | 40.0% |
| ! | TAAGTTCACGTGTGTTGTTC+GGG | - | chr6_2:78566994-78567013 | Msa0929740:intron | 40.0% |
| ! | CATAACTTTTCAGCTTGCCA+TGG | + | chr6_2:78567034-78567053 | None:intergenic | 40.0% |
| ! | AAAGCATGGATTCTAGCTGT+TGG | + | chr6_2:78567100-78567119 | None:intergenic | 40.0% |
| TTTGTCGACCATATTCTGTG+TGG | - | chr6_2:78567210-78567229 | Msa0929740:CDS | 40.0% | |
| AGAATCAGCCACACAGAATA+TGG | + | chr6_2:78567221-78567240 | None:intergenic | 40.0% | |
| CTGCTATAATACCCTATGAC+AGG | - | chr6_2:78567245-78567264 | Msa0929740:CDS | 40.0% | |
| CAAAAAGAGTCTCCTGTCAT+AGG | + | chr6_2:78567260-78567279 | None:intergenic | 40.0% | |
| ! | TGACAGGAGACTCTTTTTGA+TGG | - | chr6_2:78567261-78567280 | Msa0929740:intron | 40.0% |
| !! | GACTCTTTTTGATGGTTACC+CGG | - | chr6_2:78567269-78567288 | Msa0929740:intron | 40.0% |
| !! | ACTCTTTTTGATGGTTACCC+GGG | - | chr6_2:78567270-78567289 | Msa0929740:intron | 40.0% |
| ! | CGGGCATTGCAAATATGAAA+AGG | - | chr6_2:78567289-78567308 | Msa0929740:intron | 40.0% |
| ATACAAACTATCACCCATGG+AGG | + | chr6_2:78567384-78567403 | None:intergenic | 40.0% | |
| ACCTCCAAAACTGATGTATG+GGG | - | chr6_2:78567417-78567436 | Msa0929740:CDS | 40.0% | |
| ! | ACTTCCCCATACATCAGTTT+TGG | + | chr6_2:78567424-78567443 | None:intergenic | 40.0% |
| ! | GTATGGGGAAGTAGAACTTT+TGG | - | chr6_2:78567432-78567451 | Msa0929740:CDS | 40.0% |
| ! | TCACGCTTTTGATCTATCCT+CGG | + | chr6_2:78567690-78567709 | None:intergenic | 40.0% |
| TGACTACGCGTTACTTCGAT+TGG | - | chr6_2:78564726-78564745 | Msa0929740:three_prime_UTR | 45.0% | |
| GGTCTCCCAAAGTTCACTAA+TGG | - | chr6_2:78564808-78564827 | Msa0929740:three_prime_UTR | 45.0% | |
| GATCTTTGTCCTGTTCTCTG+AGG | + | chr6_2:78565189-78565208 | None:intergenic | 45.0% | |
| ! | CCCAGCAATGAAGTATCTTG+AGG | + | chr6_2:78565533-78565552 | None:intergenic | 45.0% |
| AAACCCACCACATGGATTCA+GGG | + | chr6_2:78565666-78565685 | None:intergenic | 45.0% | |
| !!! | TATGGCCATGGATTTTTGGC+AGG | - | chr6_2:78566008-78566027 | Msa0929740:CDS | 45.0% |
| AATCGCCTGCCAAAAATCCA+TGG | + | chr6_2:78566016-78566035 | None:intergenic | 45.0% | |
| CACTCCAATCTCAAGATGGA+TGG | + | chr6_2:78566102-78566121 | None:intergenic | 45.0% | |
| GCAACACTCCAATCTCAAGA+TGG | + | chr6_2:78566106-78566125 | None:intergenic | 45.0% | |
| CGGAGATGATCTTCCTCTAT+CGG | + | chr6_2:78566370-78566389 | None:intergenic | 45.0% | |
| GTGTATGCAGGACTATGGTA+TGG | - | chr6_2:78566439-78566458 | Msa0929740:intron | 45.0% | |
| ACACAGTTTGGAAACCCGTA+AGG | + | chr6_2:78566770-78566789 | None:intergenic | 45.0% | |
| CATCCATCAAAGTACGATGC+CGG | + | chr6_2:78566825-78566844 | None:intergenic | 45.0% | |
| GGATGTACTCACTCATTCAG+AGG | - | chr6_2:78566840-78566859 | Msa0929740:intron | 45.0% | |
| !! | GCATAGGTTGATGTCAAGTG+TGG | + | chr6_2:78566894-78566913 | None:intergenic | 45.0% |
| TATGACAAGACTGACCCTAG+AGG | - | chr6_2:78567072-78567091 | Msa0929740:intron | 45.0% | |
| TCTAGCTGTTGGATCCTCTA+GGG | + | chr6_2:78567089-78567108 | None:intergenic | 45.0% | |
| ! | TTCTAGCTGTTGGATCCTCT+AGG | + | chr6_2:78567090-78567109 | None:intergenic | 45.0% |
| GGAGTAACTGAATGTGGTGA+CGG | - | chr6_2:78567330-78567349 | Msa0929740:intron | 45.0% | |
| !! | TGAATGTGGTGACGGTATTG+TGG | - | chr6_2:78567338-78567357 | Msa0929740:intron | 45.0% |
| !! | TGGTGACGGTATTGTGGTAA+AGG | - | chr6_2:78567344-78567363 | Msa0929740:intron | 45.0% |
| TCACCCATGGAGGATTTCTT+GGG | + | chr6_2:78567374-78567393 | None:intergenic | 45.0% | |
| ATCACCCATGGAGGATTTCT+TGG | + | chr6_2:78567375-78567394 | None:intergenic | 45.0% | |
| !! | TCCCCATACATCAGTTTTGG+AGG | + | chr6_2:78567421-78567440 | None:intergenic | 45.0% |
| ! | TCAAACCTCGCCCACTATTT+TGG | + | chr6_2:78567469-78567488 | None:intergenic | 45.0% |
| GAGGAATGGGAGGAAGGAAA+AGG | - | chr6_2:78564692-78564711 | Msa0929740:three_prime_UTR | 50.0% | |
| AGCCTTCCACATGTTTCTCC+TGG | - | chr6_2:78564919-78564938 | Msa0929740:CDS | 50.0% | |
| CACCAGGAGAAACATGTGGA+AGG | + | chr6_2:78564924-78564943 | None:intergenic | 50.0% | |
| GCAGGTAAGAAGACATGACC+AGG | - | chr6_2:78565054-78565073 | Msa0929740:intron | 50.0% | |
| ACTTCTCCCCTGAATCCATG+TGG | - | chr6_2:78565656-78565675 | Msa0929740:CDS | 50.0% | |
| AACCCACCACATGGATTCAG+GGG | + | chr6_2:78565665-78565684 | None:intergenic | 50.0% | |
| CAAACCCACCACATGGATTC+AGG | + | chr6_2:78565667-78565686 | None:intergenic | 50.0% | |
| CTCAAGATTGAGCCAACGGT+AGG | + | chr6_2:78566331-78566350 | None:intergenic | 50.0% | |
| !! | CTACCGTTGGCTCAATCTTG+AGG | - | chr6_2:78566329-78566348 | Msa0929740:intron | 50.0% |
| TGTCCGGCATCGTACTTTGA+TGG | - | chr6_2:78566819-78566838 | Msa0929740:CDS | 50.0% | |
| AGACCCCAAGAAATCCTCCA+TGG | - | chr6_2:78567367-78567386 | Msa0929740:intron | 50.0% | |
| GACCCCAAGAAATCCTCCAT+GGG | - | chr6_2:78567368-78567387 | Msa0929740:CDS | 50.0% | |
| CACCCATGGAGGATTTCTTG+GGG | + | chr6_2:78567373-78567392 | None:intergenic | 50.0% | |
| !! | TGACACCAAAATAGTGGGCG+AGG | - | chr6_2:78567461-78567480 | Msa0929740:CDS | 50.0% |
| TTAACTAGTGCCTCGGGGCA+CGG | + | chr6_2:78564503-78564522 | None:intergenic | 55.0% | |
| TCTCCCCTGAATCCATGTGG+TGG | - | chr6_2:78565659-78565678 | Msa0929740:CDS | 55.0% | |
| CTCCCCTGAATCCATGTGGT+GGG | - | chr6_2:78565660-78565679 | Msa0929740:CDS | 55.0% | |
| TAGGTTCTCCGCAAGTGTCC+CGG | - | chr6_2:78565874-78565893 | Msa0929740:CDS | 55.0% | |
| GCGAAGAATCTACAGCACGC+AGG | + | chr6_2:78566154-78566173 | None:intergenic | 55.0% | |
| ! | CTTGGCAAAGGCATAGGCTC+CGG | + | chr6_2:78566290-78566309 | None:intergenic | 55.0% |
| ! | GTTCACGTGTGTTGTTCGGG+TGG | - | chr6_2:78566997-78567016 | Msa0929740:intron | 55.0% |
| !! | TAAAGAGTGTCCGTGCCCCG+AGG | - | chr6_2:78564490-78564509 | Msa0929740:intron | 60.0% |
| GCAGGTATCCGGGACACTTG+CGG | + | chr6_2:78565885-78565904 | None:intergenic | 60.0% | |
| GGGTGGTAGCAGCAAAGCCA+TGG | - | chr6_2:78567014-78567033 | Msa0929740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 78564385 | 78567952 | 78564385 | ID=Msa0929740;Name=Msa0929740 |
| chr6_2 | mRNA | 78564385 | 78567952 | 78564385 | ID=Msa0929740-mRNA-1;Parent=Msa0929740;Name=Msa0929740-mRNA-1;_AED=0.19;_eAED=0.19;_QI=312|0.77|0.8|1|0.88|0.8|10|280|464 |
| chr6_2 | exon | 78564385 | 78564428 | 78564385 | ID=Msa0929740-mRNA-1:exon:13239;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78564613 | 78565070 | 78564613 | ID=Msa0929740-mRNA-1:exon:13238;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78565199 | 78565351 | 78565199 | ID=Msa0929740-mRNA-1:exon:13237;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78565476 | 78565534 | 78565476 | ID=Msa0929740-mRNA-1:exon:13236;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78565631 | 78565707 | 78565631 | ID=Msa0929740-mRNA-1:exon:13235;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78565807 | 78566027 | 78565807 | ID=Msa0929740-mRNA-1:exon:13234;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78566726 | 78566854 | 78566726 | ID=Msa0929740-mRNA-1:exon:13233;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78566944 | 78567005 | 78566944 | ID=Msa0929740-mRNA-1:exon:13232;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78567081 | 78567279 | 78567081 | ID=Msa0929740-mRNA-1:exon:13231;Parent=Msa0929740-mRNA-1 |
| chr6_2 | exon | 78567368 | 78567952 | 78567368 | ID=Msa0929740-mRNA-1:exon:13230;Parent=Msa0929740-mRNA-1 |
| chr6_2 | five_prime_UTR | 78567641 | 78567952 | 78567641 | ID=Msa0929740-mRNA-1:five_prime_utr;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78567368 | 78567640 | 78567368 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78567081 | 78567279 | 78567081 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78566944 | 78567005 | 78566944 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78566726 | 78566854 | 78566726 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78565807 | 78566027 | 78565807 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78565631 | 78565707 | 78565631 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78565476 | 78565534 | 78565476 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78565199 | 78565351 | 78565199 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | CDS | 78564849 | 78565070 | 78564849 | ID=Msa0929740-mRNA-1:cds;Parent=Msa0929740-mRNA-1 |
| chr6_2 | three_prime_UTR | 78564613 | 78564848 | 78564613 | ID=Msa0929740-mRNA-1:three_prime_utr;Parent=Msa0929740-mRNA-1 |
| chr6_2 | three_prime_UTR | 78564385 | 78564428 | 78564385 | ID=Msa0929740-mRNA-1:three_prime_utr;Parent=Msa0929740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
