Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354050 | KEH21431.1 | 88.785 | 321 | 22 | 2 | 1 | 319 | 138 | 446 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354050 | sp|Q6NKX5|POT1B_ARATH | 35.952 | 331 | 186 | 7 | 1 | 316 | 132 | 451 | 4.70e-52 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354050 | A0A072TW96 | 88.785 | 321 | 22 | 2 | 1 | 319 | 138 | 446 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106370 | Msa1354050 | -0.815574 | 8.622409e-52 | -8.615850e-47 |
| Msa0575860 | Msa1354050 | 0.837433 | 5.212974e-57 | -8.615850e-47 |
| Msa0929740 | Msa1354050 | 0.911675 | 4.646267e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354050 | MtrunA17_Chr8g0393131 | 86.228 | 334 | 31 | 3 | 1 | 319 | 138 | 471 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354050 | AT5G06310.1 | 35.952 | 331 | 186 | 7 | 1 | 316 | 132 | 451 | 4.78e-53 | 181 |
| Msa1354050 | AT2G05210.1 | 36.129 | 310 | 171 | 10 | 24 | 317 | 168 | 466 | 1.66e-50 | 174 |
| Msa1354050 | AT2G05210.3 | 36.129 | 310 | 171 | 10 | 24 | 317 | 168 | 466 | 1.66e-50 | 174 |
| Msa1354050 | AT2G05210.2 | 36.129 | 310 | 171 | 10 | 24 | 317 | 168 | 466 | 1.66e-50 | 174 |
Find 80 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTGAGGAATCTGAAAAT+TGG | 0.151989 | tig0014199:-59 | None:intergenic |
| CAAAGAAGGTTACTTAAATT+TGG | 0.164890 | tig0014199:+186 | Msa1354050:CDS |
| TCAAACCTCGCCCACTATTT+TGG | 0.188762 | tig0014199:-2293 | None:intergenic |
| GTGTCCTTAACATTGATAAA+TGG | 0.206024 | tig0014199:+1216 | Msa1354050:CDS |
| TTATGTAAATTATTTGTATT+TGG | 0.230725 | tig0014199:+2490 | Msa1354050:three_prime_UTR |
| ATAATTGGTTTCTCTATGTT+TGG | 0.285155 | tig0014199:+391 | Msa1354050:CDS |
| CTTGTAATACGTAAAGATTC+AGG | 0.289688 | tig0014199:-1512 | None:intergenic |
| ACTTCCCCATACATCAGTTT+TGG | 0.291105 | tig0014199:-2248 | None:intergenic |
| GGGAGTCTGCAAAAGATAAT+TGG | 0.303591 | tig0014199:+376 | Msa1354050:CDS |
| ATCACCCATGGAGGATTTCT+TGG | 0.307382 | tig0014199:-2199 | None:intergenic |
| GTAGAATTAATTTCATCTTC+AGG | 0.308207 | tig0014199:-1077 | None:intergenic |
| CTAAGTTCACGTGTGTTGTT+CGG | 0.336291 | tig0014199:+1820 | Msa1354050:CDS |
| CACATTGTATATATTACATT+TGG | 0.344373 | tig0014199:-432 | None:intergenic |
| TAAGTTCACGTGTGTTGTTC+GGG | 0.356727 | tig0014199:+1821 | Msa1354050:CDS |
| GTATGGGGAAGTAGAACTTT+TGG | 0.363372 | tig0014199:+2259 | Msa1354050:CDS |
| TAATTGGTTTCTCTATGTTT+GGG | 0.364161 | tig0014199:+392 | Msa1354050:CDS |
| ACCTCAAGATACTTCATTGC+TGG | 0.366802 | tig0014199:+355 | Msa1354050:intron |
| TTGAGAGTGAATTACCTTGC+AGG | 0.383097 | tig0014199:-209 | None:intergenic |
| TGACCCATTTATCAATGTTA+AGG | 0.390781 | tig0014199:-1220 | None:intergenic |
| TCACCCATGGAGGATTTCTT+GGG | 0.397379 | tig0014199:-2198 | None:intergenic |
| AATATTTGACACCAAAATAG+TGG | 0.401530 | tig0014199:+2282 | Msa1354050:CDS |
| CCTTGAGGAATCTGAAAATT+GGG | 0.414035 | tig0014199:-58 | None:intergenic |
| TTAAAGTGTATGCAGGACTA+TGG | 0.426620 | tig0014199:+1261 | Msa1354050:intron |
| TGTCCTTAACATTGATAAAT+GGG | 0.428681 | tig0014199:+1217 | Msa1354050:CDS |
| GAACGAATATCGTTGAAATC+AGG | 0.431437 | tig0014199:+1467 | Msa1354050:CDS |
| ATACCTCCAAAACTGATGTA+TGG | 0.431794 | tig0014199:+2242 | Msa1354050:CDS |
| AAAAGTTATGCTCTCCTACT+AGG | 0.435695 | tig0014199:+1871 | Msa1354050:CDS |
| AGGAAGTTAGACAGATTACT+TGG | 0.452007 | tig0014199:+2136 | Msa1354050:CDS |
| TACCTCCAAAACTGATGTAT+GGG | 0.462363 | tig0014199:+2243 | Msa1354050:CDS |
| ATTGTATATATTACATTTGG+TGG | 0.462811 | tig0014199:-429 | None:intergenic |
| TTCTACACGTACATTACATC+CGG | 0.466383 | tig0014199:+1094 | Msa1354050:CDS |
| AGGTTAATCACGATCATGTC+CGG | 0.481568 | tig0014199:+1630 | Msa1354050:CDS |
| AATCCCAAGACTATTGCAAA+AGG | 0.484895 | tig0014199:-2339 | None:intergenic |
| CTACCGTTGGCTCAATCTTG+AGG | 0.486330 | tig0014199:+1156 | Msa1354050:CDS |
| AATTTGATGGTCCACATTTG+AGG | 0.487270 | tig0014199:-1321 | None:intergenic |
| TTGTATATATTACATTTGGT+GGG | 0.496921 | tig0014199:-428 | None:intergenic |
| TGGTTTCTCTATGTTTGGGA+TGG | 0.498067 | tig0014199:+396 | Msa1354050:CDS |
| TGTCCGGCATCGTACTTTGA+TGG | 0.502519 | tig0014199:+1646 | Msa1354050:CDS |
| TTACTTAAATTTGGCCTGCA+AGG | 0.505621 | tig0014199:+195 | Msa1354050:CDS |
| TTCTAGCTGTTGGATCCTCT+AGG | 0.508462 | tig0014199:-1914 | None:intergenic |
| CGGGCATTGCAAATATGAAA+AGG | 0.508721 | tig0014199:+2116 | Msa1354050:CDS |
| CCTCAAGATACTTCATTGCT+GGG | 0.511978 | tig0014199:+356 | Msa1354050:intron |
| AAAGTACGTAGTATATCTCT+TGG | 0.512985 | tig0014199:-1131 | None:intergenic |
| AAAGCATGGATTCTAGCTGT+TGG | 0.520950 | tig0014199:-1924 | None:intergenic |
| CTTCACCAATTACAAAAGCA+TGG | 0.524475 | tig0014199:-1938 | None:intergenic |
| TGGTGACGGTATTGTGGTAA+AGG | 0.528847 | tig0014199:+2171 | Msa1354050:CDS |
| CTTGGCAAAGGCATAGGCTC+CGG | 0.530366 | tig0014199:-1113 | None:intergenic |
| ATATCTCTTGGCAAAGGCAT+AGG | 0.533528 | tig0014199:-1119 | None:intergenic |
| AAATCAGGAACAATTGCTGT+TGG | 0.535740 | tig0014199:+1482 | Msa1354050:CDS |
| CGGAGATGATCTTCCTCTAT+CGG | 0.547270 | tig0014199:-1194 | None:intergenic |
| CTTGTCATATACTTCCTAGT+AGG | 0.548949 | tig0014199:-1885 | None:intergenic |
| TGTATATATTACATTTGGTG+GGG | 0.549431 | tig0014199:-427 | None:intergenic |
| AATTATTTGTATTTGGTCCG+AGG | 0.554293 | tig0014199:+2497 | Msa1354050:three_prime_UTR |
| TCTAGCTGTTGGATCCTCTA+GGG | 0.556090 | tig0014199:-1913 | None:intergenic |
| ATCCCAAGACTATTGCAAAA+GGG | 0.558229 | tig0014199:-2338 | None:intergenic |
| AAATTGTTAAGCTTAGAAGA+TGG | 0.561270 | tig0014199:+32 | Msa1354050:CDS |
| GTGTATGCAGGACTATGGTA+TGG | 0.567558 | tig0014199:+1266 | Msa1354050:intron |
| ACGCTAAGAGAAATCAAAGA+AGG | 0.571729 | tig0014199:+172 | Msa1354050:CDS |
| TGACACCAAAATAGTGGGCG+AGG | 0.575207 | tig0014199:+2288 | Msa1354050:CDS |
| AGACCCCAAGAAATCCTCCA+TGG | 0.582960 | tig0014199:+2194 | Msa1354050:CDS |
| CACCCATGGAGGATTTCTTG+GGG | 0.592410 | tig0014199:-2197 | None:intergenic |
| AATCCTCAAGATTGAGCCAA+CGG | 0.594224 | tig0014199:-1159 | None:intergenic |
| CATCCATCAAAGTACGATGC+CGG | 0.606271 | tig0014199:-1649 | None:intergenic |
| GTTCACGTGTGTTGTTCGGG+TGG | 0.607327 | tig0014199:+1824 | Msa1354050:CDS |
| ATATTTGACACCAAAATAGT+GGG | 0.607462 | tig0014199:+2283 | Msa1354050:CDS |
| CGTAGTATATCTCTTGGCAA+AGG | 0.607655 | tig0014199:-1125 | None:intergenic |
| ATATCGAATCTTTGATTGTG+AGG | 0.610806 | tig0014199:-1297 | None:intergenic |
| TTAATACAAACTATCACCCA+TGG | 0.612169 | tig0014199:-2211 | None:intergenic |
| GGGTGGTAGCAGCAAAGCCA+TGG | 0.613819 | tig0014199:+1841 | Msa1354050:CDS |
| TGAATGTGGTGACGGTATTG+TGG | 0.621459 | tig0014199:+2165 | Msa1354050:CDS |
| GACCCCAAGAAATCCTCCAT+GGG | 0.630467 | tig0014199:+2195 | Msa1354050:CDS |
| ACCTCCAAAACTGATGTATG+GGG | 0.632813 | tig0014199:+2244 | Msa1354050:CDS |
| GGATGTACTCACTCATTCAG+AGG | 0.636868 | tig0014199:+1667 | Msa1354050:CDS |
| TTTGATATACTGATATGATG+TGG | 0.644054 | tig0014199:+2311 | Msa1354050:exon |
| CTCAAGATTGAGCCAACGGT+AGG | 0.647732 | tig0014199:-1155 | None:intergenic |
| ATTTATCAATGTTAAGGACA+CGG | 0.661104 | tig0014199:-1214 | None:intergenic |
| TTACTTGGAGTAACTGAATG+TGG | 0.687106 | tig0014199:+2151 | Msa1354050:CDS |
| GGAGTAACTGAATGTGGTGA+CGG | 0.706321 | tig0014199:+2157 | Msa1354050:CDS |
| ATACAAACTATCACCCATGG+AGG | 0.711847 | tig0014199:-2208 | None:intergenic |
| TATGACAAGACTGACCCTAG+AGG | 0.735776 | tig0014199:+1899 | Msa1354050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAAATAATAAATGTTT+AGG | + | tig0014199:681-700 | Msa1354050:intron | 10.0% |
| !! | TTATGTAAATTATTTGTATT+TGG | + | tig0014199:2490-2509 | Msa1354050:three_prime_UTR | 10.0% |
| !! | ACTTCATTTCTTAATATTTA+AGG | + | tig0014199:113-132 | Msa1354050:intron | 15.0% |
| !! | TAACAAAAATATAATGACAT+TGG | - | tig0014199:1420-1439 | None:intergenic | 15.0% |
| !! | AAAAAATCGTATTTATCCAA+AGG | - | tig0014199:267-286 | None:intergenic | 20.0% |
| !! | TTGTATATATTACATTTGGT+GGG | - | tig0014199:431-450 | None:intergenic | 20.0% |
| !! | ATTGTATATATTACATTTGG+TGG | - | tig0014199:432-451 | None:intergenic | 20.0% |
| !! | CACATTGTATATATTACATT+TGG | - | tig0014199:435-454 | None:intergenic | 20.0% |
| !!! | ATTGTATTGTAATTTGTTGA+TGG | + | tig0014199:519-538 | Msa1354050:intron | 20.0% |
| !! | AATTGTATATGGTATCTTAA+CGG | + | tig0014199:890-909 | Msa1354050:intron | 20.0% |
| !!! | AAACATATCAAATTCCTTTT+AGG | - | tig0014199:1042-1061 | None:intergenic | 20.0% |
| !!! | ATATATGGTTTGTATAGATT+AGG | + | tig0014199:1386-1405 | Msa1354050:intron | 20.0% |
| !!! | AAACTCTTTCCTTTTTTTAT+TGG | + | tig0014199:2412-2431 | Msa1354050:three_prime_UTR | 20.0% |
| ! | AAATTGTTAAGCTTAGAAGA+TGG | + | tig0014199:32-51 | Msa1354050:CDS | 25.0% |
| ! | CAAAGAAGGTTACTTAAATT+TGG | + | tig0014199:186-205 | Msa1354050:CDS | 25.0% |
| ! | CAGCAACAAAAAAACATTTA+AGG | - | tig0014199:320-339 | None:intergenic | 25.0% |
| !! | ATAATTGGTTTCTCTATGTT+TGG | + | tig0014199:391-410 | Msa1354050:CDS | 25.0% |
| !! | TAATTGGTTTCTCTATGTTT+GGG | + | tig0014199:392-411 | Msa1354050:CDS | 25.0% |
| !! | TGTATATATTACATTTGGTG+GGG | - | tig0014199:430-449 | None:intergenic | 25.0% |
| !! | TTACACAATGTACTTTTCAA+AGG | + | tig0014199:583-602 | Msa1354050:intron | 25.0% |
| ! | AATCCTAATTCCTGAAATAA+GGG | - | tig0014199:763-782 | None:intergenic | 25.0% |
| ! | AAATCCTAATTCCTGAAATA+AGG | - | tig0014199:764-783 | None:intergenic | 25.0% |
| ! | AACATGAATTCTTGCTAATA+TGG | + | tig0014199:816-835 | Msa1354050:intron | 25.0% |
| ! | TAACTGCTAAGAATTGTATA+TGG | + | tig0014199:879-898 | Msa1354050:intron | 25.0% |
| ! | TTTATGTTTGCAATCCTAAA+AGG | + | tig0014199:1025-1044 | Msa1354050:intron | 25.0% |
| ! | ATATGTTTGTTTATGAATGC+AGG | + | tig0014199:1054-1073 | Msa1354050:intron | 25.0% |
| ! | GTAGAATTAATTTCATCTTC+AGG | - | tig0014199:1080-1099 | None:intergenic | 25.0% |
| ! | ATTTATCAATGTTAAGGACA+CGG | - | tig0014199:1217-1236 | None:intergenic | 25.0% |
| ! | TGTCCTTAACATTGATAAAT+GGG | + | tig0014199:1217-1236 | Msa1354050:CDS | 25.0% |
| ! | ATATTATGACTCCACTAATT+TGG | - | tig0014199:1368-1387 | None:intergenic | 25.0% |
| ! | TAGTGGAGTCATAATATATA+TGG | + | tig0014199:1371-1390 | Msa1354050:intron | 25.0% |
| !!! | TAAAGTTTTAGCTTTCCTTA+CGG | + | tig0014199:1579-1598 | Msa1354050:intron | 25.0% |
| ! | CATAATATTGATCATTGCAT+AGG | - | tig0014199:1737-1756 | None:intergenic | 25.0% |
| !!! | AAAACAATAGTGTTTTGAGA+GGG | - | tig0014199:1762-1781 | None:intergenic | 25.0% |
| !!! | AAAAACAATAGTGTTTTGAG+AGG | - | tig0014199:1763-1782 | None:intergenic | 25.0% |
| ! | TATACTCGTTCATTTATTGA+AGG | + | tig0014199:1791-1810 | Msa1354050:intron | 25.0% |
| ! | AATATTTGACACCAAAATAG+TGG | + | tig0014199:2282-2301 | Msa1354050:CDS | 25.0% |
| ! | ATATTTGACACCAAAATAGT+GGG | + | tig0014199:2283-2302 | Msa1354050:CDS | 25.0% |
| ! | TTTGATATACTGATATGATG+TGG | + | tig0014199:2311-2330 | Msa1354050:exon | 25.0% |
| !! | TAGCTTGTACCAATAAAAAA+AGG | - | tig0014199:2424-2443 | None:intergenic | 25.0% |
| GAAATGAGTTAAATACCTTG+AGG | - | tig0014199:76-95 | None:intergenic | 30.0% | |
| ! | TACTATCAGTTTAAGACCTT+TGG | + | tig0014199:248-267 | Msa1354050:intron | 30.0% |
| ! | TTTTATTACTTGCAGGTATC+CGG | - | tig0014199:722-741 | None:intergenic | 30.0% |
| GATACCTGCAAGTAATAAAA+CGG | + | tig0014199:722-741 | Msa1354050:intron | 30.0% | |
| AATAAAACGGTCAAGATTGA+AGG | + | tig0014199:735-754 | Msa1354050:intron | 30.0% | |
| TAGAAAATTCACTGACAACT+CGG | + | tig0014199:793-812 | Msa1354050:intron | 30.0% | |
| AAAGTACGTAGTATATCTCT+TGG | - | tig0014199:1134-1153 | None:intergenic | 30.0% | |
| GTGTCCTTAACATTGATAAA+TGG | + | tig0014199:1216-1235 | Msa1354050:CDS | 30.0% | |
| TGACCCATTTATCAATGTTA+AGG | - | tig0014199:1223-1242 | None:intergenic | 30.0% | |
| ATACATCTTAAAGTGTATGC+AGG | + | tig0014199:1254-1273 | Msa1354050:intron | 30.0% | |
| ATATCGAATCTTTGATTGTG+AGG | - | tig0014199:1300-1319 | None:intergenic | 30.0% | |
| CTTGTAATACGTAAAGATTC+AGG | - | tig0014199:1515-1534 | None:intergenic | 30.0% | |
| !!! | AAAGTTTTAGCTTTCCTTAC+GGG | + | tig0014199:1580-1599 | Msa1354050:intron | 30.0% |
| TGTAAGGATAAAACACAGTT+TGG | - | tig0014199:1609-1628 | None:intergenic | 30.0% | |
| ! | AGAATCCATGCTTTTGTAAT+TGG | + | tig0014199:1933-1952 | Msa1354050:CDS | 30.0% |
| ! | CTTTTGTAATTGGTGAAGAT+GGG | + | tig0014199:1943-1962 | Msa1354050:CDS | 30.0% |
| ! | TTTTGTAATTGGTGAAGATG+GGG | + | tig0014199:1944-1963 | Msa1354050:CDS | 30.0% |
| TTAATACAAACTATCACCCA+TGG | - | tig0014199:2214-2233 | None:intergenic | 30.0% | |
| AATTATTTGTATTTGGTCCG+AGG | + | tig0014199:2497-2516 | Msa1354050:three_prime_UTR | 30.0% | |
| CCTTGAGGAATCTGAAAATT+GGG | - | tig0014199:61-80 | None:intergenic | 35.0% | |
| ACCTTGAGGAATCTGAAAAT+TGG | - | tig0014199:62-81 | None:intergenic | 35.0% | |
| CTTAGCGTAGAAAAAGCAAA+TGG | - | tig0014199:160-179 | None:intergenic | 35.0% | |
| ACGCTAAGAGAAATCAAAGA+AGG | + | tig0014199:172-191 | Msa1354050:CDS | 35.0% | |
| TTACTTAAATTTGGCCTGCA+AGG | + | tig0014199:195-214 | Msa1354050:CDS | 35.0% | |
| !! | TACTTGTTGTTACCTTTCCA+AGG | + | tig0014199:287-306 | Msa1354050:intron | 35.0% |
| ACATTTAAGGATCAGAACCT+TGG | - | tig0014199:307-326 | None:intergenic | 35.0% | |
| ! | TTTTATTCAAACCCACCACA+TGG | - | tig0014199:500-519 | None:intergenic | 35.0% |
| AAAGGCAAGTTACTTGACAT+AGG | + | tig0014199:601-620 | Msa1354050:intron | 35.0% | |
| CAAGTTACTTGACATAGGAT+AGG | + | tig0014199:606-625 | Msa1354050:intron | 35.0% | |
| TTTATTACTTGCAGGTATCC+GGG | - | tig0014199:721-740 | None:intergenic | 35.0% | |
| !! | TTGACCGTTTTATTACTTGC+AGG | - | tig0014199:729-748 | None:intergenic | 35.0% |
| ! | ATTGAAGGTTCCCTTATTTC+AGG | + | tig0014199:750-769 | Msa1354050:intron | 35.0% |
| ! | GTTCCCTTATTTCAGGAATT+AGG | + | tig0014199:757-776 | Msa1354050:intron | 35.0% |
| AATTCTTGCTAATATGGCCA+TGG | + | tig0014199:822-841 | Msa1354050:intron | 35.0% | |
| ! | CTAATATGGCCATGGATTTT+TGG | + | tig0014199:830-849 | Msa1354050:intron | 35.0% |
| TACAATTCTTAGCAGTTAGC+TGG | - | tig0014199:877-896 | None:intergenic | 35.0% | |
| TTCTACACGTACATTACATC+CGG | + | tig0014199:1094-1113 | Msa1354050:CDS | 35.0% | |
| ! | TACTTTTGAACAACCGATAG+AGG | + | tig0014199:1181-1200 | Msa1354050:CDS | 35.0% |
| TTAAAGTGTATGCAGGACTA+TGG | + | tig0014199:1261-1280 | Msa1354050:intron | 35.0% | |
| GATTCGATATACCTCAAATG+TGG | + | tig0014199:1310-1329 | Msa1354050:intron | 35.0% | |
| ! | AATTTGATGGTCCACATTTG+AGG | - | tig0014199:1324-1343 | None:intergenic | 35.0% |
| TTTGGCGTTCGATAATTTGA+TGG | - | tig0014199:1337-1356 | None:intergenic | 35.0% | |
| ATCAAATTATCGAACGCCAA+AGG | + | tig0014199:1336-1355 | Msa1354050:intron | 35.0% | |
| ! | ACTAATTTGGTAACCACCTT+TGG | - | tig0014199:1355-1374 | None:intergenic | 35.0% |
| AAAGGTGGTTACCAAATTAG+TGG | + | tig0014199:1354-1373 | Msa1354050:intron | 35.0% | |
| TGTTATGTTTGTGTTGAACC+AGG | + | tig0014199:1435-1454 | Msa1354050:intron | 35.0% | |
| TATTCGTTCATCATACAACC+TGG | - | tig0014199:1456-1475 | None:intergenic | 35.0% | |
| GAACGAATATCGTTGAAATC+AGG | + | tig0014199:1467-1486 | Msa1354050:CDS | 35.0% | |
| AAATCAGGAACAATTGCTGT+TGG | + | tig0014199:1482-1501 | Msa1354050:CDS | 35.0% | |
| ! | ACTGTGTTTTATCCTTACAG+AGG | + | tig0014199:1610-1629 | Msa1354050:intron | 35.0% |
| AAAAGTTATGCTCTCCTACT+AGG | + | tig0014199:1871-1890 | Msa1354050:CDS | 35.0% | |
| CTTGTCATATACTTCCTAGT+AGG | - | tig0014199:1888-1907 | None:intergenic | 35.0% | |
| CTTCACCAATTACAAAAGCA+TGG | - | tig0014199:1941-1960 | None:intergenic | 35.0% | |
| ! | GCTTTTGTAATTGGTGAAGA+TGG | + | tig0014199:1942-1961 | Msa1354050:CDS | 35.0% |
| AAAAAGAGTCTCCTGTCATA+GGG | - | tig0014199:2086-2105 | None:intergenic | 35.0% | |
| ! | TTTTCATATTTGCAATGCCC+GGG | - | tig0014199:2117-2136 | None:intergenic | 35.0% |
| ! | CTTTTCATATTTGCAATGCC+CGG | - | tig0014199:2118-2137 | None:intergenic | 35.0% |
| AGGAAGTTAGACAGATTACT+TGG | + | tig0014199:2136-2155 | Msa1354050:CDS | 35.0% | |
| TTACTTGGAGTAACTGAATG+TGG | + | tig0014199:2151-2170 | Msa1354050:CDS | 35.0% | |
| ATACCTCCAAAACTGATGTA+TGG | + | tig0014199:2242-2261 | Msa1354050:CDS | 35.0% | |
| TACCTCCAAAACTGATGTAT+GGG | + | tig0014199:2243-2262 | Msa1354050:CDS | 35.0% | |
| ! | AAACCCTTTTGCAATAGTCT+TGG | + | tig0014199:2335-2354 | Msa1354050:three_prime_UTR | 35.0% |
| ! | AACCCTTTTGCAATAGTCTT+GGG | + | tig0014199:2336-2355 | Msa1354050:three_prime_UTR | 35.0% |
| ATCCCAAGACTATTGCAAAA+GGG | - | tig0014199:2341-2360 | None:intergenic | 35.0% | |
| AATCCCAAGACTATTGCAAA+AGG | - | tig0014199:2342-2361 | None:intergenic | 35.0% | |
| !! | TTTTGCAATAGTCTTGGGAT+TGG | + | tig0014199:2341-2360 | Msa1354050:three_prime_UTR | 35.0% |
| ! | CCCAATTTTCAGATTCCTCA+AGG | + | tig0014199:58-77 | Msa1354050:CDS | 40.0% |
| TTGAGAGTGAATTACCTTGC+AGG | - | tig0014199:212-231 | None:intergenic | 40.0% | |
| TAAGGATCAGAACCTTGGAA+AGG | - | tig0014199:302-321 | None:intergenic | 40.0% | |
| ACCTCAAGATACTTCATTGC+TGG | + | tig0014199:355-374 | Msa1354050:intron | 40.0% | |
| CCTCAAGATACTTCATTGCT+GGG | + | tig0014199:356-375 | Msa1354050:intron | 40.0% | |
| GGGAGTCTGCAAAAGATAAT+TGG | + | tig0014199:376-395 | Msa1354050:CDS | 40.0% | |
| TGGTTTCTCTATGTTTGGGA+TGG | + | tig0014199:396-415 | Msa1354050:CDS | 40.0% | |
| ! | ATCTCTTGTTGATTGAGCAG+TGG | + | tig0014199:544-563 | Msa1354050:intron | 40.0% |
| GTAACCATCCATCTTGAGAT+TGG | + | tig0014199:921-940 | Msa1354050:intron | 40.0% | |
| ! | ATATCTCTTGGCAAAGGCAT+AGG | - | tig0014199:1122-1141 | None:intergenic | 40.0% |
| CGTAGTATATCTCTTGGCAA+AGG | - | tig0014199:1128-1147 | None:intergenic | 40.0% | |
| AATCCTCAAGATTGAGCCAA+CGG | - | tig0014199:1162-1181 | None:intergenic | 40.0% | |
| AAATTATCGAACGCCAAAGG+TGG | + | tig0014199:1339-1358 | Msa1354050:intron | 40.0% | |
| GATCGTGATTAACCTCTGTA+AGG | - | tig0014199:1625-1644 | None:intergenic | 40.0% | |
| AGGTTAATCACGATCATGTC+CGG | + | tig0014199:1630-1649 | Msa1354050:CDS | 40.0% | |
| !! | CATAGGTTGATGTCAAGTGT+GGG | - | tig0014199:1720-1739 | None:intergenic | 40.0% |
| ! | CTAAGTTCACGTGTGTTGTT+CGG | + | tig0014199:1820-1839 | Msa1354050:CDS | 40.0% |
| ! | TAAGTTCACGTGTGTTGTTC+GGG | + | tig0014199:1821-1840 | Msa1354050:CDS | 40.0% |
| ! | CATAACTTTTCAGCTTGCCA+TGG | - | tig0014199:1861-1880 | None:intergenic | 40.0% |
| ! | AAAGCATGGATTCTAGCTGT+TGG | - | tig0014199:1927-1946 | None:intergenic | 40.0% |
| TTTGTCGACCATATTCTGTG+TGG | + | tig0014199:2037-2056 | Msa1354050:intron | 40.0% | |
| AGAATCAGCCACACAGAATA+TGG | - | tig0014199:2048-2067 | None:intergenic | 40.0% | |
| CTGCTATAATACCCTATGAC+AGG | + | tig0014199:2072-2091 | Msa1354050:intron | 40.0% | |
| CAAAAAGAGTCTCCTGTCAT+AGG | - | tig0014199:2087-2106 | None:intergenic | 40.0% | |
| ! | TGACAGGAGACTCTTTTTGA+TGG | + | tig0014199:2088-2107 | Msa1354050:intron | 40.0% |
| !! | GACTCTTTTTGATGGTTACC+CGG | + | tig0014199:2096-2115 | Msa1354050:CDS | 40.0% |
| !! | ACTCTTTTTGATGGTTACCC+GGG | + | tig0014199:2097-2116 | Msa1354050:CDS | 40.0% |
| ! | CGGGCATTGCAAATATGAAA+AGG | + | tig0014199:2116-2135 | Msa1354050:CDS | 40.0% |
| ATACAAACTATCACCCATGG+AGG | - | tig0014199:2211-2230 | None:intergenic | 40.0% | |
| ACCTCCAAAACTGATGTATG+GGG | + | tig0014199:2244-2263 | Msa1354050:CDS | 40.0% | |
| ! | ACTTCCCCATACATCAGTTT+TGG | - | tig0014199:2251-2270 | None:intergenic | 40.0% |
| ! | GTATGGGGAAGTAGAACTTT+TGG | + | tig0014199:2259-2278 | Msa1354050:CDS | 40.0% |
| ! | TCACGCTTTTGATCTATCCT+CGG | - | tig0014199:2517-2536 | None:intergenic | 40.0% |
| ! | CCCAGCAATGAAGTATCTTG+AGG | - | tig0014199:359-378 | None:intergenic | 45.0% |
| AAACCCACCACATGGATTCA+GGG | - | tig0014199:492-511 | None:intergenic | 45.0% | |
| !!! | TATGGCCATGGATTTTTGGC+AGG | + | tig0014199:834-853 | Msa1354050:intron | 45.0% |
| AATCGCCTGCCAAAAATCCA+TGG | - | tig0014199:842-861 | None:intergenic | 45.0% | |
| CACTCCAATCTCAAGATGGA+TGG | - | tig0014199:928-947 | None:intergenic | 45.0% | |
| GCAACACTCCAATCTCAAGA+TGG | - | tig0014199:932-951 | None:intergenic | 45.0% | |
| ! | CTACGTACTTTTCCTACCGT+TGG | + | tig0014199:1143-1162 | Msa1354050:CDS | 45.0% |
| CGGAGATGATCTTCCTCTAT+CGG | - | tig0014199:1197-1216 | None:intergenic | 45.0% | |
| GTGTATGCAGGACTATGGTA+TGG | + | tig0014199:1266-1285 | Msa1354050:intron | 45.0% | |
| ACACAGTTTGGAAACCCGTA+AGG | - | tig0014199:1597-1616 | None:intergenic | 45.0% | |
| CATCCATCAAAGTACGATGC+CGG | - | tig0014199:1652-1671 | None:intergenic | 45.0% | |
| GGATGTACTCACTCATTCAG+AGG | + | tig0014199:1667-1686 | Msa1354050:CDS | 45.0% | |
| !! | GCATAGGTTGATGTCAAGTG+TGG | - | tig0014199:1721-1740 | None:intergenic | 45.0% |
| TATGACAAGACTGACCCTAG+AGG | + | tig0014199:1899-1918 | Msa1354050:CDS | 45.0% | |
| TCTAGCTGTTGGATCCTCTA+GGG | - | tig0014199:1916-1935 | None:intergenic | 45.0% | |
| ! | TTCTAGCTGTTGGATCCTCT+AGG | - | tig0014199:1917-1936 | None:intergenic | 45.0% |
| GGAGTAACTGAATGTGGTGA+CGG | + | tig0014199:2157-2176 | Msa1354050:CDS | 45.0% | |
| !! | TGAATGTGGTGACGGTATTG+TGG | + | tig0014199:2165-2184 | Msa1354050:CDS | 45.0% |
| !! | TGGTGACGGTATTGTGGTAA+AGG | + | tig0014199:2171-2190 | Msa1354050:CDS | 45.0% |
| TCACCCATGGAGGATTTCTT+GGG | - | tig0014199:2201-2220 | None:intergenic | 45.0% | |
| ATCACCCATGGAGGATTTCT+TGG | - | tig0014199:2202-2221 | None:intergenic | 45.0% | |
| !! | TCCCCATACATCAGTTTTGG+AGG | - | tig0014199:2248-2267 | None:intergenic | 45.0% |
| ! | TCAAACCTCGCCCACTATTT+TGG | - | tig0014199:2296-2315 | None:intergenic | 45.0% |
| ACTTCTCCCCTGAATCCATG+TGG | + | tig0014199:482-501 | Msa1354050:intron | 50.0% | |
| AACCCACCACATGGATTCAG+GGG | - | tig0014199:491-510 | None:intergenic | 50.0% | |
| CAAACCCACCACATGGATTC+AGG | - | tig0014199:493-512 | None:intergenic | 50.0% | |
| CTCAAGATTGAGCCAACGGT+AGG | - | tig0014199:1158-1177 | None:intergenic | 50.0% | |
| !! | CTACCGTTGGCTCAATCTTG+AGG | + | tig0014199:1156-1175 | Msa1354050:CDS | 50.0% |
| TGTCCGGCATCGTACTTTGA+TGG | + | tig0014199:1646-1665 | Msa1354050:CDS | 50.0% | |
| AGACCCCAAGAAATCCTCCA+TGG | + | tig0014199:2194-2213 | Msa1354050:CDS | 50.0% | |
| GACCCCAAGAAATCCTCCAT+GGG | + | tig0014199:2195-2214 | Msa1354050:CDS | 50.0% | |
| CACCCATGGAGGATTTCTTG+GGG | - | tig0014199:2200-2219 | None:intergenic | 50.0% | |
| !! | TGACACCAAAATAGTGGGCG+AGG | + | tig0014199:2288-2307 | Msa1354050:CDS | 50.0% |
| TCTCCCCTGAATCCATGTGG+TGG | + | tig0014199:485-504 | Msa1354050:intron | 55.0% | |
| CTCCCCTGAATCCATGTGGT+GGG | + | tig0014199:486-505 | Msa1354050:intron | 55.0% | |
| TAGGTTCTCCGCAAGTGTCC+CGG | + | tig0014199:700-719 | Msa1354050:intron | 55.0% | |
| GCGAAGAATCTACAGCACGC+AGG | - | tig0014199:980-999 | None:intergenic | 55.0% | |
| ! | CTTGGCAAAGGCATAGGCTC+CGG | - | tig0014199:1116-1135 | None:intergenic | 55.0% |
| ! | GTTCACGTGTGTTGTTCGGG+TGG | + | tig0014199:1824-1843 | Msa1354050:CDS | 55.0% |
| GCAGGTATCCGGGACACTTG+CGG | - | tig0014199:711-730 | None:intergenic | 60.0% | |
| GGGTGGTAGCAGCAAAGCCA+TGG | + | tig0014199:1841-1860 | Msa1354050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014199 | gene | 22 | 2554 | 22 | ID=Msa1354050;Name=Msa1354050 |
| tig0014199 | mRNA | 22 | 2554 | 22 | ID=Msa1354050-mRNA-1;Parent=Msa1354050;Name=Msa1354050-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.75|0.66|1|0.62|0.55|9|239|320 |
| tig0014199 | exon | 22 | 79 | 22 | ID=Msa1354050-mRNA-1:exon:8934;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 155 | 216 | 155 | ID=Msa1354050-mRNA-1:exon:8935;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 363 | 451 | 363 | ID=Msa1354050-mRNA-1:exon:8936;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 1076 | 1265 | 1076 | ID=Msa1354050-mRNA-1:exon:8937;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 1276 | 1328 | 1276 | ID=Msa1354050-mRNA-1:exon:8938;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 1457 | 1533 | 1457 | ID=Msa1354050-mRNA-1:exon:8939;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 1630 | 1688 | 1630 | ID=Msa1354050-mRNA-1:exon:8940;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 1813 | 1965 | 1813 | ID=Msa1354050-mRNA-1:exon:8941;Parent=Msa1354050-mRNA-1 |
| tig0014199 | exon | 2094 | 2554 | 2094 | ID=Msa1354050-mRNA-1:exon:8942;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 22 | 79 | 22 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 155 | 216 | 155 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 363 | 451 | 363 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 1076 | 1265 | 1076 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 1276 | 1328 | 1276 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 1457 | 1533 | 1457 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 1630 | 1688 | 1630 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 1813 | 1965 | 1813 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | CDS | 2094 | 2315 | 2094 | ID=Msa1354050-mRNA-1:cds;Parent=Msa1354050-mRNA-1 |
| tig0014199 | three_prime_UTR | 2316 | 2554 | 2316 | ID=Msa1354050-mRNA-1:three_prime_utr;Parent=Msa1354050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
