AlfalfaGEDB | Msa0575900

M. sativa cultivar zhongmu-4 / Msa0575900

KEGG: -
GO: -
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575900	XP_003631131.2	97.070	1092	30	1	1	1092	1	1090	0.0	2164

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575900	sp\|Q6P4K6\|S11IP_XENTR	29.825	342	221	10	10	343	10	340	2.15e-23	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575900	G7LE75	97.070	1092	30	1	1	1092	1	1090	0.0	2164

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0082290	Msa0575900	0.800715	1.265553e-48	-8.615850e-47
Msa0575900	Msa0902090	0.824846	6.468862e-54	-8.615850e-47
Msa0575900	Msa1085520	0.878491	2.689589e-69	-8.615850e-47
Msa0575900	Msa1434670	0.942753	4.109781e-102	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575900	MtrunA17_Chr8g0393181	97.070	1092	30	1	1	1092	1	1090	0.0	2164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575900	AT1G48540.1	48.401	1126	478	21	1	1089	1	1060	0.0	936
Msa0575900	AT1G48540.2	47.957	1126	471	20	1	1089	1	1048	0.0	928
Msa0575900	AT1G48540.3	49.715	1052	446	18	1	1015	1	1006	0.0	917
Msa0575900	AT3G17920.1	67.364	478	154	2	1	477	1	477	0.0	653
Msa0575900	AT3G17920.1	36.617	538	285	12	571	1089	505	1005	1.61e-73	264
Msa0575900	AT3G17920.2	60.350	343	134	2	136	477	6	347	1.90e-131	421
Msa0575900	AT3G17920.2	36.617	538	285	12	571	1089	375	875	7.19e-74	263
Msa0575900	AT3G17920.3	59.459	296	118	2	183	477	1	295	4.04e-107	355
Msa0575900	AT3G17920.3	36.617	538	285	12	571	1089	323	823	2.71e-74	263

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Find 257 sgRNAs with CRISPR-Local

Find 667 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCAAGAAAGACAAAG+GGG	0.707749	4_1:-79879967	None:intergenic
AAAATTGGAAATAATATTGT+AGG	0.411948	4_1:-79881687	None:intergenic
AAACTTCAAAAGGTTATCTT+TGG	0.256257	4_1:-79888619	None:intergenic
AAAGGGGTGGGATCCCTAAC+GGG	0.463715	4_1:-79879951	None:intergenic
AAATTGAAGCATTTGGACCT+CGG	0.564924	4_1:+79880380	Msa0575900:CDS
AAATTTCCTCTACCAAGTTA+TGG	0.434645	4_1:-79883204	None:intergenic
AACACTTGCTCCCTTCACCC+AGG	0.649406	4_1:+79880418	Msa0575900:CDS
AACCTTGTAACTGTCAGCCA+TGG	0.596255	4_1:+79888552	Msa0575900:CDS
AACTGTCAGCCATGGAAACA+CGG	0.595606	4_1:+79888560	Msa0575900:CDS
AAGGATGAGGCTATAGTGGA+AGG	0.608397	4_1:+79882230	Msa0575900:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATTGATCGATACGTGTA+CGG	-	chr4_1:79879575-79879594	None:intergenic	30.0%
TTATTGTATAGGATGCTCTT+CGG	+	chr4_1:79880171-79880190	Msa0575900:intron	30.0%
CACAAGATACGAATGATAAT+CGG	-	chr4_1:79880247-79880266	None:intergenic	30.0%
AGGAAAAATCTAAATCCAGA+CGG	-	chr4_1:79880559-79880578	None:intergenic	30.0%
AATAGTATACTCAATGAAGG+TGG	-	chr4_1:79880586-79880605	None:intergenic	30.0%
AACTAGTTATATTTGACGGA+TGG	+	chr4_1:79880705-79880724	Msa0575900:intron	30.0%
TAGTCTAAATGCTCACAATA+TGG	+	chr4_1:79880975-79880994	Msa0575900:intron	30.0%
TAATTCGATTCTTGCAGAAT+TGG	+	chr4_1:79881012-79881031	Msa0575900:intron	30.0%
TCAGCACAAGTTGTAAATAT+AGG	+	chr4_1:79881036-79881055	Msa0575900:intron	30.0%
GGTGAAATTAATGAAACTTG+GGG	-	chr4_1:79881254-79881273	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	79879420	79889015	79879420	ID=Msa0575900;Name=Msa0575900
chr4_1	mRNA	79879420	79889015	79879420	ID=Msa0575900-mRNA-1;Parent=Msa0575900;Name=Msa0575900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=218\|1\|1\|1\|0.90\|0.83\|12\|305\|1092
chr4_1	exon	79879420	79879522	79879420	ID=Msa0575900-mRNA-1:exon:28513;Parent=Msa0575900-mRNA-1
chr4_1	exon	79879545	79880100	79879545	ID=Msa0575900-mRNA-1:exon:28514;Parent=Msa0575900-mRNA-1
chr4_1	exon	79880182	79880439	79880182	ID=Msa0575900-mRNA-1:exon:28515;Parent=Msa0575900-mRNA-1
chr4_1	exon	79881590	79881832	79881590	ID=Msa0575900-mRNA-1:exon:28516;Parent=Msa0575900-mRNA-1
chr4_1	exon	79882122	79882268	79882122	ID=Msa0575900-mRNA-1:exon:28517;Parent=Msa0575900-mRNA-1
chr4_1	exon	79882473	79883875	79882473	ID=Msa0575900-mRNA-1:exon:28518;Parent=Msa0575900-mRNA-1
chr4_1	exon	79885542	79885615	79885542	ID=Msa0575900-mRNA-1:exon:28519;Parent=Msa0575900-mRNA-1
chr4_1	exon	79886567	79886648	79886567	ID=Msa0575900-mRNA-1:exon:28520;Parent=Msa0575900-mRNA-1
chr4_1	exon	79886722	79886847	79886722	ID=Msa0575900-mRNA-1:exon:28521;Parent=Msa0575900-mRNA-1
chr4_1	exon	79887062	79887168	79887062	ID=Msa0575900-mRNA-1:exon:28522;Parent=Msa0575900-mRNA-1
chr4_1	exon	79887577	79887734	79887577	ID=Msa0575900-mRNA-1:exon:28523;Parent=Msa0575900-mRNA-1
chr4_1	exon	79888471	79889015	79888471	ID=Msa0575900-mRNA-1:exon:28524;Parent=Msa0575900-mRNA-1
chr4_1	five_prime_UTR	79879420	79879522	79879420	ID=Msa0575900-mRNA-1:five_prime_utr;Parent=Msa0575900-mRNA-1
chr4_1	five_prime_UTR	79879545	79879659	79879545	ID=Msa0575900-mRNA-1:five_prime_utr;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79879660	79880100	79879660	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79880182	79880439	79880182	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79881590	79881832	79881590	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79882122	79882268	79882122	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79882473	79883875	79882473	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79885542	79885615	79885542	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79886567	79886648	79886567	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79886722	79886847	79886722	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79887062	79887168	79887062	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79887577	79887734	79887577	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	CDS	79888471	79888710	79888471	ID=Msa0575900-mRNA-1:cds;Parent=Msa0575900-mRNA-1
chr4_1	three_prime_UTR	79888711	79889015	79888711	ID=Msa0575900-mRNA-1:three_prime_utr;Parent=Msa0575900-mRNA-1

Gene Sequence

>Msa0575900

ATGGCGATTGTGACCGGAGATCGTTATCTGGAGAAGCTTGTCAAGTTCGTCGAAGATCAGGCGGGTCCTCTCATCGAAGGATCCTTCGTCTTGAAGCTAAATCCAGCCGGCCTTCACTACGTCCAATCAAGGCTCGAATCCCTTCACGAGCTTGAGAGTCTCCTCCTCGGTGCCCCCGTCGATTACCTTCGTGCCTACGTCTCCGACCTCGGTGATCACCGCGCACTCGAGCAACTCCGTAGGATCCTTCGTCTTCTCACTTCCCTCAAGGTTGTTTCTGTCTTGCAACCTCCCGTTAGGGATCCCACCCCTTTGTCTTTCTTGCCTTTTGGGAGGTTGAAGGTTCTTGAGCTCAGAGGTTGTGACCTCTCTACTTCCGCCGCCAAAGGATTGCTCGACCTCAGGCATACTCTCGAGAAGATTATTTGTCACAATTCTACTGATGCTCTTCGGCATGTATTTGCTAGCAGAATAACCGAGATAAAAGATTCTCCCCAATGGAACCGATTATCATTCGTATCTTGTGCATGCAATGGTTTGGTTCTCATGGATGAGTCTTTGCATCTTCTCCCTTCTGTCGAAACCCTTGATCTTAGCAGGAACAAGTTTGCAAAGCTTGATAATCTCAAACACTGTACCAAATTGAAGCATTTGGACCTCGGTTTCAATCACCTCAGAACACTTGCTCCCTTCACCCAGGTTTCTTGTCATATTGTTAAACTTGTTTTGAGGAACAATGCTCTAACTACTCTGCGAGGGATTGAGAATTTGAAGTCACTTGAAGGACTTGATGTTTCCTACAATATTATTTCCAATTTTTCAGAGCTAGAGTTTCTTGTGGGTCTTCTGAATCTAAAAAGCTTGTGGATGGAAGGAAATCCTTTATGTTGTGCCCGATGGTATAGGGCACAAGTATTCAGTTTCTTCGCCTACCCAGAAAAGTTGAAGTTAGATGAGAAGGAAATTAACGCTACGGATTTTTGGAAGAGACAAATAATTATTGCCAGTATGCATAAGCAACCTGCCAGTTTTGGGATTTATGTACCTGCCAAGGATGAGGCTATAGTGGAAGGTGGCAATAATAGAAGGAGAAAGGTCTGTCGTGTTGCTAGCATCGAGAGTGAAGAAGAGATCACTAGTATATGTTCTGATCAGGAATCTCAGTCATGCGTGAATGAAATTCAAAATAACGAGGATCCTGATTTATTTGATGACGAAGCTGAAATAGATGATTTGATTAATAAAGTGGAACATATGAAGAAAGAGCGTTCTATTCTTTGGTTGCGGGAATTTAGAGACTGGATGAATATTTCTTCTGAAAAATCAGTAGAAACTTGGAAAAAAGGAAGAGGTACATCACATCATCAGAAAGAAAATTTACCCAGAAACCATACAAATAAGGAGCAACATGGTGAAGTCTCAAGATATGCATCAGATTCTGTTCTAGCTTCAGGAGATGAAAGTAGTATGAATATTTTAGAATCTGATAGTTCTTTTGCAGATATGTCTGCTTGGTTTCGTAGACAGCAATACTTTGATTACAGAGGATCTCTTGGTAATGCTAGTGGGGCCTCTCTTTCTGACTCAGGGGGAGTGGATGTGGAGCGTTTCAAATCCTTTTCACTTCAGGGAATTAATAGTTCCCCCTCACAATCTAAAAATTCTCATTCCGACACCGTTGCCCCCCAAGGAGCACATAGAATGACTGGAAATGTCAACACCTCACCATTGACCACTATTGATGATATAAATGGGTCTCAGTCATCATCTACATGTCCCACATCCCCTCCTCACTTTCAAAAAGACCTTCTTCATCGCCGCCATAACTTGGTAGAGGAAATTTTGCAGTTGTCAGCTGATTCCTTTTCAGTGGCGTCTTCTGATAGTAACACAAGCTGTAGTGATGTTGATTGCAGTGAATTTGAACCATCAGTTCCCATAGTCGATTGTCACCCATATAAAAATCACGTGAATGGGAGTGTCGATGGACTTATATCTCCAAATCAACATGAGGAAAATATTTGCAGCCCAAGACAAGGAAGTATTCATGCAGGACAAAATGGCATTTGTTTATTTGGTTCATCTAGTGACCAAACTTCTAAGCAGGGTTCAATTGATTTTGCTGCTGGTGCCGGTGATGATGACAGTTCACTTTCTGCTAGCCAACAAACTGATTTTTTCGGGAAAAAGAAAATCAGAAAGAAAGCCAAGAAGAGAGTTATTTCAATATTAGAAGAGAATGCAAACATCAATTCAGGTGCTCATGAACAAGAGCAGATAAATCAAGGACAGATTACAGCAAATTTAAGGCAAGAATCAGCTGTTGATGATTTCGCTGAATTTTGTTGGCGTAATTGCTCTACCCAAGAGAATGATGATTTTATCGTGACATATTTCAATTCAAATATTGCCGACTCTGAAGCCAATGAAGGCTGTAATCATTATATACGCTGCAATTCCATCCTTCAGATGGAGACAAACTACAAAGAAAGAGAAGTTGCAGTATTACTGAGCAGCCTTAAGAAGCTCTATGTGCTGCTAATTAATGTTGCTTCTGATGGATCAGGGGAACTTTTGAGCGTATTGAGTTGCCACAAGATGGAAGAAGCTCGGGAGGTGCTTGTTGGAATGGGACTTCAGGTTTTAAGGGTAAATTTCGAGGGTGGGGAAACATACCTTTTTGTAACAAGAAGCATTGAAATGTCAAGAGAGTTACTATGTACCATACAAGTGTTTGATTCATGTGGTGGAAATTCTAGATGCTCAATAAGAAGTTTGGAGCAGGTCCAGGTTGAGTTGTTTGGCAACCAAATATGCGGTGGTTCAAATGTCAGCATATATCAGTATGCAATGGTACTTGTCTGTTGTAATCATGGCAATGAAGAATCATGGCTCTCAAGATCGCTGTTTGTGATCGGAGGTTATGTGCTTTTATGCATCGAAGACATCAAGCAACTGTATTCATTTTCATCAGATGCCTCTGTGTCTCCATATTACAGAATCGATTCATGTTGCTCAATTGCTGACATTACTGAGATGGTGATTGTGGCTGGTGACAGCTGCTGTGTTACTTTAGGTCTGAAATGTTCATTGACAGAATTTTATCCTTCTACCCAATTGAACCTTGTAACTGTCAGCCATGGAAACACGGCCCCAGGCTCTCTGAAATTGAAGCTTCGGTGGTTCTCCAAAGATAACCTTTTGAAGTTTGTGTCTTTGCTGAAGGCATTCCATGCAGAAAAAGTGGCGTCGCCTTTGGTAGTAAGATGTTCATCGTAA

Protein sequence

>Msa0575900

MAIVTGDRYLEKLVKFVEDQAGPLIEGSFVLKLNPAGLHYVQSRLESLHELESLLLGAPVDYLRAYVSDLGDHRALEQLRRILRLLTSLKVVSVLQPPVRDPTPLSFLPFGRLKVLELRGCDLSTSAAKGLLDLRHTLEKIICHNSTDALRHVFASRITEIKDSPQWNRLSFVSCACNGLVLMDESLHLLPSVETLDLSRNKFAKLDNLKHCTKLKHLDLGFNHLRTLAPFTQVSCHIVKLVLRNNALTTLRGIENLKSLEGLDVSYNIISNFSELEFLVGLLNLKSLWMEGNPLCCARWYRAQVFSFFAYPEKLKLDEKEINATDFWKRQIIIASMHKQPASFGIYVPAKDEAIVEGGNNRRRKVCRVASIESEEEITSICSDQESQSCVNEIQNNEDPDLFDDEAEIDDLINKVEHMKKERSILWLREFRDWMNISSEKSVETWKKGRGTSHHQKENLPRNHTNKEQHGEVSRYASDSVLASGDESSMNILESDSSFADMSAWFRRQQYFDYRGSLGNASGASLSDSGGVDVERFKSFSLQGINSSPSQSKNSHSDTVAPQGAHRMTGNVNTSPLTTIDDINGSQSSSTCPTSPPHFQKDLLHRRHNLVEEILQLSADSFSVASSDSNTSCSDVDCSEFEPSVPIVDCHPYKNHVNGSVDGLISPNQHEENICSPRQGSIHAGQNGICLFGSSSDQTSKQGSIDFAAGAGDDDSSLSASQQTDFFGKKKIRKKAKKRVISILEENANINSGAHEQEQINQGQITANLRQESAVDDFAEFCWRNCSTQENDDFIVTYFNSNIADSEANEGCNHYIRCNSILQMETNYKEREVAVLLSSLKKLYVLLINVASDGSGELLSVLSCHKMEEAREVLVGMGLQVLRVNFEGGETYLFVTRSIEMSRELLCTIQVFDSCGGNSRCSIRSLEQVQVELFGNQICGGSNVSIYQYAMVLVCCNHGNEESWLSRSLFVIGGYVLLCIEDIKQLYSFSSDASVSPYYRIDSCCSIADITEMVIVAGDSCCVTLGLKCSLTEFYPSTQLNLVTVSHGNTAPGSLKLKLRWFSKDNLLKFVSLLKAFHAEKVASPLVVRCSS*