Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902090 | KEH23622.1 | 90.554 | 307 | 4 | 1 | 1 | 282 | 811 | 1117 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902090 | sp|Q84M24|AB1A_ARATH | 70.358 | 307 | 66 | 1 | 1 | 282 | 986 | 1292 | 1.17e-136 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902090 | A0A072U1Q2 | 90.554 | 307 | 4 | 1 | 1 | 282 | 811 | 1117 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693880 | Msa0902090 | 0.814481 | 1.507455e-51 | -8.615850e-47 |
| Msa0503780 | Msa0902090 | 0.805618 | 1.223768e-49 | -8.615850e-47 |
| Msa0575900 | Msa0902090 | 0.824846 | 6.468862e-54 | -8.615850e-47 |
| Msa0902090 | Msa1041720 | 0.865532 | 5.517708e-65 | -8.615850e-47 |
| Msa0902090 | Msa1074210 | 0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0902090 | Msa1085520 | 0.808866 | 2.509004e-50 | -8.615850e-47 |
| Msa0902090 | Msa1114680 | 0.845324 | 4.361393e-59 | -8.615850e-47 |
| Msa0902090 | Msa1129540 | 0.811079 | 8.375298e-51 | -8.615850e-47 |
| Msa0902090 | Msa1145520 | 0.802076 | 6.660255e-49 | -8.615850e-47 |
| Msa0902090 | Msa1149470 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0902090 | Msa1172980 | 0.803945 | 2.735412e-49 | -8.615850e-47 |
| Msa0902090 | Msa1268230 | 0.885170 | 1.023856e-71 | -8.615850e-47 |
| Msa0902090 | Msa1328240 | 0.825544 | 4.424667e-54 | -8.615850e-47 |
| Msa0902090 | Msa1434670 | 0.806282 | 8.874245e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902090 | MtrunA17_Chr7g0257341 | 90.554 | 307 | 4 | 1 | 1 | 282 | 993 | 1299 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0902090 | AT2G41700.1 | 70.358 | 307 | 66 | 1 | 1 | 282 | 986 | 1292 | 1.18e-137 | 427 |
| Msa0902090 | AT2G41700.2 | 69.281 | 306 | 67 | 3 | 1 | 279 | 906 | 1211 | 2.55e-130 | 407 |
Find 61 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATTGGTCTTCTATTTC+TGG | 0.039182 | 6_1:+99854811 | Msa0902090:CDS |
| ACTGGATCTCTACATTTATT+TGG | 0.070382 | 6_1:+99857302 | Msa0902090:CDS |
| CCCGCTATCTTCTTGTTTAT+TGG | 0.118706 | 6_1:+99854797 | Msa0902090:CDS |
| ACCAACAATTATCATGCTTT+TGG | 0.231385 | 6_1:+99857753 | Msa0902090:CDS |
| CTTTATCAATTTGATGAATT+CGG | 0.290224 | 6_1:+99855795 | Msa0902090:CDS |
| TGATGAATTCGGCAATTCTT+AGG | 0.297316 | 6_1:+99855806 | Msa0902090:CDS |
| CGAATTCATCAAATTGATAA+AGG | 0.304095 | 6_1:-99855794 | None:intergenic |
| CTGGATCTCTACATTTATTT+GGG | 0.320849 | 6_1:+99857303 | Msa0902090:CDS |
| AGGTTTCTGTCCTTTCATAC+TGG | 0.348541 | 6_1:+99857284 | Msa0902090:intron |
| AAAGATAGGTTAAACGGAAT+TGG | 0.349118 | 6_1:-99854920 | None:intergenic |
| ATTTGCTGTTTCAATTGTTA+AGG | 0.361826 | 6_1:+99856575 | Msa0902090:CDS |
| GGAAGCAGCAGGGCCAGCTT+TGG | 0.372237 | 6_1:+99855191 | Msa0902090:CDS |
| GAAGCAGCAGGGCCAGCTTT+GGG | 0.392704 | 6_1:+99855192 | Msa0902090:CDS |
| GCAAAACATTAGCTTGAGTA+AGG | 0.397762 | 6_1:-99858075 | None:intergenic |
| TTAATGAATCCTACCAATCT+AGG | 0.407683 | 6_1:+99855256 | Msa0902090:CDS |
| TCCAAAAGCATGATAATTGT+TGG | 0.408481 | 6_1:-99857754 | None:intergenic |
| AAGTGCTGGCTTTGTGTCAT+TGG | 0.410904 | 6_1:-99855880 | None:intergenic |
| CTTCAGCAATTGGAAAAGAT+AGG | 0.419701 | 6_1:-99854934 | None:intergenic |
| TGACGAACCTCTTCAGCAAT+TGG | 0.433557 | 6_1:-99854944 | None:intergenic |
| CAGAACACCGATGGAAGTTT+AGG | 0.443850 | 6_1:+99855727 | Msa0902090:CDS |
| ATTGGAAAAGATAGGTTAAA+CGG | 0.444116 | 6_1:-99854926 | None:intergenic |
| TGGCTTTGTGTCATTGGTAG+AGG | 0.476901 | 6_1:-99855874 | None:intergenic |
| AGAGTCAGTGAAATCTGATC+AGG | 0.486449 | 6_1:-99854848 | None:intergenic |
| GCTGATGCAGTGGAAGCAGC+AGG | 0.487751 | 6_1:+99855180 | Msa0902090:CDS |
| AGAACAATGGCAAAAGAGGC+AGG | 0.490973 | 6_1:-99857346 | None:intergenic |
| ATACCCCACTGATTAGTTGT+TGG | 0.491193 | 6_1:-99857178 | None:intergenic |
| ATAGGTCTAGATCAGTTTGT+TGG | 0.497955 | 6_1:+99857715 | Msa0902090:intron |
| AGTAGAGCAGGTCCCAAAGC+TGG | 0.514476 | 6_1:-99855204 | None:intergenic |
| AAAGAGAACAATGGCAAAAG+AGG | 0.518399 | 6_1:-99857350 | None:intergenic |
| TTAATCCTCTATTGAGCGGT+GGG | 0.519064 | 6_1:+99854885 | Msa0902090:CDS |
| TCACTCATGTTAAGTAGAGC+AGG | 0.526772 | 6_1:-99855216 | None:intergenic |
| TAGCAGCAGAGAAGGCATCC+AGG | 0.528980 | 6_1:-99856515 | None:intergenic |
| GGCTTTGTGTCATTGGTAGA+GGG | 0.529222 | 6_1:-99855873 | None:intergenic |
| AATCCTCTATTGAGCGGTGG+GGG | 0.532615 | 6_1:+99854887 | Msa0902090:CDS |
| ATACATGGCGTTGTAAGTGC+TGG | 0.533216 | 6_1:-99855894 | None:intergenic |
| TTCATCAAATTGATAAAGGT+GGG | 0.533324 | 6_1:-99855790 | None:intergenic |
| CCAATAAACAAGAAGATAGC+GGG | 0.535755 | 6_1:-99854797 | None:intergenic |
| GACAATGATAGCAGCAGAGA+AGG | 0.536158 | 6_1:-99856523 | None:intergenic |
| ACCAATAAACAAGAAGATAG+CGG | 0.541580 | 6_1:-99854798 | None:intergenic |
| GGTCTAGATCAGTTTGTTGG+AGG | 0.543784 | 6_1:+99857718 | Msa0902090:intron |
| ATTCATCAAATTGATAAAGG+TGG | 0.545680 | 6_1:-99855791 | None:intergenic |
| ATGTAGAGATCCAGTATGAA+AGG | 0.549900 | 6_1:-99857294 | None:intergenic |
| GTAATACCTGTGCCACGGTA+TGG | 0.551272 | 6_1:-99857831 | None:intergenic |
| TTTAATCCTCTATTGAGCGG+TGG | 0.552799 | 6_1:+99854884 | Msa0902090:CDS |
| TAATCCTCTATTGAGCGGTG+GGG | 0.556425 | 6_1:+99854886 | Msa0902090:CDS |
| AGCACCAACAACTAATCAGT+GGG | 0.558188 | 6_1:+99857174 | Msa0902090:CDS |
| CAGGTATGGGGCAATTGTGA+TGG | 0.578895 | 6_1:+99855699 | Msa0902090:intron |
| ATTGAAACAGCAAATGAAGC+GGG | 0.582880 | 6_1:-99856567 | None:intergenic |
| CAAAACATTAGCTTGAGTAA+GGG | 0.587981 | 6_1:-99858074 | None:intergenic |
| AAAGGCATTAGCTGATGCAG+TGG | 0.608845 | 6_1:+99855170 | Msa0902090:intron |
| AGTGAAATCTGATCAGGATG+CGG | 0.619343 | 6_1:-99854842 | None:intergenic |
| AGTGTAGCCTAAACTTCCAT+CGG | 0.621377 | 6_1:-99855734 | None:intergenic |
| TGAAGCGGGAATGAAAGAGA+AGG | 0.628980 | 6_1:-99856553 | None:intergenic |
| TTTGTGTCATTGGTAGAGGG+TGG | 0.637203 | 6_1:-99855870 | None:intergenic |
| CTGATGCAGTGGAAGCAGCA+GGG | 0.641805 | 6_1:+99855181 | Msa0902090:CDS |
| ATGGATGATCAGAACACCGA+TGG | 0.642489 | 6_1:+99855718 | Msa0902090:CDS |
| AAGCACCAACAACTAATCAG+TGG | 0.654887 | 6_1:+99857173 | Msa0902090:CDS |
| AATTGAAACAGCAAATGAAG+CGG | 0.655711 | 6_1:-99856568 | None:intergenic |
| AAAGATGTAAAAGAGAACAA+TGG | 0.673478 | 6_1:-99857359 | None:intergenic |
| AGTCCGTAATACCTGTGCCA+CGG | 0.684613 | 6_1:-99857836 | None:intergenic |
| GCACCAACAACTAATCAGTG+GGG | 0.764779 | 6_1:+99857175 | Msa0902090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAATTATTAGCATA+TGG | + | chr6_1:99855335-99855354 | Msa0902090:intron | 10.0% |
| !! | ACTAGTAATATAATAAAATC+AGG | - | chr6_1:99855597-99855616 | None:intergenic | 15.0% |
| !! | AAATCAATAGTGATATAATA+AGG | - | chr6_1:99856003-99856022 | None:intergenic | 15.0% |
| !! | AATATTTATAAACTCTTGAT+TGG | + | chr6_1:99857127-99857146 | Msa0902090:intron | 15.0% |
| !! | TTAGATATATATTCAAAATG+AGG | - | chr6_1:99857247-99857266 | None:intergenic | 15.0% |
| !! | TGGAATTTCTATTATTATGA+AGG | + | chr6_1:99855078-99855097 | Msa0902090:intron | 20.0% |
| !!! | ATACTGCTATTTTTATCAAT+TGG | + | chr6_1:99855387-99855406 | Msa0902090:intron | 20.0% |
| !! | TTCTGATGTATTATTATAGA+AGG | + | chr6_1:99855476-99855495 | Msa0902090:intron | 20.0% |
| !! | CTTTATCAATTTGATGAATT+CGG | + | chr6_1:99855795-99855814 | Msa0902090:CDS | 20.0% |
| !! | AAAAAAAATGTTAGCATACA+TGG | - | chr6_1:99855912-99855931 | None:intergenic | 20.0% |
| !! | GAATCTCAAAGTATAAAATA+AGG | - | chr6_1:99855969-99855988 | None:intergenic | 20.0% |
| !! | CATAAAGTATAGACAAATAT+GGG | - | chr6_1:99856230-99856249 | None:intergenic | 20.0% |
| !! | ACATAAAGTATAGACAAATA+TGG | - | chr6_1:99856231-99856250 | None:intergenic | 20.0% |
| !! | TAAAATATGCATTGAGAATT+CGG | - | chr6_1:99856379-99856398 | None:intergenic | 20.0% |
| !! | AACATATAAATGACGAAATA+AGG | + | chr6_1:99856398-99856417 | Msa0902090:intron | 20.0% |
| !! | AGTCTTGATATAAAAAAATG+TGG | - | chr6_1:99856832-99856851 | None:intergenic | 20.0% |
| !! | ATATAGACATCTTAAAGTAA+GGG | - | chr6_1:99857014-99857033 | None:intergenic | 20.0% |
| !! | AATATAGACATCTTAAAGTA+AGG | - | chr6_1:99857015-99857034 | None:intergenic | 20.0% |
| !! | AGTTTATAAATATTTAGCCT+AGG | - | chr6_1:99857121-99857140 | None:intergenic | 20.0% |
| !! | TTTGAATATATATCTAATGC+TGG | + | chr6_1:99857250-99857269 | Msa0902090:intron | 20.0% |
| !!! | TTTTACTGATTGTTGTAAAT+TGG | + | chr6_1:99857400-99857419 | Msa0902090:intron | 20.0% |
| !! | AATTATATTCAGCATTAACA+AGG | + | chr6_1:99857449-99857468 | Msa0902090:intron | 20.0% |
| !! | GTAAAACAAAATCCATTAAA+AGG | - | chr6_1:99857650-99857669 | None:intergenic | 20.0% |
| !!! | TTATTTTTCACATGTGTTAT+AGG | + | chr6_1:99858038-99858057 | Msa0902090:intron | 20.0% |
| !!! | TATTTTAATCCTCTATTGAG+CGG | + | chr6_1:99854881-99854900 | Msa0902090:CDS | 25.0% |
| ! | ATTGGAAAAGATAGGTTAAA+CGG | - | chr6_1:99854929-99854948 | None:intergenic | 25.0% |
| ! | TTTATCAATTGGATCCATAT+TGG | + | chr6_1:99855398-99855417 | Msa0902090:intron | 25.0% |
| !!! | ATATTTTAATCTCATCCTCA+TGG | - | chr6_1:99855435-99855454 | None:intergenic | 25.0% |
| ! | TTCATCAAATTGATAAAGGT+GGG | - | chr6_1:99855793-99855812 | None:intergenic | 25.0% |
| ! | ATTCATCAAATTGATAAAGG+TGG | - | chr6_1:99855794-99855813 | None:intergenic | 25.0% |
| ! | CGAATTCATCAAATTGATAA+AGG | - | chr6_1:99855797-99855816 | None:intergenic | 25.0% |
| !!! | TCAAAATTCTAAAATCGCAT+CGG | + | chr6_1:99856104-99856123 | Msa0902090:intron | 25.0% |
| ! | TATAACAAAACACTGATACA+AGG | - | chr6_1:99856431-99856450 | None:intergenic | 25.0% |
| !!! | TGTATCAGTGTTTTGTTATA+TGG | + | chr6_1:99856431-99856450 | Msa0902090:intron | 25.0% |
| !!! | ATTTGCTGTTTCAATTGTTA+AGG | + | chr6_1:99856575-99856594 | Msa0902090:CDS | 25.0% |
| ! | TCTCATTTGTAAACTTCTAT+AGG | - | chr6_1:99856653-99856672 | None:intergenic | 25.0% |
| !! | ATTTGCACCTTTTCTATTTA+GGG | + | chr6_1:99856738-99856757 | Msa0902090:intron | 25.0% |
| ! | GAAACATCAGATACATTTAT+GGG | + | chr6_1:99856760-99856779 | Msa0902090:intron | 25.0% |
| ! | AAACATCAGATACATTTATG+GGG | + | chr6_1:99856761-99856780 | Msa0902090:intron | 25.0% |
| ! | TGACATAAAAAAACAGTAGA+AGG | - | chr6_1:99856797-99856816 | None:intergenic | 25.0% |
| !! | CAGGTTTAAGTTATAATAGA+AGG | - | chr6_1:99856905-99856924 | None:intergenic | 25.0% |
| !!! | TCTGATAATGTCATTAGTTT+TGG | - | chr6_1:99857088-99857107 | None:intergenic | 25.0% |
| ! | AAAGATGTAAAAGAGAACAA+TGG | - | chr6_1:99857362-99857381 | None:intergenic | 25.0% |
| !! | ATTGTTCTCTTTTACATCTT+TGG | + | chr6_1:99857361-99857380 | Msa0902090:CDS | 25.0% |
| ! | ACAGACTATGATAAACTTAA+CGG | - | chr6_1:99857476-99857495 | None:intergenic | 25.0% |
| ! | AAACAACATGAAAAAGAAAG+AGG | - | chr6_1:99857527-99857546 | None:intergenic | 25.0% |
| ! | AACCACTTAAGAAAAACTAT+GGG | - | chr6_1:99857553-99857572 | None:intergenic | 25.0% |
| !!! | ATTATCATGCTTTTGGAATA+CGG | + | chr6_1:99857760-99857779 | Msa0902090:CDS | 25.0% |
| ! | GGTCAAAAAAGAAAAATGTA+AGG | - | chr6_1:99857813-99857832 | None:intergenic | 25.0% |
| ! | AATGGTTATCTCATTCATTA+TGG | + | chr6_1:99857963-99857982 | Msa0902090:intron | 25.0% |
| ! | ATGGTTATCTCATTCATTAT+GGG | + | chr6_1:99857964-99857983 | Msa0902090:intron | 25.0% |
| ! | ACACATGTGAAAAATAACTT+TGG | - | chr6_1:99858035-99858054 | None:intergenic | 25.0% |
| ACCAATAAACAAGAAGATAG+CGG | - | chr6_1:99854801-99854820 | None:intergenic | 30.0% | |
| !! | GTTTATTGGTCTTCTATTTC+TGG | + | chr6_1:99854811-99854830 | Msa0902090:CDS | 30.0% |
| AAAGATAGGTTAAACGGAAT+TGG | - | chr6_1:99854923-99854942 | None:intergenic | 30.0% | |
| AAGGTAGCACAAAATGTTAA+AGG | + | chr6_1:99855097-99855116 | Msa0902090:intron | 30.0% | |
| ACAAATTCCCCAATTCAAAA+AGG | + | chr6_1:99855152-99855171 | Msa0902090:intron | 30.0% | |
| ! | AGCTAATGCCTTTTTGAATT+GGG | - | chr6_1:99855163-99855182 | None:intergenic | 30.0% |
| TTAATGAATCCTACCAATCT+AGG | + | chr6_1:99855256-99855275 | Msa0902090:CDS | 30.0% | |
| ATTGCTTGACAGTTAAAAGA+TGG | - | chr6_1:99855317-99855336 | None:intergenic | 30.0% | |
| AATTGGATCCATATTGGTAT+CGG | + | chr6_1:99855404-99855423 | Msa0902090:intron | 30.0% | |
| TCAGAAAGAGAGAGAAAAAA+TGG | - | chr6_1:99855462-99855481 | None:intergenic | 30.0% | |
| ! | AATCTACTCTTGTTTCCAAA+TGG | - | chr6_1:99855512-99855531 | None:intergenic | 30.0% |
| AAGAGTAGATTACAAAAGAG+AGG | + | chr6_1:99855521-99855540 | Msa0902090:intron | 30.0% | |
| CTACACTTGATAAACTAGTT+TGG | - | chr6_1:99855556-99855575 | None:intergenic | 30.0% | |
| !!! | TGTATTTTGATATGCAGGTA+TGG | + | chr6_1:99855685-99855704 | Msa0902090:intron | 30.0% |
| !!! | GTATTTTGATATGCAGGTAT+GGG | + | chr6_1:99855686-99855705 | Msa0902090:intron | 30.0% |
| !!! | TATTTTGATATGCAGGTATG+GGG | + | chr6_1:99855687-99855706 | Msa0902090:intron | 30.0% |
| ! | TCCAATAACATATCTAGGAT+AGG | - | chr6_1:99856132-99856151 | None:intergenic | 30.0% |
| AAAGTATAGACAAATATGGG+TGG | - | chr6_1:99856227-99856246 | None:intergenic | 30.0% | |
| !!! | TCATCTCTAATGTTAGCTTT+TGG | + | chr6_1:99856333-99856352 | Msa0902090:intron | 30.0% |
| !!! | CATCTCTAATGTTAGCTTTT+GGG | + | chr6_1:99856334-99856353 | Msa0902090:intron | 30.0% |
| AGCTGCATATGAAATATTGT+AGG | + | chr6_1:99856491-99856510 | Msa0902090:intron | 30.0% | |
| ATATGAAATATTGTAGGACC+TGG | + | chr6_1:99856497-99856516 | Msa0902090:intron | 30.0% | |
| AATTGAAACAGCAAATGAAG+CGG | - | chr6_1:99856571-99856590 | None:intergenic | 30.0% | |
| ! | TCCTTCATTTTCTTTGCAAA+AGG | + | chr6_1:99856699-99856718 | Msa0902090:intron | 30.0% |
| ! | CATTTGCACCTTTTCTATTT+AGG | + | chr6_1:99856737-99856756 | Msa0902090:intron | 30.0% |
| GATGTTTCCCTAAATAGAAA+AGG | - | chr6_1:99856748-99856767 | None:intergenic | 30.0% | |
| GGAAACATCAGATACATTTA+TGG | + | chr6_1:99856759-99856778 | Msa0902090:intron | 30.0% | |
| ACTGGATCTCTACATTTATT+TGG | + | chr6_1:99857302-99857321 | Msa0902090:CDS | 30.0% | |
| CTGGATCTCTACATTTATTT+GGG | + | chr6_1:99857303-99857322 | Msa0902090:CDS | 30.0% | |
| CAGACTATGATAAACTTAAC+GGG | - | chr6_1:99857475-99857494 | None:intergenic | 30.0% | |
| ACCACTTAAGAAAAACTATG+GGG | - | chr6_1:99857552-99857571 | None:intergenic | 30.0% | |
| CAACCACTTAAGAAAAACTA+TGG | - | chr6_1:99857554-99857573 | None:intergenic | 30.0% | |
| !! | TGGTTGATAAGATATATGAC+TGG | + | chr6_1:99857568-99857587 | Msa0902090:intron | 30.0% |
| CAAAATCCATTAAAAGGCTA+AGG | - | chr6_1:99857644-99857663 | None:intergenic | 30.0% | |
| TGCCTATTGAATACTGTTAT+AGG | + | chr6_1:99857697-99857716 | Msa0902090:intron | 30.0% | |
| GACCTATAACAGTATTCAAT+AGG | - | chr6_1:99857702-99857721 | None:intergenic | 30.0% | |
| ! | ACCAACAATTATCATGCTTT+TGG | + | chr6_1:99857753-99857772 | Msa0902090:CDS | 30.0% |
| ! | TCCAAAAGCATGATAATTGT+TGG | - | chr6_1:99857757-99857776 | None:intergenic | 30.0% |
| ! | TTTTTCTGGACTGATACTAA+TGG | + | chr6_1:99857945-99857964 | Msa0902090:intron | 30.0% |
| TGGTTATCTCATTCATTATG+GGG | + | chr6_1:99857965-99857984 | Msa0902090:intron | 30.0% | |
| AAAAGAATTGGCACTTATTG+TGG | - | chr6_1:99858001-99858020 | None:intergenic | 30.0% | |
| ! | AAGTGCCAATTCTTTTCTTA+AGG | + | chr6_1:99858005-99858024 | Msa0902090:intron | 30.0% |
| GTGTACCTTAAGAAAAGAAT+TGG | - | chr6_1:99858013-99858032 | None:intergenic | 30.0% | |
| CCAATAAACAAGAAGATAGC+GGG | - | chr6_1:99854800-99854819 | None:intergenic | 35.0% | |
| CTTCAGCAATTGGAAAAGAT+AGG | - | chr6_1:99854937-99854956 | None:intergenic | 35.0% | |
| ! | ATCTTTTCCAATTGCTGAAG+AGG | + | chr6_1:99854937-99854956 | Msa0902090:CDS | 35.0% |
| ! | AAGTCTAAGACTACAGAGAA+AGG | - | chr6_1:99855012-99855031 | None:intergenic | 35.0% |
| AATTCCATTAAAAGCCCATC+AGG | - | chr6_1:99855065-99855084 | None:intergenic | 35.0% | |
| GTAGCACAAAATGTTAAAGG+AGG | + | chr6_1:99855100-99855119 | Msa0902090:intron | 35.0% | |
| CACAAAATGTTAAAGGAGGT+TGG | + | chr6_1:99855104-99855123 | Msa0902090:intron | 35.0% | |
| TTAAAGGAGGTTGGATTCAA+AGG | + | chr6_1:99855113-99855132 | Msa0902090:intron | 35.0% | |
| ! | GCTAATGCCTTTTTGAATTG+GGG | - | chr6_1:99855162-99855181 | None:intergenic | 35.0% |
| ! | CAGCTAATGCCTTTTTGAAT+TGG | - | chr6_1:99855164-99855183 | None:intergenic | 35.0% |
| ! | ATTTTCACACCTAGATTGGT+AGG | - | chr6_1:99855268-99855287 | None:intergenic | 35.0% |
| ! | TCAGATTTTCACACCTAGAT+TGG | - | chr6_1:99855272-99855291 | None:intergenic | 35.0% |
| ATTGGATCCATATTGGTATC+GGG | + | chr6_1:99855405-99855424 | Msa0902090:intron | 35.0% | |
| !!! | TGCAGTGTATTTTGATATGC+AGG | + | chr6_1:99855680-99855699 | Msa0902090:intron | 35.0% |
| TGATGAATTCGGCAATTCTT+AGG | + | chr6_1:99855806-99855825 | Msa0902090:CDS | 35.0% | |
| GCCTATCCTAGATATGTTAT+TGG | + | chr6_1:99856128-99856147 | Msa0902090:intron | 35.0% | |
| TGACTAGACATATGACCAAA+TGG | + | chr6_1:99856286-99856305 | Msa0902090:intron | 35.0% | |
| GACTAGACATATGACCAAAT+GGG | + | chr6_1:99856287-99856306 | Msa0902090:intron | 35.0% | |
| !!! | TTAGCTTTTGGGATTGAGTT+AGG | + | chr6_1:99856345-99856364 | Msa0902090:intron | 35.0% |
| ATTGAAACAGCAAATGAAGC+GGG | - | chr6_1:99856570-99856589 | None:intergenic | 35.0% | |
| TGAACTTAAAAATGACGAGC+TGG | - | chr6_1:99856621-99856640 | None:intergenic | 35.0% | |
| ! | GCCTTTTGCAAAGAAAATGA+AGG | - | chr6_1:99856703-99856722 | None:intergenic | 35.0% |
| TTTATATCAAGACTGCTGAC+TGG | + | chr6_1:99856838-99856857 | Msa0902090:intron | 35.0% | |
| ! | TTATATCAAGACTGCTGACT+GGG | + | chr6_1:99856839-99856858 | Msa0902090:intron | 35.0% |
| TGCAATGACAAAAACTTGAG+TGG | - | chr6_1:99856951-99856970 | None:intergenic | 35.0% | |
| TATAAACTCTTGATTGGTGC+AGG | + | chr6_1:99857133-99857152 | Msa0902090:intron | 35.0% | |
| ATGTAGAGATCCAGTATGAA+AGG | - | chr6_1:99857297-99857316 | None:intergenic | 35.0% | |
| AAAGAGAACAATGGCAAAAG+AGG | - | chr6_1:99857353-99857372 | None:intergenic | 35.0% | |
| CCACTTAAGAAAAACTATGG+GGG | - | chr6_1:99857551-99857570 | None:intergenic | 35.0% | |
| ATAGGTCTAGATCAGTTTGT+TGG | + | chr6_1:99857715-99857734 | Msa0902090:intron | 35.0% | |
| !!! | TTTCTTTTTTGACCATACCG+TGG | + | chr6_1:99857819-99857838 | Msa0902090:CDS | 35.0% |
| GTATCAGTCCAGAAAAAAAG+TGG | - | chr6_1:99857942-99857961 | None:intergenic | 35.0% | |
| AATTGGCACTTATTGTGGAT+GGG | - | chr6_1:99857996-99858015 | None:intergenic | 35.0% | |
| TTTCACATGTGTTATAGGCA+TGG | + | chr6_1:99858043-99858062 | Msa0902090:intron | 35.0% | |
| ! | CCCGCTATCTTCTTGTTTAT+TGG | + | chr6_1:99854797-99854816 | Msa0902090:CDS | 40.0% |
| AGTGAAATCTGATCAGGATG+CGG | - | chr6_1:99854845-99854864 | None:intergenic | 40.0% | |
| AGAGTCAGTGAAATCTGATC+AGG | - | chr6_1:99854851-99854870 | None:intergenic | 40.0% | |
| TTTAATCCTCTATTGAGCGG+TGG | + | chr6_1:99854884-99854903 | Msa0902090:CDS | 40.0% | |
| TTAATCCTCTATTGAGCGGT+GGG | + | chr6_1:99854885-99854904 | Msa0902090:CDS | 40.0% | |
| ! | TGCTGCTTAAAAATGCACTC+CGG | + | chr6_1:99855034-99855053 | Msa0902090:intron | 40.0% |
| !!! | GTATCCTGATGGGCTTTTAA+TGG | + | chr6_1:99855058-99855077 | Msa0902090:intron | 40.0% |
| TCACTCATGTTAAGTAGAGC+AGG | - | chr6_1:99855219-99855238 | None:intergenic | 40.0% | |
| TTGGATCCATATTGGTATCG+GGG | + | chr6_1:99855406-99855425 | Msa0902090:intron | 40.0% | |
| ! | CTCTTGTTTCCAAATGGATC+TGG | - | chr6_1:99855506-99855525 | None:intergenic | 40.0% |
| AGTGTAGCCTAAACTTCCAT+CGG | - | chr6_1:99855737-99855756 | None:intergenic | 40.0% | |
| !! | AAAAGCTAGCTAGCTCTAGT+CGG | - | chr6_1:99856063-99856082 | None:intergenic | 40.0% |
| !!! | ACTAGAGCTAGCTAGCTTTT+GGG | + | chr6_1:99856063-99856082 | Msa0902090:intron | 40.0% |
| ! | TCTAGAGCATGGGCAAAAAT+GGG | - | chr6_1:99856158-99856177 | None:intergenic | 40.0% |
| ! | ATCTAGAGCATGGGCAAAAA+TGG | - | chr6_1:99856159-99856178 | None:intergenic | 40.0% |
| ! | CTATTGGACATCTAGAGCAT+GGG | - | chr6_1:99856168-99856187 | None:intergenic | 40.0% |
| ! | ACTATTGGACATCTAGAGCA+TGG | - | chr6_1:99856169-99856188 | None:intergenic | 40.0% |
| ATGTCCAATAGTGAGTGTGA+GGG | + | chr6_1:99856177-99856196 | Msa0902090:intron | 40.0% | |
| TCATATGTCTAGTCAACGTG+GGG | - | chr6_1:99856281-99856300 | None:intergenic | 40.0% | |
| GTCATATGTCTAGTCAACGT+GGG | - | chr6_1:99856282-99856301 | None:intergenic | 40.0% | |
| AAACCTTGCAAAGACCCATT+TGG | - | chr6_1:99856304-99856323 | None:intergenic | 40.0% | |
| TCAATAAAACAGTGGCAAGC+AGG | - | chr6_1:99856924-99856943 | None:intergenic | 40.0% | |
| !! | TGCTTGCCACTGTTTTATTG+AGG | + | chr6_1:99856923-99856942 | Msa0902090:intron | 40.0% |
| GTGGATCCTCAATAAAACAG+TGG | - | chr6_1:99856932-99856951 | None:intergenic | 40.0% | |
| AAGCACCAACAACTAATCAG+TGG | + | chr6_1:99857173-99857192 | Msa0902090:CDS | 40.0% | |
| AGCACCAACAACTAATCAGT+GGG | + | chr6_1:99857174-99857193 | Msa0902090:CDS | 40.0% | |
| ! | ATACCCCACTGATTAGTTGT+TGG | - | chr6_1:99857181-99857200 | None:intergenic | 40.0% |
| AGTATGAAAGGACAGAAACC+TGG | - | chr6_1:99857285-99857304 | None:intergenic | 40.0% | |
| AGGTTTCTGTCCTTTCATAC+TGG | + | chr6_1:99857284-99857303 | Msa0902090:intron | 40.0% | |
| ! | CCCCCATAGTTTTTCTTAAG+TGG | + | chr6_1:99857548-99857567 | Msa0902090:intron | 40.0% |
| ! | TAAGGCTTGGTTGTATTGTG+TGG | - | chr6_1:99857626-99857645 | None:intergenic | 40.0% |
| !! | ACCAAGCCTTAGCCTTTTAA+TGG | + | chr6_1:99857635-99857654 | Msa0902090:intron | 40.0% |
| TCCATTAAAAGGCTAAGGCT+TGG | - | chr6_1:99857639-99857658 | None:intergenic | 40.0% | |
| GAATTGGCACTTATTGTGGA+TGG | - | chr6_1:99857997-99858016 | None:intergenic | 40.0% | |
| TAATCCTCTATTGAGCGGTG+GGG | + | chr6_1:99854886-99854905 | Msa0902090:CDS | 45.0% | |
| TGACGAACCTCTTCAGCAAT+TGG | - | chr6_1:99854947-99854966 | None:intergenic | 45.0% | |
| AAAAGCCCATCAGGATACAC+CGG | - | chr6_1:99855056-99855075 | None:intergenic | 45.0% | |
| !! | AAAGGCATTAGCTGATGCAG+TGG | + | chr6_1:99855170-99855189 | Msa0902090:intron | 45.0% |
| GAAGGAGATCCAGATCCATT+TGG | + | chr6_1:99855494-99855513 | Msa0902090:intron | 45.0% | |
| ATGGATGATCAGAACACCGA+TGG | + | chr6_1:99855718-99855737 | Msa0902090:CDS | 45.0% | |
| CAGAACACCGATGGAAGTTT+AGG | + | chr6_1:99855727-99855746 | Msa0902090:CDS | 45.0% | |
| ! | TTTGTGTCATTGGTAGAGGG+TGG | - | chr6_1:99855873-99855892 | None:intergenic | 45.0% |
| ! | GGCTTTGTGTCATTGGTAGA+GGG | - | chr6_1:99855876-99855895 | None:intergenic | 45.0% |
| !! | TGGCTTTGTGTCATTGGTAG+AGG | - | chr6_1:99855877-99855896 | None:intergenic | 45.0% |
| !! | AAGTGCTGGCTTTGTGTCAT+TGG | - | chr6_1:99855883-99855902 | None:intergenic | 45.0% |
| ATACATGGCGTTGTAAGTGC+TGG | - | chr6_1:99855897-99855916 | None:intergenic | 45.0% | |
| !!! | GACTAGAGCTAGCTAGCTTT+TGG | + | chr6_1:99856062-99856081 | Msa0902090:intron | 45.0% |
| !!! | CTAGAGCTAGCTAGCTTTTG+GGG | + | chr6_1:99856064-99856083 | Msa0902090:intron | 45.0% |
| GGGGGTCCAATAACATATCT+AGG | - | chr6_1:99856137-99856156 | None:intergenic | 45.0% | |
| TAGAGCATGGGCAAAAATGG+GGG | - | chr6_1:99856156-99856175 | None:intergenic | 45.0% | |
| CTAGAGCATGGGCAAAAATG+GGG | - | chr6_1:99856157-99856176 | None:intergenic | 45.0% | |
| GATGTCCAATAGTGAGTGTG+AGG | + | chr6_1:99856176-99856195 | Msa0902090:intron | 45.0% | |
| TGTCCAATAGTGAGTGTGAG+GGG | + | chr6_1:99856178-99856197 | Msa0902090:intron | 45.0% | |
| TCAACACACATGCTCAGGAT+TGG | - | chr6_1:99856256-99856275 | None:intergenic | 45.0% | |
| GGTCATATGTCTAGTCAACG+TGG | - | chr6_1:99856283-99856302 | None:intergenic | 45.0% | |
| TGACCAAATGGGTCTTTGCA+AGG | + | chr6_1:99856298-99856317 | Msa0902090:intron | 45.0% | |
| GACAATGATAGCAGCAGAGA+AGG | - | chr6_1:99856526-99856545 | None:intergenic | 45.0% | |
| TGAAGCGGGAATGAAAGAGA+AGG | - | chr6_1:99856556-99856575 | None:intergenic | 45.0% | |
| GCACCAACAACTAATCAGTG+GGG | + | chr6_1:99857175-99857194 | Msa0902090:CDS | 45.0% | |
| !! | TAATGCTGGTCTTTCGAACC+AGG | + | chr6_1:99857264-99857283 | Msa0902090:intron | 45.0% |
| AGAACAATGGCAAAAGAGGC+AGG | - | chr6_1:99857349-99857368 | None:intergenic | 45.0% | |
| !! | GGTCTAGATCAGTTTGTTGG+AGG | + | chr6_1:99857718-99857737 | Msa0902090:intron | 45.0% |
| ATACCGTGGCACAGGTATTA+CGG | + | chr6_1:99857833-99857852 | Msa0902090:intron | 45.0% | |
| !! | TTGACTTGTCTGACAGAACG+TGG | + | chr6_1:99857906-99857925 | Msa0902090:intron | 45.0% |
| !!! | CTCCTGGTCCACTTTTTTTC+TGG | + | chr6_1:99857931-99857950 | Msa0902090:intron | 45.0% |
| GTCCAGAAAAAAAGTGGACC+AGG | - | chr6_1:99857936-99857955 | None:intergenic | 45.0% | |
| AATCCTCTATTGAGCGGTGG+GGG | + | chr6_1:99854887-99854906 | Msa0902090:CDS | 50.0% | |
| TGGATGCCCCGATACCAATA+TGG | - | chr6_1:99855415-99855434 | None:intergenic | 50.0% | |
| CAGGTATGGGGCAATTGTGA+TGG | + | chr6_1:99855699-99855718 | Msa0902090:intron | 50.0% | |
| AGAGCATGGGCAAAAATGGG+GGG | - | chr6_1:99856155-99856174 | None:intergenic | 50.0% | |
| GTCCAATAGTGAGTGTGAGG+GGG | + | chr6_1:99856179-99856198 | Msa0902090:intron | 50.0% | |
| GGGTTTCAACACACATGCTC+AGG | - | chr6_1:99856261-99856280 | None:intergenic | 50.0% | |
| TATCAGACTGCTAGTCGCCT+AGG | + | chr6_1:99857101-99857120 | Msa0902090:intron | 50.0% | |
| ! | TTTTGACCATACCGTGGCAC+AGG | + | chr6_1:99857825-99857844 | Msa0902090:CDS | 50.0% |
| GTAATACCTGTGCCACGGTA+TGG | - | chr6_1:99857834-99857853 | None:intergenic | 50.0% | |
| AGTCCGTAATACCTGTGCCA+CGG | - | chr6_1:99857839-99857858 | None:intergenic | 50.0% | |
| TGGCACTTATTGTGGATGGG+AGG | - | chr6_1:99857993-99858012 | None:intergenic | 50.0% | |
| TGCACTCCGGTGTATCCTGA+TGG | + | chr6_1:99855047-99855066 | Msa0902090:intron | 55.0% | |
| GCACTCCGGTGTATCCTGAT+GGG | + | chr6_1:99855048-99855067 | Msa0902090:intron | 55.0% | |
| CTGATGCAGTGGAAGCAGCA+GGG | + | chr6_1:99855181-99855200 | Msa0902090:CDS | 55.0% | |
| AGTAGAGCAGGTCCCAAAGC+TGG | - | chr6_1:99855207-99855226 | None:intergenic | 55.0% | |
| ! | TTGGTATCGGGGCATCCATG+AGG | + | chr6_1:99855417-99855436 | Msa0902090:intron | 55.0% |
| CACCCCCTCACACTCACTAT+TGG | - | chr6_1:99856184-99856203 | None:intergenic | 55.0% | |
| !! | TAGCAGCAGAGAAGGCATCC+AGG | - | chr6_1:99856518-99856537 | None:intergenic | 55.0% |
| GTGGCACAGGTATTACGGAC+TGG | + | chr6_1:99857838-99857857 | Msa0902090:intron | 55.0% | |
| CTGACAGAACGTGGTTCTCC+TGG | + | chr6_1:99857915-99857934 | Msa0902090:intron | 55.0% | |
| CTCTATTGAGCGGTGGGGGT+GGG | + | chr6_1:99854891-99854910 | Msa0902090:CDS | 60.0% | |
| TCTATTGAGCGGTGGGGGTG+GGG | + | chr6_1:99854892-99854911 | Msa0902090:CDS | 60.0% | |
| GCTGATGCAGTGGAAGCAGC+AGG | + | chr6_1:99855180-99855199 | Msa0902090:CDS | 60.0% | |
| GAAGCAGCAGGGCCAGCTTT+GGG | + | chr6_1:99855192-99855211 | Msa0902090:CDS | 60.0% | |
| CCACCCCCACCGCTCAATAG+AGG | - | chr6_1:99854893-99854912 | None:intergenic | 65.0% | |
| CCTCTATTGAGCGGTGGGGG+TGG | + | chr6_1:99854890-99854909 | Msa0902090:CDS | 65.0% | |
| CTATTGAGCGGTGGGGGTGG+GGG | + | chr6_1:99854893-99854912 | Msa0902090:CDS | 65.0% | |
| GGAAGCAGCAGGGCCAGCTT+TGG | + | chr6_1:99855191-99855210 | Msa0902090:CDS | 65.0% | |
| TTGAGCGGTGGGGGTGGGGG+TGG | + | chr6_1:99854896-99854915 | Msa0902090:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 99854791 | 99858089 | 99854791 | ID=Msa0902090;Name=Msa0902090 |
| chr6_1 | mRNA | 99854791 | 99858089 | 99854791 | ID=Msa0902090-mRNA-1;Parent=Msa0902090;Name=Msa0902090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.57|0.37|0.75|1|1|8|0|287 |
| chr6_1 | exon | 99854791 | 99854958 | 99854791 | ID=Msa0902090-mRNA-1:exon:17619;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99855174 | 99855277 | 99855174 | ID=Msa0902090-mRNA-1:exon:17620;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99855702 | 99855912 | 99855702 | ID=Msa0902090-mRNA-1:exon:17621;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99856513 | 99856596 | 99856513 | ID=Msa0902090-mRNA-1:exon:17622;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99857155 | 99857196 | 99857155 | ID=Msa0902090-mRNA-1:exon:17623;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99857286 | 99857382 | 99857286 | ID=Msa0902090-mRNA-1:exon:17624;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99857719 | 99857846 | 99857719 | ID=Msa0902090-mRNA-1:exon:17625;Parent=Msa0902090-mRNA-1 |
| chr6_1 | exon | 99858060 | 99858089 | 99858060 | ID=Msa0902090-mRNA-1:exon:17626;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99854791 | 99854958 | 99854791 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99855174 | 99855277 | 99855174 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99855702 | 99855912 | 99855702 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99856513 | 99856596 | 99856513 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99857155 | 99857196 | 99857155 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99857286 | 99857382 | 99857286 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99857719 | 99857846 | 99857719 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| chr6_1 | CDS | 99858060 | 99858089 | 99858060 | ID=Msa0902090-mRNA-1:cds;Parent=Msa0902090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
