Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577540 | XP_003630501.1 | 98.708 | 619 | 6 | 1 | 1 | 617 | 1 | 619 | 0.0 | 1259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577540 | sp|Q8L612|MACP1_ARATH | 44.320 | 625 | 317 | 12 | 7 | 614 | 8 | 618 | 1.69e-179 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577540 | G7LHB4 | 98.708 | 619 | 6 | 1 | 1 | 617 | 1 | 619 | 0.0 | 1259 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0563780 | Msa0577540 | 0.886630 | 2.893573e-72 | -8.615850e-47 |
| Msa0577540 | Msa0617600 | 0.887070 | 1.971062e-72 | -8.615850e-47 |
| Msa0577540 | Msa1306870 | 0.943556 | 9.721041e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577540 | MtrunA17_Chr8g0377631 | 98.708 | 619 | 6 | 1 | 1 | 617 | 1 | 619 | 0.0 | 1259 |
| Msa0577540 | MtrunA17_Chr3g0122211 | 77.057 | 632 | 116 | 7 | 1 | 616 | 1 | 619 | 0.0 | 977 |
| Msa0577540 | MtrunA17_Chr8g0391931 | 45.543 | 617 | 304 | 11 | 3 | 615 | 1 | 589 | 0.0 | 537 |
| Msa0577540 | MtrunA17_Chr2g0277061 | 46.029 | 617 | 290 | 13 | 7 | 614 | 11 | 593 | 0.0 | 530 |
| Msa0577540 | MtrunA17_Chr8g0385121 | 44.698 | 613 | 293 | 12 | 11 | 614 | 13 | 588 | 1.62e-167 | 491 |
| Msa0577540 | MtrunA17_Chr4g0046841 | 42.532 | 616 | 313 | 13 | 11 | 614 | 25 | 611 | 1.19e-162 | 479 |
| Msa0577540 | MtrunA17_Chr4g0013011 | 39.934 | 606 | 329 | 7 | 11 | 616 | 14 | 584 | 7.66e-146 | 434 |
| Msa0577540 | MtrunA17_Chr2g0284691 | 39.706 | 612 | 296 | 9 | 11 | 616 | 22 | 566 | 3.51e-138 | 414 |
| Msa0577540 | MtrunA17_Chr8g0385131 | 36.020 | 608 | 330 | 11 | 11 | 616 | 16 | 566 | 2.01e-118 | 363 |
| Msa0577540 | MtrunA17_Chr8g0385181 | 34.154 | 609 | 327 | 11 | 11 | 616 | 16 | 553 | 2.86e-106 | 332 |
| Msa0577540 | MtrunA17_Chr8g0385171 | 33.125 | 320 | 167 | 8 | 11 | 327 | 16 | 291 | 1.14e-46 | 166 |
| Msa0577540 | MtrunA17_Chr8g0385161 | 37.193 | 285 | 137 | 6 | 332 | 616 | 2 | 244 | 1.57e-46 | 164 |
| Msa0577540 | MtrunA17_Chr7g0274871 | 40.397 | 151 | 71 | 4 | 11 | 159 | 130 | 263 | 3.72e-24 | 102 |
| Msa0577540 | MtrunA17_Chr8g0385141 | 32.773 | 119 | 79 | 1 | 124 | 241 | 12 | 130 | 1.49e-17 | 80.9 |
| Msa0577540 | MtrunA17_Chr8g0385151 | 51.064 | 47 | 23 | 0 | 282 | 328 | 2 | 48 | 9.64e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577540 | AT1G14780.1 | 44.320 | 625 | 317 | 12 | 7 | 614 | 8 | 618 | 1.72e-180 | 525 |
| Msa0577540 | AT4G24290.2 | 44.845 | 611 | 299 | 11 | 10 | 614 | 13 | 591 | 4.63e-179 | 521 |
| Msa0577540 | AT4G24290.3 | 44.845 | 611 | 299 | 11 | 10 | 614 | 13 | 591 | 4.63e-179 | 521 |
| Msa0577540 | AT1G28380.1 | 42.693 | 609 | 321 | 8 | 11 | 614 | 18 | 603 | 8.69e-160 | 471 |
| Msa0577540 | AT1G29690.1 | 40.000 | 615 | 287 | 9 | 9 | 616 | 22 | 561 | 1.15e-144 | 431 |
| Msa0577540 | AT4G24290.1 | 44.940 | 336 | 168 | 7 | 10 | 340 | 13 | 336 | 8.17e-91 | 285 |
Find 189 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACACATCTCCTCCTCTTT+TGG | 0.177147 | 4_1:-81876858 | None:intergenic |
| CAATGTATGGTTAGGGTTAA+AGG | 0.228417 | 4_1:-81874780 | None:intergenic |
| GAGAGTGGCATTGGAATCTT+TGG | 0.230238 | 4_1:+81874891 | Msa0577540:CDS |
| TTAACGTTACGTAACGTTAA+AGG | 0.233271 | 4_1:-81874643 | None:intergenic |
| GGCATTGAAGAATTAAATTT+AGG | 0.254840 | 4_1:+81880265 | Msa0577540:three_prime_UTR |
| AGTTTGCATTGTTGGATTAT+TGG | 0.259496 | 4_1:+81880084 | Msa0577540:CDS |
| GAGAATATTCGGTGTGATAA+AGG | 0.275511 | 4_1:+81875078 | Msa0577540:CDS |
| ATCTGACTGGTTCTAGGAAT+TGG | 0.283000 | 4_1:-81879587 | None:intergenic |
| GCTAGATGTTTCTGAAATAC+TGG | 0.288805 | 4_1:-81876723 | None:intergenic |
| TTCACTGCAATTCTGCTGCT+TGG | 0.301159 | 4_1:+81877532 | Msa0577540:CDS |
| TATTATGCTGCAAATCAAAA+TGG | 0.306003 | 4_1:+81880402 | Msa0577540:three_prime_UTR |
| TGGTTCTAGGAATTGGTTAC+TGG | 0.310420 | 4_1:-81879580 | None:intergenic |
| TTAGGATATACTCCTAGTTC+TGG | 0.310613 | 4_1:+81880283 | Msa0577540:three_prime_UTR |
| TCTTCCATCTGACTGGTTCT+AGG | 0.312397 | 4_1:-81879593 | None:intergenic |
| CATTGGAATCTTTGGGTAAA+GGG | 0.330262 | 4_1:+81874899 | Msa0577540:CDS |
| GAAGAGAGGATCATCTTGTT+TGG | 0.330487 | 4_1:-81879501 | None:intergenic |
| GTGATAAAGGGGATCGAATT+CGG | 0.336226 | 4_1:+81875091 | Msa0577540:CDS |
| TAGTTAATCAATGTATGGTT+AGG | 0.345853 | 4_1:-81874788 | None:intergenic |
| TCACTGCAATTCTGCTGCTT+GGG | 0.347746 | 4_1:+81877533 | Msa0577540:CDS |
| TCGCTTCTGACTGGAATTCC+TGG | 0.348233 | 4_1:+81876959 | Msa0577540:CDS |
| TCAAGCACAGTCACTCAAAT+TGG | 0.363216 | 4_1:+81876879 | Msa0577540:CDS |
| GTTGGATTATTGGTGATTCT+AGG | 0.363354 | 4_1:+81880094 | Msa0577540:exon |
| AACTTGAATATGATCGCTTC+AGG | 0.369856 | 4_1:-81876923 | None:intergenic |
| TTTGGGTAAAGGGTTTGATT+TGG | 0.371576 | 4_1:+81874909 | Msa0577540:CDS |
| GCAGGTAAAGTTTGCATTGT+TGG | 0.373500 | 4_1:+81880076 | Msa0577540:CDS |
| TACTGTAATCAAAGGTGTTT+CGG | 0.379152 | 4_1:+81875056 | Msa0577540:CDS |
| CCGCAATCATTCAACCAGTT+AGG | 0.384521 | 4_1:-81879654 | None:intergenic |
| GGTTGGCCTTCGCTTGTACC+TGG | 0.386698 | 4_1:+81879425 | Msa0577540:CDS |
| TCGTCAAGCATGACCCTAAC+TGG | 0.393408 | 4_1:+81879640 | Msa0577540:CDS |
| TGACTAAGATAGCCACTTCC+AGG | 0.394554 | 4_1:-81876977 | None:intergenic |
| AGAATATTCGGTGTGATAAA+GGG | 0.394686 | 4_1:+81875079 | Msa0577540:CDS |
| AGGAGGCATTTAGAGGATCT+TGG | 0.398026 | 4_1:+81876502 | Msa0577540:CDS |
| AAGGTGTTTCGGAGAATATT+CGG | 0.404078 | 4_1:+81875067 | Msa0577540:CDS |
| CCGATTTCCTCGCTTCTGAC+TGG | 0.404874 | 4_1:+81876950 | Msa0577540:CDS |
| ACATAACTAATTGTACTATA+CGG | 0.407090 | 4_1:+81879763 | Msa0577540:CDS |
| AAGAGAGGATCATCTTGTTT+GGG | 0.410103 | 4_1:-81879500 | None:intergenic |
| TTTGAGTATGGAGGTGGAAG+AGG | 0.412109 | 4_1:+81874861 | Msa0577540:exon |
| CTCATGATGCTCCTGGCCAT+TGG | 0.412968 | 4_1:+81880006 | Msa0577540:CDS |
| AATGTATGGTTAGGGTTAAA+GGG | 0.416606 | 4_1:-81874779 | None:intergenic |
| CATGTAAATATCCTTTCAAA+AGG | 0.421252 | 4_1:+81880199 | Msa0577540:three_prime_UTR |
| GGGTGGTAAGATAGGATTGC+AGG | 0.431154 | 4_1:+81880058 | Msa0577540:CDS |
| AGTGCAGTTGGAGCCTGCTT+TGG | 0.431391 | 4_1:-81879891 | None:intergenic |
| GTAGAGCTAATATGAAGCTT+TGG | 0.431914 | 4_1:-81877557 | None:intergenic |
| GGGTGAAGTGAAGAAGATAC+TGG | 0.435581 | 4_1:-81874563 | None:intergenic |
| GGAGGTGTTTACATTGTAAC+TGG | 0.436245 | 4_1:+81879675 | Msa0577540:CDS |
| CGCCACATAGATTGTATGCT+CGG | 0.439529 | 4_1:-81879537 | None:intergenic |
| ATTGAGGAATGGAAGATAAG+AGG | 0.439565 | 4_1:-81874584 | None:intergenic |
| GTCACTGAGGGTGGTAAGAT+AGG | 0.443404 | 4_1:+81880050 | Msa0577540:CDS |
| CGCAATCATTCAACCAGTTA+GGG | 0.443890 | 4_1:-81879653 | None:intergenic |
| AAAGGGCGAATTGTAATGAT+AGG | 0.445036 | 4_1:+81880369 | Msa0577540:three_prime_UTR |
| GCAGTTGGAGCCTGCTTTGG+TGG | 0.446081 | 4_1:-81879888 | None:intergenic |
| TGCTGCTGCTCCACCAAAGC+AGG | 0.451153 | 4_1:+81879878 | Msa0577540:CDS |
| ACAGGCACAGGTGGCCCGTT+AGG | 0.452278 | 4_1:-81879930 | None:intergenic |
| AGATTCCTCCCGGTGATGTC+AGG | 0.452304 | 4_1:+81876482 | Msa0577540:CDS |
| AGTGAAGAAGATACTGGAAA+TGG | 0.453068 | 4_1:-81874557 | None:intergenic |
| TGATGTACTTGAATTCAATC+AGG | 0.454142 | 4_1:+81875122 | Msa0577540:CDS |
| AACATGGGCGCCCATTGCCT+TGG | 0.456623 | 4_1:-81877464 | None:intergenic |
| TGATGTCAGGAGGCATTTAG+AGG | 0.456917 | 4_1:+81876495 | Msa0577540:CDS |
| GGAAGAGGGTATTGAGAGAG+TGG | 0.461485 | 4_1:+81874876 | Msa0577540:CDS |
| GCATTGGAATCTTTGGGTAA+AGG | 0.461487 | 4_1:+81874898 | Msa0577540:CDS |
| TACTATACGGAAGTCGGAGT+GGG | 0.462446 | 4_1:+81879776 | Msa0577540:CDS |
| TCAAGAGGAAGTAAAGAAAT+CGG | 0.462918 | 4_1:+81875890 | Msa0577540:CDS |
| ATCACACGGTTAAAGACCTC+TGG | 0.464602 | 4_1:-81876677 | None:intergenic |
| GGGTATTGAGAGAGTGGCAT+TGG | 0.469106 | 4_1:+81874882 | Msa0577540:CDS |
| GCCACATAGATTGTATGCTC+GGG | 0.469485 | 4_1:-81879536 | None:intergenic |
| GTCTTCCTCTGTAGTGAAGA+AGG | 0.470468 | 4_1:-81876553 | None:intergenic |
| TTGAGTATGGAGGTGGAAGA+GGG | 0.472470 | 4_1:+81874862 | Msa0577540:exon |
| ACTATTATTTGCTCCAAAAG+AGG | 0.472552 | 4_1:+81876845 | Msa0577540:CDS |
| TATTGTAAATCTTCGGGAGA+TGG | 0.473016 | 4_1:-81877422 | None:intergenic |
| GAGAATCTCTTCCATCTGAC+TGG | 0.474626 | 4_1:-81879600 | None:intergenic |
| TTGAGGAATGGAAGATAAGA+GGG | 0.477143 | 4_1:-81874583 | None:intergenic |
| AACCCTAGTTAATCAATGTA+TGG | 0.479138 | 4_1:-81874793 | None:intergenic |
| GAGAGGCAGTTCGCAAAACA+TGG | 0.481092 | 4_1:-81877480 | None:intergenic |
| TAACCATACATTGATTAACT+AGG | 0.481863 | 4_1:+81874790 | Msa0577540:five_prime_UTR |
| ACTCTGGCATTTATCCTAAC+GGG | 0.485310 | 4_1:+81879916 | Msa0577540:CDS |
| AGTTTCAAATTCCAAGGCAA+TGG | 0.486879 | 4_1:+81877453 | Msa0577540:CDS |
| CGTGGCCCTCATGATGCTCC+TGG | 0.488042 | 4_1:+81879999 | Msa0577540:CDS |
| GGTGGTAAGTGAACAGAAAC+CGG | 0.489122 | 4_1:+81879401 | Msa0577540:intron |
| CCAGTCAGAAGCGAGGAAAT+CGG | 0.490740 | 4_1:-81876950 | None:intergenic |
| GTTTACCTAGACAATGAAGC+TGG | 0.491289 | 4_1:-81875930 | None:intergenic |
| AACCATACATTGATTAACTA+GGG | 0.491332 | 4_1:+81874791 | Msa0577540:five_prime_UTR |
| AGTAGTTTACTCGAGCGAAC+AGG | 0.491644 | 4_1:-81879948 | None:intergenic |
| GTTTCAAATTCCAAGGCAAT+GGG | 0.492656 | 4_1:+81877454 | Msa0577540:CDS |
| AGTTAATCAATGTATGGTTA+GGG | 0.498421 | 4_1:-81874787 | None:intergenic |
| CTATGTGAGTACCATATGTC+TGG | 0.499457 | 4_1:-81876399 | None:intergenic |
| GCAGCAGAATTGCAGTGAAA+GGG | 0.504493 | 4_1:-81877528 | None:intergenic |
| TTCTGGCCCAAGTAATAATG+AGG | 0.507924 | 4_1:-81880466 | None:intergenic |
| AACTCTGGCATTTATCCTAA+CGG | 0.512099 | 4_1:+81879915 | Msa0577540:CDS |
| GGCAGGTTCATCCAGACATA+TGG | 0.513057 | 4_1:+81876388 | Msa0577540:intron |
| AGGTTTGCAAAGGGAATTCG+TGG | 0.514538 | 4_1:+81874949 | Msa0577540:CDS |
| GAAGCTGGATCCCACTGAGC+TGG | 0.519884 | 4_1:-81875915 | None:intergenic |
| TGATGCTCCTGGCCATTGGT+TGG | 0.521972 | 4_1:+81880010 | Msa0577540:CDS |
| AGCAGCAGAATTGCAGTGAA+AGG | 0.525562 | 4_1:-81877529 | None:intergenic |
| TGCTTGATGAACAAAATAAG+AGG | 0.526394 | 4_1:+81875004 | Msa0577540:CDS |
| GAAATCGAAATGAAAGTTCG+AGG | 0.526834 | 4_1:-81874689 | None:intergenic |
| TTTAGGTTAAGGTTTGCAAA+GGG | 0.527453 | 4_1:+81874940 | Msa0577540:CDS |
| TAATAGTAAAAGTAAGAGGT+TGG | 0.527538 | 4_1:+81874978 | Msa0577540:CDS |
| AACTGCCTCTCAGGCATCAG+CGG | 0.527628 | 4_1:+81877492 | Msa0577540:CDS |
| GACGGCAGATAGCAAACATA+AGG | 0.531482 | 4_1:+81876573 | Msa0577540:CDS |
| ATTATCATAGCTATGCTGCC+TGG | 0.531723 | 4_1:-81880427 | None:intergenic |
| CTGCAAATCAAAATGGATCC+AGG | 0.531911 | 4_1:+81880409 | Msa0577540:three_prime_UTR |
| GGCCTTCGCTTGTACCTGGA+GGG | 0.540226 | 4_1:+81879429 | Msa0577540:CDS |
| GCAAAGGGAATTCGTGGGAG+TGG | 0.541117 | 4_1:+81874955 | Msa0577540:CDS |
| AGAGTGGCATTGGAATCTTT+GGG | 0.541778 | 4_1:+81874892 | Msa0577540:CDS |
| ATGCCAGAGTTAAGTGCAGT+TGG | 0.542829 | 4_1:-81879903 | None:intergenic |
| TCAACGAAAGGAGTTAACTT+TGG | 0.545612 | 4_1:-81874756 | None:intergenic |
| GCTGTAACCAACCAATGGCC+AGG | 0.549195 | 4_1:-81880017 | None:intergenic |
| AGAAATCGGTTCCAGCTCAG+TGG | 0.550705 | 4_1:+81875904 | Msa0577540:CDS |
| AAATGCCTCCTGACATCACC+GGG | 0.554590 | 4_1:-81876490 | None:intergenic |
| CTGACTGGAATTCCTGGAAG+TGG | 0.554762 | 4_1:+81876965 | Msa0577540:CDS |
| ACAGTAGCTCCACCAGCTCC+AGG | 0.554800 | 4_1:-81875039 | None:intergenic |
| GTGGTAGGCATGGCTGTTGG+AGG | 0.555126 | 4_1:+81876421 | Msa0577540:CDS |
| GGGATCCAGCTTCATTGTCT+AGG | 0.555304 | 4_1:+81875925 | Msa0577540:CDS |
| TTCTCCGCTTGTACTTCAAG+AGG | 0.563723 | 4_1:+81875875 | Msa0577540:CDS |
| TGGCCTTCGCTTGTACCTGG+AGG | 0.564843 | 4_1:+81879428 | Msa0577540:CDS |
| TTACTCGAGCGAACAGGCAC+AGG | 0.565735 | 4_1:-81879942 | None:intergenic |
| ACTTCCTCTTGAAGTACAAG+CGG | 0.569301 | 4_1:-81875879 | None:intergenic |
| GTGGTAATAGTAAAAGTAAG+AGG | 0.569684 | 4_1:+81874974 | Msa0577540:CDS |
| AATTCCTAGAACCAGTCAGA+TGG | 0.572976 | 4_1:+81879589 | Msa0577540:CDS |
| ACTAAAATATCTCCAGAACT+AGG | 0.573297 | 4_1:-81880295 | None:intergenic |
| GTAAATTGTTGATTGAGGAA+TGG | 0.575787 | 4_1:-81874595 | None:intergenic |
| TAAATGCCTCCTGACATCAC+CGG | 0.575820 | 4_1:-81876491 | None:intergenic |
| GAATTGCAGTGAAAGGGAAG+AGG | 0.576763 | 4_1:-81877522 | None:intergenic |
| GCTCCAACTGCACTTAACTC+TGG | 0.578400 | 4_1:+81879900 | Msa0577540:CDS |
| CTCGAGCGAACAGGCACAGG+TGG | 0.581565 | 4_1:-81879939 | None:intergenic |
| TCTTCCTCTGTAGTGAAGAA+GGG | 0.584229 | 4_1:-81876552 | None:intergenic |
| GCTGCTAAGCTTGTCACTGA+GGG | 0.585435 | 4_1:+81880038 | Msa0577540:CDS |
| GCTAAGCTTGTCACTGAGGG+TGG | 0.587930 | 4_1:+81880041 | Msa0577540:CDS |
| GCTTGATGAACAAAATAAGA+GGG | 0.588156 | 4_1:+81875005 | Msa0577540:CDS |
| GGAGTGGGGCGCCGCACCAG+AGG | 0.589221 | 4_1:+81879791 | Msa0577540:CDS |
| TACTCACATAGTGGTAGGCA+TGG | 0.589782 | 4_1:+81876411 | Msa0577540:CDS |
| GAAGGTGGTGAATATTAGAT+CGG | 0.590313 | 4_1:-81874667 | None:intergenic |
| TGCCCTCCAGGTACAAGCGA+AGG | 0.591411 | 4_1:-81879431 | None:intergenic |
| AAGATGATCCTCTCTTCAGA+TGG | 0.594382 | 4_1:+81879507 | Msa0577540:CDS |
| GAATATTCGGTGTGATAAAG+GGG | 0.596081 | 4_1:+81875080 | Msa0577540:CDS |
| AGAGGATCATCTTGTTTGGG+AGG | 0.596904 | 4_1:-81879497 | None:intergenic |
| GACATATGGTACTCACATAG+TGG | 0.597421 | 4_1:+81876402 | Msa0577540:CDS |
| GAAATCGGTTCCAGCTCAGT+GGG | 0.597458 | 4_1:+81875905 | Msa0577540:CDS |
| CATTCATCAAAGATTCCTCC+CGG | 0.599259 | 4_1:+81876472 | Msa0577540:CDS |
| ATAGTGGTAGGCATGGCTGT+TGG | 0.602545 | 4_1:+81876418 | Msa0577540:CDS |
| TTCCTCCCGGTGATGTCAGG+AGG | 0.603487 | 4_1:+81876485 | Msa0577540:CDS |
| ATTTGATGTCAGCGGCGTCA+CGG | 0.604538 | 4_1:-81875800 | None:intergenic |
| TAATTGTACTATACGGAAGT+CGG | 0.605913 | 4_1:+81879770 | Msa0577540:CDS |
| TACAAGCGAAGGCCAACCAC+CGG | 0.616819 | 4_1:-81879420 | None:intergenic |
| TATGGTACTCACATAGTGGT+AGG | 0.617208 | 4_1:+81876406 | Msa0577540:CDS |
| TTTCTCCGCTGATGCCTGAG+AGG | 0.617256 | 4_1:-81877497 | None:intergenic |
| ATTATTTGCTCCAAAAGAGG+AGG | 0.618881 | 4_1:+81876848 | Msa0577540:CDS |
| CAATGGCCAGGAGCATCATG+AGG | 0.619232 | 4_1:-81880005 | None:intergenic |
| AGCTCATTATCAGAGGGAGT+TGG | 0.620316 | 4_1:+81879703 | Msa0577540:CDS |
| ATGATCGCTTCAGGATTCGA+AGG | 0.621664 | 4_1:-81876914 | None:intergenic |
| AGGGTTAAAGGGTCAACGAA+AGG | 0.622420 | 4_1:-81874768 | None:intergenic |
| CCCCGAGCATACAATCTATG+TGG | 0.622841 | 4_1:+81879535 | Msa0577540:CDS |
| GGATTATTGGTGATTCTAGG+TGG | 0.626254 | 4_1:+81880097 | Msa0577540:exon |
| AGAGGCAGTTCGCAAAACAT+GGG | 0.626848 | 4_1:-81877479 | None:intergenic |
| TCGAAATGAAAGTTCGAGGA+AGG | 0.628457 | 4_1:-81874685 | None:intergenic |
| CCACATAGATTGTATGCTCG+GGG | 0.631306 | 4_1:-81879535 | None:intergenic |
| TCACACGGTTAAAGACCTCT+GGG | 0.633122 | 4_1:-81876676 | None:intergenic |
| AGTGAACAGAAACCGGTGGT+TGG | 0.633482 | 4_1:+81879408 | Msa0577540:CDS |
| GGTGGAGCTACTGTAATCAA+AGG | 0.633778 | 4_1:+81875048 | Msa0577540:CDS |
| AAATGAAAGTTCGAGGAAGG+TGG | 0.638854 | 4_1:-81874682 | None:intergenic |
| AGCATACAATCTATGTGGCG+AGG | 0.640660 | 4_1:+81879540 | Msa0577540:CDS |
| AGCTGCTAAGCTTGTCACTG+AGG | 0.642027 | 4_1:+81880037 | Msa0577540:CDS |
| TAGCAGCTGTAACCAACCAA+TGG | 0.649488 | 4_1:-81880022 | None:intergenic |
| GGTGCACAGCTCATTATCAG+AGG | 0.649959 | 4_1:+81879696 | Msa0577540:CDS |
| CCTAACTGGTTGAATGATTG+CGG | 0.650368 | 4_1:+81879654 | Msa0577540:CDS |
| GGGTTGAGCCATCTGAAGAG+AGG | 0.650782 | 4_1:-81879515 | None:intergenic |
| GTGCACAGCTCATTATCAGA+GGG | 0.653438 | 4_1:+81879697 | Msa0577540:CDS |
| AGAGCATTAAAATAGCCAGA+AGG | 0.654613 | 4_1:-81875753 | None:intergenic |
| TGGTGTTTGATTGCATCACA+CGG | 0.656883 | 4_1:-81876691 | None:intergenic |
| GTACTATACGGAAGTCGGAG+TGG | 0.657236 | 4_1:+81879775 | Msa0577540:CDS |
| TTCTTCACTACAGAGGAAGA+CGG | 0.659925 | 4_1:+81876555 | Msa0577540:CDS |
| AGCAAGATATTTGATGTCAG+CGG | 0.663279 | 4_1:-81875808 | None:intergenic |
| AATGGCCAGGAGCATCATGA+GGG | 0.667616 | 4_1:-81880004 | None:intergenic |
| GAAGCCCTTCTTCACTACAG+AGG | 0.667777 | 4_1:+81876548 | Msa0577540:CDS |
| GGTTTGCAAAGGGAATTCGT+GGG | 0.672055 | 4_1:+81874950 | Msa0577540:CDS |
| AGTACAGTATACAAAATGAG+TGG | 0.676644 | 4_1:+81880230 | Msa0577540:three_prime_UTR |
| TAAATACGTCGAGACAGCTG+AGG | 0.683978 | 4_1:+81879971 | Msa0577540:CDS |
| TCTCTATATGTAGGTCCCAG+AGG | 0.687673 | 4_1:+81876661 | Msa0577540:intron |
| GCTTCATATTAGCTCTACAG+AGG | 0.691226 | 4_1:+81877562 | Msa0577540:CDS |
| AGGAATTCCAGTCAGAAGCG+AGG | 0.695982 | 4_1:-81876957 | None:intergenic |
| AATGAGTGGCTGTTGACATG+AGG | 0.699298 | 4_1:+81880244 | Msa0577540:three_prime_UTR |
| ACTATACGGAAGTCGGAGTG+GGG | 0.706058 | 4_1:+81879777 | Msa0577540:CDS |
| GAAAAGGGTAACATAAACTG+CGG | 0.710098 | 4_1:-81874723 | None:intergenic |
| TGAAATACTGGTAAACTGTG+TGG | 0.710464 | 4_1:-81876711 | None:intergenic |
| AACTGGTTGAATGATTGCGG+AGG | 0.722726 | 4_1:+81879657 | Msa0577540:CDS |
| GCAACACTAAATGATAACCA+CGG | 0.728843 | 4_1:-81880147 | None:intergenic |
| GGTAAGTGAACAGAAACCGG+TGG | 0.737124 | 4_1:+81879404 | Msa0577540:CDS |
| TGCCTCCTGACATCACCGGG+AGG | 0.750953 | 4_1:-81876487 | None:intergenic |
| CTGAAGTGATAAGATCACCG+TGG | 0.787954 | 4_1:+81880130 | Msa0577540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATTTTGTTATTATTA+AGG | + | chr4_1:81877360-81877379 | Msa0577540:intron | 10.0% |
| !! | TAAAAAATATTGTAAATCTT+CGG | - | chr4_1:81877432-81877451 | None:intergenic | 10.0% |
| !!! | TTTAAAAAGTTGTCTAATTT+TGG | - | chr4_1:81875364-81875383 | None:intergenic | 15.0% |
| !! | AAAAAATATTGTAAATCTTC+GGG | - | chr4_1:81877431-81877450 | None:intergenic | 15.0% |
| !!! | TCTTTTATTTATATATCAAG+TGG | + | chr4_1:81878117-81878136 | Msa0577540:intron | 15.0% |
| !! | TGTAAAAAATGTTAAGAAAA+GGG | + | chr4_1:81880352-81880371 | Msa0577540:three_prime_UTR | 15.0% |
| !!! | ATTTGTGTTTTGTTTTGTTT+TGG | - | chr4_1:81874620-81874639 | None:intergenic | 20.0% |
| !! | AAAAATCAGAACAAAAAAAC+AGG | - | chr4_1:81874837-81874856 | None:intergenic | 20.0% |
| !!! | TGATTTTTCATTTTTGAGTA+TGG | + | chr4_1:81874849-81874868 | Msa0577540:exon | 20.0% |
| !!! | TGTTATTTGAATGTCAAATT+TGG | + | chr4_1:81875334-81875353 | Msa0577540:intron | 20.0% |
| !! | GTTATTTGAATGTCAAATTT+GGG | + | chr4_1:81875335-81875354 | Msa0577540:intron | 20.0% |
| !! | GTTAATCATGTTTAAATTTG+TGG | + | chr4_1:81875434-81875453 | Msa0577540:intron | 20.0% |
| !! | ATGAAATGGTAGATTATATT+TGG | - | chr4_1:81875475-81875494 | None:intergenic | 20.0% |
| !! | ATATCAATGATTAAGAAATC+TGG | + | chr4_1:81875620-81875639 | Msa0577540:intron | 20.0% |
| !! | TATCAATGATTAAGAAATCT+GGG | + | chr4_1:81875621-81875640 | Msa0577540:intron | 20.0% |
| !! | CAAAAATACTAAATCTTGTA+GGG | - | chr4_1:81876117-81876136 | None:intergenic | 20.0% |
| !!! | AATCAGATTCTTTTATCAAT+TGG | - | chr4_1:81876155-81876174 | None:intergenic | 20.0% |
| !!! | TTTGAATGATGTGTAATTTT+GGG | + | chr4_1:81876332-81876351 | Msa0577540:intron | 20.0% |
| !! | AATACTAATAAACCTAAACT+GGG | - | chr4_1:81877069-81877088 | None:intergenic | 20.0% |
| !! | AAATACTAATAAACCTAAAC+TGG | - | chr4_1:81877070-81877089 | None:intergenic | 20.0% |
| !!! | AAAACATATTAGTTTTTCTG+TGG | - | chr4_1:81877260-81877279 | None:intergenic | 20.0% |
| !!! | ACAGAAAAACTAATATGTTT+TGG | + | chr4_1:81877259-81877278 | Msa0577540:intron | 20.0% |
| !! | AGAAAAAATAACTAGTTGAT+GGG | - | chr4_1:81878490-81878509 | None:intergenic | 20.0% |
| !! | TGTATTAATCTTAGTGATAT+TGG | - | chr4_1:81878586-81878605 | None:intergenic | 20.0% |
| !! | TATATCTAGTAACTTGAAAA+GGG | + | chr4_1:81878970-81878989 | Msa0577540:intron | 20.0% |
| !! | AACTTACCTATAAAAATGAA+AGG | - | chr4_1:81879337-81879356 | None:intergenic | 20.0% |
| !!! | TTATGGTATTTTGTACAAAA+TGG | + | chr4_1:81879376-81879395 | Msa0577540:intron | 20.0% |
| !! | ACATAACTAATTGTACTATA+CGG | + | chr4_1:81879763-81879782 | Msa0577540:CDS | 20.0% |
| !! | CTGTAAAAAATGTTAAGAAA+AGG | + | chr4_1:81880351-81880370 | Msa0577540:three_prime_UTR | 20.0% |
| !!! | TTTTGGTAAATTGTTGATTG+AGG | - | chr4_1:81874603-81874622 | None:intergenic | 25.0% |
| ! | AGTTAATCAATGTATGGTTA+GGG | - | chr4_1:81874790-81874809 | None:intergenic | 25.0% |
| ! | TAGTTAATCAATGTATGGTT+AGG | - | chr4_1:81874791-81874810 | None:intergenic | 25.0% |
| !! | TAACCATACATTGATTAACT+AGG | + | chr4_1:81874790-81874809 | Msa0577540:five_prime_UTR | 25.0% |
| !! | AACCATACATTGATTAACTA+GGG | + | chr4_1:81874791-81874810 | Msa0577540:five_prime_UTR | 25.0% |
| !!! | TTTTTCATTTTTGAGTATGG+AGG | + | chr4_1:81874852-81874871 | Msa0577540:exon | 25.0% |
| ! | TAATAGTAAAAGTAAGAGGT+TGG | + | chr4_1:81874978-81874997 | Msa0577540:CDS | 25.0% |
| ! | ATTTGAAAAGTTGAGAATTG+AGG | + | chr4_1:81875412-81875431 | Msa0577540:intron | 25.0% |
| !!! | ACATTTTGTTTTAAAAACCC+TGG | + | chr4_1:81875569-81875588 | Msa0577540:intron | 25.0% |
| ! | TTCAACTTCTTATATAACCA+GGG | - | chr4_1:81875589-81875608 | None:intergenic | 25.0% |
| ! | ATTCAACTTCTTATATAACC+AGG | - | chr4_1:81875590-81875609 | None:intergenic | 25.0% |
| !!! | ATCAAATATCTTGCTTTTGA+TGG | + | chr4_1:81875816-81875835 | Msa0577540:CDS | 25.0% |
| ! | CCAAAAATACTAAATCTTGT+AGG | - | chr4_1:81876118-81876137 | None:intergenic | 25.0% |
| !! | CCTACAAGATTTAGTATTTT+TGG | + | chr4_1:81876115-81876134 | Msa0577540:intron | 25.0% |
| ! | ATCTGATTTCTTCTTACTTT+CGG | + | chr4_1:81876167-81876186 | Msa0577540:intron | 25.0% |
| ! | TCACTTACAAATCATTCTAA+CGG | - | chr4_1:81876281-81876300 | None:intergenic | 25.0% |
| ! | AAATTACACATCATTCAAAC+CGG | - | chr4_1:81876331-81876350 | None:intergenic | 25.0% |
| !! | GTTTGAATGATGTGTAATTT+TGG | + | chr4_1:81876331-81876350 | Msa0577540:intron | 25.0% |
| !! | GTAACCTCAATATGAATTTT+TGG | + | chr4_1:81876614-81876633 | Msa0577540:intron | 25.0% |
| ! | GAAACCAAAAATTCATATTG+AGG | - | chr4_1:81876621-81876640 | None:intergenic | 25.0% |
| ! | CATAATGTATTGCTTTATCT+TGG | + | chr4_1:81876811-81876830 | Msa0577540:intron | 25.0% |
| ! | ATCTTGTGTGTTTATGTTTA+TGG | - | chr4_1:81877187-81877206 | None:intergenic | 25.0% |
| ! | TTCTAAATGTGTACAAAATG+TGG | + | chr4_1:81877218-81877237 | Msa0577540:intron | 25.0% |
| !!! | TTTTAGAGTTTCAAATTCCA+AGG | + | chr4_1:81877447-81877466 | Msa0577540:CDS | 25.0% |
| ! | TATATATCTAAAAGGCAGAA+GGG | - | chr4_1:81877801-81877820 | None:intergenic | 25.0% |
| ! | ATATATATCTAAAAGGCAGA+AGG | - | chr4_1:81877802-81877821 | None:intergenic | 25.0% |
| ! | GTTGGACATATATATCTAAA+AGG | - | chr4_1:81877809-81877828 | None:intergenic | 25.0% |
| ! | ACTTATCAGTTTAAGCTAAT+GGG | + | chr4_1:81877844-81877863 | Msa0577540:intron | 25.0% |
| ! | TTGGTTTCTCAAATAATTCT+CGG | + | chr4_1:81877920-81877939 | Msa0577540:intron | 25.0% |
| ! | AAAAGAGGATAGAAAATGAA+GGG | - | chr4_1:81877956-81877975 | None:intergenic | 25.0% |
| !! | TCATTGAAGTTTAGGTTTAA+AGG | + | chr4_1:81877983-81878002 | Msa0577540:intron | 25.0% |
| ! | TGTAATACATATTCACAAAG+AGG | - | chr4_1:81878287-81878306 | None:intergenic | 25.0% |
| ! | GAAATGAAAACATTGAGATA+AGG | - | chr4_1:81878381-81878400 | None:intergenic | 25.0% |
| ! | CAGAAAAAATAACTAGTTGA+TGG | - | chr4_1:81878491-81878510 | None:intergenic | 25.0% |
| !!! | TTGAATATACTGGTTTTTCT+TGG | + | chr4_1:81878546-81878565 | Msa0577540:intron | 25.0% |
| !!! | TGAATATACTGGTTTTTCTT+GGG | + | chr4_1:81878547-81878566 | Msa0577540:intron | 25.0% |
| ! | TCACTAAGATTAATACACTA+CGG | + | chr4_1:81878589-81878608 | Msa0577540:intron | 25.0% |
| ! | TATGAATGAAGTGTATAGTT+TGG | + | chr4_1:81878745-81878764 | Msa0577540:intron | 25.0% |
| !! | AAAGTACTTATATTTAGGGA+CGG | - | chr4_1:81878787-81878806 | None:intergenic | 25.0% |
| !! | GGTCAAAGTACTTATATTTA+GGG | - | chr4_1:81878791-81878810 | None:intergenic | 25.0% |
| !! | TGGTCAAAGTACTTATATTT+AGG | - | chr4_1:81878792-81878811 | None:intergenic | 25.0% |
| !! | TTTTCTTAATTCTCGTGAAT+TGG | - | chr4_1:81878812-81878831 | None:intergenic | 25.0% |
| ! | TCACGAGAATTAAGAAAATT+AGG | + | chr4_1:81878814-81878833 | Msa0577540:intron | 25.0% |
| !! | TCTCGAGTTTTTAAATAATC+AGG | + | chr4_1:81878925-81878944 | Msa0577540:intron | 25.0% |
| !! | CTCGAGTTTTTAAATAATCA+GGG | + | chr4_1:81878926-81878945 | Msa0577540:intron | 25.0% |
| ! | GTATATCTAGTAACTTGAAA+AGG | + | chr4_1:81878969-81878988 | Msa0577540:intron | 25.0% |
| ! | ATATCTAGTAACTTGAAAAG+GGG | + | chr4_1:81878971-81878990 | Msa0577540:intron | 25.0% |
| ! | TTGAAAAGGGGTTTATAAAA+TGG | + | chr4_1:81878983-81879002 | Msa0577540:intron | 25.0% |
| ! | TGAAAAGGGGTTTATAAAAT+GGG | + | chr4_1:81878984-81879003 | Msa0577540:intron | 25.0% |
| ! | TCCAAAAAAAGCTTATATTG+AGG | + | chr4_1:81879021-81879040 | Msa0577540:intron | 25.0% |
| ! | CCAAAAAAAGCTTATATTGA+GGG | + | chr4_1:81879022-81879041 | Msa0577540:intron | 25.0% |
| !!! | ATTTTGGGATGTGATATTTT+GGG | + | chr4_1:81879113-81879132 | Msa0577540:intron | 25.0% |
| ! | ATTATCATATTATGGCATGT+TGG | - | chr4_1:81879166-81879185 | None:intergenic | 25.0% |
| ! | ATTCTCTCGTTCATTAATTA+TGG | + | chr4_1:81879359-81879378 | Msa0577540:intron | 25.0% |
| ! | CATGTAAATATCCTTTCAAA+AGG | + | chr4_1:81880199-81880218 | Msa0577540:three_prime_UTR | 25.0% |
| !! | GGCATTGAAGAATTAAATTT+AGG | + | chr4_1:81880265-81880284 | Msa0577540:three_prime_UTR | 25.0% |
| ! | TATTATGCTGCAAATCAAAA+TGG | + | chr4_1:81880402-81880421 | Msa0577540:three_prime_UTR | 25.0% |
| ! | GTAAATTGTTGATTGAGGAA+TGG | - | chr4_1:81874598-81874617 | None:intergenic | 30.0% |
| TTAACGTTACGTAACGTTAA+AGG | - | chr4_1:81874646-81874665 | None:intergenic | 30.0% | |
| !!! | TTTGGTGTTTTTGCTGAAAA+GGG | - | chr4_1:81874741-81874760 | None:intergenic | 30.0% |
| AATGTATGGTTAGGGTTAAA+GGG | - | chr4_1:81874782-81874801 | None:intergenic | 30.0% | |
| AACCCTAGTTAATCAATGTA+TGG | - | chr4_1:81874796-81874815 | None:intergenic | 30.0% | |
| !!! | TTGATTTGGCTAGTGATTTT+AGG | + | chr4_1:81874923-81874942 | Msa0577540:CDS | 30.0% |
| !!! | TTTTAGGTTAAGGTTTGCAA+AGG | + | chr4_1:81874939-81874958 | Msa0577540:CDS | 30.0% |
| ! | TTTAGGTTAAGGTTTGCAAA+GGG | + | chr4_1:81874940-81874959 | Msa0577540:CDS | 30.0% |
| GTGGTAATAGTAAAAGTAAG+AGG | + | chr4_1:81874974-81874993 | Msa0577540:CDS | 30.0% | |
| TGCTTGATGAACAAAATAAG+AGG | + | chr4_1:81875004-81875023 | Msa0577540:CDS | 30.0% | |
| GCTTGATGAACAAAATAAGA+GGG | + | chr4_1:81875005-81875024 | Msa0577540:CDS | 30.0% | |
| !! | TACTGTAATCAAAGGTGTTT+CGG | + | chr4_1:81875056-81875075 | Msa0577540:CDS | 30.0% |
| !! | AGAATATTCGGTGTGATAAA+GGG | + | chr4_1:81875079-81875098 | Msa0577540:CDS | 30.0% |
| TGATGTACTTGAATTCAATC+AGG | + | chr4_1:81875122-81875141 | Msa0577540:CDS | 30.0% | |
| !! | ATTGATTGCTGTTTGTATTG+CGG | + | chr4_1:81875253-81875272 | Msa0577540:intron | 30.0% |
| TTCAAACGTGTCTAATGAAA+TGG | - | chr4_1:81875489-81875508 | None:intergenic | 30.0% | |
| AATCAAAAATCAGCAGTACA+AGG | + | chr4_1:81875723-81875742 | Msa0577540:CDS | 30.0% | |
| ! | AATGCTCTTTTTGATATGAG+CGG | + | chr4_1:81875768-81875787 | Msa0577540:CDS | 30.0% |
| TCAAGAGGAAGTAAAGAAAT+CGG | + | chr4_1:81875890-81875909 | Msa0577540:CDS | 30.0% | |
| TTCAATGTCAAGAGAAGTAA+TGG | - | chr4_1:81876038-81876057 | None:intergenic | 30.0% | |
| AATACTAAATCTTGTAGGGA+TGG | - | chr4_1:81876113-81876132 | None:intergenic | 30.0% | |
| CACTTACAAATCATTCTAAC+GGG | - | chr4_1:81876280-81876299 | None:intergenic | 30.0% | |
| ATGCGAATATTTCTCATTGT+GGG | - | chr4_1:81876760-81876779 | None:intergenic | 30.0% | |
| AATGCGAATATTTCTCATTG+TGG | - | chr4_1:81876761-81876780 | None:intergenic | 30.0% | |
| ATACATTATGTTCGCAAACT+AGG | - | chr4_1:81876801-81876820 | None:intergenic | 30.0% | |
| TATTGCTTTATCTTGGAACA+GGG | + | chr4_1:81876818-81876837 | Msa0577540:intron | 30.0% | |
| !!! | TTTTGGAGCAAATAATAGTG+AGG | - | chr4_1:81876844-81876863 | None:intergenic | 30.0% |
| ACTATTATTTGCTCCAAAAG+AGG | + | chr4_1:81876845-81876864 | Msa0577540:CDS | 30.0% | |
| TAATAAACCTAAACTGGGTA+TGG | - | chr4_1:81877064-81877083 | None:intergenic | 30.0% | |
| TAAGCTCCAAAATATGAACT+AGG | + | chr4_1:81877113-81877132 | Msa0577540:intron | 30.0% | |
| AAGCTCCAAAATATGAACTA+GGG | + | chr4_1:81877114-81877133 | Msa0577540:intron | 30.0% | |
| ! | CACGTGAATCAAAAGTTTTT+CGG | - | chr4_1:81877387-81877406 | None:intergenic | 30.0% |
| CACTTATCAGTTTAAGCTAA+TGG | + | chr4_1:81877843-81877862 | Msa0577540:intron | 30.0% | |
| ATTCTTGATCACTTAGTTGA+GGG | - | chr4_1:81877898-81877917 | None:intergenic | 30.0% | |
| AATTCTTGATCACTTAGTTG+AGG | - | chr4_1:81877899-81877918 | None:intergenic | 30.0% | |
| ACTAAGTGATCAAGAATTGT+TGG | + | chr4_1:81877901-81877920 | Msa0577540:intron | 30.0% | |
| GAAAAGAGGATAGAAAATGA+AGG | - | chr4_1:81877957-81877976 | None:intergenic | 30.0% | |
| TGATAAAAACATGCAACTGT+AGG | - | chr4_1:81878060-81878079 | None:intergenic | 30.0% | |
| ATATATGTGTTTGTGACTTG+TGG | + | chr4_1:81878309-81878328 | Msa0577540:intron | 30.0% | |
| TTCAACGTGTGATGATAAAA+GGG | - | chr4_1:81878531-81878550 | None:intergenic | 30.0% | |
| ATTCAACGTGTGATGATAAA+AGG | - | chr4_1:81878532-81878551 | None:intergenic | 30.0% | |
| ! | TAATTTGTCACCAATGTGTA+TGG | + | chr4_1:81878857-81878876 | Msa0577540:intron | 30.0% |
| !!! | CCCTCAATATAAGCTTTTTT+TGG | - | chr4_1:81879025-81879044 | None:intergenic | 30.0% |
| AAAAAGCTTATATTGAGGGA+CGG | + | chr4_1:81879026-81879045 | Msa0577540:intron | 30.0% | |
| !!! | GATTTTGGGATGTGATATTT+TGG | + | chr4_1:81879112-81879131 | Msa0577540:intron | 30.0% |
| AATATACAGAATGAGCTTCT+TGG | - | chr4_1:81879213-81879232 | None:intergenic | 30.0% | |
| TAATTGTACTATACGGAAGT+CGG | + | chr4_1:81879770-81879789 | Msa0577540:CDS | 30.0% | |
| AGTTTGCATTGTTGGATTAT+TGG | + | chr4_1:81880084-81880103 | Msa0577540:CDS | 30.0% | |
| AGTACAGTATACAAAATGAG+TGG | + | chr4_1:81880230-81880249 | Msa0577540:three_prime_UTR | 30.0% | |
| ACTAAAATATCTCCAGAACT+AGG | - | chr4_1:81880298-81880317 | None:intergenic | 30.0% | |
| !!! | TTCTGGAGATATTTTAGTGT+TGG | + | chr4_1:81880300-81880319 | Msa0577540:three_prime_UTR | 30.0% |
| !!! | TCTGGAGATATTTTAGTGTT+GGG | + | chr4_1:81880301-81880320 | Msa0577540:three_prime_UTR | 30.0% |
| AGTGAAGAAGATACTGGAAA+TGG | - | chr4_1:81874560-81874579 | None:intergenic | 35.0% | |
| TTGAGGAATGGAAGATAAGA+GGG | - | chr4_1:81874586-81874605 | None:intergenic | 35.0% | |
| ATTGAGGAATGGAAGATAAG+AGG | - | chr4_1:81874587-81874606 | None:intergenic | 35.0% | |
| GAAGGTGGTGAATATTAGAT+CGG | - | chr4_1:81874670-81874689 | None:intergenic | 35.0% | |
| GAAATCGAAATGAAAGTTCG+AGG | - | chr4_1:81874692-81874711 | None:intergenic | 35.0% | |
| GAAAAGGGTAACATAAACTG+CGG | - | chr4_1:81874726-81874745 | None:intergenic | 35.0% | |
| !!! | CTTTGGTGTTTTTGCTGAAA+AGG | - | chr4_1:81874742-81874761 | None:intergenic | 35.0% |
| TCAACGAAAGGAGTTAACTT+TGG | - | chr4_1:81874759-81874778 | None:intergenic | 35.0% | |
| CAATGTATGGTTAGGGTTAA+AGG | - | chr4_1:81874783-81874802 | None:intergenic | 35.0% | |
| !!! | TTCATTTTTGAGTATGGAGG+TGG | + | chr4_1:81874855-81874874 | Msa0577540:exon | 35.0% |
| CATTGGAATCTTTGGGTAAA+GGG | + | chr4_1:81874899-81874918 | Msa0577540:CDS | 35.0% | |
| TTTGGGTAAAGGGTTTGATT+TGG | + | chr4_1:81874909-81874928 | Msa0577540:CDS | 35.0% | |
| !!! | TGGCTAGTGATTTTAGGTTA+AGG | + | chr4_1:81874929-81874948 | Msa0577540:CDS | 35.0% |
| !!! | AAGAGGGATATTTTGATTCC+TGG | + | chr4_1:81875021-81875040 | Msa0577540:CDS | 35.0% |
| ! | AAGGTGTTTCGGAGAATATT+CGG | + | chr4_1:81875067-81875086 | Msa0577540:CDS | 35.0% |
| !! | GAGAATATTCGGTGTGATAA+AGG | + | chr4_1:81875078-81875097 | Msa0577540:CDS | 35.0% |
| !! | GAATATTCGGTGTGATAAAG+GGG | + | chr4_1:81875080-81875099 | Msa0577540:CDS | 35.0% |
| GTTAATGCAGTTCACACATT+TGG | + | chr4_1:81875386-81875405 | Msa0577540:intron | 35.0% | |
| GTACAAGGAAAAATTCCTTC+TGG | + | chr4_1:81875738-81875757 | Msa0577540:CDS | 35.0% | |
| ! | AGAGCATTAAAATAGCCAGA+AGG | - | chr4_1:81875756-81875775 | None:intergenic | 35.0% |
| ! | TTTTTGATATGAGCGGTGAT+TGG | + | chr4_1:81875775-81875794 | Msa0577540:CDS | 35.0% |
| AGCAAGATATTTGATGTCAG+CGG | - | chr4_1:81875811-81875830 | None:intergenic | 35.0% | |
| TGTCTAGGTAAACAAACACT+AGG | + | chr4_1:81875940-81875959 | Msa0577540:intron | 35.0% | |
| ATTCTACATCAGGAAAACAC+AGG | - | chr4_1:81875999-81876018 | None:intergenic | 35.0% | |
| GAGACATGTTATTCTACATC+AGG | - | chr4_1:81876009-81876028 | None:intergenic | 35.0% | |
| ! | TCAAGAGAAGTAATGGAATG+CGG | - | chr4_1:81876031-81876050 | None:intergenic | 35.0% |
| GAAGCACACAAGCAAAAAAA+AGG | - | chr4_1:81876079-81876098 | None:intergenic | 35.0% | |
| AACTTAAAAGTCTGTCCACA+AGG | - | chr4_1:81876209-81876228 | None:intergenic | 35.0% | |
| AGCATAGTAACTGAAGTTTC+CGG | + | chr4_1:81876309-81876328 | Msa0577540:intron | 35.0% | |
| ! | TGATGCTGATTGAGTTTGTT+AGG | + | chr4_1:81876367-81876386 | Msa0577540:intron | 35.0% |
| GATGCAATCTCTCTATATGT+AGG | + | chr4_1:81876652-81876671 | Msa0577540:intron | 35.0% | |
| TGAAATACTGGTAAACTGTG+TGG | - | chr4_1:81876714-81876733 | None:intergenic | 35.0% | |
| !! | GCTAGATGTTTCTGAAATAC+TGG | - | chr4_1:81876726-81876745 | None:intergenic | 35.0% |
| GTATTGCTTTATCTTGGAAC+AGG | + | chr4_1:81876817-81876836 | Msa0577540:intron | 35.0% | |
| ATTATTTGCTCCAAAAGAGG+AGG | + | chr4_1:81876848-81876867 | Msa0577540:CDS | 35.0% | |
| AACTTGAATATGATCGCTTC+AGG | - | chr4_1:81876926-81876945 | None:intergenic | 35.0% | |
| CATTTATCCATACCCAGTTT+AGG | + | chr4_1:81877054-81877073 | Msa0577540:intron | 35.0% | |
| ! | CTGTTCCCTAGTTCATATTT+TGG | - | chr4_1:81877122-81877141 | None:intergenic | 35.0% |
| CAAAATATGAACTAGGGAAC+AGG | + | chr4_1:81877120-81877139 | Msa0577540:intron | 35.0% | |
| TATTGTAAATCTTCGGGAGA+TGG | - | chr4_1:81877425-81877444 | None:intergenic | 35.0% | |
| AGTTTCAAATTCCAAGGCAA+TGG | + | chr4_1:81877453-81877472 | Msa0577540:CDS | 35.0% | |
| GTTTCAAATTCCAAGGCAAT+GGG | + | chr4_1:81877454-81877473 | Msa0577540:CDS | 35.0% | |
| GTAGAGCTAATATGAAGCTT+TGG | - | chr4_1:81877560-81877579 | None:intergenic | 35.0% | |
| TTAGCTAAACTCTCCTGTTT+GGG | + | chr4_1:81877590-81877609 | Msa0577540:intron | 35.0% | |
| ! | TTCAATGAGTTGAGGAAAAG+AGG | - | chr4_1:81877971-81877990 | None:intergenic | 35.0% |
| TCCTCAACTCATTGAAGTTT+AGG | + | chr4_1:81877975-81877994 | Msa0577540:intron | 35.0% | |
| ACCTAAACTTCAATGAGTTG+AGG | - | chr4_1:81877979-81877998 | None:intergenic | 35.0% | |
| CGTGAATACAAAACTCAAGA+TGG | + | chr4_1:81878223-81878242 | Msa0577540:intron | 35.0% | |
| ! | GTGTTTGCTACGAACAATAA+TGG | - | chr4_1:81878407-81878426 | None:intergenic | 35.0% |
| TCAACGTGTGATGATAAAAG+GGG | - | chr4_1:81878530-81878549 | None:intergenic | 35.0% | |
| TCATCACACGTTGAATATAC+TGG | + | chr4_1:81878536-81878555 | Msa0577540:intron | 35.0% | |
| ATGTGCTGCATAACTTTGTA+GGG | + | chr4_1:81879258-81879277 | Msa0577540:intron | 35.0% | |
| !! | GCACGACCTTTCATTTTTAT+AGG | + | chr4_1:81879328-81879347 | Msa0577540:intron | 35.0% |
| ! | GGTATTTTGTACAAAATGGC+AGG | + | chr4_1:81879380-81879399 | Msa0577540:intron | 35.0% |
| ! | ATTTTGTACAAAATGGCAGG+TGG | + | chr4_1:81879383-81879402 | Msa0577540:intron | 35.0% |
| ! | AAGAGAGGATCATCTTGTTT+GGG | - | chr4_1:81879503-81879522 | None:intergenic | 35.0% |
| AACTCTGGCATTTATCCTAA+CGG | + | chr4_1:81879915-81879934 | Msa0577540:CDS | 35.0% | |
| ! | GTTGGATTATTGGTGATTCT+AGG | + | chr4_1:81880094-81880113 | Msa0577540:exon | 35.0% |
| GCAACACTAAATGATAACCA+CGG | - | chr4_1:81880150-81880169 | None:intergenic | 35.0% | |
| ! | ACTGTACAAAGCCTTTTGAA+AGG | - | chr4_1:81880213-81880232 | None:intergenic | 35.0% |
| TTAGGATATACTCCTAGTTC+TGG | + | chr4_1:81880283-81880302 | Msa0577540:three_prime_UTR | 35.0% | |
| AAAGGGCGAATTGTAATGAT+AGG | + | chr4_1:81880369-81880388 | Msa0577540:three_prime_UTR | 35.0% | |
| AAATGAAAGTTCGAGGAAGG+TGG | - | chr4_1:81874685-81874704 | None:intergenic | 40.0% | |
| TCGAAATGAAAGTTCGAGGA+AGG | - | chr4_1:81874688-81874707 | None:intergenic | 40.0% | |
| ! | AGAGTGGCATTGGAATCTTT+GGG | + | chr4_1:81874892-81874911 | Msa0577540:CDS | 40.0% |
| GCATTGGAATCTTTGGGTAA+AGG | + | chr4_1:81874898-81874917 | Msa0577540:CDS | 40.0% | |
| !!! | GATATTTTGATTCCTGGAGC+TGG | + | chr4_1:81875027-81875046 | Msa0577540:CDS | 40.0% |
| GTGATAAAGGGGATCGAATT+CGG | + | chr4_1:81875091-81875110 | Msa0577540:CDS | 40.0% | |
| ACTTCCTCTTGAAGTACAAG+CGG | - | chr4_1:81875882-81875901 | None:intergenic | 40.0% | |
| GTTTACCTAGACAATGAAGC+TGG | - | chr4_1:81875933-81875952 | None:intergenic | 40.0% | |
| TTCTTCTTACTTTCGGCACA+AGG | + | chr4_1:81876174-81876193 | Msa0577540:intron | 40.0% | |
| ACAAGGCTCAAATTACCTTG+TGG | + | chr4_1:81876191-81876210 | Msa0577540:intron | 40.0% | |
| CTATGTGAGTACCATATGTC+TGG | - | chr4_1:81876402-81876421 | None:intergenic | 40.0% | |
| GACATATGGTACTCACATAG+TGG | + | chr4_1:81876402-81876421 | Msa0577540:CDS | 40.0% | |
| TATGGTACTCACATAGTGGT+AGG | + | chr4_1:81876406-81876425 | Msa0577540:CDS | 40.0% | |
| CATTCATCAAAGATTCCTCC+CGG | + | chr4_1:81876472-81876491 | Msa0577540:CDS | 40.0% | |
| TCTTCCTCTGTAGTGAAGAA+GGG | - | chr4_1:81876555-81876574 | None:intergenic | 40.0% | |
| TTCTTCACTACAGAGGAAGA+CGG | + | chr4_1:81876555-81876574 | Msa0577540:CDS | 40.0% | |
| TGGTGTTTGATTGCATCACA+CGG | - | chr4_1:81876694-81876713 | None:intergenic | 40.0% | |
| TCAAGCACAGTCACTCAAAT+TGG | + | chr4_1:81876879-81876898 | Msa0577540:CDS | 40.0% | |
| !! | GCTTCATATTAGCTCTACAG+AGG | + | chr4_1:81877562-81877581 | Msa0577540:CDS | 40.0% |
| GTTAGCTAAACTCTCCTGTT+TGG | + | chr4_1:81877589-81877608 | Msa0577540:intron | 40.0% | |
| GAATGCTTGTTTACCCAAAC+AGG | - | chr4_1:81877606-81877625 | None:intergenic | 40.0% | |
| GTACAGTACAGTTCAACACA+TGG | - | chr4_1:81877634-81877653 | None:intergenic | 40.0% | |
| ! | AGATTTTCTCCGCGTATGTA+TGG | + | chr4_1:81877720-81877739 | Msa0577540:intron | 40.0% |
| GATAAGTGACGACGCAAAAA+TGG | - | chr4_1:81877831-81877850 | None:intergenic | 40.0% | |
| !! | AGTTTTGTATTCACGCATGC+AGG | - | chr4_1:81878218-81878237 | None:intergenic | 40.0% |
| !! | ATAACTAGTTGATGGGTCGT+AGG | - | chr4_1:81878483-81878502 | None:intergenic | 40.0% |
| !! | TAAGCTTGTCTTTCTGGTTC+AGG | - | chr4_1:81878625-81878644 | None:intergenic | 40.0% |
| GAACCAGAAAGACAAGCTTA+AGG | + | chr4_1:81878625-81878644 | Msa0577540:intron | 40.0% | |
| TCAGCTATGGTACTTTGACT+AGG | - | chr4_1:81878691-81878710 | None:intergenic | 40.0% | |
| GTACTTATATTTAGGGACGG+AGG | - | chr4_1:81878784-81878803 | None:intergenic | 40.0% | |
| TTTGCTACGTCCATACACAT+TGG | - | chr4_1:81878870-81878889 | None:intergenic | 40.0% | |
| TATGGACGTAGCAAAATTGC+TGG | + | chr4_1:81878875-81878894 | Msa0577540:intron | 40.0% | |
| ATGGACGTAGCAAAATTGCT+GGG | + | chr4_1:81878876-81878895 | Msa0577540:intron | 40.0% | |
| TGTAAGTTTCTGATTGCCTC+TGG | + | chr4_1:81879088-81879107 | Msa0577540:intron | 40.0% | |
| ! | TGATTGCCTCTGGTGATTTT+GGG | + | chr4_1:81879098-81879117 | Msa0577540:intron | 40.0% |
| CATGTGCTGCATAACTTTGT+AGG | + | chr4_1:81879257-81879276 | Msa0577540:intron | 40.0% | |
| AGCAGATAAAAGAAGAGTGG+AGG | - | chr4_1:81879306-81879325 | None:intergenic | 40.0% | |
| CCAAGCAGATAAAAGAAGAG+TGG | - | chr4_1:81879309-81879328 | None:intergenic | 40.0% | |
| ! | CCACTCTTCTTTTATCTGCT+TGG | + | chr4_1:81879306-81879325 | Msa0577540:intron | 40.0% |
| GAAGAGAGGATCATCTTGTT+TGG | - | chr4_1:81879504-81879523 | None:intergenic | 40.0% | |
| !! | TGGTTCTAGGAATTGGTTAC+TGG | - | chr4_1:81879583-81879602 | None:intergenic | 40.0% |
| !! | ATCTGACTGGTTCTAGGAAT+TGG | - | chr4_1:81879590-81879609 | None:intergenic | 40.0% |
| AATTCCTAGAACCAGTCAGA+TGG | + | chr4_1:81879589-81879608 | Msa0577540:CDS | 40.0% | |
| CGCAATCATTCAACCAGTTA+GGG | - | chr4_1:81879656-81879675 | None:intergenic | 40.0% | |
| CCTAACTGGTTGAATGATTG+CGG | + | chr4_1:81879654-81879673 | Msa0577540:CDS | 40.0% | |
| !! | GGAGGTGTTTACATTGTAAC+TGG | + | chr4_1:81879675-81879694 | Msa0577540:CDS | 40.0% |
| ! | GATGATTTTCTTGAAGCCTC+TGG | - | chr4_1:81879810-81879829 | None:intergenic | 40.0% |
| ACTCTGGCATTTATCCTAAC+GGG | + | chr4_1:81879916-81879935 | Msa0577540:CDS | 40.0% | |
| GCAGGTAAAGTTTGCATTGT+TGG | + | chr4_1:81880076-81880095 | Msa0577540:CDS | 40.0% | |
| ! | GGATTATTGGTGATTCTAGG+TGG | + | chr4_1:81880097-81880116 | Msa0577540:exon | 40.0% |
| CTGCAAATCAAAATGGATCC+AGG | + | chr4_1:81880409-81880428 | Msa0577540:three_prime_UTR | 40.0% | |
| ATTATCATAGCTATGCTGCC+TGG | - | chr4_1:81880430-81880449 | None:intergenic | 40.0% | |
| GGGTGAAGTGAAGAAGATAC+TGG | - | chr4_1:81874566-81874585 | None:intergenic | 45.0% | |
| AGGGTTAAAGGGTCAACGAA+AGG | - | chr4_1:81874771-81874790 | None:intergenic | 45.0% | |
| TTTGAGTATGGAGGTGGAAG+AGG | + | chr4_1:81874861-81874880 | Msa0577540:exon | 45.0% | |
| TTGAGTATGGAGGTGGAAGA+GGG | + | chr4_1:81874862-81874881 | Msa0577540:exon | 45.0% | |
| ! | GAGAGTGGCATTGGAATCTT+TGG | + | chr4_1:81874891-81874910 | Msa0577540:CDS | 45.0% |
| AGGTTTGCAAAGGGAATTCG+TGG | + | chr4_1:81874949-81874968 | Msa0577540:CDS | 45.0% | |
| GGTTTGCAAAGGGAATTCGT+GGG | + | chr4_1:81874950-81874969 | Msa0577540:CDS | 45.0% | |
| !!! | ATTTTGATTCCTGGAGCTGG+TGG | + | chr4_1:81875030-81875049 | Msa0577540:CDS | 45.0% |
| GGTGGAGCTACTGTAATCAA+AGG | + | chr4_1:81875048-81875067 | Msa0577540:CDS | 45.0% | |
| TTCTCCGCTTGTACTTCAAG+AGG | + | chr4_1:81875875-81875894 | Msa0577540:CDS | 45.0% | |
| !! | GCTGATTGAGTTTGTTAGGC+AGG | + | chr4_1:81876371-81876390 | Msa0577540:intron | 45.0% |
| TACTCACATAGTGGTAGGCA+TGG | + | chr4_1:81876411-81876430 | Msa0577540:CDS | 45.0% | |
| TAAATGCCTCCTGACATCAC+CGG | - | chr4_1:81876494-81876513 | None:intergenic | 45.0% | |
| !! | TGATGTCAGGAGGCATTTAG+AGG | + | chr4_1:81876495-81876514 | Msa0577540:CDS | 45.0% |
| !! | AGGAGGCATTTAGAGGATCT+TGG | + | chr4_1:81876502-81876521 | Msa0577540:CDS | 45.0% |
| GTCTTCCTCTGTAGTGAAGA+AGG | - | chr4_1:81876556-81876575 | None:intergenic | 45.0% | |
| GACGGCAGATAGCAAACATA+AGG | + | chr4_1:81876573-81876592 | Msa0577540:CDS | 45.0% | |
| TCTCTATATGTAGGTCCCAG+AGG | + | chr4_1:81876661-81876680 | Msa0577540:intron | 45.0% | |
| TCACACGGTTAAAGACCTCT+GGG | - | chr4_1:81876679-81876698 | None:intergenic | 45.0% | |
| ATCACACGGTTAAAGACCTC+TGG | - | chr4_1:81876680-81876699 | None:intergenic | 45.0% | |
| ! | GAACACATCTCCTCCTCTTT+TGG | - | chr4_1:81876861-81876880 | None:intergenic | 45.0% |
| ATGATCGCTTCAGGATTCGA+AGG | - | chr4_1:81876917-81876936 | None:intergenic | 45.0% | |
| TGACTAAGATAGCCACTTCC+AGG | - | chr4_1:81876980-81876999 | None:intergenic | 45.0% | |
| CTGTGCAAGAAGTGATTGCT+TGG | - | chr4_1:81877333-81877352 | None:intergenic | 45.0% | |
| AGAGGCAGTTCGCAAAACAT+GGG | - | chr4_1:81877482-81877501 | None:intergenic | 45.0% | |
| GAATTGCAGTGAAAGGGAAG+AGG | - | chr4_1:81877525-81877544 | None:intergenic | 45.0% | |
| GCAGCAGAATTGCAGTGAAA+GGG | - | chr4_1:81877531-81877550 | None:intergenic | 45.0% | |
| AGCAGCAGAATTGCAGTGAA+AGG | - | chr4_1:81877532-81877551 | None:intergenic | 45.0% | |
| TTCACTGCAATTCTGCTGCT+TGG | + | chr4_1:81877532-81877551 | Msa0577540:CDS | 45.0% | |
| ! | TCACTGCAATTCTGCTGCTT+GGG | + | chr4_1:81877533-81877552 | Msa0577540:CDS | 45.0% |
| TTTCTCCGCGTATGTATGGT+TGG | + | chr4_1:81877724-81877743 | Msa0577540:intron | 45.0% | |
| TATCGCCAACCATACATACG+CGG | - | chr4_1:81877732-81877751 | None:intergenic | 45.0% | |
| TGTATGGTTGGCGATATAGC+TGG | + | chr4_1:81877736-81877755 | Msa0577540:intron | 45.0% | |
| GTATGGTTGGCGATATAGCT+GGG | + | chr4_1:81877737-81877756 | Msa0577540:intron | 45.0% | |
| TATGGTTGGCGATATAGCTG+GGG | + | chr4_1:81877738-81877757 | Msa0577540:intron | 45.0% | |
| AGTGACGACGCAAAAATGGT+TGG | - | chr4_1:81877827-81877846 | None:intergenic | 45.0% | |
| GTGCCTTAAGCTTGTCTTTC+TGG | - | chr4_1:81878631-81878650 | None:intergenic | 45.0% | |
| GAAAGACAAGCTTAAGGCAC+CGG | + | chr4_1:81878631-81878650 | Msa0577540:intron | 45.0% | |
| TGTGTGCCTCAACCAATAAG+AGG | + | chr4_1:81878657-81878676 | Msa0577540:intron | 45.0% | |
| ! | CTAGCACCTCTTATTGGTTG+AGG | - | chr4_1:81878666-81878685 | None:intergenic | 45.0% |
| TAGGCACTAGCACCTCTTAT+TGG | - | chr4_1:81878672-81878691 | None:intergenic | 45.0% | |
| TACGGTAGATGATGTGCTTC+TGG | + | chr4_1:81879059-81879078 | Msa0577540:intron | 45.0% | |
| ! | CTGATTGCCTCTGGTGATTT+TGG | + | chr4_1:81879097-81879116 | Msa0577540:intron | 45.0% |
| TCACATCCCAAAATCACCAG+AGG | - | chr4_1:81879107-81879126 | None:intergenic | 45.0% | |
| ! | GCTTCTTGGCTCTTAGATGT+TGG | - | chr4_1:81879199-81879218 | None:intergenic | 45.0% |
| GGTGGTAAGTGAACAGAAAC+CGG | + | chr4_1:81879401-81879420 | Msa0577540:intron | 45.0% | |
| ! | AGAGGATCATCTTGTTTGGG+AGG | - | chr4_1:81879500-81879519 | None:intergenic | 45.0% |
| CCACATAGATTGTATGCTCG+GGG | - | chr4_1:81879538-81879557 | None:intergenic | 45.0% | |
| GCCACATAGATTGTATGCTC+GGG | - | chr4_1:81879539-81879558 | None:intergenic | 45.0% | |
| CGCCACATAGATTGTATGCT+CGG | - | chr4_1:81879540-81879559 | None:intergenic | 45.0% | |
| AGCATACAATCTATGTGGCG+AGG | + | chr4_1:81879540-81879559 | Msa0577540:CDS | 45.0% | |
| ! | TCTTCCATCTGACTGGTTCT+AGG | - | chr4_1:81879596-81879615 | None:intergenic | 45.0% |
| GAGAATCTCTTCCATCTGAC+TGG | - | chr4_1:81879603-81879622 | None:intergenic | 45.0% | |
| CCGCAATCATTCAACCAGTT+AGG | - | chr4_1:81879657-81879676 | None:intergenic | 45.0% | |
| AACTGGTTGAATGATTGCGG+AGG | + | chr4_1:81879657-81879676 | Msa0577540:CDS | 45.0% | |
| GTGCACAGCTCATTATCAGA+GGG | + | chr4_1:81879697-81879716 | Msa0577540:CDS | 45.0% | |
| AGCTCATTATCAGAGGGAGT+TGG | + | chr4_1:81879703-81879722 | Msa0577540:CDS | 45.0% | |
| !!! | CGCAGATGAAGCACGTTTTT+TGG | - | chr4_1:81879729-81879748 | None:intergenic | 45.0% |
| TACTATACGGAAGTCGGAGT+GGG | + | chr4_1:81879776-81879795 | Msa0577540:CDS | 45.0% | |
| ! | TTTTCTTGAAGCCTCTGGTG+CGG | - | chr4_1:81879805-81879824 | None:intergenic | 45.0% |
| ATGCCAGAGTTAAGTGCAGT+TGG | - | chr4_1:81879906-81879925 | None:intergenic | 45.0% | |
| AGTAGTTTACTCGAGCGAAC+AGG | - | chr4_1:81879951-81879970 | None:intergenic | 45.0% | |
| TAAATACGTCGAGACAGCTG+AGG | + | chr4_1:81879971-81879990 | Msa0577540:CDS | 45.0% | |
| TAGCAGCTGTAACCAACCAA+TGG | - | chr4_1:81880025-81880044 | None:intergenic | 45.0% | |
| CTGAAGTGATAAGATCACCG+TGG | + | chr4_1:81880130-81880149 | Msa0577540:three_prime_UTR | 45.0% | |
| AATGAGTGGCTGTTGACATG+AGG | + | chr4_1:81880244-81880263 | Msa0577540:three_prime_UTR | 45.0% | |
| !! | TTATTATTATTATCATATTA+TGG | - | chr4_1:81879174-81879193 | None:intergenic | 5.0% |
| !! | GGAAGAGGGTATTGAGAGAG+TGG | + | chr4_1:81874876-81874895 | Msa0577540:CDS | 50.0% |
| !! | GGGTATTGAGAGAGTGGCAT+TGG | + | chr4_1:81874882-81874901 | Msa0577540:CDS | 50.0% |
| CAGCAACTCAGACATCTGCA+AGG | - | chr4_1:81875703-81875722 | None:intergenic | 50.0% | |
| ATTTGATGTCAGCGGCGTCA+CGG | - | chr4_1:81875803-81875822 | None:intergenic | 50.0% | |
| ! | AGAAATCGGTTCCAGCTCAG+TGG | + | chr4_1:81875904-81875923 | Msa0577540:CDS | 50.0% |
| ! | GAAATCGGTTCCAGCTCAGT+GGG | + | chr4_1:81875905-81875924 | Msa0577540:CDS | 50.0% |
| GGGATCCAGCTTCATTGTCT+AGG | + | chr4_1:81875925-81875944 | Msa0577540:CDS | 50.0% | |
| GGCAGGTTCATCCAGACATA+TGG | + | chr4_1:81876388-81876407 | Msa0577540:intron | 50.0% | |
| ATAGTGGTAGGCATGGCTGT+TGG | + | chr4_1:81876418-81876437 | Msa0577540:CDS | 50.0% | |
| AAATGCCTCCTGACATCACC+GGG | - | chr4_1:81876493-81876512 | None:intergenic | 50.0% | |
| GAAGCCCTTCTTCACTACAG+AGG | + | chr4_1:81876548-81876567 | Msa0577540:CDS | 50.0% | |
| CCAGTCAGAAGCGAGGAAAT+CGG | - | chr4_1:81876953-81876972 | None:intergenic | 50.0% | |
| AGGAATTCCAGTCAGAAGCG+AGG | - | chr4_1:81876960-81876979 | None:intergenic | 50.0% | |
| TCGCTTCTGACTGGAATTCC+TGG | + | chr4_1:81876959-81876978 | Msa0577540:CDS | 50.0% | |
| CTGACTGGAATTCCTGGAAG+TGG | + | chr4_1:81876965-81876984 | Msa0577540:CDS | 50.0% | |
| GAGAGGCAGTTCGCAAAACA+TGG | - | chr4_1:81877483-81877502 | None:intergenic | 50.0% | |
| ! | TGTTTTGCGAACTGCCTCTC+AGG | + | chr4_1:81877483-81877502 | Msa0577540:CDS | 50.0% |
| ATGGTTGGCGATATAGCTGG+GGG | + | chr4_1:81877739-81877758 | Msa0577540:intron | 50.0% | |
| TTGGTTGAGGCACACACATC+CGG | - | chr4_1:81878653-81878672 | None:intergenic | 50.0% | |
| AGTACCATAGCTGAAGCCGT+TGG | + | chr4_1:81878697-81878716 | Msa0577540:intron | 50.0% | |
| AGGGACGGAGTCGTGATTTA+CGG | + | chr4_1:81879041-81879060 | Msa0577540:intron | 50.0% | |
| GGTAAGTGAACAGAAACCGG+TGG | + | chr4_1:81879404-81879423 | Msa0577540:CDS | 50.0% | |
| AGTGAACAGAAACCGGTGGT+TGG | + | chr4_1:81879408-81879427 | Msa0577540:CDS | 50.0% | |
| !!! | TGTCACTTTTCTTGCCCTCC+AGG | - | chr4_1:81879446-81879465 | None:intergenic | 50.0% |
| CCCCGAGCATACAATCTATG+TGG | + | chr4_1:81879535-81879554 | Msa0577540:CDS | 50.0% | |
| TCGTCAAGCATGACCCTAAC+TGG | + | chr4_1:81879640-81879659 | Msa0577540:CDS | 50.0% | |
| GGTGCACAGCTCATTATCAG+AGG | + | chr4_1:81879696-81879715 | Msa0577540:CDS | 50.0% | |
| GTACTATACGGAAGTCGGAG+TGG | + | chr4_1:81879775-81879794 | Msa0577540:CDS | 50.0% | |
| ACTATACGGAAGTCGGAGTG+GGG | + | chr4_1:81879777-81879796 | Msa0577540:CDS | 50.0% | |
| GCTCCAACTGCACTTAACTC+TGG | + | chr4_1:81879900-81879919 | Msa0577540:CDS | 50.0% | |
| ! | GAGACAGCTGAGGTTTTACG+TGG | + | chr4_1:81879981-81880000 | Msa0577540:CDS | 50.0% |
| !! | AATGGCCAGGAGCATCATGA+GGG | - | chr4_1:81880007-81880026 | None:intergenic | 50.0% |
| AGCTGCTAAGCTTGTCACTG+AGG | + | chr4_1:81880037-81880056 | Msa0577540:CDS | 50.0% | |
| GCTGCTAAGCTTGTCACTGA+GGG | + | chr4_1:81880038-81880057 | Msa0577540:CDS | 50.0% | |
| GTCACTGAGGGTGGTAAGAT+AGG | + | chr4_1:81880050-81880069 | Msa0577540:CDS | 50.0% | |
| GGGTGGTAAGATAGGATTGC+AGG | + | chr4_1:81880058-81880077 | Msa0577540:CDS | 50.0% | |
| GCAAAGGGAATTCGTGGGAG+TGG | + | chr4_1:81874955-81874974 | Msa0577540:CDS | 55.0% | |
| AGATTCCTCCCGGTGATGTC+AGG | + | chr4_1:81876482-81876501 | Msa0577540:CDS | 55.0% | |
| CCGATTTCCTCGCTTCTGAC+TGG | + | chr4_1:81876950-81876969 | Msa0577540:CDS | 55.0% | |
| AACTGCCTCTCAGGCATCAG+CGG | + | chr4_1:81877492-81877511 | Msa0577540:CDS | 55.0% | |
| TTTCTCCGCTGATGCCTGAG+AGG | - | chr4_1:81877500-81877519 | None:intergenic | 55.0% | |
| TACAAGCGAAGGCCAACCAC+CGG | - | chr4_1:81879423-81879442 | None:intergenic | 55.0% | |
| AGTGCAGTTGGAGCCTGCTT+TGG | - | chr4_1:81879894-81879913 | None:intergenic | 55.0% | |
| TTACTCGAGCGAACAGGCAC+AGG | - | chr4_1:81879945-81879964 | None:intergenic | 55.0% | |
| !! | CAATGGCCAGGAGCATCATG+AGG | - | chr4_1:81880008-81880027 | None:intergenic | 55.0% |
| CTCATGATGCTCCTGGCCAT+TGG | + | chr4_1:81880006-81880025 | Msa0577540:CDS | 55.0% | |
| TGATGCTCCTGGCCATTGGT+TGG | + | chr4_1:81880010-81880029 | Msa0577540:CDS | 55.0% | |
| GCTGTAACCAACCAATGGCC+AGG | - | chr4_1:81880020-81880039 | None:intergenic | 55.0% | |
| GCTAAGCTTGTCACTGAGGG+TGG | + | chr4_1:81880041-81880060 | Msa0577540:CDS | 55.0% | |
| ACAGTAGCTCCACCAGCTCC+AGG | - | chr4_1:81875042-81875061 | None:intergenic | 60.0% | |
| GAAGCTGGATCCCACTGAGC+TGG | - | chr4_1:81875918-81875937 | None:intergenic | 60.0% | |
| GTGGTAGGCATGGCTGTTGG+AGG | + | chr4_1:81876421-81876440 | Msa0577540:CDS | 60.0% | |
| TTCCTCCCGGTGATGTCAGG+AGG | + | chr4_1:81876485-81876504 | Msa0577540:CDS | 60.0% | |
| AACATGGGCGCCCATTGCCT+TGG | - | chr4_1:81877467-81877486 | None:intergenic | 60.0% | |
| GCAGCCAACGGCTTCAGCTA+TGG | - | chr4_1:81878704-81878723 | None:intergenic | 60.0% | |
| GCCACGTCTAACGCAGCCAA+CGG | - | chr4_1:81878716-81878735 | None:intergenic | 60.0% | |
| !! | GGTTGGCCTTCGCTTGTACC+TGG | + | chr4_1:81879425-81879444 | Msa0577540:CDS | 60.0% |
| TGGCCTTCGCTTGTACCTGG+AGG | + | chr4_1:81879428-81879447 | Msa0577540:CDS | 60.0% | |
| GGCCTTCGCTTGTACCTGGA+GGG | + | chr4_1:81879429-81879448 | Msa0577540:CDS | 60.0% | |
| TGCCCTCCAGGTACAAGCGA+AGG | - | chr4_1:81879434-81879453 | None:intergenic | 60.0% | |
| TGCTGCTGCTCCACCAAAGC+AGG | + | chr4_1:81879878-81879897 | Msa0577540:CDS | 60.0% | |
| GCAGTTGGAGCCTGCTTTGG+TGG | - | chr4_1:81879891-81879910 | None:intergenic | 60.0% | |
| TGCCTCCTGACATCACCGGG+AGG | - | chr4_1:81876490-81876509 | None:intergenic | 65.0% | |
| ! | GCCGTTGGCTGCGTTAGACG+TGG | + | chr4_1:81878712-81878731 | Msa0577540:intron | 65.0% |
| ACAGGCACAGGTGGCCCGTT+AGG | - | chr4_1:81879933-81879952 | None:intergenic | 65.0% | |
| CTCGAGCGAACAGGCACAGG+TGG | - | chr4_1:81879942-81879961 | None:intergenic | 65.0% | |
| CGTGGCCCTCATGATGCTCC+TGG | + | chr4_1:81879999-81880018 | Msa0577540:CDS | 65.0% | |
| !!! | GGAGTGGGGCGCCGCACCAG+AGG | + | chr4_1:81879791-81879810 | Msa0577540:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81874525 | 81880473 | 81874525 | ID=Msa0577540;Name=Msa0577540 |
| chr4_1 | mRNA | 81874525 | 81880473 | 81874525 | ID=Msa0577540-mRNA-1;Parent=Msa0577540;Name=Msa0577540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=343|1|1|1|1|1|7|364|617 |
| chr4_1 | exon | 81874525 | 81875143 | 81874525 | ID=Msa0577540-mRNA-1:exon:29541;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81875708 | 81875946 | 81875708 | ID=Msa0577540-mRNA-1:exon:29542;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81876393 | 81876594 | 81876393 | ID=Msa0577540-mRNA-1:exon:29543;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81876674 | 81876751 | 81876674 | ID=Msa0577540-mRNA-1:exon:29544;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81876839 | 81877022 | 81876839 | ID=Msa0577540-mRNA-1:exon:29545;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81877417 | 81877583 | 81877417 | ID=Msa0577540-mRNA-1:exon:29546;Parent=Msa0577540-mRNA-1 |
| chr4_1 | exon | 81879402 | 81880473 | 81879402 | ID=Msa0577540-mRNA-1:exon:29547;Parent=Msa0577540-mRNA-1 |
| chr4_1 | five_prime_UTR | 81874525 | 81874867 | 81874525 | ID=Msa0577540-mRNA-1:five_prime_utr;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81874868 | 81875143 | 81874868 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81875708 | 81875946 | 81875708 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81876393 | 81876594 | 81876393 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81876674 | 81876751 | 81876674 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81876839 | 81877022 | 81876839 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81877417 | 81877583 | 81877417 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | CDS | 81879402 | 81880109 | 81879402 | ID=Msa0577540-mRNA-1:cds;Parent=Msa0577540-mRNA-1 |
| chr4_1 | three_prime_UTR | 81880110 | 81880473 | 81880110 | ID=Msa0577540-mRNA-1:three_prime_utr;Parent=Msa0577540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
