AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579320 MtrunA17_Chr4g0043001 94.764 573 30 0 1 573 1 573 0.0 1138
Msa0579320 MtrunA17_Chr4g0043021 83.972 574 90 2 1 573 1 573 0.0 985
Msa0579320 MtrunA17_Chr4g0022251 35.352 512 255 19 85 576 173 628 7.38e-72 243
Msa0579320 MtrunA17_Chr1g0173511 32.877 511 253 18 85 562 36 489 4.56e-66 224
Msa0579320 MtrunA17_Chr8g0364481 31.017 590 314 24 25 573 46 583 3.41e-65 225
Msa0579320 MtrunA17_Chr5g0419621 32.296 514 271 20 83 573 131 590 2.89e-63 220
Msa0579320 MtrunA17_Chr4g0057551 30.667 600 312 23 20 572 55 597 2.15e-61 215
Msa0579320 MtrunA17_Chr3g0116051 28.785 601 326 22 20 573 49 594 5.21e-60 211
Msa0579320 MtrunA17_Chr3g0116091 26.623 462 245 17 129 573 6 390 1.38e-38 147
Msa0579320 MtrunA17_Chr7g0266151 27.427 412 223 12 144 552 47 385 7.56e-33 131
Msa0579320 MtrunA17_Chr7g0266131 29.478 441 232 18 118 555 30 394 2.63e-31 127
Msa0579320 MtrunA17_Chr5g0443881 28.916 415 217 16 144 555 49 388 5.39e-30 123
Msa0579320 MtrunA17_Chr3g0098721 27.952 415 221 16 144 555 43 382 7.84e-28 116
Msa0579320 MtrunA17_Chr1g0178831 26.841 421 227 14 140 555 42 386 1.85e-27 115
Msa0579320 MtrunA17_Chr3g0121411 28.095 420 212 16 144 519 71 444 8.16e-24 105
Msa0579320 MtrunA17_Chr4g0019091 25.161 465 277 15 143 596 54 458 2.29e-23 103
Msa0579320 MtrunA17_Chr3g0121431 27.934 426 215 17 139 519 121 499 4.00e-23 103
Msa0579320 MtrunA17_Chr7g0236041 25.386 453 238 18 139 548 65 460 7.37e-21 96.7
Msa0579320 MtrunA17_Chr4g0064541 25.446 448 254 20 143 573 54 438 2.00e-20 94.7
Msa0579320 MtrunA17_Chr1g0211041 24.899 494 281 19 125 596 35 460 2.91e-20 94.4
Msa0579320 MtrunA17_Chr3g0116071 32.558 172 91 7 192 343 48 214 7.06e-20 89.7
Msa0579320 MtrunA17_Chr6g0453731 27.445 317 158 11 212 496 146 422 4.70e-19 91.3
Msa0579320 MtrunA17_Chr4g0019071 25.510 294 184 7 287 573 51 316 2.17e-15 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579320 AT1G13900.1 64.448 571 192 4 6 573 8 570 0.0 790
Msa0579320 AT2G03450.1 64.286 574 190 6 5 573 7 570 0.0 769
Msa0579320 AT1G13750.1 32.167 600 302 25 20 572 42 583 1.12e-67 232
Msa0579320 AT5G50400.1 31.784 538 293 19 44 557 78 565 1.76e-65 226
Msa0579320 AT5G50400.2 32.347 507 274 18 70 557 37 493 6.66e-65 223
Msa0579320 AT4G24890.1 29.208 606 332 25 11 573 35 586 1.40e-59 210
Msa0579320 AT3G52780.1 30.529 416 218 14 144 557 44 390 1.49e-33 133
Msa0579320 AT3G52820.1 30.000 420 215 15 140 555 43 387 1.21e-32 131
Msa0579320 AT3G52780.2 31.412 347 184 12 144 488 44 338 2.17e-31 125
Msa0579320 AT3G52810.1 28.266 421 225 14 144 561 51 397 3.83e-29 120
Msa0579320 AT3G20500.1 26.555 418 231 13 140 555 43 386 2.14e-27 115
Msa0579320 AT4G13700.1 29.716 387 213 14 139 496 60 416 3.53e-25 109
Msa0579320 AT2G27190.1 27.704 379 203 16 212 572 118 443 1.13e-21 99.0
Msa0579320 AT3G07130.1 30.409 342 160 13 212 524 140 432 2.00e-21 98.6
Msa0579320 AT4G13700.2 28.726 369 207 13 139 481 60 398 5.84e-21 96.3
Msa0579320 AT2G32770.3 26.124 467 255 18 144 552 69 503 4.98e-20 94.4
Msa0579320 AT2G32770.2 27.586 377 215 13 212 552 68 422 1.54e-19 92.0
Msa0579320 AT4G36350.1 28.249 354 197 13 212 555 114 420 3.01e-19 91.7
Msa0579320 AT1G56360.1 27.143 350 206 10 212 555 114 420 4.27e-19 90.9
Msa0579320 AT5G34850.1 24.379 443 265 17 143 573 53 437 2.53e-18 88.6
Msa0579320 AT3G07130.2 29.582 311 151 11 212 494 140 410 2.70e-18 89.0
Msa0579320 AT2G18130.1 25.413 303 171 9 303 584 171 439 8.71e-17 83.6
Msa0579320 AT2G16430.2 24.204 471 274 17 143 596 58 462 1.29e-16 83.2
Msa0579320 AT2G16430.1 26.144 306 183 11 300 596 71 342 6.57e-15 77.0
Msa0579320 AT2G32770.1 25.490 459 239 20 144 552 69 474 3.27e-12 69.7
Msa0579320 AT3G46120.1 29.319 191 115 6 375 555 164 344 2.40e-11 66.2

Find 182 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTATTACTCATTTGATA+TGG 0.193459 4_1:-83989061 Msa0579320:CDS
TACAGCCATGGAAACCTAAT+TGG 0.237477 4_1:-83989197 Msa0579320:CDS
AAACCTAATTGGACTAATTA+TGG 0.245800 4_1:-83989186 Msa0579320:CDS
CAATGTGAACCTTGCCCTTT+GGG 0.254495 4_1:-83988818 Msa0579320:CDS
GAAGAGGTTTCGTTTGTTTC+GGG 0.264619 4_1:-83990996 Msa0579320:CDS
TGAAGAGGTTTCGTTTGTTT+CGG 0.278246 4_1:-83990997 Msa0579320:CDS
TAACTTCTTGAAGCATGATT+TGG 0.286113 4_1:-83988977 Msa0579320:CDS
TTTCCATAATTAGTCCAATT+AGG 0.311578 4_1:+83989183 None:intergenic
AGAAATGGCGAGAAGGTTTC+CGG 0.335298 4_1:+83991019 None:intergenic
CCACGATACAAAGACTGTTT+TGG 0.338175 4_1:+83988613 None:intergenic
AATAACTACACTTGTGGAAA+TGG 0.347897 4_1:-83988760 Msa0579320:CDS
ATCAGGGTTGATTTCGGATT+GGG 0.356573 4_1:+83991076 None:intergenic
GCGGTGTACCCTATAGTTTA+AGG 0.356975 4_1:-83989143 Msa0579320:CDS
TGAGCACTTGGAACCTCTAT+TGG 0.358489 4_1:-83988848 Msa0579320:CDS
TCCACCTGGCAATCCGGTTC+CGG 0.362173 4_1:-83991161 Msa0579320:CDS
ACAATGTGAACCTTGCCCTT+TGG 0.362789 4_1:-83988819 Msa0579320:CDS
TAATAAAGATTTCTAGTTGC+TGG 0.363307 4_1:+83989075 None:intergenic
GTAGGTTCTGACGAATTTCC+AGG 0.373251 4_1:+83989111 None:intergenic
TGAAGATTATTGAAAGATAG+AGG 0.374624 4_1:+83991372 None:intergenic
TCCATTGATTGTTGTGTACA+TGG 0.378076 4_1:+83988903 None:intergenic
AATGGCGTGGGCCGGAGAGC+AGG 0.380124 4_1:-83988742 Msa0579320:CDS
CATGCTTCAAGAAGTTATAC+TGG 0.380553 4_1:+83988983 None:intergenic
ATAACGATCAGGGTTGATTT+CGG 0.381601 4_1:+83991070 None:intergenic
CTTTATTACTCATTTGATAT+GGG 0.382012 4_1:-83989060 Msa0579320:CDS
TGGAGGTTTCTTGAGGAAGT+TGG 0.382263 4_1:-83985290 Msa0579320:CDS
GTTGCTCCCAAGAAGAAAAT+TGG 0.386841 4_1:+83989005 None:intergenic
GAGGGAGAGTGTGCCGGAAC+CGG 0.388793 4_1:+83991148 None:intergenic
TGGGGAGAGAAAATGTCATA+TGG 0.392406 4_1:-83990874 Msa0579320:CDS
AGGAAGAAGATACTACTATA+AGG 0.392651 4_1:-83990724 Msa0579320:intron
GTTTCGTTTGTTTCGGGTAA+AGG 0.396676 4_1:-83990990 Msa0579320:CDS
CATCTTGTGATTGGCATGGC+AGG 0.399832 4_1:-83988700 Msa0579320:CDS
CATGTTGAACCTTAAACTAT+AGG 0.406709 4_1:+83989134 None:intergenic
CCCACAACTCTATCAAAATC+CGG 0.407569 4_1:-83991308 Msa0579320:CDS
TTGAGGAAAGATCGAGTCAT+TGG 0.409792 4_1:+83988636 None:intergenic
TTCTCTCAACGCAACATCCT+TGG 0.412679 4_1:+83988879 None:intergenic
TTGTCATGGTCATAACGATC+AGG 0.414015 4_1:+83991059 None:intergenic
TATACCGTTCATCTTGTGAT+TGG 0.415416 4_1:-83988709 Msa0579320:CDS
AGAAAAGATGCTTGAGCACT+TGG 0.415912 4_1:-83988860 Msa0579320:CDS
TGGACTAATTATGGAAAAGA+TGG 0.416929 4_1:-83989177 Msa0579320:CDS
AAGGTTTCCGGTTTGTGGTA+AGG 0.421400 4_1:+83991031 None:intergenic
GCGAGAAGGTTTCCGGTTTG+TGG 0.425013 4_1:+83991026 None:intergenic
TGGATGATTTAGAGAGGAAG+AGG 0.425118 4_1:+83991180 None:intergenic
AGTCTAGCTCTGAGGGTGAT+TGG 0.427544 4_1:+83991255 None:intergenic
TGTGCCGGAACCGGATTGCC+AGG 0.440070 4_1:+83991157 None:intergenic
TCCTCCTACGACAACTTCAT+TGG 0.440977 4_1:-83991206 Msa0579320:CDS
AGGTTTCCGGTTTGTGGTAA+GGG 0.442612 4_1:+83991032 None:intergenic
ATGTTGAACCTTAAACTATA+GGG 0.442633 4_1:+83989135 None:intergenic
AAACGAAACCTCTTCAGAAA+TGG 0.443527 4_1:+83991004 None:intergenic
AAGCTCGTGGTTTCTTATGT+TGG 0.444757 4_1:-83988550 Msa0579320:CDS
TTAGGTTTCCATGGCTGTAA+AGG 0.446726 4_1:+83989201 None:intergenic
CTCCGTTCCAACTACATCTT+CGG 0.446774 4_1:-83991113 Msa0579320:CDS
ACATTGTTGTTCACCAATAG+AGG 0.452089 4_1:+83988835 None:intergenic
TTGATCACTAGTTTAAAGAA+AGG 0.454168 4_1:-83990744 Msa0579320:CDS
AGTGTTGGTTGGAGGGATCC+AGG 0.454568 4_1:-83990783 Msa0579320:CDS
ATGGCGTGGGCCGGAGAGCA+GGG 0.457953 4_1:-83988741 Msa0579320:CDS
CCTTCTCGCCATTTCTGAAG+AGG 0.461630 4_1:-83991012 Msa0579320:CDS
GAAGTTGTCGTAGGAGGACG+TGG 0.465202 4_1:+83991211 None:intergenic
TGCCCTTGAACTACTACAAA+AGG 0.467528 4_1:+83988931 None:intergenic
AGTTTAAGGTTCAACATGCC+TGG 0.468330 4_1:-83989129 Msa0579320:CDS
AAGGAGACGTATGTGAGGTA+TGG 0.469112 4_1:-83990894 Msa0579320:CDS
CCTTAGTGTGACGGTGTCCC+CGG 0.471605 4_1:+83991289 None:intergenic
GTGGTAAGGGGTTATTGTCA+TGG 0.474509 4_1:+83991045 None:intergenic
CCCATGTACACAACAATCAA+TGG 0.475166 4_1:-83988904 Msa0579320:CDS
CATGATTTCCAATGCATACA+TGG 0.476850 4_1:+83989235 None:intergenic
CAACCAACACTCTCGTTAGC+AGG 0.479587 4_1:+83990795 None:intergenic
GGCAAGACAAGCAATCCATC+TGG 0.484465 4_1:-83988678 Msa0579320:CDS
GTTGGAACGGAGGTTGATGA+GGG 0.484503 4_1:+83991124 None:intergenic
AAATCATCCACCTGGCAATC+CGG 0.487160 4_1:-83991167 Msa0579320:CDS
GGGTTTCGATTGGACAAGGT+TGG 0.487777 4_1:+83991346 None:intergenic
TTGGAAATCATGAGTATGAT+TGG 0.491026 4_1:-83989224 Msa0579320:CDS
TTTCTTGAGGAAGTTGGAGA+TGG 0.494586 4_1:-83985284 Msa0579320:CDS
TACCTCACATACGTCTCCTT+CGG 0.495897 4_1:+83990897 None:intergenic
AGGAGACGTATGTGAGGTAT+GGG 0.496851 4_1:-83990893 Msa0579320:CDS
ACATCTTCGGTATCTTCCAT+TGG 0.497800 4_1:-83991100 Msa0579320:CDS
TGAGGAAAGATCGAGTCATT+GGG 0.499179 4_1:+83988637 None:intergenic
TTAGTCCAATTAGGTTTCCA+TGG 0.501745 4_1:+83989192 None:intergenic
ATCTATGAACATGGCCCCAA+AGG 0.501753 4_1:+83988803 None:intergenic
GATCAGGGTTGATTTCGGAT+TGG 0.501872 4_1:+83991075 None:intergenic
GTGGCATACCATGTATGCAT+TGG 0.503990 4_1:-83989243 Msa0579320:CDS
AATAACCCCTTACCACAAAC+CGG 0.506054 4_1:-83991038 Msa0579320:CDS
ATCCATCTGGAAAACAAGAC+CGG 0.506758 4_1:-83988665 Msa0579320:CDS
ATCCTTTGTCCCCTGCTCTC+CGG 0.507689 4_1:+83988731 None:intergenic
TCTCCTCATCAGCAAACTCT+AGG 0.510188 4_1:+83985255 None:intergenic
TTGCGGTGGCGCGTGTGAAG+AGG 0.510510 4_1:-83990845 Msa0579320:CDS
CTCTGAGGGTGATTGGATAC+CGG 0.512218 4_1:+83991262 None:intergenic
GGAAATTCGTCAGAACCTAC+TGG 0.514003 4_1:-83989108 Msa0579320:CDS
CAAGTGGTTATGCGTGGTTG+TGG 0.514084 4_1:-83989305 Msa0579320:CDS
GGGGAGAGAAAATGTCATAT+GGG 0.518872 4_1:-83990873 Msa0579320:CDS
ACCGTCACACTAAGGTGGTC+CGG 0.520460 4_1:-83991281 Msa0579320:CDS
TCTATGAACATGGCCCCAAA+GGG 0.523434 4_1:+83988804 None:intergenic
CTAACGAGAGTGTTGGTTGG+AGG 0.524469 4_1:-83990791 Msa0579320:CDS
CCACAACTCTATCAAAATCC+GGG 0.525087 4_1:-83991307 Msa0579320:CDS
GTTTGTTTCGGGTAAAGGAC+CGG 0.527184 4_1:-83990985 Msa0579320:CDS
AAACCTAGAGTTTGCTGATG+AGG 0.527918 4_1:-83985258 Msa0579320:CDS
ATGATTTGGAATCAGTTGAC+AGG 0.528504 4_1:-83988963 Msa0579320:CDS
TGAACCTGTTGCAACAAAAG+TGG 0.530909 4_1:-83989262 Msa0579320:CDS
AAGTGGTTATGCGTGGTTGT+GGG 0.532637 4_1:-83989304 Msa0579320:CDS
TCTTATGTTGGAAATCATGA+TGG 0.533637 4_1:-83988538 Msa0579320:CDS
AGTTGGAACGGAGGTTGATG+AGG 0.534951 4_1:+83991123 None:intergenic
CAAAACAGTCTTTGTATCGT+GGG 0.537627 4_1:-83988612 Msa0579320:CDS
GAAGATACCGAAGATGTAGT+TGG 0.538252 4_1:+83991106 None:intergenic
TGGCGTGGGCCGGAGAGCAG+GGG 0.538311 4_1:-83988740 Msa0579320:CDS
ATGATTGGCCTTTACAGCCA+TGG 0.542059 4_1:-83989209 Msa0579320:CDS
CTCCGTGATGTTGAAGCTCT+AGG 0.548924 4_1:-83989372 Msa0579320:CDS
GGCCGGAGAGCAGGGGACAA+AGG 0.549021 4_1:-83988733 Msa0579320:CDS
CCATTGATTGTTGTGTACAT+GGG 0.550156 4_1:+83988904 None:intergenic
ATCTTGTGATTGGCATGGCA+GGG 0.555722 4_1:-83988699 Msa0579320:CDS
TGATTTCGGATTGGGTCCAA+TGG 0.556134 4_1:+83991084 None:intergenic
AAAGCATATCAACAGTGAAG+TGG 0.556245 4_1:-83989398 Msa0579320:CDS
GCCAATGAAGTTGTCGTAGG+AGG 0.560684 4_1:+83991205 None:intergenic
AAAGCAAGATGAATCTGCTC+CGG 0.560908 4_1:+83990966 None:intergenic
CTGCTAACGAGAGTGTTGGT+TGG 0.561825 4_1:-83990794 Msa0579320:CDS
CGGTTAGGGAGGGTTTCGAT+TGG 0.567750 4_1:+83991336 None:intergenic
CCTCTTCAGAAATGGCGAGA+AGG 0.567798 4_1:+83991012 None:intergenic
TAACGAGAGTGTTGGTTGGA+GGG 0.568916 4_1:-83990790 Msa0579320:CDS
CCACAAGTGTAGTTATTCAG+TGG 0.569232 4_1:+83988766 None:intergenic
CCGGGGACACCGTCACACTA+AGG 0.569874 4_1:-83991289 Msa0579320:CDS
ATCGAGTCATTGGGATGACC+CGG 0.570194 4_1:+83988646 None:intergenic
ATCTCTCGTATCTATGAACA+TGG 0.572154 4_1:+83988794 None:intergenic
GGTTTCCGGTTTGTGGTAAG+GGG 0.574456 4_1:+83991033 None:intergenic
TGTCATGGTCATAACGATCA+GGG 0.575204 4_1:+83991060 None:intergenic
CAACTCATAGCTTTGTGTCA+AGG 0.575696 4_1:-83989509 Msa0579320:CDS
CCACTGAATAACTACACTTG+TGG 0.577944 4_1:-83988766 Msa0579320:CDS
CTTGTGGAAATGGCGTGGGC+CGG 0.578247 4_1:-83988750 Msa0579320:CDS
TTCCTAGAGCTTCAACATCA+CGG 0.580505 4_1:+83989370 None:intergenic
CGTTCATCTTGTGATTGGCA+TGG 0.581543 4_1:-83988704 Msa0579320:CDS
GGGAGGGTTTCGATTGGACA+AGG 0.581908 4_1:+83991342 None:intergenic
ATGTCATATGGGAGGTCTTG+CGG 0.583227 4_1:-83990862 Msa0579320:CDS
TAGAGGAAGAGTATTGTGCA+AGG 0.584858 4_1:+83991389 None:intergenic
GAACATGGCCCCAAAGGGCA+AGG 0.584999 4_1:+83988809 None:intergenic
GGATGAAGAAGATGCTATGC+GGG 0.585911 4_1:-83990940 Msa0579320:CDS
ACTAATTATGGAAAAGATGG+AGG 0.587578 4_1:-83989174 Msa0579320:CDS
TACACTTGTGGAAATGGCGT+GGG 0.587976 4_1:-83988754 Msa0579320:CDS
CCAAAACAGTCTTTGTATCG+TGG 0.588649 4_1:-83988613 Msa0579320:CDS
GCTACGAAGTCTAGCTCTGA+GGG 0.589676 4_1:+83991248 None:intergenic
CCGATGTGTGACACAAAAGC+GGG 0.592792 4_1:+83989342 None:intergenic
TACCGAAGATGTAGTTGGAA+CGG 0.595020 4_1:+83991111 None:intergenic
AATTATGGAAAAGATGGAGG+TGG 0.595238 4_1:-83989171 Msa0579320:CDS
CTACACTTGTGGAAATGGCG+TGG 0.595264 4_1:-83988755 Msa0579320:CDS
AAAGCATCATGTATATAACC+TGG 0.595486 4_1:+83990765 None:intergenic
TCCATCTGGAAAACAAGACC+GGG 0.597952 4_1:-83988664 Msa0579320:CDS
GTATGTGACGAGGGATCCGA+AGG 0.606007 4_1:-83990913 Msa0579320:CDS
TAGAGTTTGCTGATGAGGAG+AGG 0.606328 4_1:-83985253 Msa0579320:CDS
ACAATGGTGGAGGTTTCTTG+AGG 0.607399 4_1:-83985297 Msa0579320:CDS
CACAACAATCAATGGAACCA+AGG 0.611304 4_1:-83988896 Msa0579320:CDS
TCCTCTCTAAATCATCCACC+TGG 0.615171 4_1:-83991175 Msa0579320:CDS
TCCGATGTGTGACACAAAAG+CGG 0.615605 4_1:+83989341 None:intergenic
AAAACAGTCTTTGTATCGTG+GGG 0.615897 4_1:-83988611 Msa0579320:CDS
CGCGTGTGAAGAGGTATGAG+AGG 0.617971 4_1:-83990836 Msa0579320:CDS
TGGAACGGAGGTTGATGAGG+GGG 0.618753 4_1:+83991126 None:intergenic
GTTTGGGTACATTAGACTAG+TGG 0.624624 4_1:-83988584 Msa0579320:CDS
GTAGCCAATGAAGTTGTCGT+AGG 0.625292 4_1:+83991202 None:intergenic
ACCGGACCACCTTAGTGTGA+CGG 0.627721 4_1:+83991280 None:intergenic
AAAGATGGAGGTGGTGAGTG+CGG 0.636261 4_1:-83989162 Msa0579320:CDS
GCCAGGTGGATGATTTAGAG+AGG 0.636449 4_1:+83991174 None:intergenic
GCTGGAGCTATAGTTCCAGT+AGG 0.636710 4_1:+83989093 None:intergenic
GCGGGTTATGTATGTGACGA+GGG 0.644902 4_1:-83990922 Msa0579320:CDS
TTGGAACGGAGGTTGATGAG+GGG 0.645080 4_1:+83991125 None:intergenic
GGAGACATTAGTTACGCAAG+TGG 0.646032 4_1:-83989321 Msa0579320:CDS
AATGTGAACCTTGCCCTTTG+GGG 0.650716 4_1:-83988817 Msa0579320:CDS
TGCGGGTTATGTATGTGACG+AGG 0.651449 4_1:-83990923 Msa0579320:CDS
GGGACACCGTCACACTAAGG+TGG 0.653790 4_1:-83991286 Msa0579320:CDS
TTGTCGTAGGAGGACGTGGG+TGG 0.654116 4_1:+83991215 None:intergenic
TGCTACGAAGTCTAGCTCTG+AGG 0.656528 4_1:+83991247 None:intergenic
GTTACGCAAGTGGTTATGCG+TGG 0.658494 4_1:-83989311 Msa0579320:CDS
CATGCCAATCACAAGATGAA+CGG 0.659360 4_1:+83988705 None:intergenic
GCGTGTGAAGAGGTATGAGA+GGG 0.660850 4_1:-83990835 Msa0579320:CDS
GGCTACAAAGCAGAAGCTCG+TGG 0.661109 4_1:-83988563 Msa0579320:CDS
AGGTTATAGCACAAAGAACG+TGG 0.662336 4_1:-83985341 Msa0579320:intron
GCTCCTGCTAACGAGAGTGT+TGG 0.663854 4_1:-83990798 Msa0579320:CDS
CACAACTCTATCAAAATCCG+GGG 0.669749 4_1:-83991306 Msa0579320:CDS
CGGATGAAGAAGATGCTATG+CGG 0.672413 4_1:-83990941 Msa0579320:CDS
ATCCGAAGGAGACGTATGTG+AGG 0.673765 4_1:-83990899 Msa0579320:CDS
GAGAGAAAATGTCATATGGG+AGG 0.677448 4_1:-83990870 Msa0579320:CDS
CGAAGATGTAGTTGGAACGG+AGG 0.680198 4_1:+83991114 None:intergenic
TCATATGGGAGGTCTTGCGG+TGG 0.686577 4_1:-83990859 Msa0579320:CDS
TGTTGGAAATCATGATGGTG+AGG 0.687796 4_1:-83988533 Msa0579320:intron
GCCGGAACCGGATTGCCAGG+TGG 0.689201 4_1:+83991160 None:intergenic
GGAGACGTATGTGAGGTATG+GGG 0.695565 4_1:-83990892 Msa0579320:CDS
AAACAGTCTTTGTATCGTGG+GGG 0.711447 4_1:-83988610 Msa0579320:CDS
AAGTTGTCGTAGGAGGACGT+GGG 0.765592 4_1:+83991212 None:intergenic
CTAGAGCTTCAACATCACGG+AGG 0.777257 4_1:+83989373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTTAATAATA+AGG - chr4_1:83986834-83986853 Msa0579320:intron 0.0%
!!! TAATTTATAGTTTTTGTTTT+TGG + chr4_1:83988562-83988581 None:intergenic 10.0%
!! AAATATAAAAAAATGAATGA+TGG + chr4_1:83988602-83988621 None:intergenic 10.0%
!!! ATTTACATTTTAAATTCTAA+TGG + chr4_1:83989716-83989735 None:intergenic 10.0%
!! TTTACTATTTATAAATAGTT+GGG + chr4_1:83990135-83990154 None:intergenic 10.0%
!! AATAATGAAAGTAAAAAACA+AGG + chr4_1:83985982-83986001 None:intergenic 15.0%
!!! TTTTGCTTAATTTTATTGAA+TGG - chr4_1:83986603-83986622 Msa0579320:intron 15.0%
!!! TTTGCTTAATTTTATTGAAT+GGG - chr4_1:83986604-83986623 Msa0579320:intron 15.0%
!! AAAATTATGATAGAAAACAA+AGG - chr4_1:83986894-83986913 Msa0579320:intron 15.0%
!!! AAAACAAAATCATTGTTTTA+AGG - chr4_1:83986957-83986976 Msa0579320:intron 15.0%
!!! AAATGAAGATTTTTTATCAT+AGG - chr4_1:83988284-83988303 Msa0579320:intron 15.0%
!!! TTTAGTATTTCAATTTTCAA+TGG - chr4_1:83988619-83988638 Msa0579320:CDS 15.0%
!!! TTTTATATATCAAGAAGAAT+TGG - chr4_1:83988870-83988889 Msa0579320:CDS 15.0%
!! GAAAACTTGATTATAAAATA+AGG + chr4_1:83989276-83989295 None:intergenic 15.0%
!!! TAATACTTTTAATCTCTAAA+AGG - chr4_1:83989439-83989458 Msa0579320:CDS 15.0%
!!! AATACTTTTAATCTCTAAAA+GGG - chr4_1:83989440-83989459 Msa0579320:CDS 15.0%
!! TTAATTTATGTGTATAAAGA+AGG - chr4_1:83989469-83989488 Msa0579320:CDS 15.0%
!! ATAAGTAATAACTTCAATAT+CGG + chr4_1:83990087-83990106 None:intergenic 15.0%
!! GTTTACTATTTATAAATAGT+TGG + chr4_1:83990136-83990155 None:intergenic 15.0%
!! ATATTTAATGTTTACAAACA+TGG + chr4_1:83990434-83990453 None:intergenic 15.0%
!!! ATGTTTTGATTATTTGTATA+AGG + chr4_1:83990493-83990512 None:intergenic 15.0%
!! TTTCATTATTACTTTGTGTT+TGG - chr4_1:83985992-83986011 Msa0579320:intron 20.0%
!!! AAAATACCTCGATATTTTTT+TGG - chr4_1:83986234-83986253 Msa0579320:intron 20.0%
!!! AAATACCTCGATATTTTTTT+GGG - chr4_1:83986235-83986254 Msa0579320:intron 20.0%
!!! TGGAAAAGATTTTTAAGTAT+TGG - chr4_1:83986687-83986706 Msa0579320:intron 20.0%
!! TTGTATATCCAAATATAGTT+GGG + chr4_1:83986747-83986766 None:intergenic 20.0%
!! ATTGTATATCCAAATATAGT+TGG + chr4_1:83986748-83986767 None:intergenic 20.0%
!! TTGTATATCCAAATATAGTT+GGG + chr4_1:83986747-83986766 None:intergenic 20.0%
!! ATTGTATATCCAAATATAGT+TGG + chr4_1:83986748-83986767 None:intergenic 20.0%
!! TCTTTATTACTCATTTGATA+TGG - chr4_1:83987545-83987564 Msa0579320:intron 20.0%
!! CTTTATTACTCATTTGATAT+GGG - chr4_1:83987546-83987565 Msa0579320:intron 20.0%
!!! ATATTTACCTGATAATCTTT+TGG - chr4_1:83988242-83988261 Msa0579320:intron 20.0%
!!! TGATTATGATTTTATGGAAA+TGG + chr4_1:83988430-83988449 None:intergenic 20.0%
!! TTTGTTAGAGAGAAATTAAT+TGG + chr4_1:83988821-83988840 None:intergenic 20.0%
!! GACAATCTTAAATTTCTATA+AGG - chr4_1:83988948-83988967 Msa0579320:CDS 20.0%
!! ATATCAAATTAAATCAGCTA+AGG - chr4_1:83989315-83989334 Msa0579320:CDS 20.0%
!! TTGAAAAAATCTGATGAAAA+TGG - chr4_1:83989517-83989536 Msa0579320:CDS 20.0%
!! AATATTAGTTGATTGTTATG+TGG + chr4_1:83989654-83989673 None:intergenic 20.0%
!! TAGACAAAACTAATTCTAAT+CGG + chr4_1:83989888-83989907 None:intergenic 20.0%
!!! ATTTCTAAAATTTTCCCAAT+TGG + chr4_1:83990179-83990198 None:intergenic 20.0%
!! CTACAATTACAATTGTTTAT+CGG + chr4_1:83990301-83990320 None:intergenic 20.0%
!! TACAAATGAAAAATAGTTGT+TGG + chr4_1:83990372-83990391 None:intergenic 20.0%
!! ATACTATGTCATATATTTCA+TGG - chr4_1:83990536-83990555 Msa0579320:intron 20.0%
!! TACTATGTCATATATTTCAT+GGG - chr4_1:83990537-83990556 Msa0579320:intron 20.0%
!! GAATTATATTCATGTATAGA+TGG + chr4_1:83990584-83990603 None:intergenic 20.0%
!! TATTTGTATGAGTTTAACAT+TGG + chr4_1:83990925-83990944 None:intergenic 20.0%
!! AAAAGATTGAACAATTACTA+AGG - chr4_1:83990972-83990991 Msa0579320:CDS 20.0%
!! ATATAAAATGTGAACAAACA+AGG - chr4_1:83991027-83991046 Msa0579320:CDS 20.0%
! TGAAGATTATTGAAAGATAG+AGG + chr4_1:83985237-83985256 None:intergenic 25.0%
!! TTGATCACTAGTTTAAAGAA+AGG - chr4_1:83985862-83985881 Msa0579320:intron 25.0%
! ATGAAAGTAAAAAACAAGGT+AGG + chr4_1:83985978-83985997 None:intergenic 25.0%
! ATTATTACTTTGTGTTTGGT+TGG - chr4_1:83985996-83986015 Msa0579320:intron 25.0%
!! GGTAATGGTTTAAAGTTTAA+AGG - chr4_1:83986068-83986087 Msa0579320:intron 25.0%
!!! TTTGATTTGATAAAGAGACA+AGG - chr4_1:83986263-83986282 Msa0579320:intron 25.0%
! CACTAAATCATAAGAAAACT+TGG - chr4_1:83986387-83986406 Msa0579320:intron 25.0%
!!! ATTTTTGATAGTTTGCGTTA+TGG + chr4_1:83986497-83986516 None:intergenic 25.0%
!! AAAATCTTTTCCAACTCAAA+CGG + chr4_1:83986680-83986699 None:intergenic 25.0%
!!! AAGATTTTTAAGTATTGGTC+TGG - chr4_1:83986692-83986711 Msa0579320:intron 25.0%
! TCATGTAATCGTTTAGTATA+TGG - chr4_1:83987006-83987025 Msa0579320:intron 25.0%
!! GAAACAATAGCTTTCATTTT+TGG - chr4_1:83987135-83987154 Msa0579320:intron 25.0%
! GTACGCAAAAATGTATTATA+TGG + chr4_1:83987180-83987199 None:intergenic 25.0%
! AAACCTAATTGGACTAATTA+TGG - chr4_1:83987420-83987439 Msa0579320:intron 25.0%
! TTTCCATAATTAGTCCAATT+AGG + chr4_1:83987426-83987445 None:intergenic 25.0%
! ATGTTGAACCTTAAACTATA+GGG + chr4_1:83987474-83987493 None:intergenic 25.0%
!!! TAATAAAGATTTCTAGTTGC+TGG + chr4_1:83987534-83987553 None:intergenic 25.0%
!! AAATCTTCATTTTCCCATAT+AGG + chr4_1:83988276-83988295 None:intergenic 25.0%
!! GAGTCATGATTATGATTTTA+TGG + chr4_1:83988436-83988455 None:intergenic 25.0%
! AATTTCTACAGAGAAGAAAA+AGG + chr4_1:83988496-83988515 None:intergenic 25.0%
!! TCAATTTTCAATGGCTTTTT+TGG - chr4_1:83988628-83988647 Msa0579320:CDS 25.0%
!!! CAATTTTCAATGGCTTTTTT+GGG - chr4_1:83988629-83988648 Msa0579320:CDS 25.0%
!! AAAGATGAACTTTTCTGTAT+TGG - chr4_1:83988743-83988762 Msa0579320:CDS 25.0%
!!! TTTTCTGTATTGGTATTTTC+TGG - chr4_1:83988753-83988772 Msa0579320:CDS 25.0%
! AAAATTCTTCCTGTTTAGAA+TGG + chr4_1:83989017-83989036 None:intergenic 25.0%
! TATGACTATACTCTACAAAA+AGG + chr4_1:83989103-83989122 None:intergenic 25.0%
!! TTTTTGTAGAGTATAGTCAT+AGG - chr4_1:83989102-83989121 Msa0579320:CDS 25.0%
! TTAAATCAGCTAAGGAAAAA+AGG - chr4_1:83989323-83989342 Msa0579320:CDS 25.0%
! TAAATCAGCTAAGGAAAAAA+GGG - chr4_1:83989324-83989343 Msa0579320:CDS 25.0%
!! CTTTGAACTTTTATGTACAT+TGG - chr4_1:83989379-83989398 Msa0579320:CDS 25.0%
! TGTGGAATAAATTAAAGAAC+TGG - chr4_1:83989404-83989423 Msa0579320:CDS 25.0%
! TCAAGCATGTATTTATATGA+AGG + chr4_1:83989567-83989586 None:intergenic 25.0%
! CTATTTCATGTTTGGATAAT+TGG - chr4_1:83989793-83989812 Msa0579320:intron 25.0%
! AGACAAAACTAATTCTAATC+GGG + chr4_1:83989887-83989906 None:intergenic 25.0%
! TTCAATATCGGATGAAATTT+AGG + chr4_1:83990075-83990094 None:intergenic 25.0%
! TACTTATGAGTACATGTTAT+AGG - chr4_1:83990100-83990119 Msa0579320:intron 25.0%
! ACTTATGAGTACATGTTATA+GGG - chr4_1:83990101-83990120 Msa0579320:intron 25.0%
! TGTAAATGAACATATCCAAT+TGG - chr4_1:83990161-83990180 Msa0579320:intron 25.0%
! GTAAATGAACATATCCAATT+GGG - chr4_1:83990162-83990181 Msa0579320:intron 25.0%
!! TCTTTTGCCTTTAGTATTAT+GGG + chr4_1:83990889-83990908 None:intergenic 25.0%
!! ATCTTTTGCCTTTAGTATTA+TGG + chr4_1:83990890-83990909 None:intergenic 25.0%
! CTTAGTATATATATACACCA+AGG + chr4_1:83991078-83991097 None:intergenic 25.0%
! TGTTGGAAAAAGAATTACAA+TGG - chr4_1:83991293-83991312 Msa0579320:CDS 25.0%
! AAAGCATCATGTATATAACC+TGG + chr4_1:83985844-83985863 None:intergenic 30.0%
AGGAAGAAGATACTACTATA+AGG - chr4_1:83985882-83985901 Msa0579320:intron 30.0%
CAAGGTAATCAAAATTAGAC+CGG - chr4_1:83986023-83986042 Msa0579320:intron 30.0%
! CTTTAAACATGTGTTGGTAA+TGG - chr4_1:83986047-83986066 Msa0579320:intron 30.0%
GGAGAACTAAAATCGTATTT+CGG + chr4_1:83986521-83986540 None:intergenic 30.0%
!! ATATAGTTGGGTTCTAAACA+TGG + chr4_1:83986787-83986806 None:intergenic 30.0%
! GTTTAGAACCCAACTATATT+TGG - chr4_1:83986788-83986807 Msa0579320:intron 30.0%
GATTACATGAACCAGATTTA+GGG + chr4_1:83986996-83987015 None:intergenic 30.0%
! TACCAGGTTGGAAATAAAAA+TGG - chr4_1:83987063-83987082 Msa0579320:intron 30.0%
TTGGAAATAAAAATGGAGGT+TGG - chr4_1:83987070-83987089 Msa0579320:intron 30.0%
TTGGAAATCATGAGTATGAT+TGG - chr4_1:83987382-83987401 Msa0579320:intron 30.0%
TGGACTAATTATGGAAAAGA+TGG - chr4_1:83987429-83987448 Msa0579320:intron 30.0%
ACTAATTATGGAAAAGATGG+AGG - chr4_1:83987432-83987451 Msa0579320:intron 30.0%
CATGTTGAACCTTAAACTAT+AGG + chr4_1:83987475-83987494 None:intergenic 30.0%
TAACTTCTTGAAGCATGATT+TGG - chr4_1:83987629-83987648 Msa0579320:intron 30.0%
AATAACTACACTTGTGGAAA+TGG - chr4_1:83987846-83987865 Msa0579320:intron 30.0%
TCTTATGTTGGAAATCATGA+TGG - chr4_1:83988068-83988087 Msa0579320:intron 30.0%
! AGAAGAAAAAGGCACATAAT+TGG + chr4_1:83988485-83988504 None:intergenic 30.0%
!!! GAGTTTGTTATCAGCATTTT+AGG + chr4_1:83988694-83988713 None:intergenic 30.0%
CAGAAAAGTTCATCTTTCAA+AGG + chr4_1:83988740-83988759 None:intergenic 30.0%
!! GAAGAGAATACAACTGATTT+TGG + chr4_1:83988791-83988810 None:intergenic 30.0%
TGTGCTTTAATTATGATGAG+TGG - chr4_1:83989036-83989055 Msa0579320:CDS 30.0%
CTTTAATTATGATGAGTGGT+AGG - chr4_1:83989040-83989059 Msa0579320:CDS 30.0%
CAAAAAGGTTCTCATTTCTT+TGG + chr4_1:83989088-83989107 None:intergenic 30.0%
! ATAGTCATAGGTTGTTATTG+AGG - chr4_1:83989114-83989133 Msa0579320:CDS 30.0%
! TAGTCATAGGTTGTTATTGA+GGG - chr4_1:83989115-83989134 Msa0579320:CDS 30.0%
!!! GATTTTTTACCATCAAGCAT+TGG - chr4_1:83989229-83989248 Msa0579320:CDS 30.0%
AAATAAGATCCAATGCTTGA+TGG + chr4_1:83989241-83989260 None:intergenic 30.0%
!! TTTTCAAGAACAGAGCAAAA+AGG + chr4_1:83989504-83989523 None:intergenic 30.0%
TTCATAAGATCAAGAGTCTT+TGG - chr4_1:83989619-83989638 Msa0579320:intron 30.0%
GATGAGATCTATTTCATGTT+TGG - chr4_1:83989785-83989804 Msa0579320:intron 30.0%
! AGTTTTTGTATGTTTGACCT+TGG - chr4_1:83989856-83989875 Msa0579320:intron 30.0%
TCGAGTGTCAAAATCATAAT+TGG + chr4_1:83989939-83989958 None:intergenic 30.0%
! ATGAAATTTAGGTTCTACGA+CGG + chr4_1:83990064-83990083 None:intergenic 30.0%
GGATATGTTCATTTACATGA+TGG + chr4_1:83990158-83990177 None:intergenic 30.0%
CTAACTAAAATGTACGTAAG+AGG - chr4_1:83990337-83990356 Msa0579320:intron 30.0%
!! CATTTTAACCATTTAGTTGG+GGG + chr4_1:83990411-83990430 None:intergenic 30.0%
!! GCATTTTAACCATTTAGTTG+GGG + chr4_1:83990412-83990431 None:intergenic 30.0%
!! GGCATTTTAACCATTTAGTT+GGG + chr4_1:83990413-83990432 None:intergenic 30.0%
!! TGGCATTTTAACCATTTAGT+TGG + chr4_1:83990414-83990433 None:intergenic 30.0%
TATTCATGTATAGATGGAGT+TGG + chr4_1:83990578-83990597 None:intergenic 30.0%
TCCACATTAATGAAACTCAT+GGG - chr4_1:83990684-83990703 Msa0579320:intron 30.0%
TCTGAAAACAAACATGGAAA+TGG + chr4_1:83990760-83990779 None:intergenic 30.0%
ATACAGAAAGAGACAATCTT+TGG + chr4_1:83991009-83991028 None:intergenic 30.0%
ATGTGAACAAACAAGGAAAT+AGG - chr4_1:83991034-83991053 Msa0579320:CDS 30.0%
ACTACTATATATAGTGAGCT+AGG - chr4_1:83991098-83991117 Msa0579320:CDS 30.0%
GTTGAAATTGATCCAAGATA+TGG + chr4_1:83991202-83991221 None:intergenic 30.0%
TGGAAAAAGAATTACAATGG+TGG - chr4_1:83991296-83991315 Msa0579320:CDS 30.0%
AAAAAGAATTACAATGGTGG+AGG - chr4_1:83991299-83991318 Msa0579320:CDS 30.0%
! ATAACGATCAGGGTTGATTT+CGG + chr4_1:83985539-83985558 None:intergenic 35.0%
AAACGAAACCTCTTCAGAAA+TGG + chr4_1:83985605-83985624 None:intergenic 35.0%
TGAAGAGGTTTCGTTTGTTT+CGG - chr4_1:83985609-83985628 Msa0579320:intron 35.0%
TTGTGTTTGGTTGGAAAACA+AGG - chr4_1:83986005-83986024 Msa0579320:intron 35.0%
! ACCAACACATGTTTAAAGTC+CGG + chr4_1:83986045-83986064 None:intergenic 35.0%
!! ACATGTGTTGGTAATGGTAA+TGG - chr4_1:83986053-83986072 Msa0579320:intron 35.0%
ACACACCCAAAAAAATATCG+AGG + chr4_1:83986243-83986262 None:intergenic 35.0%
! ACCCTGTTTGATTTACAAAC+TGG - chr4_1:83986306-83986325 Msa0579320:intron 35.0%
GCCAGTTTGTAAATCAAACA+GGG + chr4_1:83986310-83986329 None:intergenic 35.0%
TTGATTTACAAACTGGCCAT+TGG - chr4_1:83986313-83986332 Msa0579320:intron 35.0%
!!! ACTTGTTTTGTCTAGTCCAA+TGG + chr4_1:83986332-83986351 None:intergenic 35.0%
TCATAAGAAAACTTGGCCAT+TGG - chr4_1:83986394-83986413 Msa0579320:intron 35.0%
!!! ACTTGTTTTGTCTAGTCCAA+TGG + chr4_1:83986332-83986351 None:intergenic 35.0%
CCAAATATAGTTGGGTTCTA+CGG + chr4_1:83986739-83986758 None:intergenic 35.0%
CGATTACATGAACCAGATTT+AGG + chr4_1:83986997-83987016 None:intergenic 35.0%
CATCACTCAAGTTAAGTTTC+TGG + chr4_1:83987035-83987054 None:intergenic 35.0%
! CAGAAACTTAACTTGAGTGA+TGG - chr4_1:83987033-83987052 Msa0579320:intron 35.0%
!! CTCCATTTTTATTTCCAACC+TGG + chr4_1:83987068-83987087 None:intergenic 35.0%
! CAGGTTGGAAATAAAAATGG+AGG - chr4_1:83987066-83987085 Msa0579320:intron 35.0%
!!! AGCTTTCATTTTTGGTGACA+TGG - chr4_1:83987143-83987162 Msa0579320:intron 35.0%
!!! GCTTTCATTTTTGGTGACAT+GGG - chr4_1:83987144-83987163 Msa0579320:intron 35.0%
AAAGCATATCAACAGTGAAG+TGG - chr4_1:83987208-83987227 Msa0579320:intron 35.0%
CATGATTTCCAATGCATACA+TGG + chr4_1:83987374-83987393 None:intergenic 35.0%
TTAGTCCAATTAGGTTTCCA+TGG + chr4_1:83987417-83987436 None:intergenic 35.0%
AATTATGGAAAAGATGGAGG+TGG - chr4_1:83987435-83987454 Msa0579320:intron 35.0%
! ACAGAGACCAATTTTCTTCT+TGG - chr4_1:83987594-83987613 Msa0579320:intron 35.0%
! CAGAGACCAATTTTCTTCTT+GGG - chr4_1:83987595-83987614 Msa0579320:intron 35.0%
CATGCTTCAAGAAGTTATAC+TGG + chr4_1:83987626-83987645 None:intergenic 35.0%
! ATGATTTGGAATCAGTTGAC+AGG - chr4_1:83987643-83987662 Msa0579320:intron 35.0%
! ACTCCTTTTGTAGTAGTTCA+AGG - chr4_1:83987672-83987691 Msa0579320:intron 35.0%
! CTCCTTTTGTAGTAGTTCAA+GGG - chr4_1:83987673-83987692 Msa0579320:intron 35.0%
! CCATTGATTGTTGTGTACAT+GGG + chr4_1:83987705-83987724 None:intergenic 35.0%
! TCCATTGATTGTTGTGTACA+TGG + chr4_1:83987706-83987725 None:intergenic 35.0%
! ACATTGTTGTTCACCAATAG+AGG + chr4_1:83987774-83987793 None:intergenic 35.0%
ATCTCTCGTATCTATGAACA+TGG + chr4_1:83987815-83987834 None:intergenic 35.0%
TATACCGTTCATCTTGTGAT+TGG - chr4_1:83987897-83987916 Msa0579320:intron 35.0%
!!! TACAAAGACTGTTTTGGTTG+AGG + chr4_1:83987990-83988009 None:intergenic 35.0%
CAAAACAGTCTTTGTATCGT+GGG - chr4_1:83987994-83988013 Msa0579320:intron 35.0%
AAAACAGTCTTTGTATCGTG+GGG - chr4_1:83987995-83988014 Msa0579320:intron 35.0%
TTTATCATAGGCTTTGCTTC+TGG - chr4_1:83988296-83988315 Msa0579320:intron 35.0%
! GGTTTCAGAGACAATTTTCA+AGG + chr4_1:83988464-83988483 None:intergenic 35.0%
!! TTTTGGCTGAAAACTGAATG+AGG + chr4_1:83988545-83988564 None:intergenic 35.0%
!! AACTGATTTTGGTGGTAGTA+GGG + chr4_1:83988780-83988799 None:intergenic 35.0%
!! GAGAATACAACTGATTTTGG+TGG + chr4_1:83988788-83988807 None:intergenic 35.0%
! TCCTGTTTAGAATGGAGAAT+TGG + chr4_1:83989009-83989028 None:intergenic 35.0%
! AGTCATAGGTTGTTATTGAG+GGG - chr4_1:83989116-83989135 Msa0579320:CDS 35.0%
TATACTTTGCATGTGTTGTC+TGG - chr4_1:83989153-83989172 Msa0579320:CDS 35.0%
! CTTTTATGTACATTGGCATG+TGG - chr4_1:83989386-83989405 Msa0579320:CDS 35.0%
GACTCTTGATCTTATGAACT+AGG + chr4_1:83989617-83989636 None:intergenic 35.0%
! TTTTGTATGTTTGACCTTGG+TGG - chr4_1:83989859-83989878 Msa0579320:intron 35.0%
AAATCAAACCCCCAACTAAA+TGG - chr4_1:83990400-83990419 Msa0579320:intron 35.0%
TGTTGCTCACAAGAAGAATA+TGG + chr4_1:83990630-83990649 None:intergenic 35.0%
! GTCTAGGACGTATCTATTTA+TGG + chr4_1:83990654-83990673 None:intergenic 35.0%
ATAGATACGTCCTAGACTTT+CGG - chr4_1:83990657-83990676 Msa0579320:intron 35.0%
CTCCACATTAATGAAACTCA+TGG - chr4_1:83990683-83990702 Msa0579320:intron 35.0%
CCACATTAATGAAACTCATG+GGG - chr4_1:83990685-83990704 Msa0579320:intron 35.0%
AAGCATAATTGAGGATGAAG+AGG + chr4_1:83990712-83990731 None:intergenic 35.0%
! GATGGTTGAAAGCATAATTG+AGG + chr4_1:83990721-83990740 None:intergenic 35.0%
CGAGAATCTGAAAACAAACA+TGG + chr4_1:83990766-83990785 None:intergenic 35.0%
ACTACAGCTGTAACTATGAA+AGG + chr4_1:83990811-83990830 None:intergenic 35.0%
GTAGTACTAATTGCAAGACA+TGG - chr4_1:83990826-83990845 Msa0579320:CDS 35.0%
TGGAAAACCAAATACAAGCA+TGG - chr4_1:83990846-83990865 Msa0579320:CDS 35.0%
ACCAAATACAAGCATGGAAA+TGG - chr4_1:83990852-83990871 Msa0579320:CDS 35.0%
TCCATTTCCATGCTTGTATT+TGG + chr4_1:83990856-83990875 None:intergenic 35.0%
TGCATTGCCCATAATACTAA+AGG - chr4_1:83990879-83990898 Msa0579320:CDS 35.0%
TGAACAAACAAGGAAATAGG+TGG - chr4_1:83991037-83991056 Msa0579320:CDS 35.0%
GAACAAACAAGGAAATAGGT+GGG - chr4_1:83991038-83991057 Msa0579320:CDS 35.0%
ACTATATATAGTGAGCTAGG+TGG - chr4_1:83991101-83991120 Msa0579320:CDS 35.0%
ATCATGATTCAGTTGTGAAG+TGG - chr4_1:83991142-83991161 Msa0579320:CDS 35.0%
TCATGATTCAGTTGTGAAGT+GGG - chr4_1:83991143-83991162 Msa0579320:CDS 35.0%
AGAGGAAGAAGAAAAAGAAG+AGG - chr4_1:83991371-83991390 Msa0579320:CDS 35.0%
!! TAGAGGAAGAGTATTGTGCA+AGG + chr4_1:83985220-83985239 None:intergenic 40.0%
!! GGATTTTGATAGAGTTGTGG+GGG + chr4_1:83985299-83985318 None:intergenic 40.0%
!! CGGATTTTGATAGAGTTGTG+GGG + chr4_1:83985300-83985319 None:intergenic 40.0%
!! CCGGATTTTGATAGAGTTGT+GGG + chr4_1:83985301-83985320 None:intergenic 40.0%
CCCACAACTCTATCAAAATC+CGG - chr4_1:83985298-83985317 Msa0579320:CDS 40.0%
CCACAACTCTATCAAAATCC+GGG - chr4_1:83985299-83985318 Msa0579320:CDS 40.0%
CACAACTCTATCAAAATCCG+GGG - chr4_1:83985300-83985319 Msa0579320:CDS 40.0%
TGGATGATTTAGAGAGGAAG+AGG + chr4_1:83985429-83985448 None:intergenic 40.0%
TACCGAAGATGTAGTTGGAA+CGG + chr4_1:83985498-83985517 None:intergenic 40.0%
GAAGATACCGAAGATGTAGT+TGG + chr4_1:83985503-83985522 None:intergenic 40.0%
ACATCTTCGGTATCTTCCAT+TGG - chr4_1:83985506-83985525 Msa0579320:intron 40.0%
! ATCAGGGTTGATTTCGGATT+GGG + chr4_1:83985533-83985552 None:intergenic 40.0%
TGTCATGGTCATAACGATCA+GGG + chr4_1:83985549-83985568 None:intergenic 40.0%
TTGTCATGGTCATAACGATC+AGG + chr4_1:83985550-83985569 None:intergenic 40.0%
AATAACCCCTTACCACAAAC+CGG - chr4_1:83985568-83985587 Msa0579320:intron 40.0%
GAAGAGGTTTCGTTTGTTTC+GGG - chr4_1:83985610-83985629 Msa0579320:intron 40.0%
! GTTTCGTTTGTTTCGGGTAA+AGG - chr4_1:83985616-83985635 Msa0579320:intron 40.0%
AAAGCAAGATGAATCTGCTC+CGG + chr4_1:83985643-83985662 None:intergenic 40.0%
!! GCAGATTCATCTTGCTTTTG+CGG - chr4_1:83985645-83985664 Msa0579320:intron 40.0%
TGGGGAGAGAAAATGTCATA+TGG - chr4_1:83985732-83985751 Msa0579320:intron 40.0%
GGGGAGAGAAAATGTCATAT+GGG - chr4_1:83985733-83985752 Msa0579320:intron 40.0%
GAGAGAAAATGTCATATGGG+AGG - chr4_1:83985736-83985755 Msa0579320:intron 40.0%
ACCGGACTTTAAACATGTGT+TGG - chr4_1:83986041-83986060 Msa0579320:intron 40.0%
GGCCAGTTTGTAAATCAAAC+AGG + chr4_1:83986311-83986330 None:intergenic 40.0%
ATCATCGTCTAGTGAGAAAG+AGG - chr4_1:83986628-83986647 Msa0579320:intron 40.0%
TGAGAAAGAGGATCATGAGT+TGG - chr4_1:83986640-83986659 Msa0579320:intron 40.0%
GAGAAAGAGGATCATGAGTT+GGG - chr4_1:83986641-83986660 Msa0579320:intron 40.0%
CCGTAGAACCCAACTATATT+TGG - chr4_1:83986736-83986755 Msa0579320:intron 40.0%
AAACAAACACGCCCTAAATC+TGG - chr4_1:83986982-83987001 Msa0579320:intron 40.0%
!! CAACTCATAGCTTTGTGTCA+AGG - chr4_1:83987097-83987116 Msa0579320:intron 40.0%
TTCCTAGAGCTTCAACATCA+CGG + chr4_1:83987239-83987258 None:intergenic 40.0%
TGAACCTGTTGCAACAAAAG+TGG - chr4_1:83987344-83987363 Msa0579320:intron 40.0%
!!! TATGCCACTTTTGTTGCAAC+AGG + chr4_1:83987351-83987370 None:intergenic 40.0%
TTAGGTTTCCATGGCTGTAA+AGG + chr4_1:83987408-83987427 None:intergenic 40.0%
TACAGCCATGGAAACCTAAT+TGG - chr4_1:83987409-83987428 Msa0579320:intron 40.0%
! AGTTTAAGGTTCAACATGCC+TGG - chr4_1:83987477-83987496 Msa0579320:intron 40.0%
GTTGCTCCCAAGAAGAAAAT+TGG + chr4_1:83987604-83987623 None:intergenic 40.0%
TGCCCTTGAACTACTACAAA+AGG + chr4_1:83987678-83987697 None:intergenic 40.0%
CCCATGTACACAACAATCAA+TGG - chr4_1:83987702-83987721 Msa0579320:intron 40.0%
CACAACAATCAATGGAACCA+AGG - chr4_1:83987710-83987729 Msa0579320:intron 40.0%
AGAAAAGATGCTTGAGCACT+TGG - chr4_1:83987746-83987765 Msa0579320:intron 40.0%
CCACAAGTGTAGTTATTCAG+TGG + chr4_1:83987843-83987862 None:intergenic 40.0%
CCACTGAATAACTACACTTG+TGG - chr4_1:83987840-83987859 Msa0579320:intron 40.0%
CATGCCAATCACAAGATGAA+CGG + chr4_1:83987904-83987923 None:intergenic 40.0%
ATCCATCTGGAAAACAAGAC+CGG - chr4_1:83987941-83987960 Msa0579320:intron 40.0%
TGAGGAAAGATCGAGTCATT+GGG + chr4_1:83987972-83987991 None:intergenic 40.0%
TTGAGGAAAGATCGAGTCAT+TGG + chr4_1:83987973-83987992 None:intergenic 40.0%
! CCACGATACAAAGACTGTTT+TGG + chr4_1:83987996-83988015 None:intergenic 40.0%
CCAAAACAGTCTTTGTATCG+TGG - chr4_1:83987993-83988012 Msa0579320:intron 40.0%
AAACAGTCTTTGTATCGTGG+GGG - chr4_1:83987996-83988015 Msa0579320:intron 40.0%
GTTTGGGTACATTAGACTAG+TGG - chr4_1:83988022-83988041 Msa0579320:intron 40.0%
AAGCTCGTGGTTTCTTATGT+TGG - chr4_1:83988056-83988075 Msa0579320:intron 40.0%
! TGTTGGAAATCATGATGGTG+AGG - chr4_1:83988073-83988092 Msa0579320:intron 40.0%
GCTGCATCCAAAAGATTATC+AGG + chr4_1:83988252-83988271 None:intergenic 40.0%
! TTTTGGATGCAGCACCTATA+TGG - chr4_1:83988259-83988278 Msa0579320:intron 40.0%
TTTGGATGCAGCACCTATAT+GGG - chr4_1:83988260-83988279 Msa0579320:intron 40.0%
TCCACATGAGCAGAAAATGT+GGG + chr4_1:83988349-83988368 None:intergenic 40.0%
TTCCACATGAGCAGAAAATG+TGG + chr4_1:83988350-83988369 None:intergenic 40.0%
TGCTGATAACAAACTCTGCA+AGG - chr4_1:83988698-83988717 Msa0579320:CDS 40.0%
GCTGATAACAAACTCTGCAA+GGG - chr4_1:83988699-83988718 Msa0579320:CDS 40.0%
!! CAACTGATTTTGGTGGTAGT+AGG + chr4_1:83988781-83988800 None:intergenic 40.0%
AGAATTGGCTGAAGCAGATA+AGG + chr4_1:83988994-83989013 None:intergenic 40.0%
GCCAATTCTCCATTCTAAAC+AGG - chr4_1:83989005-83989024 Msa0579320:CDS 40.0%
! TTGTTATTGAGGGGAAAGCA+AGG - chr4_1:83989125-83989144 Msa0579320:CDS 40.0%
TTTGCATGTGTTGTCTGGTT+TGG - chr4_1:83989158-83989177 Msa0579320:CDS 40.0%
! TTTGGATTTCAAGTGCCTTG+TGG - chr4_1:83989176-83989195 Msa0579320:CDS 40.0%
! TTGGATTTCAAGTGCCTTGT+GGG - chr4_1:83989177-83989196 Msa0579320:CDS 40.0%
GATTCAAAATCCACACGAGT+TGG - chr4_1:83989585-83989604 Msa0579320:intron 40.0%
TGTTTATCGGAGAGTCACAT+TGG + chr4_1:83990288-83990307 None:intergenic 40.0%
CCCCATGAGTTTCATTAATG+TGG + chr4_1:83990688-83990707 None:intergenic 40.0%
GGTTAGAGAGAGAAAGAAGA+TGG + chr4_1:83990739-83990758 None:intergenic 40.0%
GAAAGAGACAATCTTTGGCA+AGG + chr4_1:83991004-83991023 None:intergenic 40.0%
! ATTCAGTTGTGAAGTGGGTT+TGG - chr4_1:83991148-83991167 Msa0579320:CDS 40.0%
CTCTTGTCTACACCATATCT+TGG - chr4_1:83991187-83991206 Msa0579320:CDS 40.0%
! TCTGGTGGTGTATTCTTTGA+AGG - chr4_1:83991245-83991264 Msa0579320:CDS 40.0%
AGGTTATAGCACAAAGAACG+TGG - chr4_1:83991265-83991284 Msa0579320:CDS 40.0%
! CAAAGAACGTGGTTTTCTGT+TGG - chr4_1:83991276-83991295 Msa0579320:CDS 40.0%
TTTCTTGAGGAAGTTGGAGA+TGG - chr4_1:83991322-83991341 Msa0579320:CDS 40.0%
!! AAACCTAGAGTTTGCTGATG+AGG - chr4_1:83991348-83991367 Msa0579320:CDS 40.0%
TGATAGAGTTGTGGGGGTTA+CGG + chr4_1:83985293-83985312 None:intergenic 45.0%
!! CCCGGATTTTGATAGAGTTG+TGG + chr4_1:83985302-83985321 None:intergenic 45.0%
TCCTCCTACGACAACTTCAT+TGG - chr4_1:83985400-83985419 Msa0579320:intron 45.0%
GTAGCCAATGAAGTTGTCGT+AGG + chr4_1:83985407-83985426 None:intergenic 45.0%
TCCTCTCTAAATCATCCACC+TGG - chr4_1:83985431-83985450 Msa0579320:intron 45.0%
AAATCATCCACCTGGCAATC+CGG - chr4_1:83985439-83985458 Msa0579320:intron 45.0%
CTCCGTTCCAACTACATCTT+CGG - chr4_1:83985493-83985512 Msa0579320:intron 45.0%
! TGATTTCGGATTGGGTCCAA+TGG + chr4_1:83985525-83985544 None:intergenic 45.0%
! GATCAGGGTTGATTTCGGAT+TGG + chr4_1:83985534-83985553 None:intergenic 45.0%
GTGGTAAGGGGTTATTGTCA+TGG + chr4_1:83985564-83985583 None:intergenic 45.0%
! AGGTTTCCGGTTTGTGGTAA+GGG + chr4_1:83985577-83985596 None:intergenic 45.0%
! AAGGTTTCCGGTTTGTGGTA+AGG + chr4_1:83985578-83985597 None:intergenic 45.0%
AGAAATGGCGAGAAGGTTTC+CGG + chr4_1:83985590-83985609 None:intergenic 45.0%
! GTTTGTTTCGGGTAAAGGAC+CGG - chr4_1:83985621-83985640 Msa0579320:intron 45.0%
CGGATGAAGAAGATGCTATG+CGG - chr4_1:83985665-83985684 Msa0579320:intron 45.0%
GGATGAAGAAGATGCTATGC+GGG - chr4_1:83985666-83985685 Msa0579320:intron 45.0%
TACCTCACATACGTCTCCTT+CGG + chr4_1:83985712-83985731 None:intergenic 45.0%
AAGGAGACGTATGTGAGGTA+TGG - chr4_1:83985712-83985731 Msa0579320:intron 45.0%
AGGAGACGTATGTGAGGTAT+GGG - chr4_1:83985713-83985732 Msa0579320:intron 45.0%
ATGTCATATGGGAGGTCTTG+CGG - chr4_1:83985744-83985763 Msa0579320:intron 45.0%
!! TAACGAGAGTGTTGGTTGGA+GGG - chr4_1:83985816-83985835 Msa0579320:intron 45.0%
! TCATCGATTGCCGTTTGAGT+TGG - chr4_1:83986667-83986686 Msa0579320:intron 45.0%
! TACGGTTGACTAGCTGACAA+GGG + chr4_1:83986721-83986740 None:intergenic 45.0%
TCCGATGTGTGACACAAAAG+CGG + chr4_1:83987268-83987287 None:intergenic 45.0%
GGAGACATTAGTTACGCAAG+TGG - chr4_1:83987285-83987304 Msa0579320:intron 45.0%
AAGTGGTTATGCGTGGTTGT+GGG - chr4_1:83987302-83987321 Msa0579320:intron 45.0%
GTGGCATACCATGTATGCAT+TGG - chr4_1:83987363-83987382 Msa0579320:intron 45.0%
!! ATGATTGGCCTTTACAGCCA+TGG - chr4_1:83987397-83987416 Msa0579320:intron 45.0%
GCGGTGTACCCTATAGTTTA+AGG - chr4_1:83987463-83987482 Msa0579320:intron 45.0%
! GTAGGTTCTGACGAATTTCC+AGG + chr4_1:83987498-83987517 None:intergenic 45.0%
GGAAATTCGTCAGAACCTAC+TGG - chr4_1:83987498-83987517 Msa0579320:intron 45.0%
TTCTCTCAACGCAACATCCT+TGG + chr4_1:83987730-83987749 None:intergenic 45.0%
TGAGCACTTGGAACCTCTAT+TGG - chr4_1:83987758-83987777 Msa0579320:intron 45.0%
ACAATGTGAACCTTGCCCTT+TGG - chr4_1:83987787-83987806 Msa0579320:intron 45.0%
CAATGTGAACCTTGCCCTTT+GGG - chr4_1:83987788-83987807 Msa0579320:intron 45.0%
AATGTGAACCTTGCCCTTTG+GGG - chr4_1:83987789-83987808 Msa0579320:intron 45.0%
TCTATGAACATGGCCCCAAA+GGG + chr4_1:83987805-83987824 None:intergenic 45.0%
ATCTATGAACATGGCCCCAA+AGG + chr4_1:83987806-83987825 None:intergenic 45.0%
TACACTTGTGGAAATGGCGT+GGG - chr4_1:83987852-83987871 Msa0579320:intron 45.0%
CGTTCATCTTGTGATTGGCA+TGG - chr4_1:83987902-83987921 Msa0579320:intron 45.0%
ATCTTGTGATTGGCATGGCA+GGG - chr4_1:83987907-83987926 Msa0579320:intron 45.0%
TCCATCTGGAAAACAAGACC+GGG - chr4_1:83987942-83987961 Msa0579320:intron 45.0%
ATAGGCTTTGCTTCTGGTCT+TGG - chr4_1:83988302-83988321 Msa0579320:intron 45.0%
! TCCCACATTTTCTGCTCATG+TGG - chr4_1:83988345-83988364 Msa0579320:intron 45.0%
ATTCTAATCGGGAACCACCA+AGG + chr4_1:83989876-83989895 None:intergenic 45.0%
GGGTGACATTGAAGTTACCT+TGG - chr4_1:83991058-83991077 Msa0579320:CDS 45.0%
ATATAGTGAGCTAGGTGGCA+TGG - chr4_1:83991106-83991125 Msa0579320:CDS 45.0%
TATAGTGAGCTAGGTGGCAT+GGG - chr4_1:83991107-83991126 Msa0579320:CDS 45.0%
GGATCAATTTCAACCCCATG+TGG - chr4_1:83991208-83991227 Msa0579320:CDS 45.0%
ATTTCAACCCCATGTGGAAC+TGG - chr4_1:83991214-83991233 Msa0579320:CDS 45.0%
ACATGCATCCAGTTCCACAT+GGG + chr4_1:83991225-83991244 None:intergenic 45.0%
AACATGCATCCAGTTCCACA+TGG + chr4_1:83991226-83991245 None:intergenic 45.0%
! ACAATGGTGGAGGTTTCTTG+AGG - chr4_1:83991309-83991328 Msa0579320:CDS 45.0%
TGGAGGTTTCTTGAGGAAGT+TGG - chr4_1:83991316-83991335 Msa0579320:CDS 45.0%
TCTCCTCATCAGCAAACTCT+AGG + chr4_1:83991354-83991373 None:intergenic 45.0%
!! TAGAGTTTGCTGATGAGGAG+AGG - chr4_1:83991353-83991372 Msa0579320:CDS 45.0%
!!! ATATACATTTTAAAAATTAT+AGG + chr4_1:83986096-83986115 None:intergenic 5.0%
!! TAAAAAAAAAAATATATTTG+AGG - chr4_1:83986185-83986204 Msa0579320:intron 5.0%
!!! ATTTATAATATTTTTTATGT+TGG + chr4_1:83986542-83986561 None:intergenic 5.0%
!! AAAAAAAAATAAAAAATAGA+CGG + chr4_1:83989751-83989770 None:intergenic 5.0%
!! AAAAAAATAAAAATAAAGAA+AGG - chr4_1:83990947-83990966 Msa0579320:CDS 5.0%
GGGTTTCGATTGGACAAGGT+TGG + chr4_1:83985263-83985282 None:intergenic 50.0%
AGTTGTGGGGGTTACGGTTA+GGG + chr4_1:83985287-83985306 None:intergenic 50.0%
! CTCTGAGGGTGATTGGATAC+CGG + chr4_1:83985347-83985366 None:intergenic 50.0%
!! AGTCTAGCTCTGAGGGTGAT+TGG + chr4_1:83985354-83985373 None:intergenic 50.0%
!! GCTACGAAGTCTAGCTCTGA+GGG + chr4_1:83985361-83985380 None:intergenic 50.0%
!! TGCTACGAAGTCTAGCTCTG+AGG + chr4_1:83985362-83985381 None:intergenic 50.0%
AAGTTGTCGTAGGAGGACGT+GGG + chr4_1:83985397-83985416 None:intergenic 50.0%
GCCAATGAAGTTGTCGTAGG+AGG + chr4_1:83985404-83985423 None:intergenic 50.0%
GCCAGGTGGATGATTTAGAG+AGG + chr4_1:83985435-83985454 None:intergenic 50.0%
!! TTGGAACGGAGGTTGATGAG+GGG + chr4_1:83985484-83985503 None:intergenic 50.0%
!! GTTGGAACGGAGGTTGATGA+GGG + chr4_1:83985485-83985504 None:intergenic 50.0%
!! AGTTGGAACGGAGGTTGATG+AGG + chr4_1:83985486-83985505 None:intergenic 50.0%
CGAAGATGTAGTTGGAACGG+AGG + chr4_1:83985495-83985514 None:intergenic 50.0%
! GGTTTCCGGTTTGTGGTAAG+GGG + chr4_1:83985576-83985595 None:intergenic 50.0%
CCTCTTCAGAAATGGCGAGA+AGG + chr4_1:83985597-83985616 None:intergenic 50.0%
! CCTTCTCGCCATTTCTGAAG+AGG - chr4_1:83985594-83985613 Msa0579320:intron 50.0%
! TGCGGGTTATGTATGTGACG+AGG - chr4_1:83985683-83985702 Msa0579320:intron 50.0%
! GCGGGTTATGTATGTGACGA+GGG - chr4_1:83985684-83985703 Msa0579320:intron 50.0%
ATCCGAAGGAGACGTATGTG+AGG - chr4_1:83985707-83985726 Msa0579320:intron 50.0%
GGAGACGTATGTGAGGTATG+GGG - chr4_1:83985714-83985733 Msa0579320:intron 50.0%
! GCGTGTGAAGAGGTATGAGA+GGG - chr4_1:83985771-83985790 Msa0579320:intron 50.0%
CAACCAACACTCTCGTTAGC+AGG + chr4_1:83985814-83985833 None:intergenic 50.0%
!! CTGCTAACGAGAGTGTTGGT+TGG - chr4_1:83985812-83985831 Msa0579320:intron 50.0%
!! CTAACGAGAGTGTTGGTTGG+AGG - chr4_1:83985815-83985834 Msa0579320:intron 50.0%
! CTACGGTTGACTAGCTGACA+AGG + chr4_1:83986722-83986741 None:intergenic 50.0%
!! GAGTGATGGTGTTGTGTACC+AGG - chr4_1:83987047-83987066 Msa0579320:intron 50.0%
!! GATGGTGTTGTGTACCAGGT+TGG - chr4_1:83987051-83987070 Msa0579320:intron 50.0%
CTAGAGCTTCAACATCACGG+AGG + chr4_1:83987236-83987255 None:intergenic 50.0%
CTCCGTGATGTTGAAGCTCT+AGG - chr4_1:83987234-83987253 Msa0579320:intron 50.0%
CCGATGTGTGACACAAAAGC+GGG + chr4_1:83987267-83987286 None:intergenic 50.0%
!! CCCGCTTTTGTGTCACACAT+CGG - chr4_1:83987264-83987283 Msa0579320:intron 50.0%
GTTACGCAAGTGGTTATGCG+TGG - chr4_1:83987295-83987314 Msa0579320:intron 50.0%
CAAGTGGTTATGCGTGGTTG+TGG - chr4_1:83987301-83987320 Msa0579320:intron 50.0%
AAAGATGGAGGTGGTGAGTG+CGG - chr4_1:83987444-83987463 Msa0579320:intron 50.0%
GCTGGAGCTATAGTTCCAGT+AGG + chr4_1:83987516-83987535 None:intergenic 50.0%
CTACACTTGTGGAAATGGCG+TGG - chr4_1:83987851-83987870 Msa0579320:intron 50.0%
CATCTTGTGATTGGCATGGC+AGG - chr4_1:83987906-83987925 Msa0579320:intron 50.0%
GGCAAGACAAGCAATCCATC+TGG - chr4_1:83987928-83987947 Msa0579320:intron 50.0%
!!! ACCCGGTCTTGTTTTCCAGA+TGG + chr4_1:83987946-83987965 None:intergenic 50.0%
ATCGAGTCATTGGGATGACC+CGG + chr4_1:83987963-83987982 None:intergenic 50.0%
TTGTATCGTGGGGGTGAGTT+TGG - chr4_1:83988005-83988024 Msa0579320:intron 50.0%
TGTATCGTGGGGGTGAGTTT+GGG - chr4_1:83988006-83988025 Msa0579320:intron 50.0%
TGGTGAGGTGCATGACACAA+TGG - chr4_1:83988088-83988107 Msa0579320:intron 50.0%
TAGGAATCAGCCAACTCGTG+TGG + chr4_1:83989598-83989617 None:intergenic 50.0%
GATACGTCCTAGACTTTCGG+TGG - chr4_1:83990660-83990679 Msa0579320:intron 50.0%
! TGAAGTGGGTTTGGTCCAGA+GGG - chr4_1:83991157-83991176 Msa0579320:CDS 50.0%
! GACAAGAGACTAGTTCCCTC+TGG + chr4_1:83991175-83991194 None:intergenic 50.0%
CATGCATCCAGTTCCACATG+GGG + chr4_1:83991224-83991243 None:intergenic 50.0%
GTGGAACTGGATGCATGTTC+TGG - chr4_1:83991227-83991246 Msa0579320:CDS 50.0%
GAACTGGATGCATGTTCTGG+TGG - chr4_1:83991230-83991249 Msa0579320:CDS 50.0%
GGGAGGGTTTCGATTGGACA+AGG + chr4_1:83985267-83985286 None:intergenic 55.0%
CGGTTAGGGAGGGTTTCGAT+TGG + chr4_1:83985273-83985292 None:intergenic 55.0%
GAGTTGTGGGGGTTACGGTT+AGG + chr4_1:83985288-83985307 None:intergenic 55.0%
ACCGTCACACTAAGGTGGTC+CGG - chr4_1:83985325-83985344 Msa0579320:CDS 55.0%
ACCGGACCACCTTAGTGTGA+CGG + chr4_1:83985329-83985348 None:intergenic 55.0%
GAAGTTGTCGTAGGAGGACG+TGG + chr4_1:83985398-83985417 None:intergenic 55.0%
!! TGGAACGGAGGTTGATGAGG+GGG + chr4_1:83985483-83985502 None:intergenic 55.0%
! GCGAGAAGGTTTCCGGTTTG+TGG + chr4_1:83985583-83985602 None:intergenic 55.0%
GTATGTGACGAGGGATCCGA+AGG - chr4_1:83985693-83985712 Msa0579320:intron 55.0%
TCATATGGGAGGTCTTGCGG+TGG - chr4_1:83985747-83985766 Msa0579320:intron 55.0%
! CGCGTGTGAAGAGGTATGAG+AGG - chr4_1:83985770-83985789 Msa0579320:intron 55.0%
! GCTCCTGCTAACGAGAGTGT+TGG - chr4_1:83985808-83985827 Msa0579320:intron 55.0%
!! AGTGTTGGTTGGAGGGATCC+AGG - chr4_1:83985823-83985842 Msa0579320:intron 55.0%
ATCCTTTGTCCCCTGCTCTC+CGG + chr4_1:83987878-83987897 None:intergenic 55.0%
GGCTACAAAGCAGAAGCTCG+TGG - chr4_1:83988043-83988062 Msa0579320:intron 55.0%
!! GCTTCTGGTCTTGGCCAATG+AGG - chr4_1:83988311-83988330 Msa0579320:intron 55.0%
GTCTTGGCCAATGAGGTCTC+AGG - chr4_1:83988318-83988337 Msa0579320:intron 55.0%
GGAGTTGCCTGAGACCTCAT+TGG + chr4_1:83988328-83988347 None:intergenic 55.0%
GGAAATGGAGCATGCCACAG+CGG + chr4_1:83988415-83988434 None:intergenic 55.0%
TGTGGAGCCACCGAAAGTCT+AGG + chr4_1:83990670-83990689 None:intergenic 55.0%
! GTGAAGTGGGTTTGGTCCAG+AGG - chr4_1:83991156-83991175 Msa0579320:CDS 55.0%
GTGGGGGTTACGGTTAGGGA+GGG + chr4_1:83985283-83985302 None:intergenic 60.0%
TGTGGGGGTTACGGTTAGGG+AGG + chr4_1:83985284-83985303 None:intergenic 60.0%
CCTTAGTGTGACGGTGTCCC+CGG + chr4_1:83985320-83985339 None:intergenic 60.0%
GGGACACCGTCACACTAAGG+TGG - chr4_1:83985320-83985339 Msa0579320:CDS 60.0%
TTGTCGTAGGAGGACGTGGG+TGG + chr4_1:83985394-83985413 None:intergenic 60.0%
TCCACCTGGCAATCCGGTTC+CGG - chr4_1:83985445-83985464 Msa0579320:intron 60.0%
!! ACGGAGGTTGATGAGGGGGA+GGG + chr4_1:83985479-83985498 None:intergenic 60.0%
!! AACGGAGGTTGATGAGGGGG+AGG + chr4_1:83985480-83985499 None:intergenic 60.0%
GAACATGGCCCCAAAGGGCA+AGG + chr4_1:83987800-83987819 None:intergenic 60.0%
CTTGTGGAAATGGCGTGGGC+CGG - chr4_1:83987856-83987875 Msa0579320:intron 60.0%
CCGGGGACACCGTCACACTA+AGG - chr4_1:83985317-83985336 Msa0579320:CDS 65.0%
TGTGCCGGAACCGGATTGCC+AGG + chr4_1:83985452-83985471 None:intergenic 65.0%
! GAGGGAGAGTGTGCCGGAAC+CGG + chr4_1:83985461-83985480 None:intergenic 65.0%
TTGCGGTGGCGCGTGTGAAG+AGG - chr4_1:83985761-83985780 Msa0579320:intron 65.0%
TGCTGCAGCAGCTACCGCTG+TGG - chr4_1:83988398-83988417 Msa0579320:intron 65.0%
GCCGGAACCGGATTGCCAGG+TGG + chr4_1:83985449-83985468 None:intergenic 70.0%
! GAGGGGGAGGGAGAGTGTGC+CGG + chr4_1:83985467-83985486 None:intergenic 70.0%
AATGGCGTGGGCCGGAGAGC+AGG - chr4_1:83987864-83987883 Msa0579320:intron 70.0%
ATGGCGTGGGCCGGAGAGCA+GGG - chr4_1:83987865-83987884 Msa0579320:intron 70.0%
GGCCGGAGAGCAGGGGACAA+AGG - chr4_1:83987873-83987892 Msa0579320:intron 70.0%
TGGCGTGGGCCGGAGAGCAG+GGG - chr4_1:83987866-83987885 Msa0579320:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83985211 83991417 83985211 ID=Msa0579320;Name=Msa0579320
chr4_1 mRNA 83985211 83991417 83985211 ID=Msa0579320-mRNA-1;Parent=Msa0579320;Name=Msa0579320-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|1|1|3|0|620
chr4_1 exon 83990725 83991417 83990725 ID=Msa0579320-mRNA-1:exon:30784;Parent=Msa0579320-mRNA-1
chr4_1 exon 83988534 83989559 83988534 ID=Msa0579320-mRNA-1:exon:30783;Parent=Msa0579320-mRNA-1
chr4_1 exon 83985211 83985354 83985211 ID=Msa0579320-mRNA-1:exon:30782;Parent=Msa0579320-mRNA-1
chr4_1 CDS 83990725 83991417 83990725 ID=Msa0579320-mRNA-1:cds;Parent=Msa0579320-mRNA-1
chr4_1 CDS 83988534 83989559 83988534 ID=Msa0579320-mRNA-1:cds;Parent=Msa0579320-mRNA-1
chr4_1 CDS 83985211 83985354 83985211 ID=Msa0579320-mRNA-1:cds;Parent=Msa0579320-mRNA-1
Gene Sequence

>Msa0579320

ATGATTCCTTGCACAATACTCTTCCTCTATCTTTCAATAATCTTCAACTCCAACCTTGTCCAATCGAAACCCTCCCTAACCGTAACCCCCACAACTCTATCAAAATCCGGGGACACCGTCACACTAAGGTGGTCCGGTATCCAATCACCCTCAGAGCTAGACTTCGTAGCAATCTACTCACCACCCACGTCCTCCTACGACAACTTCATTGGCTACCTCTTCCTCTCTAAATCATCCACCTGGCAATCCGGTTCCGGCACACTCTCCCTCCCCCTCATCAACCTCCGTTCCAACTACATCTTCGGTATCTTCCATTGGACCCAATCCGAAATCAACCCTGATCGTTATGACCATGACAATAACCCCTTACCACAAACCGGAAACCTTCTCGCCATTTCTGAAGAGGTTTCGTTTGTTTCGGGTAAAGGACCGGAGCAGATTCATCTTGCTTTTGCGGATGAAGAAGATGCTATGCGGGTTATGTATGTGACGAGGGATCCGAAGGAGACGTATGTGAGGTATGGGGAGAGAAAATGTCATATGGGAGGTCTTGCGGTGGCGCGTGTGAAGAGGTATGAGAGGGAGCATATGTGTGATGCTCCTGCTAACGAGAGTGTTGGTTGGAGGGATCCAGGTTATATACATGATGCTTTGATCACTAGTTTAAAGAAAGGAAGAAGATACTACTATAAGGTTGGAAATAAAAATGGAGGTTGGAGTGCAACTCATAGCTTTGTGTCAAGGAATAGTGATTCAAATGAAACAATAGCTTTCATTTTTGGTGACATGGGAACAGCTACACCATATAATACATTTTTGCGTACACAAGAAGAAAGCATATCAACAGTGAAGTGGATCCTCCGTGATGTTGAAGCTCTAGGAAACAAACCCGCTTTTGTGTCACACATCGGAGACATTAGTTACGCAAGTGGTTATGCGTGGTTGTGGGATCATTTTTTCGCACAAATTGAACCTGTTGCAACAAAAGTGGCATACCATGTATGCATTGGAAATCATGAGTATGATTGGCCTTTACAGCCATGGAAACCTAATTGGACTAATTATGGAAAAGATGGAGGTGGTGAGTGCGGTGTACCCTATAGTTTAAGGTTCAACATGCCTGGAAATTCGTCAGAACCTACTGGAACTATAGCTCCAGCAACTAGAAATCTTTATTACTCATTTGATATGGGTGTAGTACATTTTGTTTATATATCAACAGAGACCAATTTTCTTCTTGGGAGCAACCAGTATAACTTCTTGAAGCATGATTTGGAATCAGTTGACAGGAACAAGACTCCTTTTGTAGTAGTTCAAGGGCACAGACCCATGTACACAACAATCAATGGAACCAAGGATGTTGCGTTGAGAGAAAAGATGCTTGAGCACTTGGAACCTCTATTGGTGAACAACAATGTGAACCTTGCCCTTTGGGGCCATGTTCATAGATACGAGAGATTTTGTCCACTGAATAACTACACTTGTGGAAATGGCGTGGGCCGGAGAGCAGGGGACAAAGGATATACCGTTCATCTTGTGATTGGCATGGCAGGGCAAGACAAGCAATCCATCTGGAAAACAAGACCGGGTCATCCCAATGACTCGATCTTTCCTCAACCAAAACAGTCTTTGTATCGTGGGGGTGAGTTTGGGTACATTAGACTAGTGGCTACAAAGCAGAAGCTCGTGGTTTCTTATGTTGGAAATCATGATGGTGAGCACAAAGAACGTGGTTTTCTGTTGGAAAAAGAATTACAATGGTGGAGGTTTCTTGAGGAAGTTGGAGATGGAAGAAACCTAGAGTTTGCTGATGAGGAGAGGAAGAAGAAAAAGAAGAGGAGAAGCAAGAATGAAGAAGAATGA
Protein sequence

>Msa0579320

MIPCTILFLYLSIIFNSNLVQSKPSLTVTPTTLSKSGDTVTLRWSGIQSPSELDFVAIYSPPTSSYDNFIGYLFLSKSSTWQSGSGTLSLPLINLRSNYIFGIFHWTQSEINPDRYDHDNNPLPQTGNLLAISEEVSFVSGKGPEQIHLAFADEEDAMRVMYVTRDPKETYVRYGERKCHMGGLAVARVKRYEREHMCDAPANESVGWRDPGYIHDALITSLKKGRRYYYKVGNKNGGWSATHSFVSRNSDSNETIAFIFGDMGTATPYNTFLRTQEESISTVKWILRDVEALGNKPAFVSHIGDISYASGYAWLWDHFFAQIEPVATKVAYHVCIGNHEYDWPLQPWKPNWTNYGKDGGGECGVPYSLRFNMPGNSSEPTGTIAPATRNLYYSFDMGVVHFVYISTETNFLLGSNQYNFLKHDLESVDRNKTPFVVVQGHRPMYTTINGTKDVALREKMLEHLEPLLVNNNVNLALWGHVHRYERFCPLNNYTCGNGVGRRAGDKGYTVHLVIGMAGQDKQSIWKTRPGHPNDSIFPQPKQSLYRGGEFGYIRLVATKQKLVVSYVGNHDGEHKERGFLLEKELQWWRFLEEVGDGRNLEFADEERKKKKKRRSKNEEE*