AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579510 MtrunA17_Chr8g0382071 97.946 779 16 0 1 779 1 779 0.0 1561
Msa0579510 MtrunA17_Chr1g0173111 77.161 775 175 1 5 779 4 776 0.0 1229
Msa0579510 MtrunA17_Chr5g0401211 63.265 784 278 7 1 779 1 779 0.0 961
Msa0579510 MtrunA17_Chr4g0020551 68.137 703 216 5 82 779 15 714 0.0 959
Msa0579510 MtrunA17_Chr3g0134771 61.480 784 294 6 1 779 1 781 0.0 931
Msa0579510 MtrunA17_Chr8g0355421 61.175 783 280 5 5 779 4 770 0.0 920
Msa0579510 MtrunA17_Chr4g0054021 62.625 701 253 4 82 779 8 702 0.0 855
Msa0579510 MtrunA17_Chr2g0298871 45.926 810 370 16 14 779 46 831 0.0 602
Msa0579510 MtrunA17_Chr4g0002331 45.614 798 387 14 12 779 64 844 0.0 595
Msa0579510 MtrunA17_Chr6g0456201 44.134 716 360 15 94 779 70 775 7.76e-180 542
Msa0579510 MtrunA17_Chr7g0260401 41.176 799 419 16 15 779 27 808 4.02e-164 503
Msa0579510 MtrunA17_Chr2g0334231 46.552 464 222 7 12 462 54 504 6.53e-109 342
Msa0579510 MtrunA17_Chr8g0340271 47.884 378 184 6 94 458 69 446 1.80e-107 338
Msa0579510 MtrunA17_Chr7g0263361 31.141 745 414 21 119 779 31 760 7.17e-73 257
Msa0579510 MtrunA17_Chr8g0346461 29.388 752 425 22 119 779 19 755 4.28e-67 241
Msa0579510 MtrunA17_Chr2g0334221 45.238 294 141 8 493 771 49 337 6.74e-64 217
Msa0579510 MtrunA17_Chr8g0340261 42.308 338 165 11 460 779 2 327 5.68e-62 218
Msa0579510 MtrunA17_Chr3g0134951 30.632 728 423 20 120 779 3 716 4.26e-60 220
Msa0579510 MtrunA17_Chr4g0005551 26.836 708 443 21 99 770 61 729 4.96e-52 196
Msa0579510 MtrunA17_Chr5g0447521 26.194 691 438 18 93 751 95 745 5.51e-49 187
Msa0579510 MtrunA17_Chr4g0072131 25.778 675 398 21 119 775 24 613 3.02e-44 172
Msa0579510 MtrunA17_Chr4g0065481 25.811 678 394 23 116 772 19 608 2.72e-43 169
Msa0579510 MtrunA17_Chr2g0298031 25.000 676 403 19 119 775 26 616 8.46e-43 167
Msa0579510 MtrunA17_Chr1g0147981 26.324 661 387 24 132 775 50 627 1.01e-42 167
Msa0579510 MtrunA17_Chr8g0335291 26.372 656 392 22 132 772 35 614 1.05e-42 167
Msa0579510 MtrunA17_Chr4g0059961 25.519 674 407 21 116 775 22 614 1.09e-41 164
Msa0579510 MtrunA17_Chr8g0365021 24.885 655 404 19 132 775 103 680 7.02e-41 162
Msa0579510 MtrunA17_Chr2g0333721 24.444 675 407 19 119 775 19 608 2.94e-40 159
Msa0579510 MtrunA17_Chr3g0138931 25.557 673 402 22 119 775 21 610 5.91e-40 159
Msa0579510 MtrunA17_Chr1g0148031 25.228 658 398 20 132 775 33 610 6.35e-40 159
Msa0579510 MtrunA17_Chr2g0304941 25.723 657 396 23 132 775 34 611 4.18e-39 156
Msa0579510 MtrunA17_Chr6g0452721 24.772 658 393 23 133 772 36 609 8.16e-36 145
Msa0579510 MtrunA17_Chr8g0381711 23.455 712 431 22 106 775 4 643 3.74e-34 140
Msa0579510 MtrunA17_Chr7g0276551 25.532 376 227 10 401 772 46 372 2.06e-26 115
Msa0579510 MtrunA17_Chr2g0297051 24.682 551 317 17 234 781 470 925 2.81e-22 102
Msa0579510 MtrunA17_Chr3g0131151 23.659 727 401 29 135 772 167 828 8.20e-22 101
Msa0579510 MtrunA17_Chr8g0363911 23.214 560 249 16 380 778 340 879 2.74e-18 90.1
Msa0579510 MtrunA17_Chr5g0415271 23.387 496 214 12 429 778 384 859 3.14e-16 83.6
Msa0579510 MtrunA17_Chr3g0078371 22.925 506 256 15 396 778 440 934 1.84e-15 81.3
Msa0579510 MtrunA17_Chr0c05g0492131 22.285 534 255 14 390 778 362 880 1.86e-15 81.3
Msa0579510 MtrunA17_Chr2g0324791 25.287 435 197 15 441 778 370 773 3.15e-15 80.1
Msa0579510 MtrunA17_Chr4g0020541 47.761 67 35 0 1 67 1 67 2.07e-14 68.9
Msa0579510 MtrunA17_Chr2g0329991 28.151 238 121 6 500 697 545 772 2.13e-12 71.2
Msa0579510 MtrunA17_Chr8g0374331 33.582 134 60 3 648 781 42 146 3.06e-12 67.4
Msa0579510 MtrunA17_Chr8g0355251 22.704 392 204 13 392 698 388 765 3.11e-12 70.5
Msa0579510 MtrunA17_Chr8g0374391 33.582 134 60 3 648 781 35 139 3.12e-12 67.4
Msa0579510 MtrunA17_Chr8g0342811 21.932 383 195 8 488 778 534 904 1.46e-11 68.6
Msa0579510 MtrunA17_Chr5g0397621 35.878 131 55 4 651 781 696 797 1.64e-11 68.2
Msa0579510 MtrunA17_Chr3g0091611 22.821 390 205 12 390 697 363 738 2.89e-11 67.4
Msa0579510 MtrunA17_Chr7g0244991 24.038 416 201 17 396 711 466 866 6.13e-11 66.2
Msa0579510 MtrunA17_Chr4g0052521 35.821 134 57 5 648 781 789 893 6.22e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579510 AT2G41560.1 70.013 777 226 5 4 779 3 773 0.0 1108
Msa0579510 AT3G57330.1 70.180 778 220 6 4 779 3 770 0.0 1107
Msa0579510 AT3G57330.2 70.759 725 200 6 57 779 1 715 0.0 1039
Msa0579510 AT2G41560.2 71.492 677 186 5 104 779 1 671 0.0 983
Msa0579510 AT2G41560.3 71.492 677 186 5 104 779 1 671 0.0 983
Msa0579510 AT2G41560.4 71.492 677 186 5 104 779 1 671 0.0 983
Msa0579510 AT1G27770.4 61.352 784 296 5 1 779 1 782 0.0 939
Msa0579510 AT1G27770.1 61.352 784 296 5 1 779 1 782 0.0 939
Msa0579510 AT4G37640.1 60.792 783 299 5 1 779 1 779 0.0 930
Msa0579510 AT2G22950.1 60.842 784 298 5 1 779 1 780 0.0 925
Msa0579510 AT1G27770.3 62.767 701 256 3 82 779 21 719 0.0 866
Msa0579510 AT1G27770.2 53.994 726 320 8 1 721 1 717 0.0 719
Msa0579510 AT1G27770.2 77.027 74 17 0 706 779 635 708 2.82e-28 122
Msa0579510 AT4G29900.1 47.222 792 377 13 14 779 37 813 0.0 624
Msa0579510 AT4G29900.2 47.222 792 377 13 14 779 37 813 0.0 624
Msa0579510 AT5G57110.1 46.992 798 376 17 9 779 32 809 0.0 615
Msa0579510 AT5G57110.3 46.992 798 376 17 9 779 32 809 0.0 615
Msa0579510 AT5G57110.2 46.992 798 376 17 9 779 32 809 0.0 615
Msa0579510 AT3G21180.1 46.742 798 371 16 14 779 51 826 0.0 609
Msa0579510 AT3G63380.1 42.222 765 410 14 33 779 25 775 7.51e-166 507
Msa0579510 AT3G22910.1 43.159 709 362 13 94 779 81 771 2.14e-160 492
Msa0579510 AT5G53010.2 33.283 667 404 16 76 720 122 769 1.08e-91 305
Msa0579510 AT5G53010.1 32.162 740 416 19 76 777 122 813 7.90e-89 302
Msa0579510 AT1G07670.2 31.241 733 424 19 119 779 31 755 2.32e-69 248
Msa0579510 AT1G07670.1 31.241 733 424 19 119 779 31 755 2.32e-69 248
Msa0579510 AT4G00900.2 29.458 757 419 21 119 779 14 751 7.80e-68 243
Msa0579510 AT4G00900.1 29.458 757 419 21 119 779 14 751 7.80e-68 243
Msa0579510 AT1G07810.1 31.053 731 410 19 128 779 40 755 1.51e-67 243
Msa0579510 AT1G10130.1 31.301 738 404 25 120 779 3 715 1.51e-65 236
Msa0579510 AT1G80660.1 25.684 658 395 17 132 775 36 613 5.67e-46 177
Msa0579510 AT1G80660.3 25.684 658 395 17 132 775 36 613 7.55e-46 177
Msa0579510 AT1G80660.4 25.684 658 395 17 132 775 36 613 8.68e-46 177
Msa0579510 AT3G60330.4 26.347 668 400 21 116 772 19 605 2.95e-44 172
Msa0579510 AT3G60330.3 26.347 668 400 21 116 772 19 605 2.95e-44 172
Msa0579510 AT3G60330.2 26.198 668 401 21 116 772 19 605 7.11e-44 171
Msa0579510 AT3G60330.1 26.198 668 401 21 116 772 19 605 7.11e-44 171
Msa0579510 AT2G07560.1 25.964 674 391 21 119 772 22 607 9.45e-44 171
Msa0579510 AT1G80660.2 26.958 549 318 17 237 775 9 484 3.80e-43 168
Msa0579510 AT4G30190.1 25.595 672 403 19 119 775 19 608 1.71e-42 167
Msa0579510 AT3G42640.1 25.744 672 402 23 119 775 22 611 8.02e-42 165
Msa0579510 AT5G57350.4 26.558 674 394 22 119 775 20 609 2.59e-41 163
Msa0579510 AT5G57350.2 26.558 674 394 22 119 775 20 609 2.59e-41 163
Msa0579510 AT5G57350.1 26.558 674 394 22 119 775 20 609 2.59e-41 163
Msa0579510 AT1G17260.1 25.419 657 397 16 132 775 39 615 3.57e-40 160
Msa0579510 AT2G24520.3 25.000 652 401 20 132 772 13 587 5.11e-40 159
Msa0579510 AT2G24520.1 25.000 652 401 20 132 772 13 587 5.11e-40 159
Msa0579510 AT2G24520.2 25.000 652 401 20 132 772 76 650 8.66e-40 159
Msa0579510 AT2G18960.1 25.000 672 407 19 119 775 19 608 2.03e-39 157
Msa0579510 AT5G62670.1 26.331 676 399 24 116 775 20 612 3.53e-39 157
Msa0579510 AT4G30190.2 24.752 707 398 20 119 775 19 641 8.72e-39 155
Msa0579510 AT3G47950.1 25.964 674 404 23 116 775 24 616 6.17e-38 153
Msa0579510 AT3G47950.2 25.964 674 404 23 116 775 24 616 6.17e-38 153
Msa0579510 AT2G18960.3 25.319 549 327 14 237 775 69 544 4.84e-37 150
Msa0579510 AT2G18960.2 25.319 549 327 14 237 775 69 544 4.84e-37 150
Msa0579510 AT5G57350.3 25.916 382 225 10 401 775 17 347 1.70e-26 116
Msa0579510 AT2G24520.4 25.594 379 224 12 401 772 17 344 2.14e-26 115
Msa0579510 AT5G23630.1 23.004 739 392 30 135 772 167 829 7.01e-21 99.0
Msa0579510 AT1G59820.1 25.237 317 140 7 547 778 562 866 1.46e-17 88.2
Msa0579510 AT1G68710.3 25.199 377 172 11 500 778 527 891 2.17e-15 81.3
Msa0579510 AT1G68710.2 25.199 377 172 11 500 778 527 891 2.43e-15 81.3
Msa0579510 AT1G68710.1 25.199 377 172 11 500 778 527 891 2.43e-15 81.3
Msa0579510 AT4G33520.3 29.615 260 162 5 254 511 409 649 1.78e-13 75.1
Msa0579510 AT4G33520.2 27.152 302 196 6 212 511 370 649 1.87e-13 74.7
Msa0579510 AT4G11730.1 21.458 480 300 13 119 590 23 433 1.98e-13 74.7
Msa0579510 AT1G17500.2 23.913 368 175 11 504 778 533 888 9.27e-13 72.8
Msa0579510 AT1G17500.1 23.913 368 175 11 504 778 533 888 9.27e-13 72.8
Msa0579510 AT1G26130.1 22.453 481 218 14 441 778 419 887 9.59e-13 72.8
Msa0579510 AT1G63440.1 35.075 134 58 3 648 781 787 891 2.20e-12 71.6
Msa0579510 AT5G21930.4 26.991 226 152 5 247 467 346 563 5.87e-12 70.1
Msa0579510 AT3G13900.1 26.104 249 131 6 490 697 539 775 8.42e-12 69.7
Msa0579510 AT5G21930.2 26.991 226 152 5 247 467 346 563 9.92e-12 69.3
Msa0579510 AT5G21930.1 26.991 226 152 5 247 467 346 563 9.92e-12 69.3
Msa0579510 AT1G26130.2 23.577 369 184 10 441 721 419 777 1.00e-11 69.3
Msa0579510 AT1G26130.4 23.577 369 184 10 441 721 419 777 1.00e-11 69.3
Msa0579510 AT1G26130.3 23.577 369 184 10 441 721 419 777 1.00e-11 69.3
Msa0579510 AT3G13900.3 25.101 247 136 5 490 697 539 775 1.02e-11 69.3
Msa0579510 AT1G72700.1 25.532 235 124 5 504 697 544 768 1.07e-11 69.3
Msa0579510 AT1G72700.3 25.532 235 124 5 504 697 544 768 1.07e-11 69.3
Msa0579510 AT1G72700.2 25.532 235 124 5 504 697 544 768 1.07e-11 69.3
Msa0579510 AT3G13900.2 25.101 247 136 5 490 697 539 775 1.14e-11 68.9
Msa0579510 AT5G44790.1 33.987 153 72 5 629 781 779 902 2.05e-11 68.2
Msa0579510 AT1G13210.1 23.161 367 186 10 441 721 418 774 2.22e-11 68.2
Msa0579510 AT3G25610.1 21.935 465 261 13 390 765 368 819 4.47e-11 67.4

Find 204 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGAGTTGCTACAATAAT+TGG 0.171523 4_1:+84240436 Msa0579510:CDS
GGTGAGGTTGTTGCTGTTAC+TGG 0.179759 4_1:+84241722 Msa0579510:CDS
GAATCAGCGTTATTAGAATT+TGG 0.207543 4_1:+84240970 Msa0579510:CDS
ACAAATTAAGCAGGGAATTA+AGG 0.211254 4_1:+84236539 Msa0579510:CDS
ATTAGAATTTGGCTTGCTTT+TGG 0.228885 4_1:+84240981 Msa0579510:CDS
ATATGGTGGTTAACAAAATA+TGG 0.255441 4_1:+84240779 Msa0579510:CDS
ACCAAACATATTTCTCAAAT+TGG 0.261106 4_1:-84241702 None:intergenic
TCTTTCTGCTTGTGAGACTA+TGG 0.268004 4_1:+84240705 Msa0579510:CDS
ATCCCTACAGTTCATGGATT+TGG 0.269593 4_1:+84240057 Msa0579510:CDS
AAACGGAAAGAACACAATAT+TGG 0.283653 4_1:+84240936 Msa0579510:CDS
TTTAAAGACTTTGTGTGTAT+TGG 0.283695 4_1:+84236144 Msa0579510:five_prime_UTR
AGGAACCGCAACAACTATTA+TGG 0.283792 4_1:-84240602 None:intergenic
CTGTAGTTTCCATAGGTATT+GGG 0.284034 4_1:+84239933 Msa0579510:CDS
GCTGATGGAATTTATATATC+TGG 0.287480 4_1:+84240199 Msa0579510:CDS
GATTGCAGACAACAAATCTT+TGG 0.310859 4_1:+84239815 Msa0579510:CDS
CTTGACTCTAACCATTCTTA+TGG 0.311129 4_1:+84239904 Msa0579510:CDS
GCTGTAGTTTCCATAGGTAT+TGG 0.313206 4_1:+84239932 Msa0579510:CDS
GAGATTGTAACCTGGATTCT+TGG 0.315197 4_1:-84241561 None:intergenic
AGATCTTTGTTCAGGTCAAC+AGG 0.324420 4_1:+84240095 Msa0579510:CDS
TTAAAGACTTTGTGTGTATT+GGG 0.328388 4_1:+84236145 Msa0579510:five_prime_UTR
AAAGCACTTCATGGTGAGTT+TGG 0.333047 4_1:+84240523 Msa0579510:CDS
GCTTCGACAGAGCGATTCTT+TGG 0.345796 4_1:-84236423 None:intergenic
AACTAAAGTGCAGGATGGTC+AGG 0.351533 4_1:+84240309 Msa0579510:CDS
TATACTCTAATAGCTTTAGT+TGG 0.355705 4_1:+84241333 Msa0579510:CDS
TGCTTCTATTGTTCGTAGTC+AGG 0.361473 4_1:+84239700 Msa0579510:CDS
GCTACAATAATTGGTAAAAT+CGG 0.363279 4_1:+84240445 Msa0579510:CDS
ATTGCAGACAACAAATCTTT+GGG 0.365539 4_1:+84239816 Msa0579510:CDS
GAACATTCCTGATGTTTGTA+TGG 0.367131 4_1:+84239867 Msa0579510:CDS
TTCATGGTGAGTTTGGTAAT+TGG 0.376896 4_1:+84240530 Msa0579510:CDS
GTTTGTATGGGATGCATTGC+AGG 0.378043 4_1:+84239880 Msa0579510:CDS
ACGAAAACTTGGTCCCTCTA+TGG 0.378654 4_1:-84241505 None:intergenic
TATAAGAACTTGAGTAATAA+TGG 0.381534 4_1:+84239725 Msa0579510:CDS
CTGCTTAATTTGTTCAGCTT+CGG 0.381542 4_1:-84236529 None:intergenic
ACGATATTTGCGCGGTCTGC+AGG 0.382326 4_1:-84241204 None:intergenic
ACAATAGAAGCAATCTCATT+TGG 0.383431 4_1:-84239689 None:intergenic
AAAGCCTGGAGCCTTCCATT+AGG 0.387957 4_1:-84241105 None:intergenic
AATCATACTCAGTATATTCT+TGG 0.390495 4_1:+84240000 Msa0579510:CDS
GATATTGTTCATTTGTCTAC+TGG 0.390660 4_1:+84240163 Msa0579510:CDS
GTACTTGTCGGCCTCCCTAA+TGG 0.391381 4_1:+84241090 Msa0579510:CDS
AACGGAAAGAACACAATATT+GGG 0.397399 4_1:+84240937 Msa0579510:CDS
TACTTCTGCTGAAGTAGTTA+AGG 0.397447 4_1:+84240909 Msa0579510:CDS
CAGGCAATCCCTACAGTTCA+TGG 0.398032 4_1:+84240051 Msa0579510:CDS
GCAGCATTGCAATTTATTGA+TGG 0.400623 4_1:+84239502 Msa0579510:CDS
ATGTCTGCCTCATGCAATGC+GGG 0.404847 4_1:-84241764 None:intergenic
ATTAGAGTATAACCACTATC+AGG 0.412360 4_1:-84241321 None:intergenic
GGACTTGCCATGGGCATAGC+TGG 0.420413 4_1:+84241788 Msa0579510:CDS
CCATTGCAGGTTAAATTGAA+TGG 0.427258 4_1:+84240418 Msa0579510:CDS
ATCGATGAATCGAGTTTGTC+AGG 0.429638 4_1:+84240235 Msa0579510:CDS
AGCTTTAAGAACTCTGTGTT+TGG 0.430483 4_1:+84241257 Msa0579510:CDS
AAGCCTGGAGCCTTCCATTA+GGG 0.434154 4_1:-84241104 None:intergenic
GATTCGTCTTCCTATCGAAT+GGG 0.436165 4_1:-84236360 None:intergenic
AAATGATGCAACGAAGCTAC+TGG 0.437064 4_1:+84240558 Msa0579510:CDS
GATATATAAATTCCATCAGC+TGG 0.438036 4_1:-84240196 None:intergenic
CTAATAACGCTGATTCTGTT+GGG 0.440022 4_1:-84240963 None:intergenic
CAAAGATATAAATGAACCTC+AGG 0.442304 4_1:+84241284 Msa0579510:CDS
CTCTTTACCTTTCAGTTGTG+TGG 0.443185 4_1:-84240815 None:intergenic
TCTAATAACGCTGATTCTGT+TGG 0.443261 4_1:-84240964 None:intergenic
TCCTGTACGCCCTGGGGTAA+AGG 0.444601 4_1:+84241365 Msa0579510:CDS
AAACACCCTTTCCTTCTCTC+TGG 0.449080 4_1:+84240286 Msa0579510:CDS
TCCTTTACCCCAGGGCGTAC+AGG 0.451348 4_1:-84241366 None:intergenic
GTTTGTGCTGTAGTTTCCAT+AGG 0.457275 4_1:+84239926 Msa0579510:CDS
ACCAATTTGAGAAATATGTT+TGG 0.459360 4_1:+84241701 Msa0579510:CDS
AATAGCTTTAGTTGGAATCA+AGG 0.459902 4_1:+84241341 Msa0579510:CDS
ATCGCTCTGTCGAAGCTCTC+AGG 0.461131 4_1:+84236430 Msa0579510:CDS
AGTATGTTTGTGCCCGCTCA+AGG 0.464048 4_1:-84236218 None:intergenic
CTTTCTGCTTGTGAGACTAT+GGG 0.464616 4_1:+84240706 Msa0579510:CDS
AGAGGATGAGACTCCATTGC+AGG 0.464980 4_1:+84240405 Msa0579510:CDS
ACACCATCATATGTTCCCTT+TGG 0.465764 4_1:-84239974 None:intergenic
TATACCACATTCTTTAGCTA+TGG 0.470261 4_1:-84241463 None:intergenic
GACATTAACAACTAACCATA+TGG 0.473790 4_1:+84240762 Msa0579510:CDS
GACTGAATGGGGAAAATTGA+TGG 0.473870 4_1:+84240363 Msa0579510:CDS
GTTCAAACTTGTATTGCAGC+TGG 0.475660 4_1:+84241393 Msa0579510:CDS
ATGCACCTTTGCAGAAAGCC+TGG 0.482594 4_1:-84241119 None:intergenic
TTCTTCCGGACGGAATTAAA+CGG 0.482611 4_1:-84241060 None:intergenic
CTGTCGAAGCTCTCAGGAGG+TGG 0.486962 4_1:+84236436 Msa0579510:CDS
ATCAAGGATCCTGTACGCCC+TGG 0.487895 4_1:+84241357 Msa0579510:CDS
CCATTCAATTTAACCTGCAA+TGG 0.488549 4_1:-84240418 None:intergenic
CGAAGCTGAACAAATTAAGC+AGG 0.488857 4_1:+84236530 Msa0579510:CDS
TCAATATATGATGTAGTAGT+TGG 0.488873 4_1:+84240139 Msa0579510:CDS
AGTGGCAAGCCCAATACCTA+TGG 0.489958 4_1:-84239942 None:intergenic
CTTTCGTATATTCGTTGAGT+GGG 0.491659 4_1:-84236259 None:intergenic
ACAGCCAGTGGTAACCCTTC+AGG 0.491780 4_1:-84240622 None:intergenic
CCTCCCTAATGGAAGGCTCC+AGG 0.493292 4_1:+84241101 Msa0579510:CDS
TTGTTCAGGTCAACAGGGAT+GGG 0.494108 4_1:+84240101 Msa0579510:CDS
GCTATCACAAGAGGCGATAG+AGG 0.499863 4_1:+84239649 Msa0579510:CDS
TGTCCAAATCCATGAACTGT+AGG 0.501001 4_1:-84240060 None:intergenic
TGAACAGCTTCCTTTACCCC+AGG 0.502090 4_1:-84241375 None:intergenic
TGCATTTGCACAGATAAGAC+AGG 0.502873 4_1:+84240739 Msa0579510:CDS
TCACAAGAGGCGATAGAGGC+TGG 0.506883 4_1:+84239653 Msa0579510:CDS
TTTGTTCAGGTCAACAGGGA+TGG 0.507268 4_1:+84240100 Msa0579510:CDS
GGTATTGGGCTTGCCACTGA+AGG 0.508470 4_1:+84239947 Msa0579510:CDS
AAGAAGATGTCTGTACTTGT+CGG 0.509713 4_1:+84241078 Msa0579510:CDS
CAAGTACAGACATCTTCTTC+CGG 0.510599 4_1:-84241074 None:intergenic
TCAAGGATCCTGTACGCCCT+GGG 0.513495 4_1:+84241358 Msa0579510:CDS
GAAGCTAACATTCCTGATAG+TGG 0.513823 4_1:+84241309 Msa0579510:CDS
ATAGTTGTTGCGGTTCCTGA+AGG 0.514585 4_1:+84240607 Msa0579510:CDS
ATGCATCCCATACAAACATC+AGG 0.515566 4_1:-84239874 None:intergenic
TCAGATAATTCACGAAAACT+TGG 0.515712 4_1:-84241516 None:intergenic
AGGCTCCAGGCTTTCTGCAA+AGG 0.515885 4_1:+84241114 Msa0579510:CDS
TGATTCGTCTTCCTATCGAA+TGG 0.518390 4_1:-84236361 None:intergenic
TTCGGAGCGTTTGTCAAGAT+CGG 0.519427 4_1:-84236511 None:intergenic
GCCACTGAAGGGTGGCCAAA+GGG 0.522593 4_1:+84239959 Msa0579510:CDS
GTCCAAATCCATGAACTGTA+GGG 0.525336 4_1:-84240059 None:intergenic
GTCTTTCTAAGCCCTTGAGC+GGG 0.527481 4_1:+84236206 Msa0579510:five_prime_UTR
TGCCACTGAAGGGTGGCCAA+AGG 0.528551 4_1:+84239958 Msa0579510:CDS
GGAGATCAAGTTCCAGCTGA+TGG 0.529763 4_1:+84240184 Msa0579510:CDS
ATAACCGTTCGCATGGTCAC+TGG 0.533941 4_1:+84241417 Msa0579510:CDS
TACAGCACAAACCATAAGAA+TGG 0.535285 4_1:-84239915 None:intergenic
AGGGCTTAGAAAGACGCAAA+GGG 0.535445 4_1:-84236198 None:intergenic
TGGCCAAAGGGAACATATGA+TGG 0.535621 4_1:+84239971 Msa0579510:CDS
TCCCTTTGGCCACCCTTCAG+TGG 0.536825 4_1:-84239960 None:intergenic
TGATGATGGTGTAGCCATAG+AGG 0.538802 4_1:+84241491 Msa0579510:CDS
GTTGTTGCTGTTACTGGCGA+TGG 0.539279 4_1:+84241728 Msa0579510:CDS
TTAGTTCCAGAGAGAAGGAA+AGG 0.540089 4_1:-84240292 None:intergenic
CTGTTGGTATGAGGACTGAA+TGG 0.541909 4_1:+84240350 Msa0579510:CDS
TAGTAACAACTGTTGGTATG+AGG 0.543476 4_1:+84240341 Msa0579510:CDS
GGCAGACATTGGACTTGCCA+TGG 0.543514 4_1:+84241778 Msa0579510:CDS
TGTTGGTATGAGGACTGAAT+GGG 0.544743 4_1:+84240351 Msa0579510:CDS
TTACCGCTGTTAGTGACTAC+AGG 0.545080 4_1:+84240032 Msa0579510:CDS
CCGCCGCAGACGGTTTCGTA+TGG 0.555303 4_1:+84236485 Msa0579510:CDS
GCACTTTAGTTCCAGAGAGA+AGG 0.555400 4_1:-84240297 None:intergenic
CTGTCGGTTTCTATATATGA+AGG 0.556065 4_1:+84239773 Msa0579510:CDS
GGATATCATACCAAGAATCC+AGG 0.556353 4_1:+84241551 Msa0579510:CDS
CAGAGTTCTTAAAGCTTCAG+AGG 0.557031 4_1:-84241250 None:intergenic
TTTGAAATATAGCTTGCGAA+AGG 0.558309 4_1:-84240885 None:intergenic
ACTAAAGTGCAGGATGGTCA+GGG 0.559828 4_1:+84240310 Msa0579510:CDS
GATAAAATTATTGATTGCAA+TGG 0.561159 4_1:+84241165 Msa0579510:CDS
AACTCTAAACGAGGGAGGAG+AGG 0.562433 4_1:+84240387 Msa0579510:CDS
AGGTTTCTCTGTATAACGAT+TGG 0.563422 4_1:-84239840 None:intergenic
GCATTGCATGAGGCAGACAT+TGG 0.565641 4_1:+84241767 Msa0579510:CDS
GTATGTTTGTGCCCGCTCAA+GGG 0.567762 4_1:-84236217 None:intergenic
TGTAACCATAATAGTTGTTG+CGG 0.568605 4_1:+84240597 Msa0579510:CDS
ATTATCTGATGAGCAAATGA+AGG 0.569630 4_1:+84241530 Msa0579510:CDS
GGTTCCTGAAGGGTTACCAC+TGG 0.570414 4_1:+84240618 Msa0579510:CDS
TAGTTCCAGAGAGAAGGAAA+GGG 0.572115 4_1:-84240291 None:intergenic
AAAGGGAACATATGATGGTG+TGG 0.574621 4_1:+84239976 Msa0579510:CDS
TCTCTCTGGAACTAAAGTGC+AGG 0.576668 4_1:+84240300 Msa0579510:CDS
TTGAGCCGTTTAATTCCGTC+CGG 0.576729 4_1:+84241055 Msa0579510:CDS
AGCTGTTGCAAGGAAGCTGT+CGG 0.577235 4_1:+84239757 Msa0579510:CDS
TTGGGCTTGCCACTGAAGGG+TGG 0.577783 4_1:+84239951 Msa0579510:CDS
GCAGACATTGGACTTGCCAT+GGG 0.577852 4_1:+84241779 Msa0579510:CDS
CGTCTTTCTAAGCCCTTGAG+CGG 0.585314 4_1:+84236205 Msa0579510:five_prime_UTR
AATAGCTCTCTATGTTCAGA+AGG 0.585442 4_1:+84239480 Msa0579510:CDS
CTGAAAACAAACATATCTGA+AGG 0.586170 4_1:+84240850 Msa0579510:CDS
AGCTGGAATAACCGTTCGCA+TGG 0.588081 4_1:+84241410 Msa0579510:CDS
TCGTTGAGTGGGGACTAAAA+CGG 0.588915 4_1:-84236248 None:intergenic
AAAATGTTAGTAACAACTGT+TGG 0.590839 4_1:+84240334 Msa0579510:CDS
AATCTCTCTCCCCATTCGAT+AGG 0.591198 4_1:+84236350 Msa0579510:five_prime_UTR
GATGATGGTGTAGCCATAGA+GGG 0.591517 4_1:+84241492 Msa0579510:CDS
TTGTCGGCCTCCCTAATGGA+AGG 0.591794 4_1:+84241094 Msa0579510:CDS
GAACAGCTTCCTTTACCCCA+GGG 0.593340 4_1:-84241374 None:intergenic
GTCTGCCTCATGCAATGCGG+GGG 0.594575 4_1:-84241762 None:intergenic
AACATTCCTGATGTTTGTAT+GGG 0.597632 4_1:+84239868 Msa0579510:CDS
TAGTTGTTGCGGTTCCTGAA+GGG 0.599571 4_1:+84240608 Msa0579510:CDS
GAAAATACCACACAACTGAA+AGG 0.600517 4_1:+84240808 Msa0579510:CDS
GTATTGGGCTTGCCACTGAA+GGG 0.601088 4_1:+84239948 Msa0579510:CDS
CATGGGCATAGCTGGAACTG+AGG 0.605713 4_1:+84241796 Msa0579510:CDS
AAGAACTTGAGTAATAATGG+TGG 0.607367 4_1:+84239728 Msa0579510:CDS
CTCAGTTCCAGCTATGCCCA+TGG 0.609723 4_1:-84241795 None:intergenic
TGTCTGCCTCATGCAATGCG+GGG 0.609938 4_1:-84241763 None:intergenic
TGTGGTATACTTACTGATGA+TGG 0.611651 4_1:+84241477 Msa0579510:CDS
AAGGGAACATATGATGGTGT+GGG 0.615176 4_1:+84239977 Msa0579510:CDS
TGAATACAAGCTATCACAAG+AGG 0.619601 4_1:+84239640 Msa0579510:CDS
ATAGGAAGACGAATCAGCAA+TGG 0.624142 4_1:+84236368 Msa0579510:exon
ACTTTCGTATATTCGTTGAG+TGG 0.625570 4_1:-84236260 None:intergenic
ATCACCAGTGACCATGCGAA+CGG 0.626402 4_1:-84241421 None:intergenic
TACAGACATCTTCTTCCGGA+CGG 0.627058 4_1:-84241070 None:intergenic
AACATCAGGAATGTTCTCGA+AGG 0.627494 4_1:-84239860 None:intergenic
AAGACGAATCAGCAATGGAG+TGG 0.630245 4_1:+84236373 Msa0579510:exon
AATGTCTGCCTCATGCAATG+CGG 0.632627 4_1:-84241765 None:intergenic
GGAATGTTAGCTTCTCCCTG+AGG 0.633132 4_1:-84241300 None:intergenic
AAGGGCTTAGAAAGACGCAA+AGG 0.633956 4_1:-84236199 None:intergenic
AAAGATATAAATGAACCTCA+GGG 0.634481 4_1:+84241285 Msa0579510:CDS
CTTATGTTTGTCGAGCGGCA+AGG 0.635144 4_1:-84241672 None:intergenic
AATGGAGTGGAATCTGCTCA+AGG 0.637853 4_1:+84236386 Msa0579510:exon
AGACTGAGTGTCACAGCCAG+TGG 0.639256 4_1:-84240634 None:intergenic
GATCTTTGTTCAGGTCAACA+GGG 0.639989 4_1:+84240096 Msa0579510:CDS
GTCGATGTTCAAAATTTGCG+CGG 0.642636 4_1:+84236281 Msa0579510:five_prime_UTR
AAAGCCATAGCTAAAGAATG+TGG 0.644216 4_1:+84241459 Msa0579510:CDS
TTTCGTATATTCGTTGAGTG+GGG 0.645675 4_1:-84236258 None:intergenic
TTTGAGAAATATGTTTGGTG+AGG 0.646587 4_1:+84241706 Msa0579510:CDS
ATTAACAACTAACCATATGG+TGG 0.651424 4_1:+84240765 Msa0579510:CDS
GAAGCTGAACAAATTAAGCA+GGG 0.656666 4_1:+84236531 Msa0579510:CDS
CCATACGAAACCGTCTGCGG+CGG 0.658203 4_1:-84236485 None:intergenic
GCTCTGTCGAAGCTCTCAGG+AGG 0.661176 4_1:+84236433 Msa0579510:CDS
GTGGAGTTGAAGCTGTTGCA+AGG 0.662176 4_1:+84239747 Msa0579510:CDS
GCATTTGCACAGATAAGACA+GGG 0.662575 4_1:+84240740 Msa0579510:CDS
GGCTTAGAAAGACGCAAAGG+GGG 0.664278 4_1:-84236196 None:intergenic
ACTAACTTATGTTTGTCGAG+CGG 0.664606 4_1:-84241677 None:intergenic
CAACCATACGAAACCGTCTG+CGG 0.665343 4_1:-84236488 None:intergenic
TTGCAGACAACAAATCTTTG+GGG 0.665708 4_1:+84239817 Msa0579510:CDS
ATTCGTCTTCCTATCGAATG+GGG 0.671253 4_1:-84236359 None:intergenic
TTGATGGAAACTCTAAACGA+GGG 0.673009 4_1:+84240379 Msa0579510:CDS
CCTGGAGCCTTCCATTAGGG+AGG 0.675174 4_1:-84241101 None:intergenic
CAAGGATCCTGTACGCCCTG+GGG 0.680616 4_1:+84241359 Msa0579510:CDS
GGGCTTAGAAAGACGCAAAG+GGG 0.680685 4_1:-84236197 None:intergenic
CTAAAGTGCAGGATGGTCAG+GGG 0.681358 4_1:+84240311 Msa0579510:CDS
ATTGATGGAAACTCTAAACG+AGG 0.684504 4_1:+84240378 Msa0579510:CDS
TCTGGAACTAAAGTGCAGGA+TGG 0.684972 4_1:+84240304 Msa0579510:CDS
ATGGAAACTCTAAACGAGGG+AGG 0.685516 4_1:+84240382 Msa0579510:CDS
GTATCTTATAAGCTTTACTG+CGG 0.688450 4_1:-84241026 None:intergenic
TTGCCTGTAGTCACTAACAG+CGG 0.730012 4_1:-84240035 None:intergenic
CATCTGAGACGATATTTGCG+CGG 0.753777 4_1:-84241212 None:intergenic
GTTGGTATGAGGACTGAATG+GGG 0.754776 4_1:+84240352 Msa0579510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTAAAAAAAAAAT+TGG + chr4_1:84237763-84237782 Msa0579510:intron 0.0%
!! TGCAAAAAAAAAAAAAAAAA+TGG - chr4_1:84237078-84237097 None:intergenic 10.0%
!!! ATATTAAAAGACTATTATTT+TGG + chr4_1:84237339-84237358 Msa0579510:intron 10.0%
!!! CTTTTTATTTAATTCAAAAA+AGG - chr4_1:84238005-84238024 None:intergenic 10.0%
!!! CTTTTTTGAATTAAATAAAA+AGG + chr4_1:84238003-84238022 Msa0579510:intron 10.0%
!!! ATAATTTGTCGTAATATTAT+TGG + chr4_1:84236701-84236720 Msa0579510:intron 15.0%
!!! TAATTTGTCGTAATATTATT+GGG + chr4_1:84236702-84236721 Msa0579510:intron 15.0%
!! TTCTTCAAATTCTTAATTAA+TGG + chr4_1:84237010-84237029 Msa0579510:intron 15.0%
!! TATATCATAAATTATAACAG+CGG - chr4_1:84237548-84237567 None:intergenic 15.0%
!!! TTTAATTTTTTTTTCTTTGG+TGG + chr4_1:84237856-84237875 Msa0579510:intron 15.0%
!!! ATAGTATAACCTTATTTTAT+AGG - chr4_1:84239383-84239402 None:intergenic 15.0%
!! GAAATGAAATGAAAAAGATA+AGG - chr4_1:84236579-84236598 None:intergenic 20.0%
!!! ACATTCACATTTTTTTTGAA+GGG - chr4_1:84237148-84237167 None:intergenic 20.0%
!!! AACATTCACATTTTTTTTGA+AGG - chr4_1:84237149-84237168 None:intergenic 20.0%
!! GTTATATTCATAATCTTTGT+AGG - chr4_1:84237225-84237244 None:intergenic 20.0%
!! TTATGAATATAACAGATTAC+TGG + chr4_1:84237232-84237251 Msa0579510:intron 20.0%
!!! TTTGGTTATATTAGTTTTCA+CGG + chr4_1:84237357-84237376 Msa0579510:intron 20.0%
!! TTGCAATTAACAGAAAATTT+GGG - chr4_1:84237435-84237454 None:intergenic 20.0%
!! ATTGCAATTAACAGAAAATT+TGG - chr4_1:84237436-84237455 None:intergenic 20.0%
!!! AATAAAAAGGCATATAAGAA+AGG + chr4_1:84238016-84238035 Msa0579510:intron 20.0%
!! CTGATATAACAAATAAACTT+AGG + chr4_1:84238521-84238540 Msa0579510:intron 20.0%
!!! ACAAATATAAGTTGATTTTG+AGG + chr4_1:84238691-84238710 Msa0579510:intron 20.0%
!! ATTATTGTAGTAATGTAGTA+TGG + chr4_1:84239106-84239125 Msa0579510:intron 20.0%
!! TATAAGAACTTGAGTAATAA+TGG + chr4_1:84239725-84239744 Msa0579510:CDS 20.0%
!! GAAAAAATTAATGAATGACA+TGG + chr4_1:84240669-84240688 Msa0579510:CDS 20.0%
!!! GATAAAATTATTGATTGCAA+TGG + chr4_1:84241165-84241184 Msa0579510:CDS 20.0%
!! TTAAATTTGATATCAGGTAA+TGG + chr4_1:84241643-84241662 Msa0579510:intron 20.0%
! TTTAAAGACTTTGTGTGTAT+TGG + chr4_1:84236144-84236163 Msa0579510:five_prime_UTR 25.0%
! TTAAAGACTTTGTGTGTATT+GGG + chr4_1:84236145-84236164 Msa0579510:five_prime_UTR 25.0%
! GTACAAAATTAGCTAGAAAA+AGG + chr4_1:84236673-84236692 Msa0579510:intron 25.0%
! TACTGTAATTAATACCAACA+TGG + chr4_1:84236765-84236784 Msa0579510:intron 25.0%
! AAAGGGAAAACAAATCAAAA+GGG + chr4_1:84236801-84236820 Msa0579510:intron 25.0%
! ATTATGATGCTTATTCATCA+AGG - chr4_1:84237283-84237302 None:intergenic 25.0%
! TGCAATTAACAGAAAATTTG+GGG - chr4_1:84237434-84237453 None:intergenic 25.0%
! TTGGTTGAAAAGTAATTACT+TGG + chr4_1:84237886-84237905 Msa0579510:intron 25.0%
! TAAATAAATAACCTGAACGA+AGG - chr4_1:84237919-84237938 None:intergenic 25.0%
! ACAACACTTGTCAAAAAAAT+AGG - chr4_1:84237951-84237970 None:intergenic 25.0%
! GACCATTAATTCTTTAAACA+CGG + chr4_1:84238166-84238185 Msa0579510:intron 25.0%
! ATGTAAAGTGATTTCAACAA+CGG + chr4_1:84238241-84238260 Msa0579510:intron 25.0%
! ACTTAAAATGCATACAAAGA+AGG + chr4_1:84238434-84238453 Msa0579510:intron 25.0%
!! TGTCAATCATATTTGAGTTT+CGG + chr4_1:84238816-84238835 Msa0579510:intron 25.0%
!! TTCGGGAAATTTTCAAATAT+CGG + chr4_1:84238834-84238853 Msa0579510:intron 25.0%
!! ACTGAAGTCTATTTTATAAC+AGG + chr4_1:84238912-84238931 Msa0579510:intron 25.0%
!!! TCAATATGCCATTTTTTTCT+GGG - chr4_1:84238967-84238986 None:intergenic 25.0%
! TGTGACTTACCTATAAAATA+AGG + chr4_1:84239371-84239390 Msa0579510:intron 25.0%
! TAAAGTTAATATAGCCAAAG+TGG - chr4_1:84239436-84239455 None:intergenic 25.0%
!! TTAACTTTATTTACTCCATC+AGG + chr4_1:84239447-84239466 Msa0579510:intron 25.0%
!! ATTGCAATTTATTGATGGTA+TGG + chr4_1:84239507-84239526 Msa0579510:intron 25.0%
! AATCATACTCAGTATATTCT+TGG + chr4_1:84240000-84240019 Msa0579510:CDS 25.0%
! GAAAAAAAAGATCTTTGTTC+AGG + chr4_1:84240087-84240106 Msa0579510:CDS 25.0%
! TCAATATATGATGTAGTAGT+TGG + chr4_1:84240139-84240158 Msa0579510:CDS 25.0%
!!! TGTTTTTCGGTTATAAATAC+AGG - chr4_1:84240271-84240290 None:intergenic 25.0%
! AAAATGTTAGTAACAACTGT+TGG + chr4_1:84240334-84240353 Msa0579510:CDS 25.0%
! GCTACAATAATTGGTAAAAT+CGG + chr4_1:84240445-84240464 Msa0579510:CDS 25.0%
!! ATATTTTGTTAACCACCATA+TGG - chr4_1:84240780-84240799 None:intergenic 25.0%
! ATATGGTGGTTAACAAAATA+TGG + chr4_1:84240779-84240798 Msa0579510:CDS 25.0%
! GAAGTAGTTAAGGATAAAAA+CGG + chr4_1:84240919-84240938 Msa0579510:CDS 25.0%
! AAAGATATAAATGAACCTCA+GGG + chr4_1:84241285-84241304 Msa0579510:CDS 25.0%
!!! TATACTCTAATAGCTTTAGT+TGG + chr4_1:84241333-84241352 Msa0579510:CDS 25.0%
! TTGTGCTTAAATTTGATATC+AGG + chr4_1:84241637-84241656 Msa0579510:intron 25.0%
! ACCAATTTGAGAAATATGTT+TGG + chr4_1:84241701-84241720 Msa0579510:CDS 25.0%
! ACCAAACATATTTCTCAAAT+TGG - chr4_1:84241705-84241724 None:intergenic 25.0%
ACAAATTAAGCAGGGAATTA+AGG + chr4_1:84236539-84236558 Msa0579510:CDS 30.0%
! TTTTAAACGCTACAGGAATT+AGG + chr4_1:84236612-84236631 Msa0579510:intron 30.0%
ATGGAAGAGACAAATAGAAA+GGG + chr4_1:84236784-84236803 Msa0579510:intron 30.0%
GAAAGGGAAAACAAATCAAA+AGG + chr4_1:84236800-84236819 Msa0579510:intron 30.0%
AAGGGAAAACAAATCAAAAG+GGG + chr4_1:84236802-84236821 Msa0579510:intron 30.0%
GCAATTAACAGAAAATTTGG+GGG - chr4_1:84237433-84237452 None:intergenic 30.0%
ATCATAAATTATAACAGCGG+AGG - chr4_1:84237545-84237564 None:intergenic 30.0%
TTTGTGTTCAACCTAGTAAT+AGG + chr4_1:84237604-84237623 Msa0579510:intron 30.0%
! AATGTTCGCATATTTTGCTA+GGG - chr4_1:84237659-84237678 None:intergenic 30.0%
GACAGATATCTCAATTTCAA+AGG - chr4_1:84237792-84237811 None:intergenic 30.0%
!!! TTTCTTTGGTGGATTTTCTT+TGG + chr4_1:84237867-84237886 Msa0579510:intron 30.0%
! AAAAAGGCATATAAGAAAGG+TGG + chr4_1:84238019-84238038 Msa0579510:intron 30.0%
CCATGTTAACTTTCTTGATA+CGG + chr4_1:84238055-84238074 Msa0579510:intron 30.0%
!!! AACAACCATTGACTTCTTTT+TGG + chr4_1:84238134-84238153 Msa0579510:intron 30.0%
AGCCGTGTTTAAAGAATTAA+TGG - chr4_1:84238171-84238190 None:intergenic 30.0%
GCACATTTAATATTTCCTTG+TGG + chr4_1:84238279-84238298 Msa0579510:intron 30.0%
!! AATTTTCGGGAGAAAAATGT+GGG - chr4_1:84238325-84238344 None:intergenic 30.0%
CTTTCAAAAATATCAGCACT+TGG - chr4_1:84238500-84238519 None:intergenic 30.0%
TGTCTGTTGAACAAAAACAA+TGG - chr4_1:84238733-84238752 None:intergenic 30.0%
! GTCAATCATATTTGAGTTTC+GGG + chr4_1:84238817-84238836 Msa0579510:intron 30.0%
! AATTTTCAAATATCGGTCCA+TGG + chr4_1:84238841-84238860 Msa0579510:intron 30.0%
TAGTAGACTACTTTGATATG+TGG - chr4_1:84238871-84238890 None:intergenic 30.0%
TAGACTTCAGTAGAAGTTTA+TGG - chr4_1:84238903-84238922 None:intergenic 30.0%
!!! GTCAATATGCCATTTTTTTC+TGG - chr4_1:84238968-84238987 None:intergenic 30.0%
! TGCACTTTGAATTGATTCAA+AGG + chr4_1:84239020-84239039 Msa0579510:intron 30.0%
TGCTTAGAAACTTACTTTAG+AGG + chr4_1:84239076-84239095 Msa0579510:intron 30.0%
ACACATGCATATCAAATCAT+AGG - chr4_1:84239216-84239235 None:intergenic 30.0%
!!! TCAATTTTGGCATCGATTTT+AGG + chr4_1:84239311-84239330 Msa0579510:intron 30.0%
AAATTTACCGTGACAGTATA+AGG + chr4_1:84239338-84239357 Msa0579510:intron 30.0%
AATTTACCGTGACAGTATAA+GGG + chr4_1:84239339-84239358 Msa0579510:intron 30.0%
!! ACTGTTTTTCTTAGTTCATC+TGG + chr4_1:84239591-84239610 Msa0579510:intron 30.0%
ACAATAGAAGCAATCTCATT+TGG - chr4_1:84239692-84239711 None:intergenic 30.0%
AAGAACTTGAGTAATAATGG+TGG + chr4_1:84239728-84239747 Msa0579510:CDS 30.0%
ATTGCAGACAACAAATCTTT+GGG + chr4_1:84239816-84239835 Msa0579510:CDS 30.0%
AACATTCCTGATGTTTGTAT+GGG + chr4_1:84239868-84239887 Msa0579510:CDS 30.0%
GATATTGTTCATTTGTCTAC+TGG + chr4_1:84240163-84240182 Msa0579510:CDS 30.0%
GATATATAAATTCCATCAGC+TGG - chr4_1:84240199-84240218 None:intergenic 30.0%
GCTGATGGAATTTATATATC+TGG + chr4_1:84240199-84240218 Msa0579510:CDS 30.0%
AATGGAGTTGCTACAATAAT+TGG + chr4_1:84240436-84240455 Msa0579510:CDS 30.0%
! TTTTGCCATTGTGACATTTT+TGG + chr4_1:84240474-84240493 Msa0579510:CDS 30.0%
CAATACCAAAAATGTCACAA+TGG - chr4_1:84240482-84240501 None:intergenic 30.0%
TGTAACCATAATAGTTGTTG+CGG + chr4_1:84240597-84240616 Msa0579510:CDS 30.0%
GACATTAACAACTAACCATA+TGG + chr4_1:84240762-84240781 Msa0579510:CDS 30.0%
ATTAACAACTAACCATATGG+TGG + chr4_1:84240765-84240784 Msa0579510:CDS 30.0%
CTGAAAACAAACATATCTGA+AGG + chr4_1:84240850-84240869 Msa0579510:CDS 30.0%
! TTTGAAATATAGCTTGCGAA+AGG - chr4_1:84240888-84240907 None:intergenic 30.0%
AAACGGAAAGAACACAATAT+TGG + chr4_1:84240936-84240955 Msa0579510:CDS 30.0%
AACGGAAAGAACACAATATT+GGG + chr4_1:84240937-84240956 Msa0579510:CDS 30.0%
GAATCAGCGTTATTAGAATT+TGG + chr4_1:84240970-84240989 Msa0579510:CDS 30.0%
!!! ATTAGAATTTGGCTTGCTTT+TGG + chr4_1:84240981-84241000 Msa0579510:CDS 30.0%
!!! TTAGAATTTGGCTTGCTTTT+GGG + chr4_1:84240982-84241001 Msa0579510:CDS 30.0%
GTATCTTATAAGCTTTACTG+CGG - chr4_1:84241029-84241048 None:intergenic 30.0%
CAAAGATATAAATGAACCTC+AGG + chr4_1:84241284-84241303 Msa0579510:CDS 30.0%
ATTAGAGTATAACCACTATC+AGG - chr4_1:84241324-84241343 None:intergenic 30.0%
!! AATAGCTTTAGTTGGAATCA+AGG + chr4_1:84241341-84241360 Msa0579510:CDS 30.0%
TATACCACATTCTTTAGCTA+TGG - chr4_1:84241466-84241485 None:intergenic 30.0%
TCAGATAATTCACGAAAACT+TGG - chr4_1:84241519-84241538 None:intergenic 30.0%
ATTATCTGATGAGCAAATGA+AGG + chr4_1:84241530-84241549 Msa0579510:CDS 30.0%
! TTTGAGAAATATGTTTGGTG+AGG + chr4_1:84241706-84241725 Msa0579510:CDS 30.0%
TTTCGTATATTCGTTGAGTG+GGG - chr4_1:84236261-84236280 None:intergenic 35.0%
CTTTCGTATATTCGTTGAGT+GGG - chr4_1:84236262-84236281 None:intergenic 35.0%
ACTTTCGTATATTCGTTGAG+TGG - chr4_1:84236263-84236282 None:intergenic 35.0%
!! CTGCTTAATTTGTTCAGCTT+CGG - chr4_1:84236532-84236551 None:intergenic 35.0%
GAAGCTGAACAAATTAAGCA+GGG + chr4_1:84236531-84236550 Msa0579510:CDS 35.0%
! TCCATCATTTTAAACGCTAC+AGG + chr4_1:84236605-84236624 Msa0579510:intron 35.0%
! TCCTGTAGCGTTTAAAATGA+TGG - chr4_1:84236609-84236628 None:intergenic 35.0%
TCTATTTGTCTCTTCCATGT+TGG - chr4_1:84236782-84236801 None:intergenic 35.0%
CATGGAAGAGACAAATAGAA+AGG + chr4_1:84236783-84236802 Msa0579510:intron 35.0%
AGGGAAAACAAATCAAAAGG+GGG + chr4_1:84236803-84236822 Msa0579510:intron 35.0%
!!! TATCCGTTAGTTTTCTTCCA+TGG + chr4_1:84236919-84236938 Msa0579510:intron 35.0%
TGTCCATGGAAGAAAACTAA+CGG - chr4_1:84236925-84236944 None:intergenic 35.0%
CATTGTAGCAGTGTAAAATC+AGG - chr4_1:84236968-84236987 None:intergenic 35.0%
GGTATGGATGTAAATTCGAT+TGG - chr4_1:84237176-84237195 None:intergenic 35.0%
TTACATCCATACCCCAAAAT+TGG + chr4_1:84237183-84237202 Msa0579510:intron 35.0%
TACATCCATACCCCAAAATT+GGG + chr4_1:84237184-84237203 Msa0579510:intron 35.0%
ATAATCTTTGTAGGCCATCA+CGG - chr4_1:84237216-84237235 None:intergenic 35.0%
TCAACCTAGTAATAGGAGAA+AGG + chr4_1:84237611-84237630 Msa0579510:intron 35.0%
! ATTTTGCTAGGGAAATTTCG+AGG - chr4_1:84237648-84237667 None:intergenic 35.0%
! CAATGTTCGCATATTTTGCT+AGG - chr4_1:84237660-84237679 None:intergenic 35.0%
TATGCGAACATTGTTTGACA+AGG + chr4_1:84237667-84237686 Msa0579510:intron 35.0%
ATAGACAATGTGACAACTAG+TGG + chr4_1:84237704-84237723 Msa0579510:intron 35.0%
TAGACAATGTGACAACTAGT+GGG + chr4_1:84237705-84237724 Msa0579510:intron 35.0%
GGGATATAAACAAGAGAAAG+TGG + chr4_1:84237725-84237744 Msa0579510:intron 35.0%
CCGTATCAAGAAAGTTAACA+TGG - chr4_1:84238058-84238077 None:intergenic 35.0%
GTTAACTTTCTTGATACGGA+AGG + chr4_1:84238059-84238078 Msa0579510:intron 35.0%
TCGTAAGAGACTGCAATAAT+AGG - chr4_1:84238095-84238114 None:intergenic 35.0%
CAAGACCAAAAAGAAGTCAA+TGG - chr4_1:84238142-84238161 None:intergenic 35.0%
TAAAGTGATTTCAACAACGG+TGG + chr4_1:84238244-84238263 Msa0579510:intron 35.0%
! TCCTTGTGGATGATTTTACT+TGG + chr4_1:84238293-84238312 Msa0579510:intron 35.0%
ACCAAGTAAAATCATCCACA+AGG - chr4_1:84238297-84238316 None:intergenic 35.0%
!! CAATTTTCGGGAGAAAAATG+TGG - chr4_1:84238326-84238345 None:intergenic 35.0%
! TTTTCTCCCGAAAATTGACT+AGG + chr4_1:84238329-84238348 Msa0579510:intron 35.0%
! AACTTAGGCGAATTTTACAG+TGG + chr4_1:84238536-84238555 Msa0579510:intron 35.0%
TCGAATACTACCTATTAAGG+CGG - chr4_1:84238563-84238582 None:intergenic 35.0%
CCATCGAATACTACCTATTA+AGG - chr4_1:84238566-84238585 None:intergenic 35.0%
CCTTAATAGGTAGTATTCGA+TGG + chr4_1:84238563-84238582 Msa0579510:intron 35.0%
TTCAACTCATCCTTACAACT+GGG + chr4_1:84238627-84238646 Msa0579510:intron 35.0%
!! TCTCCTTGTTTCTGTCAAAT+TGG - chr4_1:84238671-84238690 None:intergenic 35.0%
TTTGTTCAACAGACACAATC+AGG + chr4_1:84238738-84238757 Msa0579510:intron 35.0%
!!! ATATGCCATTTTTTTCTGGG+CGG - chr4_1:84238964-84238983 None:intergenic 35.0%
TATTGACCTTTAGACGTTTG+TGG + chr4_1:84238981-84239000 Msa0579510:intron 35.0%
ATTGACCTTTAGACGTTTGT+GGG + chr4_1:84238982-84239001 Msa0579510:intron 35.0%
TATAACCCACAAACGTCTAA+AGG - chr4_1:84238990-84239009 None:intergenic 35.0%
! ACGCTCTCAAAGTTCAATTT+TGG + chr4_1:84239298-84239317 Msa0579510:intron 35.0%
ATTTACCGTGACAGTATAAG+GGG + chr4_1:84239340-84239359 Msa0579510:intron 35.0%
! CTATTCGAATCTTTTCCTGA+TGG - chr4_1:84239465-84239484 None:intergenic 35.0%
AATAGCTCTCTATGTTCAGA+AGG + chr4_1:84239480-84239499 Msa0579510:CDS 35.0%
GCAGCATTGCAATTTATTGA+TGG + chr4_1:84239502-84239521 Msa0579510:CDS 35.0%
!! AGTGATTAGTTCTAAAGCGA+TGG - chr4_1:84239562-84239581 None:intergenic 35.0%
TGAATACAAGCTATCACAAG+AGG + chr4_1:84239640-84239659 Msa0579510:CDS 35.0%
!! CTGTCGGTTTCTATATATGA+AGG + chr4_1:84239773-84239792 Msa0579510:CDS 35.0%
GATTGCAGACAACAAATCTT+TGG + chr4_1:84239815-84239834 Msa0579510:CDS 35.0%
TTGCAGACAACAAATCTTTG+GGG + chr4_1:84239817-84239836 Msa0579510:CDS 35.0%
AGGTTTCTCTGTATAACGAT+TGG - chr4_1:84239843-84239862 None:intergenic 35.0%
GAACATTCCTGATGTTTGTA+TGG + chr4_1:84239867-84239886 Msa0579510:CDS 35.0%
CTTGACTCTAACCATTCTTA+TGG + chr4_1:84239904-84239923 Msa0579510:CDS 35.0%
TACAGCACAAACCATAAGAA+TGG - chr4_1:84239918-84239937 None:intergenic 35.0%
CTGTAGTTTCCATAGGTATT+GGG + chr4_1:84239933-84239952 Msa0579510:CDS 35.0%
TAGTAACAACTGTTGGTATG+AGG + chr4_1:84240341-84240360 Msa0579510:CDS 35.0%
ATTGATGGAAACTCTAAACG+AGG + chr4_1:84240378-84240397 Msa0579510:CDS 35.0%
TTGATGGAAACTCTAAACGA+GGG + chr4_1:84240379-84240398 Msa0579510:CDS 35.0%
CCATTCAATTTAACCTGCAA+TGG - chr4_1:84240421-84240440 None:intergenic 35.0%
CCATTGCAGGTTAAATTGAA+TGG + chr4_1:84240418-84240437 Msa0579510:CDS 35.0%
!!! CATTTTTGGTATTGACAGTG+AGG + chr4_1:84240488-84240507 Msa0579510:CDS 35.0%
!! CTTGTTGAAAAAGCACTTCA+TGG + chr4_1:84240514-84240533 Msa0579510:CDS 35.0%
! TTCATGGTGAGTTTGGTAAT+TGG + chr4_1:84240530-84240549 Msa0579510:CDS 35.0%
GAAAATACCACACAACTGAA+AGG + chr4_1:84240808-84240827 Msa0579510:CDS 35.0%
TACTTCTGCTGAAGTAGTTA+AGG + chr4_1:84240909-84240928 Msa0579510:CDS 35.0%
!! CTAATAACGCTGATTCTGTT+GGG - chr4_1:84240966-84240985 None:intergenic 35.0%
!! TCTAATAACGCTGATTCTGT+TGG - chr4_1:84240967-84240986 None:intergenic 35.0%
AAGAAGATGTCTGTACTTGT+CGG + chr4_1:84241078-84241097 Msa0579510:CDS 35.0%
!! AGCTTTAAGAACTCTGTGTT+TGG + chr4_1:84241257-84241276 Msa0579510:CDS 35.0%
AAAGCCATAGCTAAAGAATG+TGG + chr4_1:84241459-84241478 Msa0579510:CDS 35.0%
TGTGGTATACTTACTGATGA+TGG + chr4_1:84241477-84241496 Msa0579510:CDS 35.0%
GATACAATGAGATTGTAACC+TGG - chr4_1:84241572-84241591 None:intergenic 35.0%
ACTAACTTATGTTTGTCGAG+CGG - chr4_1:84241680-84241699 None:intergenic 35.0%
GTCGATGTTCAAAATTTGCG+CGG + chr4_1:84236281-84236300 Msa0579510:five_prime_UTR 40.0%
ATTCGTCTTCCTATCGAATG+GGG - chr4_1:84236362-84236381 None:intergenic 40.0%
GATTCGTCTTCCTATCGAAT+GGG - chr4_1:84236363-84236382 None:intergenic 40.0%
TGATTCGTCTTCCTATCGAA+TGG - chr4_1:84236364-84236383 None:intergenic 40.0%
ATAGGAAGACGAATCAGCAA+TGG + chr4_1:84236368-84236387 Msa0579510:exon 40.0%
CGAAGCTGAACAAATTAAGC+AGG + chr4_1:84236530-84236549 Msa0579510:CDS 40.0%
! GTTTTCTTCCATGGACAAGT+TGG + chr4_1:84236928-84236947 Msa0579510:intron 40.0%
GTGAATTTCCAACTTGTCCA+TGG - chr4_1:84236939-84236958 None:intergenic 40.0%
ACATCCATACCCCAAAATTG+GGG + chr4_1:84237185-84237204 Msa0579510:intron 40.0%
TTGCCGTCATCAGAAACAAA+AGG + chr4_1:84237508-84237527 Msa0579510:intron 40.0%
!!! GCTCCTTTTGTTTCTGATGA+CGG - chr4_1:84237514-84237533 None:intergenic 40.0%
CATGCCTTTCTCCTATTACT+AGG - chr4_1:84237618-84237637 None:intergenic 40.0%
CTAGTAATAGGAGAAAGGCA+TGG + chr4_1:84237616-84237635 Msa0579510:intron 40.0%
TTGGAACATTTCCTTCGTTC+AGG + chr4_1:84237905-84237924 Msa0579510:intron 40.0%
! CAGGTTCCTAGTCAATTTTC+GGG - chr4_1:84238338-84238357 None:intergenic 40.0%
! CCAGGTTCCTAGTCAATTTT+CGG - chr4_1:84238339-84238358 None:intergenic 40.0%
! ACTAGTGTTACTGTTGAACC+AGG - chr4_1:84238357-84238376 None:intergenic 40.0%
CAAGTCCATCACACTATTTG+CGG - chr4_1:84238460-84238479 None:intergenic 40.0%
!! TGTGATGGACTTGCTAACAT+AGG + chr4_1:84238467-84238486 Msa0579510:intron 40.0%
GTTCAACTCATCCTTACAAC+TGG + chr4_1:84238626-84238645 Msa0579510:intron 40.0%
!! CTGTCAAATTGGCACTGATT+AGG - chr4_1:84238660-84238679 None:intergenic 40.0%
GTGCCAATTTGACAGAAACA+AGG + chr4_1:84238665-84238684 Msa0579510:intron 40.0%
TTTCAAATATCGGTCCATGG+TGG + chr4_1:84238844-84238863 Msa0579510:intron 40.0%
CTAAGCAAACTGAGCAAGTA+AGG - chr4_1:84239063-84239082 None:intergenic 40.0%
CATTACCCCTTATACTGTCA+CGG - chr4_1:84239348-84239367 None:intergenic 40.0%
TCAATTCCTGAGTACCACTT+TGG + chr4_1:84239419-84239438 Msa0579510:intron 40.0%
ATATAGCCAAAGTGGTACTC+AGG - chr4_1:84239428-84239447 None:intergenic 40.0%
!!! ATCTGGTTTTCATATGCAGC+TGG + chr4_1:84239608-84239627 Msa0579510:intron 40.0%
TGCTTCTATTGTTCGTAGTC+AGG + chr4_1:84239700-84239719 Msa0579510:CDS 40.0%
AACATCAGGAATGTTCTCGA+AGG - chr4_1:84239863-84239882 None:intergenic 40.0%
ATGCATCCCATACAAACATC+AGG - chr4_1:84239877-84239896 None:intergenic 40.0%
GTTTGTGCTGTAGTTTCCAT+AGG + chr4_1:84239926-84239945 Msa0579510:CDS 40.0%
GCTGTAGTTTCCATAGGTAT+TGG + chr4_1:84239932-84239951 Msa0579510:CDS 40.0%
ACACCATCATATGTTCCCTT+TGG - chr4_1:84239977-84239996 None:intergenic 40.0%
! AAAGGGAACATATGATGGTG+TGG + chr4_1:84239976-84239995 Msa0579510:CDS 40.0%
! AAGGGAACATATGATGGTGT+GGG + chr4_1:84239977-84239996 Msa0579510:CDS 40.0%
ATCCCTACAGTTCATGGATT+TGG + chr4_1:84240057-84240076 Msa0579510:CDS 40.0%
GTCCAAATCCATGAACTGTA+GGG - chr4_1:84240062-84240081 None:intergenic 40.0%
TGTCCAAATCCATGAACTGT+AGG - chr4_1:84240063-84240082 None:intergenic 40.0%
AGATCTTTGTTCAGGTCAAC+AGG + chr4_1:84240095-84240114 Msa0579510:CDS 40.0%
GATCTTTGTTCAGGTCAACA+GGG + chr4_1:84240096-84240115 Msa0579510:CDS 40.0%
ATCGATGAATCGAGTTTGTC+AGG + chr4_1:84240235-84240254 Msa0579510:CDS 40.0%
!!! GAGAAGGAAAGGGTGTTTTT+CGG - chr4_1:84240284-84240303 None:intergenic 40.0%
TAGTTCCAGAGAGAAGGAAA+GGG - chr4_1:84240294-84240313 None:intergenic 40.0%
TTAGTTCCAGAGAGAAGGAA+AGG - chr4_1:84240295-84240314 None:intergenic 40.0%
TGTTGGTATGAGGACTGAAT+GGG + chr4_1:84240351-84240370 Msa0579510:CDS 40.0%
GACTGAATGGGGAAAATTGA+TGG + chr4_1:84240363-84240382 Msa0579510:CDS 40.0%
! AAAGCACTTCATGGTGAGTT+TGG + chr4_1:84240523-84240542 Msa0579510:CDS 40.0%
AAATGATGCAACGAAGCTAC+TGG + chr4_1:84240558-84240577 Msa0579510:CDS 40.0%
AGGAACCGCAACAACTATTA+TGG - chr4_1:84240605-84240624 None:intergenic 40.0%
TCTTTCTGCTTGTGAGACTA+TGG + chr4_1:84240705-84240724 Msa0579510:CDS 40.0%
CTTTCTGCTTGTGAGACTAT+GGG + chr4_1:84240706-84240725 Msa0579510:CDS 40.0%
TGCATTTGCACAGATAAGAC+AGG + chr4_1:84240739-84240758 Msa0579510:CDS 40.0%
GCATTTGCACAGATAAGACA+GGG + chr4_1:84240740-84240759 Msa0579510:CDS 40.0%
CTCTTTACCTTTCAGTTGTG+TGG - chr4_1:84240818-84240837 None:intergenic 40.0%
TTCTTCCGGACGGAATTAAA+CGG - chr4_1:84241063-84241082 None:intergenic 40.0%
CAAGTACAGACATCTTCTTC+CGG - chr4_1:84241077-84241096 None:intergenic 40.0%
CAGAGTTCTTAAAGCTTCAG+AGG - chr4_1:84241253-84241272 None:intergenic 40.0%
GAAGCTAACATTCCTGATAG+TGG + chr4_1:84241309-84241328 Msa0579510:CDS 40.0%
GTTCAAACTTGTATTGCAGC+TGG + chr4_1:84241393-84241412 Msa0579510:CDS 40.0%
GGATATCATACCAAGAATCC+AGG + chr4_1:84241551-84241570 Msa0579510:CDS 40.0%
GAGATTGTAACCTGGATTCT+TGG - chr4_1:84241564-84241583 None:intergenic 40.0%
AAGGGGGAAATATTTGGCAG+TGG - chr4_1:84236183-84236202 None:intergenic 45.0%
GACGCAAAGGGGGAAATATT+TGG - chr4_1:84236189-84236208 None:intergenic 45.0%
AGGGCTTAGAAAGACGCAAA+GGG - chr4_1:84236201-84236220 None:intergenic 45.0%
AAGGGCTTAGAAAGACGCAA+AGG - chr4_1:84236202-84236221 None:intergenic 45.0%
TCGTTGAGTGGGGACTAAAA+CGG - chr4_1:84236251-84236270 None:intergenic 45.0%
AATCTCTCTCCCCATTCGAT+AGG + chr4_1:84236350-84236369 Msa0579510:five_prime_UTR 45.0%
AAGACGAATCAGCAATGGAG+TGG + chr4_1:84236373-84236392 Msa0579510:exon 45.0%
AATGGAGTGGAATCTGCTCA+AGG + chr4_1:84236386-84236405 Msa0579510:exon 45.0%
! TTCGGAGCGTTTGTCAAGAT+CGG - chr4_1:84236514-84236533 None:intergenic 45.0%
CATCCATACCCCAAAATTGG+GGG + chr4_1:84237186-84237205 Msa0579510:intron 45.0%
ATCCATACCCCAAAATTGGG+GGG + chr4_1:84237187-84237206 Msa0579510:intron 45.0%
!! TTACTGGTCTTTGAGCCATG+AGG + chr4_1:84237248-84237267 Msa0579510:intron 45.0%
TCAAGGTCAAGAAGACCTCA+TGG - chr4_1:84237266-84237285 None:intergenic 45.0%
CAACAACGGTGGATGTTAGT+TGG + chr4_1:84238255-84238274 Msa0579510:intron 45.0%
CCGAAAATTGACTAGGAACC+TGG + chr4_1:84238336-84238355 Msa0579510:intron 45.0%
TTACAGTGGACCGCCTTAAT+AGG + chr4_1:84238550-84238569 Msa0579510:intron 45.0%
ACTCATCCTTACAACTGGGA+AGG + chr4_1:84238631-84238650 Msa0579510:intron 45.0%
CAAGTTCCTCTTTGTCCTCA+TGG - chr4_1:84238774-84238793 None:intergenic 45.0%
CTTTGATATGTGGTCCACCA+TGG - chr4_1:84238861-84238880 None:intergenic 45.0%
CATGTCCGCCCAGAAAAAAA+TGG + chr4_1:84238956-84238975 Msa0579510:intron 45.0%
TTGATTCAAAGGTCGTGTCG+TGG + chr4_1:84239031-84239050 Msa0579510:intron 45.0%
GTTTGTATGGGATGCATTGC+AGG + chr4_1:84239880-84239899 Msa0579510:CDS 45.0%
TGGCCAAAGGGAACATATGA+TGG + chr4_1:84239971-84239990 Msa0579510:CDS 45.0%
TTACCGCTGTTAGTGACTAC+AGG + chr4_1:84240032-84240051 Msa0579510:CDS 45.0%
TTGCCTGTAGTCACTAACAG+CGG - chr4_1:84240038-84240057 None:intergenic 45.0%
TTTGTTCAGGTCAACAGGGA+TGG + chr4_1:84240100-84240119 Msa0579510:CDS 45.0%
TTGTTCAGGTCAACAGGGAT+GGG + chr4_1:84240101-84240120 Msa0579510:CDS 45.0%
AAACACCCTTTCCTTCTCTC+TGG + chr4_1:84240286-84240305 Msa0579510:CDS 45.0%
! GCACTTTAGTTCCAGAGAGA+AGG - chr4_1:84240300-84240319 None:intergenic 45.0%
!! TCTCTCTGGAACTAAAGTGC+AGG + chr4_1:84240300-84240319 Msa0579510:CDS 45.0%
! TCTGGAACTAAAGTGCAGGA+TGG + chr4_1:84240304-84240323 Msa0579510:CDS 45.0%
AACTAAAGTGCAGGATGGTC+AGG + chr4_1:84240309-84240328 Msa0579510:CDS 45.0%
ACTAAAGTGCAGGATGGTCA+GGG + chr4_1:84240310-84240329 Msa0579510:CDS 45.0%
CTGTTGGTATGAGGACTGAA+TGG + chr4_1:84240350-84240369 Msa0579510:CDS 45.0%
GTTGGTATGAGGACTGAATG+GGG + chr4_1:84240352-84240371 Msa0579510:CDS 45.0%
ATGGAAACTCTAAACGAGGG+AGG + chr4_1:84240382-84240401 Msa0579510:CDS 45.0%
ATAGTTGTTGCGGTTCCTGA+AGG + chr4_1:84240607-84240626 Msa0579510:CDS 45.0%
TAGTTGTTGCGGTTCCTGAA+GGG + chr4_1:84240608-84240627 Msa0579510:CDS 45.0%
TTGAGCCGTTTAATTCCGTC+CGG + chr4_1:84241055-84241074 Msa0579510:CDS 45.0%
TACAGACATCTTCTTCCGGA+CGG - chr4_1:84241073-84241092 None:intergenic 45.0%
! CATCTGAGACGATATTTGCG+CGG - chr4_1:84241215-84241234 None:intergenic 45.0%
!! TGATGATGGTGTAGCCATAG+AGG + chr4_1:84241491-84241510 Msa0579510:CDS 45.0%
! GATGATGGTGTAGCCATAGA+GGG + chr4_1:84241492-84241511 Msa0579510:CDS 45.0%
ACGAAAACTTGGTCCCTCTA+TGG - chr4_1:84241508-84241527 None:intergenic 45.0%
AATGTCTGCCTCATGCAATG+CGG - chr4_1:84241768-84241787 None:intergenic 45.0%
!!! TATTTTTTTCTTTTTTTTAA+TGG + chr4_1:84237036-84237055 Msa0579510:intron 5.0%
!!! TATTTTAATTTTTTTTTCTT+TGG + chr4_1:84237853-84237872 Msa0579510:intron 5.0%
!!! AATTAACTATTTATATTTTA+AGG + chr4_1:84239188-84239207 Msa0579510:intron 5.0%
GGCTTAGAAAGACGCAAAGG+GGG - chr4_1:84236199-84236218 None:intergenic 50.0%
GGGCTTAGAAAGACGCAAAG+GGG - chr4_1:84236200-84236219 None:intergenic 50.0%
CGTCTTTCTAAGCCCTTGAG+CGG + chr4_1:84236205-84236224 Msa0579510:five_prime_UTR 50.0%
GTCTTTCTAAGCCCTTGAGC+GGG + chr4_1:84236206-84236225 Msa0579510:five_prime_UTR 50.0%
GTATGTTTGTGCCCGCTCAA+GGG - chr4_1:84236220-84236239 None:intergenic 50.0%
AGTATGTTTGTGCCCGCTCA+AGG - chr4_1:84236221-84236240 None:intergenic 50.0%
GCTTCGACAGAGCGATTCTT+TGG - chr4_1:84236426-84236445 None:intergenic 50.0%
! GTTTTTGACGAGAGTGACGG+CGG - chr4_1:84236466-84236485 None:intergenic 50.0%
! GCGGTTTTTGACGAGAGTGA+CGG - chr4_1:84236469-84236488 None:intergenic 50.0%
CAACCATACGAAACCGTCTG+CGG - chr4_1:84236491-84236510 None:intergenic 50.0%
!!! TTCCCCCCAATTTTGGGGTA+TGG - chr4_1:84237192-84237211 None:intergenic 50.0%
! ACGGTTTCCCCCCAATTTTG+GGG - chr4_1:84237197-84237216 None:intergenic 50.0%
! CACGGTTTCCCCCCAATTTT+GGG - chr4_1:84237198-84237217 None:intergenic 50.0%
! TCACGGTTTCCCCCCAATTT+TGG - chr4_1:84237199-84237218 None:intergenic 50.0%
AAATTGGGGGGAAACCGTGA+TGG + chr4_1:84237199-84237218 Msa0579510:intron 50.0%
CTTAGACGCGTCTGGTTGAA+TGG + chr4_1:84238189-84238208 Msa0579510:intron 50.0%
GAAGGCCGCAAATAGTGTGA+TGG + chr4_1:84238452-84238471 Msa0579510:intron 50.0%
AGGTCACCTTCCCAGTTGTA+AGG - chr4_1:84238640-84238659 None:intergenic 50.0%
TCAGGTCATGTCTAGCCATG+AGG + chr4_1:84238756-84238775 Msa0579510:intron 50.0%
GTCTAGCCATGAGGACAAAG+AGG + chr4_1:84238765-84238784 Msa0579510:intron 50.0%
GCTATCACAAGAGGCGATAG+AGG + chr4_1:84239649-84239668 Msa0579510:CDS 50.0%
GTGGAGTTGAAGCTGTTGCA+AGG + chr4_1:84239747-84239766 Msa0579510:CDS 50.0%
AGCTGTTGCAAGGAAGCTGT+CGG + chr4_1:84239757-84239776 Msa0579510:CDS 50.0%
AGTGGCAAGCCCAATACCTA+TGG - chr4_1:84239945-84239964 None:intergenic 50.0%
GTATTGGGCTTGCCACTGAA+GGG + chr4_1:84239948-84239967 Msa0579510:CDS 50.0%
CAGGCAATCCCTACAGTTCA+TGG + chr4_1:84240051-84240070 Msa0579510:CDS 50.0%
GGAGATCAAGTTCCAGCTGA+TGG + chr4_1:84240184-84240203 Msa0579510:CDS 50.0%
CTAAAGTGCAGGATGGTCAG+GGG + chr4_1:84240311-84240330 Msa0579510:CDS 50.0%
AACTCTAAACGAGGGAGGAG+AGG + chr4_1:84240387-84240406 Msa0579510:CDS 50.0%
AGAGGATGAGACTCCATTGC+AGG + chr4_1:84240405-84240424 Msa0579510:CDS 50.0%
AAGCCTGGAGCCTTCCATTA+GGG - chr4_1:84241107-84241126 None:intergenic 50.0%
AAAGCCTGGAGCCTTCCATT+AGG - chr4_1:84241108-84241127 None:intergenic 50.0%
! GGAATGTTAGCTTCTCCCTG+AGG - chr4_1:84241303-84241322 None:intergenic 50.0%
GAACAGCTTCCTTTACCCCA+GGG - chr4_1:84241377-84241396 None:intergenic 50.0%
TGAACAGCTTCCTTTACCCC+AGG - chr4_1:84241378-84241397 None:intergenic 50.0%
AGCTGGAATAACCGTTCGCA+TGG + chr4_1:84241410-84241429 Msa0579510:CDS 50.0%
ATAACCGTTCGCATGGTCAC+TGG + chr4_1:84241417-84241436 Msa0579510:CDS 50.0%
ATCACCAGTGACCATGCGAA+CGG - chr4_1:84241424-84241443 None:intergenic 50.0%
CTTATGTTTGTCGAGCGGCA+AGG - chr4_1:84241675-84241694 None:intergenic 50.0%
! GGTGAGGTTGTTGCTGTTAC+TGG + chr4_1:84241722-84241741 Msa0579510:CDS 50.0%
! GTTGTTGCTGTTACTGGCGA+TGG + chr4_1:84241728-84241747 Msa0579510:CDS 50.0%
ATGTCTGCCTCATGCAATGC+GGG - chr4_1:84241767-84241786 None:intergenic 50.0%
GCATTGCATGAGGCAGACAT+TGG + chr4_1:84241767-84241786 Msa0579510:CDS 50.0%
GCAGACATTGGACTTGCCAT+GGG + chr4_1:84241779-84241798 Msa0579510:CDS 50.0%
ATCGCTCTGTCGAAGCTCTC+AGG + chr4_1:84236430-84236449 Msa0579510:CDS 55.0%
TCGTCAAAAACCGCCGCAGA+CGG + chr4_1:84236475-84236494 Msa0579510:CDS 55.0%
AAACACGGCTTAGACGCGTC+TGG + chr4_1:84238181-84238200 Msa0579510:intron 55.0%
TCACAAGAGGCGATAGAGGC+TGG + chr4_1:84239653-84239672 Msa0579510:CDS 55.0%
! GGTATTGGGCTTGCCACTGA+AGG + chr4_1:84239947-84239966 Msa0579510:CDS 55.0%
GGTTCCTGAAGGGTTACCAC+TGG + chr4_1:84240618-84240637 Msa0579510:CDS 55.0%
ACAGCCAGTGGTAACCCTTC+AGG - chr4_1:84240625-84240644 None:intergenic 55.0%
AGACTGAGTGTCACAGCCAG+TGG - chr4_1:84240637-84240656 None:intergenic 55.0%
GTACTTGTCGGCCTCCCTAA+TGG + chr4_1:84241090-84241109 Msa0579510:CDS 55.0%
TTGTCGGCCTCCCTAATGGA+AGG + chr4_1:84241094-84241113 Msa0579510:CDS 55.0%
AGGCTCCAGGCTTTCTGCAA+AGG + chr4_1:84241114-84241133 Msa0579510:CDS 55.0%
ACGATATTTGCGCGGTCTGC+AGG - chr4_1:84241207-84241226 None:intergenic 55.0%
ATCAAGGATCCTGTACGCCC+TGG + chr4_1:84241357-84241376 Msa0579510:CDS 55.0%
TCAAGGATCCTGTACGCCCT+GGG + chr4_1:84241358-84241377 Msa0579510:CDS 55.0%
TGTCTGCCTCATGCAATGCG+GGG - chr4_1:84241766-84241785 None:intergenic 55.0%
GGCAGACATTGGACTTGCCA+TGG + chr4_1:84241778-84241797 Msa0579510:CDS 55.0%
CTCAGTTCCAGCTATGCCCA+TGG - chr4_1:84241798-84241817 None:intergenic 55.0%
CATGGGCATAGCTGGAACTG+AGG + chr4_1:84241796-84241815 Msa0579510:CDS 55.0%
GCTCTGTCGAAGCTCTCAGG+AGG + chr4_1:84236433-84236452 Msa0579510:CDS 60.0%
CTGTCGAAGCTCTCAGGAGG+TGG + chr4_1:84236436-84236455 Msa0579510:CDS 60.0%
CCATACGAAACCGTCTGCGG+CGG - chr4_1:84236488-84236507 None:intergenic 60.0%
TTGGGCTTGCCACTGAAGGG+TGG + chr4_1:84239951-84239970 Msa0579510:CDS 60.0%
TGCCACTGAAGGGTGGCCAA+AGG + chr4_1:84239958-84239977 Msa0579510:CDS 60.0%
GCCACTGAAGGGTGGCCAAA+GGG + chr4_1:84239959-84239978 Msa0579510:CDS 60.0%
TCCCTTTGGCCACCCTTCAG+TGG - chr4_1:84239963-84239982 None:intergenic 60.0%
CCTGGAGCCTTCCATTAGGG+AGG - chr4_1:84241104-84241123 None:intergenic 60.0%
CCTCCCTAATGGAAGGCTCC+AGG + chr4_1:84241101-84241120 Msa0579510:CDS 60.0%
CAAGGATCCTGTACGCCCTG+GGG + chr4_1:84241359-84241378 Msa0579510:CDS 60.0%
TCCTGTACGCCCTGGGGTAA+AGG + chr4_1:84241365-84241384 Msa0579510:CDS 60.0%
TCCTTTACCCCAGGGCGTAC+AGG - chr4_1:84241369-84241388 None:intergenic 60.0%
GTCTGCCTCATGCAATGCGG+GGG - chr4_1:84241765-84241784 None:intergenic 60.0%
GGACTTGCCATGGGCATAGC+TGG + chr4_1:84241788-84241807 Msa0579510:CDS 60.0%
CCGCCGCAGACGGTTTCGTA+TGG + chr4_1:84236485-84236504 Msa0579510:CDS 65.0%
TGACGCCCCCGCATTGCATG+AGG + chr4_1:84241757-84241776 Msa0579510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 84236141 84241838 84236141 ID=Msa0579510;Name=Msa0579510
chr4_1 mRNA 84236141 84241838 84236141 ID=Msa0579510-mRNA-1;Parent=Msa0579510;Name=Msa0579510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=246|1|0.75|1|1|1|4|0|784
chr4_1 exon 84236141 84236560 84236141 ID=Msa0579510-mRNA-1:exon:30820;Parent=Msa0579510-mRNA-1
chr4_1 exon 84239469 84239523 84239469 ID=Msa0579510-mRNA-1:exon:30821;Parent=Msa0579510-mRNA-1
chr4_1 exon 84239627 84241572 84239627 ID=Msa0579510-mRNA-1:exon:30822;Parent=Msa0579510-mRNA-1
chr4_1 exon 84241659 84241838 84241659 ID=Msa0579510-mRNA-1:exon:30823;Parent=Msa0579510-mRNA-1
chr4_1 five_prime_UTR 84236141 84236386 84236141 ID=Msa0579510-mRNA-1:five_prime_utr;Parent=Msa0579510-mRNA-1
chr4_1 CDS 84236387 84236560 84236387 ID=Msa0579510-mRNA-1:cds;Parent=Msa0579510-mRNA-1
chr4_1 CDS 84239469 84239523 84239469 ID=Msa0579510-mRNA-1:cds;Parent=Msa0579510-mRNA-1
chr4_1 CDS 84239627 84241572 84239627 ID=Msa0579510-mRNA-1:cds;Parent=Msa0579510-mRNA-1
chr4_1 CDS 84241659 84241838 84241659 ID=Msa0579510-mRNA-1:cds;Parent=Msa0579510-mRNA-1
Gene Sequence

>Msa0579510

ATGGAGTGGAATCTGCTCAAGGATTTCGAGCTTGAACCAAAGAATCGCTCTGTCGAAGCTCTCAGGAGGTGGAGATCCGCCGTCACTCTCGTCAAAAACCGCCGCAGACGGTTTCGTATGGTTGCCGATCTTGACAAACGCTCCGAAGCTGAACAAATTAAGCAGGGAATTAAGGAAAAGATTCGAATAGCTCTCTATGTTCAGAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACAAGCTATCACAAGAGGCGATAGAGGCTGGTTTTGACATTCATCCAAATGAGATTGCTTCTATTGTTCGTAGTCAGGATTATAAGAACTTGAGTAATAATGGTGGAGTTGAAGCTGTTGCAAGGAAGCTGTCGGTTTCTATATATGAAGGTGTCAGTGAAGCAAGTGTAGATTGCAGACAACAAATCTTTGGGGCCAATCGTTATACAGAGAAACCTTCGAGAACATTCCTGATGTTTGTATGGGATGCATTGCAGGACTTGACTCTAACCATTCTTATGGTTTGTGCTGTAGTTTCCATAGGTATTGGGCTTGCCACTGAAGGGTGGCCAAAGGGAACATATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTAGTCATTGTTACCGCTGTTAGTGACTACAGGCAATCCCTACAGTTCATGGATTTGGACAAAGAGAAAAAAAAGATCTTTGTTCAGGTCAACAGGGATGGGAAAAGAAAGAAGATCTCAATATATGATGTAGTAGTTGGTGATATTGTTCATTTGTCTACTGGAGATCAAGTTCCAGCTGATGGAATTTATATATCTGGATACTCTTTGCTTATCGATGAATCGAGTTTGTCAGGTGAGAGCGAACCTGTATTTATAACCGAAAAACACCCTTTCCTTCTCTCTGGAACTAAAGTGCAGGATGGTCAGGGGAAAATGTTAGTAACAACTGTTGGTATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAACGAGGGAGGAGAGGATGAGACTCCATTGCAGGTTAAATTGAATGGAGTTGCTACAATAATTGGTAAAATCGGTTTATTTTTTGCCATTGTGACATTTTTGGTATTGACAGTGAGGTTTCTTGTTGAAAAAGCACTTCATGGTGAGTTTGGTAATTGGTCTTCAAATGATGCAACGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGGTTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACATGGCACTTGTGAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTAACAACTAACCATATGGTGGTTAACAAAATATGGATATGTGAAAATACCACACAACTGAAAGGTAAAGAGAGTGCTGATGAACTGAAAACAAACATATCTGAAGGAGTTTTAAGCATCCTTTCGCAAGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAAACGGAAAGAACACAATATTGGGAAGCCCAACAGAATCAGCGTTATTAGAATTTGGCTTGCTTTTGGGTTCTGAGTTTGATGCTCGCAACCGCAGTAAAGCTTATAAGATACTTAAGCTTGAGCCGTTTAATTCCGTCCGGAAGAAGATGTCTGTACTTGTCGGCCTCCCTAATGGAAGGCTCCAGGCTTTCTGCAAAGGTGCATCTGAAATAATATTAGAAATGTGTGATAAAATTATTGATTGCAATGGAGAAGTCGTTGATCTTCCTGCAGACCGCGCAAATATCGTCTCAGATGTGATAAATAGCTTTGCCTCTGAAGCTTTAAGAACTCTGTGTTTGGCTGTCAAAGATATAAATGAACCTCAGGGAGAAGCTAACATTCCTGATAGTGGTTATACTCTAATAGCTTTAGTTGGAATCAAGGATCCTGTACGCCCTGGGGTAAAGGAAGCTGTTCAAACTTGTATTGCAGCTGGAATAACCGTTCGCATGGTCACTGGTGATAACATAAATACAGCTAAAGCCATAGCTAAAGAATGTGGTATACTTACTGATGATGGTGTAGCCATAGAGGGACCAAGTTTTCGTGAATTATCTGATGAGCAAATGAAGGATATCATACCAAGAATCCAGGTAATGGCACGATCCTTGCCGCTCGACAAACATAAGTTAGTGACCAATTTGAGAAATATGTTTGGTGAGGTTGTTGCTGTTACTGGCGATGGAACAAATGACGCCCCCGCATTGCATGAGGCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTCATCTCTCTTTTTTATGA
Protein sequence

>Msa0579510

MEWNLLKDFELEPKNRSVEALRRWRSAVTLVKNRRRRFRMVADLDKRSEAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKLSQEAIEAGFDIHPNEIASIVRSQDYKNLSNNGGVEAVARKLSVSIYEGVSEASVDCRQQIFGANRYTEKPSRTFLMFVWDALQDLTLTILMVCAVVSIGIGLATEGWPKGTYDGVGIILSIFLVVIVTAVSDYRQSLQFMDLDKEKKKIFVQVNRDGKRKKISIYDVVVGDIVHLSTGDQVPADGIYISGYSLLIDESSLSGESEPVFITEKHPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLFFAIVTFLVLTVRFLVEKALHGEFGNWSSNDATKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDMALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICENTTQLKGKESADELKTNISEGVLSILSQAIFQNTSAEVVKDKNGKNTILGSPTESALLEFGLLLGSEFDARNRSKAYKILKLEPFNSVRKKMSVLVGLPNGRLQAFCKGASEIILEMCDKIIDCNGEVVDLPADRANIVSDVINSFASEALRTLCLAVKDINEPQGEANIPDSGYTLIALVGIKDPVRPGVKEAVQTCIAAGITVRMVTGDNINTAKAIAKECGILTDDGVAIEGPSFRELSDEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVHLSFL*