Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580650 | XP_013465779.1 | 96.212 | 792 | 30 | 0 | 1 | 792 | 1 | 792 | 0.0 | 1580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580650 | sp|F4ISL7|TI236_ARATH | 48.630 | 730 | 322 | 13 | 84 | 792 | 57 | 754 | 0.0 | 621 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580650 | A0A072VNV3 | 96.212 | 792 | 30 | 0 | 1 | 792 | 1 | 792 | 0.0 | 1580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0398060 | Msa0580650 | 0.812717 | 3.683863e-51 | -8.615850e-47 |
| Msa0524200 | Msa0580650 | -0.814438 | 1.540982e-51 | -8.615850e-47 |
| Msa0530210 | Msa0580650 | 0.810947 | 8.946421e-51 | -8.615850e-47 |
| Msa0580650 | Msa0662850 | 0.806633 | 7.481472e-50 | -8.615850e-47 |
| Msa0580650 | Msa0978000 | 0.801392 | 9.200963e-49 | -8.615850e-47 |
| Msa0580650 | Msa1310260 | 0.832079 | 1.160064e-55 | -8.615850e-47 |
| Msa0580650 | Msa1367390 | -0.819010 | 1.453387e-52 | -8.615850e-47 |
| Msa0580650 | Msa1438310 | 0.976135 | 3.001061e-141 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580650 | MtrunA17_Chr1g0148561 | 96.212 | 792 | 30 | 0 | 1 | 792 | 1 | 792 | 0.0 | 1580 |
| Msa0580650 | MtrunA17_Chr3g0138521 | 57.772 | 386 | 152 | 3 | 84 | 469 | 60 | 434 | 6.14e-132 | 433 |
| Msa0580650 | MtrunA17_Chr3g0138521 | 73.810 | 168 | 44 | 0 | 625 | 792 | 436 | 603 | 1.10e-78 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580650 | AT2G25660.3 | 48.630 | 730 | 322 | 13 | 84 | 792 | 57 | 754 | 0.0 | 621 |
| Msa0580650 | AT2G25660.4 | 48.630 | 730 | 322 | 13 | 84 | 792 | 57 | 754 | 0.0 | 621 |
| Msa0580650 | AT2G25660.2 | 48.630 | 730 | 322 | 13 | 84 | 792 | 57 | 754 | 0.0 | 621 |
| Msa0580650 | AT2G25660.1 | 48.630 | 730 | 322 | 13 | 84 | 792 | 57 | 754 | 0.0 | 621 |
Find 193 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATCTTGCTTTCTTTC+TGG | 0.078571 | 4_1:+85854415 | Msa0580650:CDS |
| TTCTCTCCTGTCTGTAAATT+TGG | 0.128707 | 4_1:-85854127 | None:intergenic |
| TCGGGTCAGGGTTTCGATTT+TGG | 0.188953 | 4_1:+85853723 | Msa0580650:CDS |
| TTGACATTATTGAACAAAAT+TGG | 0.194826 | 4_1:+85855308 | Msa0580650:CDS |
| TAAGTTTCCCATTGAGGATT+TGG | 0.229207 | 4_1:-85854322 | None:intergenic |
| GGTTCACCTGTGCATGTCTA+AGG | 0.234989 | 4_1:+85855948 | Msa0580650:intron |
| CTCCCTTTAGACCACATAAT+TGG | 0.239917 | 4_1:-85855489 | None:intergenic |
| TCAAGCTGTCCATGCAAATT+TGG | 0.240585 | 4_1:-85855982 | None:intergenic |
| TTGTTGCTCATTGTTGCTTA+TGG | 0.246466 | 4_1:-85852466 | None:intergenic |
| CGATACGAAGCACGCAGATT+TGG | 0.268868 | 4_1:+85853676 | Msa0580650:CDS |
| TAAGACGCTTCCTGTTATAT+TGG | 0.276182 | 4_1:+85854537 | Msa0580650:CDS |
| CCTGTTGAAGACGATGATTT+TGG | 0.304684 | 4_1:+85854238 | Msa0580650:CDS |
| AAATTCTCACTAACAAAATA+TGG | 0.315613 | 4_1:-85852942 | None:intergenic |
| GAGTCCTTGCTTGTGAAATT+TGG | 0.322268 | 4_1:+85854361 | Msa0580650:CDS |
| TATATGTCGTATCAAATATA+AGG | 0.323279 | 4_1:-85856093 | None:intergenic |
| GATCCAGAGATCTGGGAATT+TGG | 0.335232 | 4_1:+85854044 | Msa0580650:CDS |
| ATTCAAAGGGATGTTGAGTT+TGG | 0.335585 | 4_1:+85853137 | Msa0580650:CDS |
| CTCATTGTTGCTTATGGCTA+TGG | 0.336427 | 4_1:-85852460 | None:intergenic |
| AGGTTCCGACGGTGAAGATT+AGG | 0.350794 | 4_1:+85853243 | Msa0580650:CDS |
| TTTGGTAATGATAATTCGTC+TGG | 0.352815 | 4_1:+85854256 | Msa0580650:CDS |
| TTAAAATGTGCTAATGAATC+AGG | 0.358797 | 4_1:+85852828 | Msa0580650:CDS |
| ATGTTGAGTTTGGTAAAGTT+AGG | 0.373114 | 4_1:+85853147 | Msa0580650:CDS |
| GGAGTGAAATTTCTCGGGTC+AGG | 0.375352 | 4_1:+85853710 | Msa0580650:CDS |
| AGTGTCAAATGAGGAGAGTA+TGG | 0.377250 | 4_1:-85856064 | None:intergenic |
| CATATGGTGACGGGGAAGTT+AGG | 0.388300 | 4_1:+85854599 | Msa0580650:CDS |
| TTTGTTGCCTAGTGTTTGTT+TGG | 0.389415 | 4_1:+85853100 | Msa0580650:CDS |
| TGCTGCACGATCCAGAGATC+TGG | 0.390339 | 4_1:+85854036 | Msa0580650:CDS |
| CTTAACTCAGTTGAACTACT+TGG | 0.395955 | 4_1:-85853581 | None:intergenic |
| TGAACAGAATCCAATATAAC+AGG | 0.397359 | 4_1:-85854547 | None:intergenic |
| TGTTACTGCTACATTGTTGT+TGG | 0.398345 | 4_1:-85852498 | None:intergenic |
| AACCTCGTTTATGAGAAATA+TGG | 0.414019 | 4_1:+85854387 | Msa0580650:CDS |
| GGGGATACCGTTTACGGAAG+GGG | 0.418603 | 4_1:+85853367 | Msa0580650:CDS |
| GGGATACCGTTTACGGAAGG+GGG | 0.419771 | 4_1:+85853368 | Msa0580650:CDS |
| AACAGATAAAATTGAAGTCT+TGG | 0.424949 | 4_1:+85854210 | Msa0580650:CDS |
| GCATTTGGAGTGAAATTTCT+CGG | 0.427101 | 4_1:+85853704 | Msa0580650:CDS |
| CGCATACATGTGCATTTAAG+TGG | 0.428050 | 4_1:+85855217 | Msa0580650:CDS |
| TGAAAATAAGTTTCCCATTG+AGG | 0.429042 | 4_1:-85854328 | None:intergenic |
| GTGCGAGGTGGGAAAGAGAA+AGG | 0.430072 | 4_1:+85853468 | Msa0580650:CDS |
| TGAGAATCATTGTAGGGTCT+AGG | 0.430577 | 4_1:-85852596 | None:intergenic |
| GTTTATACTGCTGTATTATG+TGG | 0.430963 | 4_1:+85853020 | Msa0580650:CDS |
| TTGAGACCTTTGTTGAAAGA+AGG | 0.432789 | 4_1:+85852975 | Msa0580650:CDS |
| GTTACTGCTACATTGTTGTT+GGG | 0.435811 | 4_1:-85852497 | None:intergenic |
| ATTGTTGCAGAGCCTGTTGA+TGG | 0.436486 | 4_1:+85854484 | Msa0580650:CDS |
| CCAAAATCATCGTCTTCAAC+AGG | 0.441197 | 4_1:-85854238 | None:intergenic |
| CGTTGGAGGCATGTTCGATT+GGG | 0.442328 | 4_1:+85853192 | Msa0580650:CDS |
| CATGGACAGCTTGATGTGAC+AGG | 0.448156 | 4_1:+85855991 | Msa0580650:CDS |
| AAGTGTTGCAATTACTCTAA+AGG | 0.448480 | 4_1:+85852708 | Msa0580650:CDS |
| GATTTAAAAGGAAGGCTAAT+GGG | 0.448690 | 4_1:+85853777 | Msa0580650:CDS |
| TTGGTTGGGGATACCGTTTA+CGG | 0.448882 | 4_1:+85853361 | Msa0580650:CDS |
| GTTAAAATGTGCTAATGAAA+AGG | 0.453600 | 4_1:+85852917 | Msa0580650:CDS |
| ATTCCAATTATGTGGTCTAA+AGG | 0.453696 | 4_1:+85855486 | Msa0580650:CDS |
| TAAGTGGAAATTGTAATACT+TGG | 0.454135 | 4_1:+85855233 | Msa0580650:CDS |
| AGATTTAAAAGGAAGGCTAA+TGG | 0.454210 | 4_1:+85853776 | Msa0580650:CDS |
| CATTTGGAGTGAAATTTCTC+GGG | 0.458568 | 4_1:+85853705 | Msa0580650:CDS |
| CGAGAACGAGGAGGCTTGCA+AGG | 0.461432 | 4_1:+85853435 | Msa0580650:CDS |
| GGGGAAGGTGGTTGTTGATG+CGG | 0.462487 | 4_1:+85853292 | Msa0580650:CDS |
| TACTTATACTTCCAGGGAGA+TGG | 0.464011 | 4_1:+85855153 | Msa0580650:intron |
| GGACCAAATTCCCAGATCTC+TGG | 0.464032 | 4_1:-85854047 | None:intergenic |
| AGTGTTGCAATTACTCTAAA+GGG | 0.465190 | 4_1:+85852709 | Msa0580650:CDS |
| AATTAGAGAAATTTAACGCT+TGG | 0.465650 | 4_1:-85852746 | None:intergenic |
| TTACTCTAAAGGGTGTCGTT+TGG | 0.466540 | 4_1:+85852719 | Msa0580650:CDS |
| GGTTCCGACGGTGAAGATTA+GGG | 0.467757 | 4_1:+85853244 | Msa0580650:CDS |
| GTGAAGATGGGATAGATTAT+CGG | 0.468771 | 4_1:+85853411 | Msa0580650:CDS |
| TTCCAATTATGTGGTCTAAA+GGG | 0.470517 | 4_1:+85855487 | Msa0580650:CDS |
| CAACTATTAGATGCTCCGTC+AGG | 0.476492 | 4_1:+85856024 | Msa0580650:CDS |
| GTTCTACTATTAGCATTAGC+AGG | 0.480267 | 4_1:-85854190 | None:intergenic |
| TGAGACCTTTGTTGAAAGAA+GGG | 0.480401 | 4_1:+85852976 | Msa0580650:CDS |
| TTCACAAGCAAGGACTCAAA+TGG | 0.481347 | 4_1:-85854355 | None:intergenic |
| CTGACGGAGCATCTAATAGT+TGG | 0.481699 | 4_1:-85856023 | None:intergenic |
| GTGGAAATTGTAATACTTGG+AGG | 0.486615 | 4_1:+85855236 | Msa0580650:CDS |
| ACGTTGGAGGCATGTTCGAT+TGG | 0.488432 | 4_1:+85853191 | Msa0580650:CDS |
| ATCAATCACAAGGGAAGGAT+GGG | 0.489958 | 4_1:+85853882 | Msa0580650:CDS |
| CCCCTCCTCAAACTCGCAAA+AGG | 0.491850 | 4_1:-85853272 | None:intergenic |
| TTTACATCTGAAAATTTGGT+TGG | 0.492237 | 4_1:+85854292 | Msa0580650:CDS |
| GGGAGTAAGATCTATGCATC+TGG | 0.492566 | 4_1:+85853797 | Msa0580650:CDS |
| GCTAGGGAGGCTGCTGAGGT+TGG | 0.493613 | 4_1:+85853500 | Msa0580650:CDS |
| GTGGTGTGTGTATGTTGGTA+TGG | 0.494483 | 4_1:+85853039 | Msa0580650:CDS |
| AGGGAGATGGAGAATGTCAA+TGG | 0.495434 | 4_1:+85855166 | Msa0580650:intron |
| TGGGGATACCGTTTACGGAA+GGG | 0.496649 | 4_1:+85853366 | Msa0580650:CDS |
| GGAGGAAGGTGGTGCGAGGT+GGG | 0.498668 | 4_1:+85853457 | Msa0580650:CDS |
| ACCGTTGAGTATTACGTTGG+AGG | 0.498843 | 4_1:+85853178 | Msa0580650:CDS |
| GTGCCAAGCCAAATCCTCAA+TGG | 0.498877 | 4_1:+85854314 | Msa0580650:CDS |
| AACGAGGAGGCTTGCAAGGG+AGG | 0.499615 | 4_1:+85853439 | Msa0580650:CDS |
| GAGTGAAATTTCTCGGGTCA+GGG | 0.501897 | 4_1:+85853711 | Msa0580650:CDS |
| CAGATATTCTATCCGAAGAC+GGG | 0.504233 | 4_1:+85855260 | Msa0580650:CDS |
| ATGTTCGATTGGGCCGCATA+AGG | 0.504398 | 4_1:+85853202 | Msa0580650:CDS |
| GCACATGTATGCGACTATAG+TGG | 0.505314 | 4_1:-85855207 | None:intergenic |
| TTGGGGATACCGTTTACGGA+AGG | 0.506581 | 4_1:+85853365 | Msa0580650:CDS |
| TGATTCTTGAGAATCATTGT+AGG | 0.509736 | 4_1:-85852603 | None:intergenic |
| TGCCAAGCCAAATCCTCAAT+GGG | 0.512422 | 4_1:+85854315 | Msa0580650:CDS |
| GATCAATCACAAGGGAAGGA+TGG | 0.512951 | 4_1:+85853881 | Msa0580650:CDS |
| GAGAATCATTGTAGGGTCTA+GGG | 0.519193 | 4_1:-85852595 | None:intergenic |
| ACAAAATCTAGCCCATCAAC+AGG | 0.519280 | 4_1:-85854496 | None:intergenic |
| TGCTACTTGCATATGGTGAC+GGG | 0.519766 | 4_1:+85854590 | Msa0580650:CDS |
| TTCCCATTGAGGATTTGGCT+TGG | 0.520183 | 4_1:-85854317 | None:intergenic |
| GCGGCGGTAAGTGAGGTTGA+TGG | 0.520845 | 4_1:+85853959 | Msa0580650:CDS |
| AGAAAGGGATGAAGCGGCTA+GGG | 0.523009 | 4_1:+85853484 | Msa0580650:CDS |
| TTTCAGATGTAAAATCTGGT+TGG | 0.526802 | 4_1:-85854282 | None:intergenic |
| AGGAGGCTTGCAAGGGAGGA+AGG | 0.529600 | 4_1:+85853443 | Msa0580650:CDS |
| GTGTGTATGTTGGTATGGTA+TGG | 0.535325 | 4_1:+85853044 | Msa0580650:CDS |
| TTCTGCACAACCAACACACT+CGG | 0.535694 | 4_1:-85853326 | None:intergenic |
| TTGAGTTTGGTAAAGTTAGG+AGG | 0.535710 | 4_1:+85853150 | Msa0580650:CDS |
| GGGAGGAAGGTGGTGCGAGG+TGG | 0.538969 | 4_1:+85853456 | Msa0580650:CDS |
| GATTCTTGAGAATCATTGTA+GGG | 0.540092 | 4_1:-85852602 | None:intergenic |
| CCCTCGGTAGATGGAAATGT+TGG | 0.540191 | 4_1:+85854070 | Msa0580650:CDS |
| GAAGCATGATCATCGATTCA+TGG | 0.540624 | 4_1:+85853637 | Msa0580650:CDS |
| CTAGAGTATTACCGGGGCAT+AGG | 0.541788 | 4_1:+85853747 | Msa0580650:CDS |
| TGCGAGGTGGGAAAGAGAAA+GGG | 0.542913 | 4_1:+85853469 | Msa0580650:CDS |
| GAGAAAGGGATGAAGCGGCT+AGG | 0.546899 | 4_1:+85853483 | Msa0580650:CDS |
| TCCTAGAGATTCCAATTATG+TGG | 0.547123 | 4_1:+85855478 | Msa0580650:CDS |
| GCTGAAATTGAAAAGGGTGA+AGG | 0.549396 | 4_1:-85852650 | None:intergenic |
| GGATACCGTTTACGGAAGGG+GGG | 0.549414 | 4_1:+85853369 | Msa0580650:CDS |
| GCTGCACGATCCAGAGATCT+GGG | 0.549473 | 4_1:+85854037 | Msa0580650:CDS |
| TTCATGTGGGGAGGTTCCGA+CGG | 0.553854 | 4_1:+85853232 | Msa0580650:CDS |
| CGTGAGCCAAATTTACAGAC+AGG | 0.553987 | 4_1:+85854121 | Msa0580650:CDS |
| TTCAGAAGAATCATCGAAGC+GGG | 0.554421 | 4_1:-85852563 | None:intergenic |
| GATTAGTGAGTATATTCAAA+GGG | 0.554727 | 4_1:+85853124 | Msa0580650:CDS |
| CTAATCACCAAACAAACACT+AGG | 0.556359 | 4_1:-85853107 | None:intergenic |
| TTGGTAATGATAATTCGTCT+GGG | 0.557761 | 4_1:+85854257 | Msa0580650:CDS |
| TCTCTCCCTTAGACATGCAC+AGG | 0.557940 | 4_1:-85855954 | None:intergenic |
| GTGTCAAATGAGGAGAGTAT+GGG | 0.558431 | 4_1:-85856063 | None:intergenic |
| ATTATGTGGTGTGTGTATGT+TGG | 0.560264 | 4_1:+85853034 | Msa0580650:CDS |
| TGAAAATTTGCAATCTTGTG+AGG | 0.560356 | 4_1:+85854156 | Msa0580650:CDS |
| TAGATTATCGGACGAGAACG+AGG | 0.562527 | 4_1:+85853423 | Msa0580650:CDS |
| AGCGGCTAGGGAGGCTGCTG+AGG | 0.565068 | 4_1:+85853496 | Msa0580650:CDS |
| GTCTGATGCGAGTGTGAAAG+TGG | 0.569041 | 4_1:+85854456 | Msa0580650:CDS |
| GGGAGATGGAGAATGTCAAT+GGG | 0.569857 | 4_1:+85855167 | Msa0580650:intron |
| AATGTTTGAACGTAGCGCAT+CGG | 0.572899 | 4_1:+85853838 | Msa0580650:CDS |
| TCGGTAGATGGAAATGTTGG+TGG | 0.573549 | 4_1:+85854073 | Msa0580650:CDS |
| AGGAAATGAAGTGTCAAATG+AGG | 0.573993 | 4_1:-85856073 | None:intergenic |
| ATGCTACTTGCATATGGTGA+CGG | 0.583158 | 4_1:+85854589 | Msa0580650:CDS |
| CAAGGGAGGAAGGTGGTGCG+AGG | 0.583298 | 4_1:+85853453 | Msa0580650:CDS |
| AAACATTCAGAAGATGATGC+AGG | 0.583790 | 4_1:-85853908 | None:intergenic |
| TTTGTTTCTGAGAGGAATTG+TGG | 0.584333 | 4_1:+85853527 | Msa0580650:CDS |
| TAGACCAAATTTCACAAGCA+AGG | 0.584585 | 4_1:-85854365 | None:intergenic |
| GTTCACCTGTGCATGTCTAA+GGG | 0.585108 | 4_1:+85855949 | Msa0580650:CDS |
| TTCACCGTTGAGTATTACGT+TGG | 0.588582 | 4_1:+85853175 | Msa0580650:CDS |
| TAAAGGGAGGGCTAGTGGCG+AGG | 0.591029 | 4_1:+85855503 | Msa0580650:CDS |
| AAAAGCCCTTCTTTCAACAA+AGG | 0.592542 | 4_1:-85852981 | None:intergenic |
| GGTAATGATAATTCGTCTGG+GGG | 0.592787 | 4_1:+85854259 | Msa0580650:CDS |
| TTCGATTGGGCCGCATAAGG+AGG | 0.593965 | 4_1:+85853205 | Msa0580650:CDS |
| AAGGGATGAAGCGGCTAGGG+AGG | 0.595423 | 4_1:+85853487 | Msa0580650:CDS |
| TGTTCATTTCAAAAGTGCAA+CGG | 0.596162 | 4_1:+85854564 | Msa0580650:CDS |
| TGATTAGTGAGTATATTCAA+AGG | 0.596852 | 4_1:+85853123 | Msa0580650:CDS |
| TCGTGATCAATCACAAGGGA+AGG | 0.597196 | 4_1:+85853877 | Msa0580650:CDS |
| TCAGATATTCTATCCGAAGA+CGG | 0.597639 | 4_1:+85855259 | Msa0580650:CDS |
| CATGAAAACTCCTCCTTATG+CGG | 0.603246 | 4_1:-85853215 | None:intergenic |
| CAATTATGTGGTCTAAAGGG+AGG | 0.606447 | 4_1:+85855490 | Msa0580650:CDS |
| TTGGTTACTTTGTTTCTGAG+AGG | 0.606485 | 4_1:+85853519 | Msa0580650:CDS |
| TTTGACGCAGCCGAGTGTGT+TGG | 0.607286 | 4_1:+85853316 | Msa0580650:CDS |
| TGGTAATGATAATTCGTCTG+GGG | 0.607563 | 4_1:+85854258 | Msa0580650:CDS |
| CTCGTTTATGAGAAATATGG+AGG | 0.608506 | 4_1:+85854390 | Msa0580650:CDS |
| ATCTGAAGGTGATGGTGCAA+AGG | 0.610636 | 4_1:+85853553 | Msa0580650:CDS |
| TACTTTCGTGATCAATCACA+AGG | 0.612471 | 4_1:+85853872 | Msa0580650:CDS |
| TGGTCTAAAGGGAGGGCTAG+TGG | 0.614145 | 4_1:+85855498 | Msa0580650:CDS |
| CTGTCTGTAAATTTGGCTCA+CGG | 0.616653 | 4_1:-85854120 | None:intergenic |
| AATGCAAAATCTGTTACCCT+TGG | 0.621382 | 4_1:+85853983 | Msa0580650:CDS |
| GTATGGTCAGAATAAAGCTA+AGG | 0.622074 | 4_1:+85853061 | Msa0580650:CDS |
| ACGGTGATGCTACTTGCATA+TGG | 0.622924 | 4_1:+85854583 | Msa0580650:CDS |
| AATTATGTGGTCTAAAGGGA+GGG | 0.622971 | 4_1:+85855491 | Msa0580650:CDS |
| GGAAAGAGAAAGGGATGAAG+CGG | 0.628100 | 4_1:+85853478 | Msa0580650:CDS |
| CTCCATATTTCTCATAAACG+AGG | 0.629103 | 4_1:-85854389 | None:intergenic |
| TTGTTGCAGAGCCTGTTGAT+GGG | 0.630292 | 4_1:+85854485 | Msa0580650:CDS |
| AGGCTTGCAAGGGAGGAAGG+TGG | 0.631082 | 4_1:+85853446 | Msa0580650:CDS |
| GAGAACGAGGAGGCTTGCAA+GGG | 0.633776 | 4_1:+85853436 | Msa0580650:CDS |
| ACCACATAATTGGAATCTCT+AGG | 0.635370 | 4_1:-85855479 | None:intergenic |
| GAATCATGACGATGTGCATG+CGG | 0.636525 | 4_1:+85853940 | Msa0580650:CDS |
| GCCTCCAACGTAATACTCAA+CGG | 0.640775 | 4_1:-85853179 | None:intergenic |
| ACAGCTTGATGTGACAGGGT+TGG | 0.643432 | 4_1:+85855996 | Msa0580650:CDS |
| GATCATCGATTCATGGACAC+AGG | 0.644185 | 4_1:+85853644 | Msa0580650:CDS |
| CCAACATTTCCATCTACCGA+GGG | 0.644615 | 4_1:-85854070 | None:intergenic |
| AGATATTCTATCCGAAGACG+GGG | 0.650311 | 4_1:+85855261 | Msa0580650:CDS |
| ATGATGTGCAGCTGTTTGAA+CGG | 0.654538 | 4_1:+85855454 | Msa0580650:intron |
| TCAATCACAAGGGAAGGATG+GGG | 0.656768 | 4_1:+85853883 | Msa0580650:CDS |
| TGTGCATGCGGCGGTAAGTG+AGG | 0.658666 | 4_1:+85853952 | Msa0580650:CDS |
| TGTGGTGTATCTGAAGGTGA+TGG | 0.660757 | 4_1:+85853545 | Msa0580650:CDS |
| ACCAACATTTCCATCTACCG+AGG | 0.662673 | 4_1:-85854071 | None:intergenic |
| AAATCATCGTCTTCAACAGG+AGG | 0.680560 | 4_1:-85854235 | None:intergenic |
| ATGGACAGCTTGATGTGACA+GGG | 0.682697 | 4_1:+85855992 | Msa0580650:CDS |
| AACATTTCCATCTACCGAGG+GGG | 0.682804 | 4_1:-85854068 | None:intergenic |
| AGGAATTGTGGTGTATCTGA+AGG | 0.684189 | 4_1:+85853539 | Msa0580650:CDS |
| ATTATCGGACGAGAACGAGG+AGG | 0.684302 | 4_1:+85853426 | Msa0580650:CDS |
| TAGTTCAACTGAGTTAAGTG+AGG | 0.686474 | 4_1:+85853586 | Msa0580650:CDS |
| ATTCAGAAGAATCATCGAAG+CGG | 0.691406 | 4_1:-85852564 | None:intergenic |
| CGTACCCTAATCTTCACCGT+CGG | 0.707450 | 4_1:-85853248 | None:intergenic |
| TCAATCAAAATCATTCATAG+CGG | 0.713170 | 4_1:+85852431 | Msa0580650:five_prime_UTR |
| GATATTCTATCCGAAGACGG+GGG | 0.735694 | 4_1:+85855262 | Msa0580650:CDS |
| GCTACTTGCATATGGTGACG+GGG | 0.742470 | 4_1:+85854591 | Msa0580650:CDS |
| CAACATTTCCATCTACCGAG+GGG | 0.742606 | 4_1:-85854069 | None:intergenic |
| TCATGACGATGTGCATGCGG+CGG | 0.752041 | 4_1:+85853943 | Msa0580650:CDS |
| ACTTTCGTGATCAATCACAA+GGG | 0.752314 | 4_1:+85853873 | Msa0580650:CDS |
| TTTGGTCTAGAGTATTACCG+GGG | 0.754915 | 4_1:+85853741 | Msa0580650:CDS |
| TGATGCGAGTGTGAAAGTGG+AGG | 0.760195 | 4_1:+85854459 | Msa0580650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAATCTTATTACTAT+TGG | + | chr4_1:85855060-85855079 | Msa0580650:intron | 15.0% |
| !!! | TATATTCTATTTGATAGTTT+AGG | + | chr4_1:85855558-85855577 | Msa0580650:intron | 15.0% |
| !!! | AATCATCACACTTTATTTTT+CGG | + | chr4_1:85852621-85852640 | Msa0580650:CDS | 20.0% |
| !!! | ATTTTTCTGGTAAAAAAGTT+GGG | + | chr4_1:85852856-85852875 | Msa0580650:CDS | 20.0% |
| !! | AAATTCTCACTAACAAAATA+TGG | - | chr4_1:85852945-85852964 | None:intergenic | 20.0% |
| !!! | ATATTTTGTTAGTGAGAATT+TGG | + | chr4_1:85852944-85852963 | Msa0580650:CDS | 20.0% |
| !! | ATAGGAAAAACAGATTTAAA+AGG | + | chr4_1:85853765-85853784 | Msa0580650:CDS | 20.0% |
| !!! | AAATTTTCAGATGTAAAATC+TGG | - | chr4_1:85854289-85854308 | None:intergenic | 20.0% |
| !!! | AGATTTTACATCTGAAAATT+TGG | + | chr4_1:85854288-85854307 | Msa0580650:CDS | 20.0% |
| !! | TTGACATTATTGAACAAAAT+TGG | + | chr4_1:85855308-85855327 | Msa0580650:CDS | 20.0% |
| !! | AGTAAATGAAATTTAAGTCA+GGG | - | chr4_1:85855534-85855553 | None:intergenic | 20.0% |
| !! | AAGTAAATGAAATTTAAGTC+AGG | - | chr4_1:85855535-85855554 | None:intergenic | 20.0% |
| !!! | GGAGTAAAAGTATATTATAT+TGG | - | chr4_1:85855921-85855940 | None:intergenic | 20.0% |
| ! | TCAATCAAAATCATTCATAG+CGG | + | chr4_1:85852431-85852450 | Msa0580650:five_prime_UTR | 25.0% |
| !! | TTTTTCGCTGAAATTGAAAA+GGG | - | chr4_1:85852659-85852678 | None:intergenic | 25.0% |
| !!! | TTTTTTCGCTGAAATTGAAA+AGG | - | chr4_1:85852660-85852679 | None:intergenic | 25.0% |
| ! | AATTAGAGAAATTTAACGCT+TGG | - | chr4_1:85852749-85852768 | None:intergenic | 25.0% |
| !! | AATTTTTCTGCTCAAAATGT+TGG | + | chr4_1:85852765-85852784 | Msa0580650:CDS | 25.0% |
| !!! | AAAGACTTGATTTTGAGAAA+TGG | + | chr4_1:85852798-85852817 | Msa0580650:CDS | 25.0% |
| !!! | AAGACTTGATTTTGAGAAAT+GGG | + | chr4_1:85852799-85852818 | Msa0580650:CDS | 25.0% |
| ! | TTAAAATGTGCTAATGAATC+AGG | + | chr4_1:85852828-85852847 | Msa0580650:CDS | 25.0% |
| !!! | GATTTTTCTGGTAAAAAAGT+TGG | + | chr4_1:85852855-85852874 | Msa0580650:CDS | 25.0% |
| !! | GTAAAAAAGTTGGGAATTTT+AGG | + | chr4_1:85852865-85852884 | Msa0580650:CDS | 25.0% |
| ! | GTTAAAATGTGCTAATGAAA+AGG | + | chr4_1:85852917-85852936 | Msa0580650:CDS | 25.0% |
| ! | TGATTAGTGAGTATATTCAA+AGG | + | chr4_1:85853123-85853142 | Msa0580650:CDS | 25.0% |
| ! | GATTAGTGAGTATATTCAAA+GGG | + | chr4_1:85853124-85853143 | Msa0580650:CDS | 25.0% |
| !! | AAGAAAGATTTTACTTGGTT+GGG | + | chr4_1:85853347-85853366 | Msa0580650:CDS | 25.0% |
| ! | GAAAAACAGATTTAAAAGGA+AGG | + | chr4_1:85853769-85853788 | Msa0580650:CDS | 25.0% |
| !! | ACTAATATTTTCATCACCAA+GGG | - | chr4_1:85854002-85854021 | None:intergenic | 25.0% |
| ! | AACAGATAAAATTGAAGTCT+TGG | + | chr4_1:85854210-85854229 | Msa0580650:CDS | 25.0% |
| ! | TTTACATCTGAAAATTTGGT+TGG | + | chr4_1:85854292-85854311 | Msa0580650:CDS | 25.0% |
| !!! | AATAAGCTATAAGTTTTAGC+AGG | - | chr4_1:85854718-85854737 | None:intergenic | 25.0% |
| ! | TTTGACAATAATTCTTCTAG+AGG | + | chr4_1:85854750-85854769 | Msa0580650:intron | 25.0% |
| ! | TATCGAGATAAATACCTATA+AGG | - | chr4_1:85854808-85854827 | None:intergenic | 25.0% |
| ! | TACTCTTATGTCTTTATCTT+TGG | + | chr4_1:85854928-85854947 | Msa0580650:intron | 25.0% |
| ! | ATTCTTTACTTATACTTCCA+GGG | + | chr4_1:85855147-85855166 | Msa0580650:intron | 25.0% |
| ! | TAAGTGGAAATTGTAATACT+TGG | + | chr4_1:85855233-85855252 | Msa0580650:CDS | 25.0% |
| !! | TAGGAATATTGTTTCTTGTT+TGG | + | chr4_1:85855577-85855596 | Msa0580650:intron | 25.0% |
| !! | AGGAATATTGTTTCTTGTTT+GGG | + | chr4_1:85855578-85855597 | Msa0580650:intron | 25.0% |
| !!! | TTTTTTTTTGTCTCAGATTG+TGG | + | chr4_1:85855808-85855827 | Msa0580650:intron | 25.0% |
| !! | TATACTTTTACTCCATGTTT+AGG | + | chr4_1:85855927-85855946 | Msa0580650:intron | 25.0% |
| GATTCTTGAGAATCATTGTA+GGG | - | chr4_1:85852605-85852624 | None:intergenic | 30.0% | |
| TGATTCTTGAGAATCATTGT+AGG | - | chr4_1:85852606-85852625 | None:intergenic | 30.0% | |
| CGAAAAAAGCTTCAAAACAA+AGG | + | chr4_1:85852672-85852691 | Msa0580650:CDS | 30.0% | |
| ! | AAGTGTTGCAATTACTCTAA+AGG | + | chr4_1:85852708-85852727 | Msa0580650:CDS | 30.0% |
| AGTGTTGCAATTACTCTAAA+GGG | + | chr4_1:85852709-85852728 | Msa0580650:CDS | 30.0% | |
| !! | AAAGTTGGGAATTTTAGGAA+AGG | + | chr4_1:85852870-85852889 | Msa0580650:CDS | 30.0% |
| !! | AAAGGCTTGATTTTGAGAAA+TGG | + | chr4_1:85852888-85852907 | Msa0580650:CDS | 30.0% |
| !! | AAGGCTTGATTTTGAGAAAT+GGG | + | chr4_1:85852889-85852908 | Msa0580650:CDS | 30.0% |
| GTTTATACTGCTGTATTATG+TGG | + | chr4_1:85853020-85853039 | Msa0580650:CDS | 30.0% | |
| ATGTTGAGTTTGGTAAAGTT+AGG | + | chr4_1:85853147-85853166 | Msa0580650:CDS | 30.0% | |
| ! | TGCAGAAGAAAGATTTTACT+TGG | + | chr4_1:85853342-85853361 | Msa0580650:CDS | 30.0% |
| ! | GAAGAAAGATTTTACTTGGT+TGG | + | chr4_1:85853346-85853365 | Msa0580650:CDS | 30.0% |
| ! | AGAAAGATTTTACTTGGTTG+GGG | + | chr4_1:85853348-85853367 | Msa0580650:CDS | 30.0% |
| !! | ATTTTGGTCTAGAGTATTAC+CGG | + | chr4_1:85853739-85853758 | Msa0580650:CDS | 30.0% |
| AGATTTAAAAGGAAGGCTAA+TGG | + | chr4_1:85853776-85853795 | Msa0580650:CDS | 30.0% | |
| GATTTAAAAGGAAGGCTAAT+GGG | + | chr4_1:85853777-85853796 | Msa0580650:CDS | 30.0% | |
| ! | CACTAATATTTTCATCACCA+AGG | - | chr4_1:85854003-85854022 | None:intergenic | 30.0% |
| TGAAAATTTGCAATCTTGTG+AGG | + | chr4_1:85854156-85854175 | Msa0580650:CDS | 30.0% | |
| !! | TTTGGTAATGATAATTCGTC+TGG | + | chr4_1:85854256-85854275 | Msa0580650:CDS | 30.0% |
| !! | TTGGTAATGATAATTCGTCT+GGG | + | chr4_1:85854257-85854276 | Msa0580650:CDS | 30.0% |
| TTTCAGATGTAAAATCTGGT+TGG | - | chr4_1:85854285-85854304 | None:intergenic | 30.0% | |
| TGAAAATAAGTTTCCCATTG+AGG | - | chr4_1:85854331-85854350 | None:intergenic | 30.0% | |
| AACCTCGTTTATGAGAAATA+TGG | + | chr4_1:85854387-85854406 | Msa0580650:CDS | 30.0% | |
| TCAATATCTTGCTTTCTTTC+TGG | + | chr4_1:85854415-85854434 | Msa0580650:CDS | 30.0% | |
| ! | TCAGACTTCAACTTTTCAAT+GGG | - | chr4_1:85854442-85854461 | None:intergenic | 30.0% |
| ! | ATCAGACTTCAACTTTTCAA+TGG | - | chr4_1:85854443-85854462 | None:intergenic | 30.0% |
| TGAACAGAATCCAATATAAC+AGG | - | chr4_1:85854550-85854569 | None:intergenic | 30.0% | |
| ! | TGTTCATTTCAAAAGTGCAA+CGG | + | chr4_1:85854564-85854583 | Msa0580650:CDS | 30.0% |
| ! | ACAATAATTCTTCTAGAGGT+TGG | + | chr4_1:85854754-85854773 | Msa0580650:intron | 30.0% |
| ! | CAATAATTCTTCTAGAGGTT+GGG | + | chr4_1:85854755-85854774 | Msa0580650:intron | 30.0% |
| GAGATAAATACCTATAAGGA+TGG | - | chr4_1:85854804-85854823 | None:intergenic | 30.0% | |
| CATAAGAGTAGCTTGATTTA+GGG | - | chr4_1:85854918-85854937 | None:intergenic | 30.0% | |
| ACATAAGAGTAGCTTGATTT+AGG | - | chr4_1:85854919-85854938 | None:intergenic | 30.0% | |
| CATTCTTTACTTATACTTCC+AGG | + | chr4_1:85855146-85855165 | Msa0580650:intron | 30.0% | |
| ! | AATTGACAATCTTTTTGTCC+CGG | + | chr4_1:85855345-85855364 | Msa0580650:CDS | 30.0% |
| ATAATATTGAACAGCTTACC+GGG | - | chr4_1:85855366-85855385 | None:intergenic | 30.0% | |
| CATAATATTGAACAGCTTAC+CGG | - | chr4_1:85855367-85855386 | None:intergenic | 30.0% | |
| ATTCCAATTATGTGGTCTAA+AGG | + | chr4_1:85855486-85855505 | Msa0580650:CDS | 30.0% | |
| TTCCAATTATGTGGTCTAAA+GGG | + | chr4_1:85855487-85855506 | Msa0580650:CDS | 30.0% | |
| GACATAATATGTCAGAAACA+TGG | - | chr4_1:85855611-85855630 | None:intergenic | 30.0% | |
| AACAAAGTCTGAAAAAACGA+AGG | - | chr4_1:85855850-85855869 | None:intergenic | 30.0% | |
| !!! | CGTTTTTTCAGACTTTGTTA+CGG | + | chr4_1:85855851-85855870 | Msa0580650:intron | 30.0% |
| ! | TTGTTGCTCATTGTTGCTTA+TGG | - | chr4_1:85852469-85852488 | None:intergenic | 35.0% |
| ! | GTTACTGCTACATTGTTGTT+GGG | - | chr4_1:85852500-85852519 | None:intergenic | 35.0% |
| TGTTACTGCTACATTGTTGT+TGG | - | chr4_1:85852501-85852520 | None:intergenic | 35.0% | |
| ATTCAGAAGAATCATCGAAG+CGG | - | chr4_1:85852567-85852586 | None:intergenic | 35.0% | |
| ! | GAATCAGGAAGAGATTTTTC+TGG | + | chr4_1:85852843-85852862 | Msa0580650:CDS | 35.0% |
| !! | TGATTTTGAGAAATGGGTCA+AGG | + | chr4_1:85852805-85852824 | Msa0580650:CDS | 35.0% |
| TTGAGACCTTTGTTGAAAGA+AGG | + | chr4_1:85852975-85852994 | Msa0580650:CDS | 35.0% | |
| TGAGACCTTTGTTGAAAGAA+GGG | + | chr4_1:85852976-85852995 | Msa0580650:CDS | 35.0% | |
| AAAAGCCCTTCTTTCAACAA+AGG | - | chr4_1:85852984-85853003 | None:intergenic | 35.0% | |
| ! | AAGAAGGGCTTTTGTTGATA+AGG | + | chr4_1:85852991-85853010 | Msa0580650:CDS | 35.0% |
| !! | AGAAGGGCTTTTGTTGATAA+GGG | + | chr4_1:85852992-85853011 | Msa0580650:CDS | 35.0% |
| ATTATGTGGTGTGTGTATGT+TGG | + | chr4_1:85853034-85853053 | Msa0580650:CDS | 35.0% | |
| GTATGGTCAGAATAAAGCTA+AGG | + | chr4_1:85853061-85853080 | Msa0580650:CDS | 35.0% | |
| TTTGTTGCCTAGTGTTTGTT+TGG | + | chr4_1:85853100-85853119 | Msa0580650:CDS | 35.0% | |
| CTAATCACCAAACAAACACT+AGG | - | chr4_1:85853110-85853129 | None:intergenic | 35.0% | |
| ATTCAAAGGGATGTTGAGTT+TGG | + | chr4_1:85853137-85853156 | Msa0580650:CDS | 35.0% | |
| TTGAGTTTGGTAAAGTTAGG+AGG | + | chr4_1:85853150-85853169 | Msa0580650:CDS | 35.0% | |
| ! | ATAAGGAGGAGTTTTCATGT+GGG | + | chr4_1:85853219-85853238 | Msa0580650:CDS | 35.0% |
| !!! | AGGATATTTTCGAGTGAAGA+TGG | + | chr4_1:85853398-85853417 | Msa0580650:CDS | 35.0% |
| !!! | GGATATTTTCGAGTGAAGAT+GGG | + | chr4_1:85853399-85853418 | Msa0580650:CDS | 35.0% |
| GTGAAGATGGGATAGATTAT+CGG | + | chr4_1:85853411-85853430 | Msa0580650:CDS | 35.0% | |
| !! | TTGGTTACTTTGTTTCTGAG+AGG | + | chr4_1:85853519-85853538 | Msa0580650:CDS | 35.0% |
| !! | TTTGTTTCTGAGAGGAATTG+TGG | + | chr4_1:85853527-85853546 | Msa0580650:CDS | 35.0% |
| CTTAACTCAGTTGAACTACT+TGG | - | chr4_1:85853584-85853603 | None:intergenic | 35.0% | |
| TAGTTCAACTGAGTTAAGTG+AGG | + | chr4_1:85853586-85853605 | Msa0580650:CDS | 35.0% | |
| !! | GCAGATTTGGAAAAAGCATT+TGG | + | chr4_1:85853689-85853708 | Msa0580650:CDS | 35.0% |
| ! | GCATTTGGAGTGAAATTTCT+CGG | + | chr4_1:85853704-85853723 | Msa0580650:CDS | 35.0% |
| ! | CATTTGGAGTGAAATTTCTC+GGG | + | chr4_1:85853705-85853724 | Msa0580650:CDS | 35.0% |
| !! | TTTTGGTCTAGAGTATTACC+GGG | + | chr4_1:85853740-85853759 | Msa0580650:CDS | 35.0% |
| TACTTTCGTGATCAATCACA+AGG | + | chr4_1:85853872-85853891 | Msa0580650:CDS | 35.0% | |
| ACTTTCGTGATCAATCACAA+GGG | + | chr4_1:85853873-85853892 | Msa0580650:CDS | 35.0% | |
| AAACATTCAGAAGATGATGC+AGG | - | chr4_1:85853911-85853930 | None:intergenic | 35.0% | |
| AATGCAAAATCTGTTACCCT+TGG | + | chr4_1:85853983-85854002 | Msa0580650:CDS | 35.0% | |
| TTCTCTCCTGTCTGTAAATT+TGG | - | chr4_1:85854130-85854149 | None:intergenic | 35.0% | |
| GTTCTACTATTAGCATTAGC+AGG | - | chr4_1:85854193-85854212 | None:intergenic | 35.0% | |
| ! | TGGTAATGATAATTCGTCTG+GGG | + | chr4_1:85854258-85854277 | Msa0580650:CDS | 35.0% |
| TAAGTTTCCCATTGAGGATT+TGG | - | chr4_1:85854325-85854344 | None:intergenic | 35.0% | |
| TAGACCAAATTTCACAAGCA+AGG | - | chr4_1:85854368-85854387 | None:intergenic | 35.0% | |
| CTCCATATTTCTCATAAACG+AGG | - | chr4_1:85854392-85854411 | None:intergenic | 35.0% | |
| CTCGTTTATGAGAAATATGG+AGG | + | chr4_1:85854390-85854409 | Msa0580650:CDS | 35.0% | |
| ! | CAGACTTCAACTTTTCAATG+GGG | - | chr4_1:85854441-85854460 | None:intergenic | 35.0% |
| TAAGACGCTTCCTGTTATAT+TGG | + | chr4_1:85854537-85854556 | Msa0580650:CDS | 35.0% | |
| CTTCTTGAAGTGTATAGCAA+TGG | + | chr4_1:85854685-85854704 | Msa0580650:intron | 35.0% | |
| ATGTCATTAGCCATCCTTAT+AGG | + | chr4_1:85854791-85854810 | Msa0580650:intron | 35.0% | |
| GTGGAAATTGTAATACTTGG+AGG | + | chr4_1:85855236-85855255 | Msa0580650:CDS | 35.0% | |
| TCAGATATTCTATCCGAAGA+CGG | + | chr4_1:85855259-85855278 | Msa0580650:CDS | 35.0% | |
| AACAGCAAAGCAGGAAATAT+AGG | - | chr4_1:85855395-85855414 | None:intergenic | 35.0% | |
| !! | CTTTGCTGTTTAAGTTCGAT+AGG | + | chr4_1:85855405-85855424 | Msa0580650:intron | 35.0% |
| TCCTAGAGATTCCAATTATG+TGG | + | chr4_1:85855478-85855497 | Msa0580650:CDS | 35.0% | |
| ACCACATAATTGGAATCTCT+AGG | - | chr4_1:85855482-85855501 | None:intergenic | 35.0% | |
| AATTATGTGGTCTAAAGGGA+GGG | + | chr4_1:85855491-85855510 | Msa0580650:CDS | 35.0% | |
| AGACTTTGTTACGGTTATGT+TGG | + | chr4_1:85855860-85855879 | Msa0580650:intron | 35.0% | |
| ! | GAGACTTTTCCAAATTTGCA+TGG | + | chr4_1:85855973-85855992 | Msa0580650:CDS | 35.0% |
| AGACATACAGAAAAACCTGA+CGG | - | chr4_1:85856042-85856061 | None:intergenic | 35.0% | |
| ! | AGGAAATGAAGTGTCAAATG+AGG | - | chr4_1:85856076-85856095 | None:intergenic | 35.0% |
| ! | CTCATTGTTGCTTATGGCTA+TGG | - | chr4_1:85852463-85852482 | None:intergenic | 40.0% |
| TTCAGAAGAATCATCGAAGC+GGG | - | chr4_1:85852566-85852585 | None:intergenic | 40.0% | |
| GAGAATCATTGTAGGGTCTA+GGG | - | chr4_1:85852598-85852617 | None:intergenic | 40.0% | |
| TGAGAATCATTGTAGGGTCT+AGG | - | chr4_1:85852599-85852618 | None:intergenic | 40.0% | |
| GCTGAAATTGAAAAGGGTGA+AGG | - | chr4_1:85852653-85852672 | None:intergenic | 40.0% | |
| !! | TTACTCTAAAGGGTGTCGTT+TGG | + | chr4_1:85852719-85852738 | Msa0580650:CDS | 40.0% |
| GTGTGTATGTTGGTATGGTA+TGG | + | chr4_1:85853044-85853063 | Msa0580650:CDS | 40.0% | |
| TTCACCGTTGAGTATTACGT+TGG | + | chr4_1:85853175-85853194 | Msa0580650:CDS | 40.0% | |
| CATGAAAACTCCTCCTTATG+CGG | - | chr4_1:85853218-85853237 | None:intergenic | 40.0% | |
| ! | CATAAGGAGGAGTTTTCATG+TGG | + | chr4_1:85853218-85853237 | Msa0580650:CDS | 40.0% |
| ! | TAAGGAGGAGTTTTCATGTG+GGG | + | chr4_1:85853220-85853239 | Msa0580650:CDS | 40.0% |
| AGGAATTGTGGTGTATCTGA+AGG | + | chr4_1:85853539-85853558 | Msa0580650:CDS | 40.0% | |
| !! | GAAGCATGATCATCGATTCA+TGG | + | chr4_1:85853637-85853656 | Msa0580650:CDS | 40.0% |
| ! | TTTGGTCTAGAGTATTACCG+GGG | + | chr4_1:85853741-85853760 | Msa0580650:CDS | 40.0% |
| !! | AATCTGTTTTTCCTATGCCC+CGG | - | chr4_1:85853761-85853780 | None:intergenic | 40.0% |
| AATGTTTGAACGTAGCGCAT+CGG | + | chr4_1:85853838-85853857 | Msa0580650:CDS | 40.0% | |
| ATCAATCACAAGGGAAGGAT+GGG | + | chr4_1:85853882-85853901 | Msa0580650:CDS | 40.0% | |
| ! | CTGTCTGTAAATTTGGCTCA+CGG | - | chr4_1:85854123-85854142 | None:intergenic | 40.0% |
| AAATCATCGTCTTCAACAGG+AGG | - | chr4_1:85854238-85854257 | None:intergenic | 40.0% | |
| CCAAAATCATCGTCTTCAAC+AGG | - | chr4_1:85854241-85854260 | None:intergenic | 40.0% | |
| ! | CCTGTTGAAGACGATGATTT+TGG | + | chr4_1:85854238-85854257 | Msa0580650:CDS | 40.0% |
| GGTAATGATAATTCGTCTGG+GGG | + | chr4_1:85854259-85854278 | Msa0580650:CDS | 40.0% | |
| TTCACAAGCAAGGACTCAAA+TGG | - | chr4_1:85854358-85854377 | None:intergenic | 40.0% | |
| GAGTCCTTGCTTGTGAAATT+TGG | + | chr4_1:85854361-85854380 | Msa0580650:CDS | 40.0% | |
| ACAAAATCTAGCCCATCAAC+AGG | - | chr4_1:85854499-85854518 | None:intergenic | 40.0% | |
| ! | CTAGATTTTGTGCAGTCTGA+AGG | + | chr4_1:85854508-85854527 | Msa0580650:CDS | 40.0% |
| ! | ATGCTACTTGCATATGGTGA+CGG | + | chr4_1:85854589-85854608 | Msa0580650:CDS | 40.0% |
| TAATCTGTAATCGCTCAGAG+AGG | + | chr4_1:85854649-85854668 | Msa0580650:intron | 40.0% | |
| AAGTGTATAGCAATGGCAGT+TGG | + | chr4_1:85854692-85854711 | Msa0580650:intron | 40.0% | |
| GTACTTAGTCATCTTATGCC+TGG | - | chr4_1:85854896-85854915 | None:intergenic | 40.0% | |
| TACTTATACTTCCAGGGAGA+TGG | + | chr4_1:85855153-85855172 | Msa0580650:intron | 40.0% | |
| CGCATACATGTGCATTTAAG+TGG | + | chr4_1:85855217-85855236 | Msa0580650:CDS | 40.0% | |
| CAGATATTCTATCCGAAGAC+GGG | + | chr4_1:85855260-85855279 | Msa0580650:CDS | 40.0% | |
| AGATATTCTATCCGAAGACG+GGG | + | chr4_1:85855261-85855280 | Msa0580650:CDS | 40.0% | |
| TCGAACTTAAACAGCAAAGC+AGG | - | chr4_1:85855404-85855423 | None:intergenic | 40.0% | |
| ATGATGTGCAGCTGTTTGAA+CGG | + | chr4_1:85855454-85855473 | Msa0580650:intron | 40.0% | |
| CTCCCTTTAGACCACATAAT+TGG | - | chr4_1:85855492-85855511 | None:intergenic | 40.0% | |
| CAATTATGTGGTCTAAAGGG+AGG | + | chr4_1:85855490-85855509 | Msa0580650:CDS | 40.0% | |
| TCAAGCTGTCCATGCAAATT+TGG | - | chr4_1:85855985-85856004 | None:intergenic | 40.0% | |
| ! | GTGTCAAATGAGGAGAGTAT+GGG | - | chr4_1:85856066-85856085 | None:intergenic | 40.0% |
| AGTGTCAAATGAGGAGAGTA+TGG | - | chr4_1:85856067-85856086 | None:intergenic | 40.0% | |
| GTGGTGTGTGTATGTTGGTA+TGG | + | chr4_1:85853039-85853058 | Msa0580650:CDS | 45.0% | |
| ACCGTTGAGTATTACGTTGG+AGG | + | chr4_1:85853178-85853197 | Msa0580650:CDS | 45.0% | |
| GCCTCCAACGTAATACTCAA+CGG | - | chr4_1:85853182-85853201 | None:intergenic | 45.0% | |
| ! | TACGACCTTTTGCGAGTTTG+AGG | + | chr4_1:85853267-85853286 | Msa0580650:CDS | 45.0% |
| ! | ACCTTTTGCGAGTTTGAGGA+GGG | + | chr4_1:85853271-85853290 | Msa0580650:CDS | 45.0% |
| TTCTGCACAACCAACACACT+CGG | - | chr4_1:85853329-85853348 | None:intergenic | 45.0% | |
| TTGGTTGGGGATACCGTTTA+CGG | + | chr4_1:85853361-85853380 | Msa0580650:CDS | 45.0% | |
| TAGATTATCGGACGAGAACG+AGG | + | chr4_1:85853423-85853442 | Msa0580650:CDS | 45.0% | |
| GGAAAGAGAAAGGGATGAAG+CGG | + | chr4_1:85853478-85853497 | Msa0580650:CDS | 45.0% | |
| TGTGGTGTATCTGAAGGTGA+TGG | + | chr4_1:85853545-85853564 | Msa0580650:CDS | 45.0% | |
| ! | ATCTGAAGGTGATGGTGCAA+AGG | + | chr4_1:85853553-85853572 | Msa0580650:CDS | 45.0% |
| !! | GATCATCGATTCATGGACAC+AGG | + | chr4_1:85853644-85853663 | Msa0580650:CDS | 45.0% |
| GAGTGAAATTTCTCGGGTCA+GGG | + | chr4_1:85853711-85853730 | Msa0580650:CDS | 45.0% | |
| GGGAGTAAGATCTATGCATC+TGG | + | chr4_1:85853797-85853816 | Msa0580650:CDS | 45.0% | |
| TCGTGATCAATCACAAGGGA+AGG | + | chr4_1:85853877-85853896 | Msa0580650:CDS | 45.0% | |
| GATCAATCACAAGGGAAGGA+TGG | + | chr4_1:85853881-85853900 | Msa0580650:CDS | 45.0% | |
| TCAATCACAAGGGAAGGATG+GGG | + | chr4_1:85853883-85853902 | Msa0580650:CDS | 45.0% | |
| GAATCATGACGATGTGCATG+CGG | + | chr4_1:85853940-85853959 | Msa0580650:CDS | 45.0% | |
| GATCCAGAGATCTGGGAATT+TGG | + | chr4_1:85854044-85854063 | Msa0580650:CDS | 45.0% | |
| AACATTTCCATCTACCGAGG+GGG | - | chr4_1:85854071-85854090 | None:intergenic | 45.0% | |
| CAACATTTCCATCTACCGAG+GGG | - | chr4_1:85854072-85854091 | None:intergenic | 45.0% | |
| CCAACATTTCCATCTACCGA+GGG | - | chr4_1:85854073-85854092 | None:intergenic | 45.0% | |
| ACCAACATTTCCATCTACCG+AGG | - | chr4_1:85854074-85854093 | None:intergenic | 45.0% | |
| TCGGTAGATGGAAATGTTGG+TGG | + | chr4_1:85854073-85854092 | Msa0580650:CDS | 45.0% | |
| CGTGAGCCAAATTTACAGAC+AGG | + | chr4_1:85854121-85854140 | Msa0580650:CDS | 45.0% | |
| TGCCAAGCCAAATCCTCAAT+GGG | + | chr4_1:85854315-85854334 | Msa0580650:CDS | 45.0% | |
| TTCCCATTGAGGATTTGGCT+TGG | - | chr4_1:85854320-85854339 | None:intergenic | 45.0% | |
| ATTGTTGCAGAGCCTGTTGA+TGG | + | chr4_1:85854484-85854503 | Msa0580650:CDS | 45.0% | |
| TTGTTGCAGAGCCTGTTGAT+GGG | + | chr4_1:85854485-85854504 | Msa0580650:CDS | 45.0% | |
| ! | ACGGTGATGCTACTTGCATA+TGG | + | chr4_1:85854583-85854602 | Msa0580650:CDS | 45.0% |
| ! | TGCTACTTGCATATGGTGAC+GGG | + | chr4_1:85854590-85854609 | Msa0580650:CDS | 45.0% |
| TAAGTATCCCTCTGAACTCC+AGG | + | chr4_1:85854875-85854894 | Msa0580650:intron | 45.0% | |
| TCTTATGCCTGGAGTTCAGA+GGG | - | chr4_1:85854885-85854904 | None:intergenic | 45.0% | |
| ATCTTATGCCTGGAGTTCAG+AGG | - | chr4_1:85854886-85854905 | None:intergenic | 45.0% | |
| ATTGACATTCTCCATCTCCC+TGG | - | chr4_1:85855167-85855186 | None:intergenic | 45.0% | |
| AGGGAGATGGAGAATGTCAA+TGG | + | chr4_1:85855166-85855185 | Msa0580650:intron | 45.0% | |
| GGGAGATGGAGAATGTCAAT+GGG | + | chr4_1:85855167-85855186 | Msa0580650:intron | 45.0% | |
| GCACATGTATGCGACTATAG+TGG | - | chr4_1:85855210-85855229 | None:intergenic | 45.0% | |
| GATATTCTATCCGAAGACGG+GGG | + | chr4_1:85855262-85855281 | Msa0580650:CDS | 45.0% | |
| TGCACAGGTGAACCTAAACA+TGG | - | chr4_1:85855942-85855961 | None:intergenic | 45.0% | |
| GTTCACCTGTGCATGTCTAA+GGG | + | chr4_1:85855949-85855968 | Msa0580650:CDS | 45.0% | |
| ATGGACAGCTTGATGTGACA+GGG | + | chr4_1:85855992-85856011 | Msa0580650:CDS | 45.0% | |
| ! | CTGACGGAGCATCTAATAGT+TGG | - | chr4_1:85856026-85856045 | None:intergenic | 45.0% |
| CAACTATTAGATGCTCCGTC+AGG | + | chr4_1:85856024-85856043 | Msa0580650:CDS | 45.0% | |
| !! | TATTAAATCTTTATATTAAA+GGG | - | chr4_1:85854841-85854860 | None:intergenic | 5.0% |
| !! | ATATTAAATCTTTATATTAA+AGG | - | chr4_1:85854842-85854861 | None:intergenic | 5.0% |
| ! | ACGTTGGAGGCATGTTCGAT+TGG | + | chr4_1:85853191-85853210 | Msa0580650:CDS | 50.0% |
| ! | CGTTGGAGGCATGTTCGATT+GGG | + | chr4_1:85853192-85853211 | Msa0580650:CDS | 50.0% |
| ATGTTCGATTGGGCCGCATA+AGG | + | chr4_1:85853202-85853221 | Msa0580650:CDS | 50.0% | |
| AGGTTCCGACGGTGAAGATT+AGG | + | chr4_1:85853243-85853262 | Msa0580650:CDS | 50.0% | |
| GGTTCCGACGGTGAAGATTA+GGG | + | chr4_1:85853244-85853263 | Msa0580650:CDS | 50.0% | |
| CGTACCCTAATCTTCACCGT+CGG | - | chr4_1:85853251-85853270 | None:intergenic | 50.0% | |
| ! | GACCTTTTGCGAGTTTGAGG+AGG | + | chr4_1:85853270-85853289 | Msa0580650:CDS | 50.0% |
| ! | CCTTTTGCGAGTTTGAGGAG+GGG | + | chr4_1:85853272-85853291 | Msa0580650:CDS | 50.0% |
| ! | CTTTTGCGAGTTTGAGGAGG+GGG | + | chr4_1:85853273-85853292 | Msa0580650:CDS | 50.0% |
| TTGGGGATACCGTTTACGGA+AGG | + | chr4_1:85853365-85853384 | Msa0580650:CDS | 50.0% | |
| TGGGGATACCGTTTACGGAA+GGG | + | chr4_1:85853366-85853385 | Msa0580650:CDS | 50.0% | |
| ATTATCGGACGAGAACGAGG+AGG | + | chr4_1:85853426-85853445 | Msa0580650:CDS | 50.0% | |
| TGCGAGGTGGGAAAGAGAAA+GGG | + | chr4_1:85853469-85853488 | Msa0580650:CDS | 50.0% | |
| AGAAAGGGATGAAGCGGCTA+GGG | + | chr4_1:85853484-85853503 | Msa0580650:CDS | 50.0% | |
| CCACCATCCACGCAGAAAAA+CGG | - | chr4_1:85853617-85853636 | None:intergenic | 50.0% | |
| ! | CGTTTTTCTGCGTGGATGGT+GGG | + | chr4_1:85853615-85853634 | Msa0580650:CDS | 50.0% |
| CGATACGAAGCACGCAGATT+TGG | + | chr4_1:85853676-85853695 | Msa0580650:CDS | 50.0% | |
| GGAGTGAAATTTCTCGGGTC+AGG | + | chr4_1:85853710-85853729 | Msa0580650:CDS | 50.0% | |
| ! | TCGGGTCAGGGTTTCGATTT+TGG | + | chr4_1:85853723-85853742 | Msa0580650:CDS | 50.0% |
| ! | CTAGAGTATTACCGGGGCAT+AGG | + | chr4_1:85853747-85853766 | Msa0580650:CDS | 50.0% |
| GGACCAAATTCCCAGATCTC+TGG | - | chr4_1:85854050-85854069 | None:intergenic | 50.0% | |
| CCCTCGGTAGATGGAAATGT+TGG | + | chr4_1:85854070-85854089 | Msa0580650:CDS | 50.0% | |
| GTGCCAAGCCAAATCCTCAA+TGG | + | chr4_1:85854314-85854333 | Msa0580650:CDS | 50.0% | |
| GTCTGATGCGAGTGTGAAAG+TGG | + | chr4_1:85854456-85854475 | Msa0580650:CDS | 50.0% | |
| TGATGCGAGTGTGAAAGTGG+AGG | + | chr4_1:85854459-85854478 | Msa0580650:CDS | 50.0% | |
| ! | GCTACTTGCATATGGTGACG+GGG | + | chr4_1:85854591-85854610 | Msa0580650:CDS | 50.0% |
| !! | CATATGGTGACGGGGAAGTT+AGG | + | chr4_1:85854599-85854618 | Msa0580650:CDS | 50.0% |
| ATCGCTCAGAGAGGATCTGT+CGG | + | chr4_1:85854658-85854677 | Msa0580650:intron | 50.0% | |
| GGTTCACCTGTGCATGTCTA+AGG | + | chr4_1:85855948-85855967 | Msa0580650:intron | 50.0% | |
| TCTCTCCCTTAGACATGCAC+AGG | - | chr4_1:85855957-85855976 | None:intergenic | 50.0% | |
| CATGGACAGCTTGATGTGAC+AGG | + | chr4_1:85855991-85856010 | Msa0580650:CDS | 50.0% | |
| ACAGCTTGATGTGACAGGGT+TGG | + | chr4_1:85855996-85856015 | Msa0580650:CDS | 50.0% | |
| TTCGATTGGGCCGCATAAGG+AGG | + | chr4_1:85853205-85853224 | Msa0580650:CDS | 55.0% | |
| ! | GGAGGAGTTTTCATGTGGGG+AGG | + | chr4_1:85853223-85853242 | Msa0580650:CDS | 55.0% |
| TTCATGTGGGGAGGTTCCGA+CGG | + | chr4_1:85853232-85853251 | Msa0580650:CDS | 55.0% | |
| CCCCTCCTCAAACTCGCAAA+AGG | - | chr4_1:85853275-85853294 | None:intergenic | 55.0% | |
| GGGGAAGGTGGTTGTTGATG+CGG | + | chr4_1:85853292-85853311 | Msa0580650:CDS | 55.0% | |
| TTTGACGCAGCCGAGTGTGT+TGG | + | chr4_1:85853316-85853335 | Msa0580650:CDS | 55.0% | |
| GGGGATACCGTTTACGGAAG+GGG | + | chr4_1:85853367-85853386 | Msa0580650:CDS | 55.0% | |
| GGGATACCGTTTACGGAAGG+GGG | + | chr4_1:85853368-85853387 | Msa0580650:CDS | 55.0% | |
| GGATACCGTTTACGGAAGGG+GGG | + | chr4_1:85853369-85853388 | Msa0580650:CDS | 55.0% | |
| TCTCTCCCCCCTTCCGTAAA+CGG | - | chr4_1:85853377-85853396 | None:intergenic | 55.0% | |
| GAGAACGAGGAGGCTTGCAA+GGG | + | chr4_1:85853436-85853455 | Msa0580650:CDS | 55.0% | |
| GTGCGAGGTGGGAAAGAGAA+AGG | + | chr4_1:85853468-85853487 | Msa0580650:CDS | 55.0% | |
| GAGAAAGGGATGAAGCGGCT+AGG | + | chr4_1:85853483-85853502 | Msa0580650:CDS | 55.0% | |
| ATCCACGCAGAAAAACGGCG+TGG | - | chr4_1:85853612-85853631 | None:intergenic | 55.0% | |
| !!! | ACGCCGTTTTTCTGCGTGGA+TGG | + | chr4_1:85853611-85853630 | Msa0580650:CDS | 55.0% |
| !! | CCGTTTTTCTGCGTGGATGG+TGG | + | chr4_1:85853614-85853633 | Msa0580650:CDS | 55.0% |
| TCATGACGATGTGCATGCGG+CGG | + | chr4_1:85853943-85853962 | Msa0580650:CDS | 55.0% | |
| TGCTGCACGATCCAGAGATC+TGG | + | chr4_1:85854036-85854055 | Msa0580650:CDS | 55.0% | |
| GCTGCACGATCCAGAGATCT+GGG | + | chr4_1:85854037-85854056 | Msa0580650:CDS | 55.0% | |
| TCTGGGAATTTGGTCCCCCT+CGG | + | chr4_1:85854054-85854073 | Msa0580650:CDS | 55.0% | |
| ATTTGGTCCCCCTCGGTAGA+TGG | + | chr4_1:85854061-85854080 | Msa0580650:CDS | 55.0% | |
| !! | GGTGACGGGGAAGTTAGGTA+AGG | + | chr4_1:85854604-85854623 | Msa0580650:intron | 55.0% |
| TGGTCTAAAGGGAGGGCTAG+TGG | + | chr4_1:85855498-85855517 | Msa0580650:CDS | 55.0% | |
| TGCGAGTTTGAGGAGGGGGA+AGG | + | chr4_1:85853277-85853296 | Msa0580650:CDS | 60.0% | |
| GAGTTTGAGGAGGGGGAAGG+TGG | + | chr4_1:85853280-85853299 | Msa0580650:CDS | 60.0% | |
| TTACGGAAGGGGGGAGAGAG+AGG | + | chr4_1:85853378-85853397 | Msa0580650:CDS | 60.0% | |
| CGAGAACGAGGAGGCTTGCA+AGG | + | chr4_1:85853435-85853454 | Msa0580650:CDS | 60.0% | |
| AACGAGGAGGCTTGCAAGGG+AGG | + | chr4_1:85853439-85853458 | Msa0580650:CDS | 60.0% | |
| AGGAGGCTTGCAAGGGAGGA+AGG | + | chr4_1:85853443-85853462 | Msa0580650:CDS | 60.0% | |
| AGGCTTGCAAGGGAGGAAGG+TGG | + | chr4_1:85853446-85853465 | Msa0580650:CDS | 60.0% | |
| AAGGGATGAAGCGGCTAGGG+AGG | + | chr4_1:85853487-85853506 | Msa0580650:CDS | 60.0% | |
| TGTGCATGCGGCGGTAAGTG+AGG | + | chr4_1:85853952-85853971 | Msa0580650:CDS | 60.0% | |
| GCGGCGGTAAGTGAGGTTGA+TGG | + | chr4_1:85853959-85853978 | Msa0580650:CDS | 60.0% | |
| TTCTATCCGAAGACGGGGGC+TGG | + | chr4_1:85855266-85855285 | Msa0580650:CDS | 60.0% | |
| AGACAACCAGCCCCCGTCTT+CGG | - | chr4_1:85855275-85855294 | None:intergenic | 60.0% | |
| ! | TAAAGGGAGGGCTAGTGGCG+AGG | + | chr4_1:85855503-85855522 | Msa0580650:CDS | 60.0% |
| CAAGGGAGGAAGGTGGTGCG+AGG | + | chr4_1:85853453-85853472 | Msa0580650:CDS | 65.0% | |
| GGAGGAAGGTGGTGCGAGGT+GGG | + | chr4_1:85853457-85853476 | Msa0580650:CDS | 65.0% | |
| GCTAGGGAGGCTGCTGAGGT+TGG | + | chr4_1:85853500-85853519 | Msa0580650:CDS | 65.0% | |
| !!! | GGCCACGCCGTTTTTCTGCG+TGG | + | chr4_1:85853607-85853626 | Msa0580650:CDS | 65.0% |
| GGGAGGAAGGTGGTGCGAGG+TGG | + | chr4_1:85853456-85853475 | Msa0580650:CDS | 70.0% | |
| AGCGGCTAGGGAGGCTGCTG+AGG | + | chr4_1:85853496-85853515 | Msa0580650:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 85852426 | 85856104 | 85852426 | ID=Msa0580650;Name=Msa0580650 |
| chr4_1 | mRNA | 85852426 | 85856104 | 85852426 | ID=Msa0580650-mRNA-1;Parent=Msa0580650;Name=Msa0580650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=183|1|0.75|1|1|1|4|0|808 |
| chr4_1 | exon | 85852426 | 85854620 | 85852426 | ID=Msa0580650-mRNA-1:exon:31580;Parent=Msa0580650-mRNA-1 |
| chr4_1 | exon | 85855168 | 85855366 | 85855168 | ID=Msa0580650-mRNA-1:exon:31581;Parent=Msa0580650-mRNA-1 |
| chr4_1 | exon | 85855465 | 85855524 | 85855465 | ID=Msa0580650-mRNA-1:exon:31582;Parent=Msa0580650-mRNA-1 |
| chr4_1 | exon | 85855949 | 85856104 | 85855949 | ID=Msa0580650-mRNA-1:exon:31583;Parent=Msa0580650-mRNA-1 |
| chr4_1 | five_prime_UTR | 85852426 | 85852608 | 85852426 | ID=Msa0580650-mRNA-1:five_prime_utr;Parent=Msa0580650-mRNA-1 |
| chr4_1 | CDS | 85852609 | 85854620 | 85852609 | ID=Msa0580650-mRNA-1:cds;Parent=Msa0580650-mRNA-1 |
| chr4_1 | CDS | 85855168 | 85855366 | 85855168 | ID=Msa0580650-mRNA-1:cds;Parent=Msa0580650-mRNA-1 |
| chr4_1 | CDS | 85855465 | 85855524 | 85855465 | ID=Msa0580650-mRNA-1:cds;Parent=Msa0580650-mRNA-1 |
| chr4_1 | CDS | 85855949 | 85856104 | 85855949 | ID=Msa0580650-mRNA-1:cds;Parent=Msa0580650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
