Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438310 | XP_013465779.1 | 96.149 | 779 | 30 | 0 | 1 | 779 | 1 | 779 | 0.0 | 1553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438310 | sp|F4ISL7|TI236_ARATH | 48.396 | 717 | 317 | 13 | 84 | 779 | 57 | 741 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438310 | A0A072VNV3 | 96.149 | 779 | 30 | 0 | 1 | 779 | 1 | 779 | 0.0 | 1553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1367390 | Msa1438310 | -0.845706 | 3.436147e-59 | -8.615850e-47 |
| Msa1422750 | Msa1438310 | 0.805088 | 1.580586e-49 | -8.615850e-47 |
| Msa0662850 | Msa1438310 | 0.821125 | 4.767200e-53 | -8.615850e-47 |
| Msa0782330 | Msa1438310 | 0.809386 | 1.941793e-50 | -8.615850e-47 |
| Msa0829190 | Msa1438310 | 0.813308 | 2.732976e-51 | -8.615850e-47 |
| Msa1248400 | Msa1438310 | 0.805501 | 1.294746e-49 | -8.615850e-47 |
| Msa1310260 | Msa1438310 | 0.855960 | 4.441128e-62 | -8.615850e-47 |
| Msa1327820 | Msa1438310 | 0.802738 | 4.865142e-49 | -8.615850e-47 |
| Msa0380920 | Msa1438310 | 0.801762 | 7.725348e-49 | -8.615850e-47 |
| Msa0398060 | Msa1438310 | 0.800492 | 1.405383e-48 | -8.615850e-47 |
| Msa0432480 | Msa1438310 | 0.815029 | 1.139361e-51 | -8.615850e-47 |
| Msa0993530 | Msa1438310 | 0.802560 | 5.295490e-49 | -8.615850e-47 |
| Msa1020710 | Msa1438310 | 0.802901 | 4.503371e-49 | -8.615850e-47 |
| Msa0288320 | Msa1438310 | 0.817662 | 2.936092e-52 | -8.615850e-47 |
| Msa1221900 | Msa1438310 | 0.808822 | 2.563744e-50 | -8.615850e-47 |
| Msa0509500 | Msa1438310 | 0.812884 | 3.386748e-51 | -8.615850e-47 |
| Msa0524200 | Msa1438310 | -0.840351 | 9.163441e-58 | -8.615850e-47 |
| Msa0530210 | Msa1438310 | 0.819728 | 9.972958e-53 | -8.615850e-47 |
| Msa0580650 | Msa1438310 | 0.976135 | 3.001061e-141 | -8.615850e-47 |
| Msa0908170 | Msa1438310 | 0.815336 | 9.741789e-52 | -8.615850e-47 |
| Msa0978000 | Msa1438310 | 0.812399 | 4.323946e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438310 | MtrunA17_Chr1g0148561 | 96.149 | 779 | 30 | 0 | 1 | 779 | 1 | 779 | 0.0 | 1553 |
| Msa1438310 | MtrunA17_Chr3g0138521 | 57.772 | 386 | 152 | 3 | 84 | 469 | 60 | 434 | 3.91e-132 | 433 |
| Msa1438310 | MtrunA17_Chr3g0138521 | 73.548 | 155 | 41 | 0 | 625 | 779 | 436 | 590 | 5.11e-72 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438310 | AT2G25660.3 | 48.396 | 717 | 317 | 13 | 84 | 779 | 57 | 741 | 0.0 | 606 |
| Msa1438310 | AT2G25660.4 | 48.396 | 717 | 317 | 13 | 84 | 779 | 57 | 741 | 0.0 | 606 |
| Msa1438310 | AT2G25660.2 | 48.396 | 717 | 317 | 13 | 84 | 779 | 57 | 741 | 0.0 | 606 |
| Msa1438310 | AT2G25660.1 | 48.396 | 717 | 317 | 13 | 84 | 779 | 57 | 741 | 0.0 | 606 |
Find 189 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATCTTGCTTTCTTTC+TGG | 0.078571 | tig0028540:-2376 | Msa1438310:CDS |
| TTCTCTCCTGTCTGTAAATT+TGG | 0.128707 | tig0028540:+2664 | None:intergenic |
| TCGGGTCAGGGTTTCGATTT+TGG | 0.188953 | tig0028540:-3068 | Msa1438310:CDS |
| TTGACATTATTGAACAAAAT+TGG | 0.194826 | tig0028540:-1481 | Msa1438310:CDS |
| TAAGTTTCCCATTGAGGATT+TGG | 0.229207 | tig0028540:+2469 | None:intergenic |
| GGTTCACCTGTGCATGTCTA+AGG | 0.234989 | tig0028540:-839 | Msa1438310:CDS |
| CTCCCTTTAGACCACATAAT+TGG | 0.239917 | tig0028540:+1300 | None:intergenic |
| TCAAGCTGTCCATGCAAATT+TGG | 0.240585 | tig0028540:+805 | None:intergenic |
| TTGTTGCTCATTGTTGCTTA+TGG | 0.246466 | tig0028540:+4325 | None:intergenic |
| CGATACGAAGCACGCAGATT+TGG | 0.268868 | tig0028540:-3115 | Msa1438310:CDS |
| TAAGACGCTTCCTGTTATAT+TGG | 0.276182 | tig0028540:-2254 | Msa1438310:CDS |
| CCTGTTGAAGACGATGATTT+TGG | 0.304684 | tig0028540:-2553 | Msa1438310:CDS |
| AAATTCTCACTAACAAAATA+TGG | 0.315613 | tig0028540:+3849 | None:intergenic |
| GAGTCCTTGCTTGTGAAATT+TGG | 0.322268 | tig0028540:-2430 | Msa1438310:CDS |
| GATCCAGAGATCTGGGAATT+TGG | 0.335232 | tig0028540:-2747 | Msa1438310:CDS |
| ATTCAAAGGGATGTTGAGTT+TGG | 0.335585 | tig0028540:-3654 | Msa1438310:CDS |
| CTCATTGTTGCTTATGGCTA+TGG | 0.336427 | tig0028540:+4331 | None:intergenic |
| AGGTTCCGACGGTGAAGATT+AGG | 0.350794 | tig0028540:-3548 | Msa1438310:CDS |
| TTTGGTAATGATAATTCGTC+TGG | 0.352815 | tig0028540:-2535 | Msa1438310:CDS |
| TTAAAATGTGCTAATGAATC+AGG | 0.358797 | tig0028540:-3963 | Msa1438310:CDS |
| ATGTTGAGTTTGGTAAAGTT+AGG | 0.373114 | tig0028540:-3644 | Msa1438310:CDS |
| GGAGTGAAATTTCTCGGGTC+AGG | 0.375352 | tig0028540:-3081 | Msa1438310:CDS |
| CATATGGTGACGGGGAAGTT+AGG | 0.388300 | tig0028540:-2192 | Msa1438310:intron |
| TTTGTTGCCTAGTGTTTGTT+TGG | 0.389415 | tig0028540:-3691 | Msa1438310:CDS |
| TGCTGCACGATCCAGAGATC+TGG | 0.390339 | tig0028540:-2755 | Msa1438310:CDS |
| CTTAACTCAGTTGAACTACT+TGG | 0.395955 | tig0028540:+3210 | None:intergenic |
| TGAACAGAATCCAATATAAC+AGG | 0.397359 | tig0028540:+2244 | None:intergenic |
| TGTTACTGCTACATTGTTGT+TGG | 0.398345 | tig0028540:+4293 | None:intergenic |
| AACCTCGTTTATGAGAAATA+TGG | 0.414019 | tig0028540:-2404 | Msa1438310:CDS |
| GGGGATACCGTTTACGGAAG+GGG | 0.418603 | tig0028540:-3424 | Msa1438310:CDS |
| GGGATACCGTTTACGGAAGG+GGG | 0.419771 | tig0028540:-3423 | Msa1438310:CDS |
| AACAGATAAAATTGAAGTCT+TGG | 0.424949 | tig0028540:-2581 | Msa1438310:CDS |
| GCATTTGGAGTGAAATTTCT+CGG | 0.427101 | tig0028540:-3087 | Msa1438310:CDS |
| CGCATACATGTGCATTTAAG+TGG | 0.428050 | tig0028540:-1572 | Msa1438310:CDS |
| TGAAAATAAGTTTCCCATTG+AGG | 0.429042 | tig0028540:+2463 | None:intergenic |
| GTGCGAGGTGGGAAAGAGAA+AGG | 0.430072 | tig0028540:-3323 | Msa1438310:CDS |
| TGAGAATCATTGTAGGGTCT+AGG | 0.430577 | tig0028540:+4195 | None:intergenic |
| GTTTATACTGCTGTATTATG+TGG | 0.430963 | tig0028540:-3771 | Msa1438310:CDS |
| TTGAGACCTTTGTTGAAAGA+AGG | 0.432789 | tig0028540:-3816 | Msa1438310:CDS |
| GTTACTGCTACATTGTTGTT+GGG | 0.435811 | tig0028540:+4294 | None:intergenic |
| ATTGTTGCAGAGCCTGTTGA+TGG | 0.436486 | tig0028540:-2307 | Msa1438310:CDS |
| CCAAAATCATCGTCTTCAAC+AGG | 0.441197 | tig0028540:+2553 | None:intergenic |
| CGTTGGAGGCATGTTCGATT+GGG | 0.442328 | tig0028540:-3599 | Msa1438310:CDS |
| AAGTGTTGCAATTACTCTAA+AGG | 0.448480 | tig0028540:-4083 | Msa1438310:CDS |
| GATTTAAAAGGAAGGCTAAT+GGG | 0.448690 | tig0028540:-3014 | Msa1438310:CDS |
| TTGGTTGGGGATACCGTTTA+CGG | 0.448882 | tig0028540:-3430 | Msa1438310:CDS |
| GTTAAAATGTGCTAATGAAA+AGG | 0.453600 | tig0028540:-3874 | Msa1438310:CDS |
| ATTCCAATTATGTGGTCTAA+AGG | 0.453696 | tig0028540:-1303 | Msa1438310:CDS |
| TAAGTGGAAATTGTAATACT+TGG | 0.454135 | tig0028540:-1556 | Msa1438310:CDS |
| AGATTTAAAAGGAAGGCTAA+TGG | 0.454210 | tig0028540:-3015 | Msa1438310:CDS |
| CATTTGGAGTGAAATTTCTC+GGG | 0.458568 | tig0028540:-3086 | Msa1438310:CDS |
| CGAGAACGAGGAGGCTTGCA+AGG | 0.461432 | tig0028540:-3356 | Msa1438310:CDS |
| GGGGAAGGTGGTTGTTGATG+CGG | 0.462487 | tig0028540:-3499 | Msa1438310:CDS |
| TACTTATACTTCCAGGGAGA+TGG | 0.464011 | tig0028540:-1636 | Msa1438310:intron |
| GGACCAAATTCCCAGATCTC+TGG | 0.464032 | tig0028540:+2744 | None:intergenic |
| AGTGTTGCAATTACTCTAAA+GGG | 0.465190 | tig0028540:-4082 | Msa1438310:CDS |
| AATTAGAGAAATTTAACGCT+TGG | 0.465650 | tig0028540:+4045 | None:intergenic |
| TTACTCTAAAGGGTGTCGTT+TGG | 0.466540 | tig0028540:-4072 | Msa1438310:CDS |
| GGTTCCGACGGTGAAGATTA+GGG | 0.467757 | tig0028540:-3547 | Msa1438310:CDS |
| GTGAAGATGGGATAGATTAT+CGG | 0.468771 | tig0028540:-3380 | Msa1438310:CDS |
| TTCCAATTATGTGGTCTAAA+GGG | 0.470517 | tig0028540:-1302 | Msa1438310:CDS |
| CATGGACAGCTTGATGTGAC+AGG | 0.473916 | tig0028540:-796 | Msa1438310:CDS |
| CAACTATTAGATGCTCCGTC+AGG | 0.476492 | tig0028540:-764 | Msa1438310:exon |
| GTTCTACTATTAGCATTAGC+AGG | 0.480267 | tig0028540:+2601 | None:intergenic |
| TGAGACCTTTGTTGAAAGAA+GGG | 0.480401 | tig0028540:-3815 | Msa1438310:CDS |
| TTCACAAGCAAGGACTCAAA+TGG | 0.481347 | tig0028540:+2436 | None:intergenic |
| CTGACGGAGCATCTAATAGT+TGG | 0.481699 | tig0028540:+765 | None:intergenic |
| GTGGAAATTGTAATACTTGG+AGG | 0.486615 | tig0028540:-1553 | Msa1438310:CDS |
| ACGTTGGAGGCATGTTCGAT+TGG | 0.488432 | tig0028540:-3600 | Msa1438310:CDS |
| ATCAATCACAAGGGAAGGAT+GGG | 0.489958 | tig0028540:-2909 | Msa1438310:CDS |
| CCCCTCCTCAAACTCGCAAA+AGG | 0.491850 | tig0028540:+3519 | None:intergenic |
| TTTACATCTGAAAATTTGGT+TGG | 0.492237 | tig0028540:-2499 | Msa1438310:CDS |
| GGGAGTAAGATCTATGCATC+TGG | 0.492566 | tig0028540:-2994 | Msa1438310:CDS |
| GCTAGGGAGGCTGCTGAGGT+TGG | 0.493613 | tig0028540:-3291 | Msa1438310:CDS |
| GTGGTGTGTGTATGTTGGTA+TGG | 0.494483 | tig0028540:-3752 | Msa1438310:CDS |
| AGGGAGATGGAGAATGTCAA+TGG | 0.495434 | tig0028540:-1623 | Msa1438310:CDS |
| TGGGGATACCGTTTACGGAA+GGG | 0.496649 | tig0028540:-3425 | Msa1438310:CDS |
| GGAGGAAGGTGGTGCGAGGT+GGG | 0.498668 | tig0028540:-3334 | Msa1438310:CDS |
| ACCGTTGAGTATTACGTTGG+AGG | 0.498843 | tig0028540:-3613 | Msa1438310:CDS |
| GTGCCAAGCCAAATCCTCAA+TGG | 0.498877 | tig0028540:-2477 | Msa1438310:CDS |
| AACGAGGAGGCTTGCAAGGG+AGG | 0.499615 | tig0028540:-3352 | Msa1438310:CDS |
| GAGTGAAATTTCTCGGGTCA+GGG | 0.501897 | tig0028540:-3080 | Msa1438310:CDS |
| CAGATATTCTATCCGAAGAC+GGG | 0.504233 | tig0028540:-1529 | Msa1438310:CDS |
| ATGTTCGATTGGGCCGCATA+AGG | 0.504398 | tig0028540:-3589 | Msa1438310:CDS |
| GCACATGTATGCGACTATAG+TGG | 0.505314 | tig0028540:+1582 | None:intergenic |
| TTGGGGATACCGTTTACGGA+AGG | 0.506581 | tig0028540:-3426 | Msa1438310:CDS |
| TGATTCTTGAGAATCATTGT+AGG | 0.509736 | tig0028540:+4188 | None:intergenic |
| TGCCAAGCCAAATCCTCAAT+GGG | 0.512422 | tig0028540:-2476 | Msa1438310:CDS |
| GATCAATCACAAGGGAAGGA+TGG | 0.512951 | tig0028540:-2910 | Msa1438310:CDS |
| GAGAATCATTGTAGGGTCTA+GGG | 0.519193 | tig0028540:+4196 | None:intergenic |
| ACAAAATCTAGCCCATCAAC+AGG | 0.519280 | tig0028540:+2295 | None:intergenic |
| TGCTACTTGCATATGGTGAC+GGG | 0.519766 | tig0028540:-2201 | Msa1438310:CDS |
| TTCCCATTGAGGATTTGGCT+TGG | 0.520183 | tig0028540:+2474 | None:intergenic |
| GCGGCGGTAAGTGAGGTTGA+TGG | 0.520845 | tig0028540:-2832 | Msa1438310:CDS |
| AGAAAGGGATGAAGCGGCTA+GGG | 0.523009 | tig0028540:-3307 | Msa1438310:CDS |
| TTTCAGATGTAAAATCTGGT+TGG | 0.526802 | tig0028540:+2509 | None:intergenic |
| AGGAGGCTTGCAAGGGAGGA+AGG | 0.529600 | tig0028540:-3348 | Msa1438310:CDS |
| GTGTGTATGTTGGTATGGTA+TGG | 0.535325 | tig0028540:-3747 | Msa1438310:CDS |
| TTCTGCACAACCAACACACT+CGG | 0.535694 | tig0028540:+3465 | None:intergenic |
| TTGAGTTTGGTAAAGTTAGG+AGG | 0.535710 | tig0028540:-3641 | Msa1438310:CDS |
| GGGAGGAAGGTGGTGCGAGG+TGG | 0.538969 | tig0028540:-3335 | Msa1438310:CDS |
| GATTCTTGAGAATCATTGTA+GGG | 0.540092 | tig0028540:+4189 | None:intergenic |
| CCCTCGGTAGATGGAAATGT+TGG | 0.540191 | tig0028540:-2721 | Msa1438310:CDS |
| GAAGCATGATCATCGATTCA+TGG | 0.540624 | tig0028540:-3154 | Msa1438310:CDS |
| CTAGAGTATTACCGGGGCAT+AGG | 0.541788 | tig0028540:-3044 | Msa1438310:CDS |
| TGCGAGGTGGGAAAGAGAAA+GGG | 0.542913 | tig0028540:-3322 | Msa1438310:CDS |
| GAGAAAGGGATGAAGCGGCT+AGG | 0.546899 | tig0028540:-3308 | Msa1438310:CDS |
| TCCTAGAGATTCCAATTATG+TGG | 0.547123 | tig0028540:-1311 | Msa1438310:CDS |
| GCTGAAATTGAAAAGGGTGA+AGG | 0.549396 | tig0028540:+4141 | None:intergenic |
| GGATACCGTTTACGGAAGGG+GGG | 0.549414 | tig0028540:-3422 | Msa1438310:CDS |
| GCTGCACGATCCAGAGATCT+GGG | 0.549473 | tig0028540:-2754 | Msa1438310:CDS |
| TTCATGTGGGGAGGTTCCGA+CGG | 0.553854 | tig0028540:-3559 | Msa1438310:CDS |
| CGTGAGCCAAATTTACAGAC+AGG | 0.553987 | tig0028540:-2670 | Msa1438310:CDS |
| TTCAGAAGAATCATCGAAGC+GGG | 0.554421 | tig0028540:+4228 | None:intergenic |
| GATTAGTGAGTATATTCAAA+GGG | 0.554727 | tig0028540:-3667 | Msa1438310:CDS |
| CTAATCACCAAACAAACACT+AGG | 0.556359 | tig0028540:+3684 | None:intergenic |
| TTGGTAATGATAATTCGTCT+GGG | 0.557761 | tig0028540:-2534 | Msa1438310:CDS |
| TCTCTCCCTTAGACATGCAC+AGG | 0.557940 | tig0028540:+833 | None:intergenic |
| ATTATGTGGTGTGTGTATGT+TGG | 0.560264 | tig0028540:-3757 | Msa1438310:CDS |
| TGAAAATTTGCAATCTTGTG+AGG | 0.560356 | tig0028540:-2635 | Msa1438310:CDS |
| TAGATTATCGGACGAGAACG+AGG | 0.562527 | tig0028540:-3368 | Msa1438310:CDS |
| AGCGGCTAGGGAGGCTGCTG+AGG | 0.565068 | tig0028540:-3295 | Msa1438310:CDS |
| GTCTGATGCGAGTGTGAAAG+TGG | 0.569041 | tig0028540:-2335 | Msa1438310:CDS |
| GGGAGATGGAGAATGTCAAT+GGG | 0.569857 | tig0028540:-1622 | Msa1438310:CDS |
| AATGTTTGAACGTAGCGCAT+CGG | 0.572899 | tig0028540:-2953 | Msa1438310:CDS |
| TCGGTAGATGGAAATGTTGG+TGG | 0.573549 | tig0028540:-2718 | Msa1438310:CDS |
| ATGCTACTTGCATATGGTGA+CGG | 0.583158 | tig0028540:-2202 | Msa1438310:CDS |
| CAAGGGAGGAAGGTGGTGCG+AGG | 0.583298 | tig0028540:-3338 | Msa1438310:CDS |
| AAACATTCAGAAGATGATGC+AGG | 0.583790 | tig0028540:+2883 | None:intergenic |
| TTTGTTTCTGAGAGGAATTG+TGG | 0.584333 | tig0028540:-3264 | Msa1438310:CDS |
| TAGACCAAATTTCACAAGCA+AGG | 0.584585 | tig0028540:+2426 | None:intergenic |
| GTTCACCTGTGCATGTCTAA+GGG | 0.585108 | tig0028540:-838 | Msa1438310:CDS |
| TTCACCGTTGAGTATTACGT+TGG | 0.588582 | tig0028540:-3616 | Msa1438310:CDS |
| TAAAGGGAGGGCTAGTGGCG+AGG | 0.591029 | tig0028540:-1286 | Msa1438310:intron |
| AAAAGCCCTTCTTTCAACAA+AGG | 0.592542 | tig0028540:+3810 | None:intergenic |
| GGTAATGATAATTCGTCTGG+GGG | 0.592787 | tig0028540:-2532 | Msa1438310:CDS |
| TTCGATTGGGCCGCATAAGG+AGG | 0.593965 | tig0028540:-3586 | Msa1438310:CDS |
| AAGGGATGAAGCGGCTAGGG+AGG | 0.595423 | tig0028540:-3304 | Msa1438310:CDS |
| TGTTCATTTCAAAAGTGCAA+CGG | 0.596162 | tig0028540:-2227 | Msa1438310:CDS |
| TGATTAGTGAGTATATTCAA+AGG | 0.596852 | tig0028540:-3668 | Msa1438310:CDS |
| TCGTGATCAATCACAAGGGA+AGG | 0.597196 | tig0028540:-2914 | Msa1438310:CDS |
| TCAGATATTCTATCCGAAGA+CGG | 0.597639 | tig0028540:-1530 | Msa1438310:CDS |
| CATGAAAACTCCTCCTTATG+CGG | 0.603246 | tig0028540:+3576 | None:intergenic |
| CAATTATGTGGTCTAAAGGG+AGG | 0.606447 | tig0028540:-1299 | Msa1438310:CDS |
| TTGGTTACTTTGTTTCTGAG+AGG | 0.606485 | tig0028540:-3272 | Msa1438310:CDS |
| TTTGACGCAGCCGAGTGTGT+TGG | 0.607286 | tig0028540:-3475 | Msa1438310:CDS |
| TGGTAATGATAATTCGTCTG+GGG | 0.607563 | tig0028540:-2533 | Msa1438310:CDS |
| CTCGTTTATGAGAAATATGG+AGG | 0.608506 | tig0028540:-2401 | Msa1438310:CDS |
| ATCTGAAGGTGATGGTGCAA+AGG | 0.610636 | tig0028540:-3238 | Msa1438310:CDS |
| TACTTTCGTGATCAATCACA+AGG | 0.612471 | tig0028540:-2919 | Msa1438310:CDS |
| TGGTCTAAAGGGAGGGCTAG+TGG | 0.614145 | tig0028540:-1291 | Msa1438310:CDS |
| CTGTCTGTAAATTTGGCTCA+CGG | 0.616653 | tig0028540:+2671 | None:intergenic |
| AATGCAAAATCTGTTACCCT+TGG | 0.621382 | tig0028540:-2808 | Msa1438310:CDS |
| GTATGGTCAGAATAAAGCTA+AGG | 0.622074 | tig0028540:-3730 | Msa1438310:CDS |
| ACGGTGATGCTACTTGCATA+TGG | 0.622924 | tig0028540:-2208 | Msa1438310:CDS |
| AATTATGTGGTCTAAAGGGA+GGG | 0.622971 | tig0028540:-1298 | Msa1438310:CDS |
| GGAAAGAGAAAGGGATGAAG+CGG | 0.628100 | tig0028540:-3313 | Msa1438310:CDS |
| CTCCATATTTCTCATAAACG+AGG | 0.629103 | tig0028540:+2402 | None:intergenic |
| TTGTTGCAGAGCCTGTTGAT+GGG | 0.630292 | tig0028540:-2306 | Msa1438310:CDS |
| AGGCTTGCAAGGGAGGAAGG+TGG | 0.631082 | tig0028540:-3345 | Msa1438310:CDS |
| GAGAACGAGGAGGCTTGCAA+GGG | 0.633776 | tig0028540:-3355 | Msa1438310:CDS |
| ACCACATAATTGGAATCTCT+AGG | 0.635370 | tig0028540:+1310 | None:intergenic |
| GAATCATGACGATGTGCATG+CGG | 0.636525 | tig0028540:-2851 | Msa1438310:CDS |
| GCCTCCAACGTAATACTCAA+CGG | 0.640775 | tig0028540:+3612 | None:intergenic |
| GATCATCGATTCATGGACAC+AGG | 0.644185 | tig0028540:-3147 | Msa1438310:CDS |
| CCAACATTTCCATCTACCGA+GGG | 0.644615 | tig0028540:+2721 | None:intergenic |
| AGATATTCTATCCGAAGACG+GGG | 0.650311 | tig0028540:-1528 | Msa1438310:CDS |
| ATGATGTGCAGCTGTTTGAA+CGG | 0.654538 | tig0028540:-1335 | Msa1438310:intron |
| TCAATCACAAGGGAAGGATG+GGG | 0.656768 | tig0028540:-2908 | Msa1438310:CDS |
| TGTGCATGCGGCGGTAAGTG+AGG | 0.658666 | tig0028540:-2839 | Msa1438310:CDS |
| TGTGGTGTATCTGAAGGTGA+TGG | 0.660757 | tig0028540:-3246 | Msa1438310:CDS |
| ACCAACATTTCCATCTACCG+AGG | 0.662673 | tig0028540:+2720 | None:intergenic |
| AAATCATCGTCTTCAACAGG+AGG | 0.680560 | tig0028540:+2556 | None:intergenic |
| AACATTTCCATCTACCGAGG+GGG | 0.682804 | tig0028540:+2723 | None:intergenic |
| AGGAATTGTGGTGTATCTGA+AGG | 0.684189 | tig0028540:-3252 | Msa1438310:CDS |
| ATTATCGGACGAGAACGAGG+AGG | 0.684302 | tig0028540:-3365 | Msa1438310:CDS |
| TAGTTCAACTGAGTTAAGTG+AGG | 0.686474 | tig0028540:-3205 | Msa1438310:CDS |
| ATTCAGAAGAATCATCGAAG+CGG | 0.691406 | tig0028540:+4227 | None:intergenic |
| CGTACCCTAATCTTCACCGT+CGG | 0.707450 | tig0028540:+3543 | None:intergenic |
| ATGGACAGCTTGATGTGACA+GGG | 0.709921 | tig0028540:-795 | Msa1438310:CDS |
| TCAATCAAAATCATTCATAG+CGG | 0.713170 | tig0028540:-4360 | Msa1438310:five_prime_UTR |
| GATATTCTATCCGAAGACGG+GGG | 0.735694 | tig0028540:-1527 | Msa1438310:CDS |
| GACAGCTTGATGTGACAGGG+TGG | 0.737327 | tig0028540:-792 | Msa1438310:CDS |
| GCTACTTGCATATGGTGACG+GGG | 0.742470 | tig0028540:-2200 | Msa1438310:CDS |
| CAACATTTCCATCTACCGAG+GGG | 0.742606 | tig0028540:+2722 | None:intergenic |
| TCATGACGATGTGCATGCGG+CGG | 0.752041 | tig0028540:-2848 | Msa1438310:CDS |
| ACTTTCGTGATCAATCACAA+GGG | 0.752314 | tig0028540:-2918 | Msa1438310:CDS |
| TTTGGTCTAGAGTATTACCG+GGG | 0.754915 | tig0028540:-3050 | Msa1438310:CDS |
| TGATGCGAGTGTGAAAGTGG+AGG | 0.760195 | tig0028540:-2332 | Msa1438310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAATCTTATTACTAT+TGG | - | tig0028540:3392-3411 | Msa1438310:CDS | 15.0% |
| !!! | TATATTCTATTTGATAGTTT+AGG | - | tig0028540:3891-3910 | Msa1438310:CDS | 15.0% |
| !!! | AATCATCACACTTTATTTTT+CGG | - | tig0028540:952-971 | Msa1438310:intron | 20.0% |
| !!! | ATTTTTCTGGTAAAAAAGTT+GGG | - | tig0028540:1187-1206 | Msa1438310:intron | 20.0% |
| !! | AAATTCTCACTAACAAAATA+TGG | + | tig0028540:1276-1295 | None:intergenic | 20.0% |
| !!! | ATATTTTGTTAGTGAGAATT+TGG | - | tig0028540:1275-1294 | Msa1438310:intron | 20.0% |
| !! | ATAGGAAAAACAGATTTAAA+AGG | - | tig0028540:2096-2115 | Msa1438310:intron | 20.0% |
| !!! | AAATTTTCAGATGTAAAATC+TGG | + | tig0028540:2620-2639 | None:intergenic | 20.0% |
| !!! | AGATTTTACATCTGAAAATT+TGG | - | tig0028540:2619-2638 | Msa1438310:CDS | 20.0% |
| !! | TTGACATTATTGAACAAAAT+TGG | - | tig0028540:3641-3660 | Msa1438310:CDS | 20.0% |
| !! | AGTAAATGAAATTTAAGTCA+GGG | + | tig0028540:3867-3886 | None:intergenic | 20.0% |
| !! | AAGTAAATGAAATTTAAGTC+AGG | + | tig0028540:3868-3887 | None:intergenic | 20.0% |
| !!! | GGAGTAAAAGTATATTATAT+TGG | + | tig0028540:4256-4275 | None:intergenic | 20.0% |
| ! | TCAATCAAAATCATTCATAG+CGG | - | tig0028540:762-781 | Msa1438310:exon | 25.0% |
| !! | TTTTTCGCTGAAATTGAAAA+GGG | + | tig0028540:990-1009 | None:intergenic | 25.0% |
| !!! | TTTTTTCGCTGAAATTGAAA+AGG | + | tig0028540:991-1010 | None:intergenic | 25.0% |
| ! | AATTAGAGAAATTTAACGCT+TGG | + | tig0028540:1080-1099 | None:intergenic | 25.0% |
| !! | AATTTTTCTGCTCAAAATGT+TGG | - | tig0028540:1096-1115 | Msa1438310:intron | 25.0% |
| !!! | AAAGACTTGATTTTGAGAAA+TGG | - | tig0028540:1129-1148 | Msa1438310:intron | 25.0% |
| !!! | AAGACTTGATTTTGAGAAAT+GGG | - | tig0028540:1130-1149 | Msa1438310:intron | 25.0% |
| ! | TTAAAATGTGCTAATGAATC+AGG | - | tig0028540:1159-1178 | Msa1438310:intron | 25.0% |
| !!! | GATTTTTCTGGTAAAAAAGT+TGG | - | tig0028540:1186-1205 | Msa1438310:intron | 25.0% |
| !! | GTAAAAAAGTTGGGAATTTT+AGG | - | tig0028540:1196-1215 | Msa1438310:intron | 25.0% |
| ! | GTTAAAATGTGCTAATGAAA+AGG | - | tig0028540:1248-1267 | Msa1438310:intron | 25.0% |
| ! | TGATTAGTGAGTATATTCAA+AGG | - | tig0028540:1454-1473 | Msa1438310:CDS | 25.0% |
| ! | GATTAGTGAGTATATTCAAA+GGG | - | tig0028540:1455-1474 | Msa1438310:CDS | 25.0% |
| !! | AAGAAAGATTTTACTTGGTT+GGG | - | tig0028540:1678-1697 | Msa1438310:intron | 25.0% |
| ! | GAAAAACAGATTTAAAAGGA+AGG | - | tig0028540:2100-2119 | Msa1438310:intron | 25.0% |
| !! | ACTAATATTTTCATCACCAA+GGG | + | tig0028540:2333-2352 | None:intergenic | 25.0% |
| ! | AACAGATAAAATTGAAGTCT+TGG | - | tig0028540:2541-2560 | Msa1438310:CDS | 25.0% |
| ! | TTTACATCTGAAAATTTGGT+TGG | - | tig0028540:2623-2642 | Msa1438310:CDS | 25.0% |
| !!! | AATAAGCTATAAGTTTTAGC+AGG | + | tig0028540:3049-3068 | None:intergenic | 25.0% |
| ! | TTTGACAATAATTCTTCTAG+AGG | - | tig0028540:3081-3100 | Msa1438310:CDS | 25.0% |
| ! | TATCGAGATAAATACCTATA+AGG | + | tig0028540:3139-3158 | None:intergenic | 25.0% |
| ! | TACTCTTATGTCTTTATCTT+TGG | - | tig0028540:3260-3279 | Msa1438310:CDS | 25.0% |
| ! | ATTCTTTACTTATACTTCCA+GGG | - | tig0028540:3480-3499 | Msa1438310:CDS | 25.0% |
| ! | TAAGTGGAAATTGTAATACT+TGG | - | tig0028540:3566-3585 | Msa1438310:CDS | 25.0% |
| !! | TAGGAATATTGTTTCTTGTT+TGG | - | tig0028540:3910-3929 | Msa1438310:CDS | 25.0% |
| !! | AGGAATATTGTTTCTTGTTT+GGG | - | tig0028540:3911-3930 | Msa1438310:CDS | 25.0% |
| !!! | TTTTTTTTTGTCTCAGATTG+TGG | - | tig0028540:4143-4162 | Msa1438310:CDS | 25.0% |
| !! | TATACTTTTACTCCATGTTT+AGG | - | tig0028540:4262-4281 | Msa1438310:five_prime_UTR | 25.0% |
| GATTCTTGAGAATCATTGTA+GGG | + | tig0028540:936-955 | None:intergenic | 30.0% | |
| TGATTCTTGAGAATCATTGT+AGG | + | tig0028540:937-956 | None:intergenic | 30.0% | |
| CGAAAAAAGCTTCAAAACAA+AGG | - | tig0028540:1003-1022 | Msa1438310:intron | 30.0% | |
| ! | AAGTGTTGCAATTACTCTAA+AGG | - | tig0028540:1039-1058 | Msa1438310:intron | 30.0% |
| AGTGTTGCAATTACTCTAAA+GGG | - | tig0028540:1040-1059 | Msa1438310:intron | 30.0% | |
| !! | AAAGTTGGGAATTTTAGGAA+AGG | - | tig0028540:1201-1220 | Msa1438310:intron | 30.0% |
| !! | AAAGGCTTGATTTTGAGAAA+TGG | - | tig0028540:1219-1238 | Msa1438310:intron | 30.0% |
| !! | AAGGCTTGATTTTGAGAAAT+GGG | - | tig0028540:1220-1239 | Msa1438310:intron | 30.0% |
| GTTTATACTGCTGTATTATG+TGG | - | tig0028540:1351-1370 | Msa1438310:intron | 30.0% | |
| ATGTTGAGTTTGGTAAAGTT+AGG | - | tig0028540:1478-1497 | Msa1438310:CDS | 30.0% | |
| ! | TGCAGAAGAAAGATTTTACT+TGG | - | tig0028540:1673-1692 | Msa1438310:intron | 30.0% |
| ! | GAAGAAAGATTTTACTTGGT+TGG | - | tig0028540:1677-1696 | Msa1438310:intron | 30.0% |
| ! | AGAAAGATTTTACTTGGTTG+GGG | - | tig0028540:1679-1698 | Msa1438310:intron | 30.0% |
| !! | ATTTTGGTCTAGAGTATTAC+CGG | - | tig0028540:2070-2089 | Msa1438310:intron | 30.0% |
| AGATTTAAAAGGAAGGCTAA+TGG | - | tig0028540:2107-2126 | Msa1438310:intron | 30.0% | |
| GATTTAAAAGGAAGGCTAAT+GGG | - | tig0028540:2108-2127 | Msa1438310:intron | 30.0% | |
| ! | CACTAATATTTTCATCACCA+AGG | + | tig0028540:2334-2353 | None:intergenic | 30.0% |
| TGAAAATTTGCAATCTTGTG+AGG | - | tig0028540:2487-2506 | Msa1438310:CDS | 30.0% | |
| !! | TTTGGTAATGATAATTCGTC+TGG | - | tig0028540:2587-2606 | Msa1438310:CDS | 30.0% |
| !! | TTGGTAATGATAATTCGTCT+GGG | - | tig0028540:2588-2607 | Msa1438310:CDS | 30.0% |
| TTTCAGATGTAAAATCTGGT+TGG | + | tig0028540:2616-2635 | None:intergenic | 30.0% | |
| TGAAAATAAGTTTCCCATTG+AGG | + | tig0028540:2662-2681 | None:intergenic | 30.0% | |
| AACCTCGTTTATGAGAAATA+TGG | - | tig0028540:2718-2737 | Msa1438310:CDS | 30.0% | |
| TCAATATCTTGCTTTCTTTC+TGG | - | tig0028540:2746-2765 | Msa1438310:CDS | 30.0% | |
| ! | TCAGACTTCAACTTTTCAAT+GGG | + | tig0028540:2773-2792 | None:intergenic | 30.0% |
| ! | ATCAGACTTCAACTTTTCAA+TGG | + | tig0028540:2774-2793 | None:intergenic | 30.0% |
| TGAACAGAATCCAATATAAC+AGG | + | tig0028540:2881-2900 | None:intergenic | 30.0% | |
| ! | TGTTCATTTCAAAAGTGCAA+CGG | - | tig0028540:2895-2914 | Msa1438310:CDS | 30.0% |
| ! | ACAATAATTCTTCTAGAGGT+TGG | - | tig0028540:3085-3104 | Msa1438310:CDS | 30.0% |
| ! | CAATAATTCTTCTAGAGGTT+GGG | - | tig0028540:3086-3105 | Msa1438310:CDS | 30.0% |
| GAGATAAATACCTATAAGGA+TGG | + | tig0028540:3135-3154 | None:intergenic | 30.0% | |
| CATAAGAGTAGCTTGATTTA+GGG | + | tig0028540:3250-3269 | None:intergenic | 30.0% | |
| ACATAAGAGTAGCTTGATTT+AGG | + | tig0028540:3251-3270 | None:intergenic | 30.0% | |
| CATTCTTTACTTATACTTCC+AGG | - | tig0028540:3479-3498 | Msa1438310:CDS | 30.0% | |
| ! | AATTGACAATCTTTTTGTCC+CGG | - | tig0028540:3678-3697 | Msa1438310:CDS | 30.0% |
| ATAATATTGAACAGCTTACC+GGG | + | tig0028540:3699-3718 | None:intergenic | 30.0% | |
| CATAATATTGAACAGCTTAC+CGG | + | tig0028540:3700-3719 | None:intergenic | 30.0% | |
| ATTCCAATTATGTGGTCTAA+AGG | - | tig0028540:3819-3838 | Msa1438310:CDS | 30.0% | |
| TTCCAATTATGTGGTCTAAA+GGG | - | tig0028540:3820-3839 | Msa1438310:CDS | 30.0% | |
| GACATAATATGTCAGAAACA+TGG | + | tig0028540:3944-3963 | None:intergenic | 30.0% | |
| AACAAAGTCTGAAAAAACGA+AGG | + | tig0028540:4185-4204 | None:intergenic | 30.0% | |
| !!! | CGTTTTTTCAGACTTTGTTA+CGG | - | tig0028540:4186-4205 | Msa1438310:exon | 30.0% |
| ! | TTGTTGCTCATTGTTGCTTA+TGG | + | tig0028540:800-819 | None:intergenic | 35.0% |
| ! | GTTACTGCTACATTGTTGTT+GGG | + | tig0028540:831-850 | None:intergenic | 35.0% |
| TGTTACTGCTACATTGTTGT+TGG | + | tig0028540:832-851 | None:intergenic | 35.0% | |
| ATTCAGAAGAATCATCGAAG+CGG | + | tig0028540:898-917 | None:intergenic | 35.0% | |
| ! | GAATCAGGAAGAGATTTTTC+TGG | - | tig0028540:1174-1193 | Msa1438310:intron | 35.0% |
| !! | TGATTTTGAGAAATGGGTCA+AGG | - | tig0028540:1136-1155 | Msa1438310:intron | 35.0% |
| TTGAGACCTTTGTTGAAAGA+AGG | - | tig0028540:1306-1325 | Msa1438310:CDS | 35.0% | |
| TGAGACCTTTGTTGAAAGAA+GGG | - | tig0028540:1307-1326 | Msa1438310:CDS | 35.0% | |
| AAAAGCCCTTCTTTCAACAA+AGG | + | tig0028540:1315-1334 | None:intergenic | 35.0% | |
| ! | AAGAAGGGCTTTTGTTGATA+AGG | - | tig0028540:1322-1341 | Msa1438310:CDS | 35.0% |
| !! | AGAAGGGCTTTTGTTGATAA+GGG | - | tig0028540:1323-1342 | Msa1438310:CDS | 35.0% |
| ATTATGTGGTGTGTGTATGT+TGG | - | tig0028540:1365-1384 | Msa1438310:intron | 35.0% | |
| GTATGGTCAGAATAAAGCTA+AGG | - | tig0028540:1392-1411 | Msa1438310:intron | 35.0% | |
| TTTGTTGCCTAGTGTTTGTT+TGG | - | tig0028540:1431-1450 | Msa1438310:intron | 35.0% | |
| CTAATCACCAAACAAACACT+AGG | + | tig0028540:1441-1460 | None:intergenic | 35.0% | |
| ATTCAAAGGGATGTTGAGTT+TGG | - | tig0028540:1468-1487 | Msa1438310:CDS | 35.0% | |
| TTGAGTTTGGTAAAGTTAGG+AGG | - | tig0028540:1481-1500 | Msa1438310:CDS | 35.0% | |
| ! | ATAAGGAGGAGTTTTCATGT+GGG | - | tig0028540:1550-1569 | Msa1438310:CDS | 35.0% |
| !!! | AGGATATTTTCGAGTGAAGA+TGG | - | tig0028540:1729-1748 | Msa1438310:intron | 35.0% |
| !!! | GGATATTTTCGAGTGAAGAT+GGG | - | tig0028540:1730-1749 | Msa1438310:intron | 35.0% |
| GTGAAGATGGGATAGATTAT+CGG | - | tig0028540:1742-1761 | Msa1438310:intron | 35.0% | |
| !! | TTGGTTACTTTGTTTCTGAG+AGG | - | tig0028540:1850-1869 | Msa1438310:intron | 35.0% |
| !! | TTTGTTTCTGAGAGGAATTG+TGG | - | tig0028540:1858-1877 | Msa1438310:intron | 35.0% |
| CTTAACTCAGTTGAACTACT+TGG | + | tig0028540:1915-1934 | None:intergenic | 35.0% | |
| TAGTTCAACTGAGTTAAGTG+AGG | - | tig0028540:1917-1936 | Msa1438310:intron | 35.0% | |
| !! | GCAGATTTGGAAAAAGCATT+TGG | - | tig0028540:2020-2039 | Msa1438310:intron | 35.0% |
| ! | GCATTTGGAGTGAAATTTCT+CGG | - | tig0028540:2035-2054 | Msa1438310:intron | 35.0% |
| ! | CATTTGGAGTGAAATTTCTC+GGG | - | tig0028540:2036-2055 | Msa1438310:intron | 35.0% |
| !! | TTTTGGTCTAGAGTATTACC+GGG | - | tig0028540:2071-2090 | Msa1438310:intron | 35.0% |
| TACTTTCGTGATCAATCACA+AGG | - | tig0028540:2203-2222 | Msa1438310:CDS | 35.0% | |
| ACTTTCGTGATCAATCACAA+GGG | - | tig0028540:2204-2223 | Msa1438310:CDS | 35.0% | |
| AAACATTCAGAAGATGATGC+AGG | + | tig0028540:2242-2261 | None:intergenic | 35.0% | |
| AATGCAAAATCTGTTACCCT+TGG | - | tig0028540:2314-2333 | Msa1438310:CDS | 35.0% | |
| TTCTCTCCTGTCTGTAAATT+TGG | + | tig0028540:2461-2480 | None:intergenic | 35.0% | |
| GTTCTACTATTAGCATTAGC+AGG | + | tig0028540:2524-2543 | None:intergenic | 35.0% | |
| ! | TGGTAATGATAATTCGTCTG+GGG | - | tig0028540:2589-2608 | Msa1438310:CDS | 35.0% |
| TAAGTTTCCCATTGAGGATT+TGG | + | tig0028540:2656-2675 | None:intergenic | 35.0% | |
| TAGACCAAATTTCACAAGCA+AGG | + | tig0028540:2699-2718 | None:intergenic | 35.0% | |
| CTCCATATTTCTCATAAACG+AGG | + | tig0028540:2723-2742 | None:intergenic | 35.0% | |
| CTCGTTTATGAGAAATATGG+AGG | - | tig0028540:2721-2740 | Msa1438310:CDS | 35.0% | |
| ! | CAGACTTCAACTTTTCAATG+GGG | + | tig0028540:2772-2791 | None:intergenic | 35.0% |
| TAAGACGCTTCCTGTTATAT+TGG | - | tig0028540:2868-2887 | Msa1438310:CDS | 35.0% | |
| CTTCTTGAAGTGTATAGCAA+TGG | - | tig0028540:3016-3035 | Msa1438310:CDS | 35.0% | |
| ATGTCATTAGCCATCCTTAT+AGG | - | tig0028540:3122-3141 | Msa1438310:CDS | 35.0% | |
| GTGGAAATTGTAATACTTGG+AGG | - | tig0028540:3569-3588 | Msa1438310:CDS | 35.0% | |
| TCAGATATTCTATCCGAAGA+CGG | - | tig0028540:3592-3611 | Msa1438310:CDS | 35.0% | |
| AACAGCAAAGCAGGAAATAT+AGG | + | tig0028540:3728-3747 | None:intergenic | 35.0% | |
| !! | CTTTGCTGTTTAAGTTCGAT+AGG | - | tig0028540:3738-3757 | Msa1438310:CDS | 35.0% |
| TCCTAGAGATTCCAATTATG+TGG | - | tig0028540:3811-3830 | Msa1438310:CDS | 35.0% | |
| ACCACATAATTGGAATCTCT+AGG | + | tig0028540:3815-3834 | None:intergenic | 35.0% | |
| AATTATGTGGTCTAAAGGGA+GGG | - | tig0028540:3824-3843 | Msa1438310:CDS | 35.0% | |
| AGACTTTGTTACGGTTATGT+TGG | - | tig0028540:4195-4214 | Msa1438310:exon | 35.0% | |
| ! | GAGACTTTTCCAAATTTGCA+TGG | - | tig0028540:4308-4327 | Msa1438310:five_prime_UTR | 35.0% |
| ! | CTCATTGTTGCTTATGGCTA+TGG | + | tig0028540:794-813 | None:intergenic | 40.0% |
| TTCAGAAGAATCATCGAAGC+GGG | + | tig0028540:897-916 | None:intergenic | 40.0% | |
| GAGAATCATTGTAGGGTCTA+GGG | + | tig0028540:929-948 | None:intergenic | 40.0% | |
| TGAGAATCATTGTAGGGTCT+AGG | + | tig0028540:930-949 | None:intergenic | 40.0% | |
| GCTGAAATTGAAAAGGGTGA+AGG | + | tig0028540:984-1003 | None:intergenic | 40.0% | |
| !! | TTACTCTAAAGGGTGTCGTT+TGG | - | tig0028540:1050-1069 | Msa1438310:intron | 40.0% |
| GTGTGTATGTTGGTATGGTA+TGG | - | tig0028540:1375-1394 | Msa1438310:intron | 40.0% | |
| TTCACCGTTGAGTATTACGT+TGG | - | tig0028540:1506-1525 | Msa1438310:CDS | 40.0% | |
| CATGAAAACTCCTCCTTATG+CGG | + | tig0028540:1549-1568 | None:intergenic | 40.0% | |
| ! | CATAAGGAGGAGTTTTCATG+TGG | - | tig0028540:1549-1568 | Msa1438310:CDS | 40.0% |
| ! | TAAGGAGGAGTTTTCATGTG+GGG | - | tig0028540:1551-1570 | Msa1438310:CDS | 40.0% |
| AGGAATTGTGGTGTATCTGA+AGG | - | tig0028540:1870-1889 | Msa1438310:intron | 40.0% | |
| !! | GAAGCATGATCATCGATTCA+TGG | - | tig0028540:1968-1987 | Msa1438310:intron | 40.0% |
| ! | TTTGGTCTAGAGTATTACCG+GGG | - | tig0028540:2072-2091 | Msa1438310:intron | 40.0% |
| !! | AATCTGTTTTTCCTATGCCC+CGG | + | tig0028540:2092-2111 | None:intergenic | 40.0% |
| AATGTTTGAACGTAGCGCAT+CGG | - | tig0028540:2169-2188 | Msa1438310:intron | 40.0% | |
| ATCAATCACAAGGGAAGGAT+GGG | - | tig0028540:2213-2232 | Msa1438310:CDS | 40.0% | |
| ! | CTGTCTGTAAATTTGGCTCA+CGG | + | tig0028540:2454-2473 | None:intergenic | 40.0% |
| AAATCATCGTCTTCAACAGG+AGG | + | tig0028540:2569-2588 | None:intergenic | 40.0% | |
| CCAAAATCATCGTCTTCAAC+AGG | + | tig0028540:2572-2591 | None:intergenic | 40.0% | |
| ! | CCTGTTGAAGACGATGATTT+TGG | - | tig0028540:2569-2588 | Msa1438310:CDS | 40.0% |
| GGTAATGATAATTCGTCTGG+GGG | - | tig0028540:2590-2609 | Msa1438310:CDS | 40.0% | |
| TTCACAAGCAAGGACTCAAA+TGG | + | tig0028540:2689-2708 | None:intergenic | 40.0% | |
| GAGTCCTTGCTTGTGAAATT+TGG | - | tig0028540:2692-2711 | Msa1438310:CDS | 40.0% | |
| ACAAAATCTAGCCCATCAAC+AGG | + | tig0028540:2830-2849 | None:intergenic | 40.0% | |
| ! | CTAGATTTTGTGCAGTCTGA+AGG | - | tig0028540:2839-2858 | Msa1438310:CDS | 40.0% |
| ! | ATGCTACTTGCATATGGTGA+CGG | - | tig0028540:2920-2939 | Msa1438310:CDS | 40.0% |
| TAATCTGTAATCGCTCAGAG+AGG | - | tig0028540:2980-2999 | Msa1438310:CDS | 40.0% | |
| AAGTGTATAGCAATGGCAGT+TGG | - | tig0028540:3023-3042 | Msa1438310:CDS | 40.0% | |
| GTACTTAGTCATCTTATGCC+TGG | + | tig0028540:3228-3247 | None:intergenic | 40.0% | |
| TACTTATACTTCCAGGGAGA+TGG | - | tig0028540:3486-3505 | Msa1438310:CDS | 40.0% | |
| CGCATACATGTGCATTTAAG+TGG | - | tig0028540:3550-3569 | Msa1438310:CDS | 40.0% | |
| CAGATATTCTATCCGAAGAC+GGG | - | tig0028540:3593-3612 | Msa1438310:CDS | 40.0% | |
| AGATATTCTATCCGAAGACG+GGG | - | tig0028540:3594-3613 | Msa1438310:CDS | 40.0% | |
| TCGAACTTAAACAGCAAAGC+AGG | + | tig0028540:3737-3756 | None:intergenic | 40.0% | |
| ATGATGTGCAGCTGTTTGAA+CGG | - | tig0028540:3787-3806 | Msa1438310:CDS | 40.0% | |
| CTCCCTTTAGACCACATAAT+TGG | + | tig0028540:3825-3844 | None:intergenic | 40.0% | |
| CAATTATGTGGTCTAAAGGG+AGG | - | tig0028540:3823-3842 | Msa1438310:CDS | 40.0% | |
| TCAAGCTGTCCATGCAAATT+TGG | + | tig0028540:4320-4339 | None:intergenic | 40.0% | |
| GTGGTGTGTGTATGTTGGTA+TGG | - | tig0028540:1370-1389 | Msa1438310:intron | 45.0% | |
| ACCGTTGAGTATTACGTTGG+AGG | - | tig0028540:1509-1528 | Msa1438310:CDS | 45.0% | |
| GCCTCCAACGTAATACTCAA+CGG | + | tig0028540:1513-1532 | None:intergenic | 45.0% | |
| ! | TACGACCTTTTGCGAGTTTG+AGG | - | tig0028540:1598-1617 | Msa1438310:CDS | 45.0% |
| ! | ACCTTTTGCGAGTTTGAGGA+GGG | - | tig0028540:1602-1621 | Msa1438310:CDS | 45.0% |
| TTCTGCACAACCAACACACT+CGG | + | tig0028540:1660-1679 | None:intergenic | 45.0% | |
| TTGGTTGGGGATACCGTTTA+CGG | - | tig0028540:1692-1711 | Msa1438310:intron | 45.0% | |
| TAGATTATCGGACGAGAACG+AGG | - | tig0028540:1754-1773 | Msa1438310:intron | 45.0% | |
| GGAAAGAGAAAGGGATGAAG+CGG | - | tig0028540:1809-1828 | Msa1438310:intron | 45.0% | |
| TGTGGTGTATCTGAAGGTGA+TGG | - | tig0028540:1876-1895 | Msa1438310:intron | 45.0% | |
| ! | ATCTGAAGGTGATGGTGCAA+AGG | - | tig0028540:1884-1903 | Msa1438310:intron | 45.0% |
| !! | GATCATCGATTCATGGACAC+AGG | - | tig0028540:1975-1994 | Msa1438310:intron | 45.0% |
| GAGTGAAATTTCTCGGGTCA+GGG | - | tig0028540:2042-2061 | Msa1438310:intron | 45.0% | |
| GGGAGTAAGATCTATGCATC+TGG | - | tig0028540:2128-2147 | Msa1438310:intron | 45.0% | |
| TCGTGATCAATCACAAGGGA+AGG | - | tig0028540:2208-2227 | Msa1438310:CDS | 45.0% | |
| GATCAATCACAAGGGAAGGA+TGG | - | tig0028540:2212-2231 | Msa1438310:CDS | 45.0% | |
| TCAATCACAAGGGAAGGATG+GGG | - | tig0028540:2214-2233 | Msa1438310:CDS | 45.0% | |
| GAATCATGACGATGTGCATG+CGG | - | tig0028540:2271-2290 | Msa1438310:CDS | 45.0% | |
| GATCCAGAGATCTGGGAATT+TGG | - | tig0028540:2375-2394 | Msa1438310:CDS | 45.0% | |
| AACATTTCCATCTACCGAGG+GGG | + | tig0028540:2402-2421 | None:intergenic | 45.0% | |
| CAACATTTCCATCTACCGAG+GGG | + | tig0028540:2403-2422 | None:intergenic | 45.0% | |
| CCAACATTTCCATCTACCGA+GGG | + | tig0028540:2404-2423 | None:intergenic | 45.0% | |
| ACCAACATTTCCATCTACCG+AGG | + | tig0028540:2405-2424 | None:intergenic | 45.0% | |
| TCGGTAGATGGAAATGTTGG+TGG | - | tig0028540:2404-2423 | Msa1438310:CDS | 45.0% | |
| CGTGAGCCAAATTTACAGAC+AGG | - | tig0028540:2452-2471 | Msa1438310:CDS | 45.0% | |
| TGCCAAGCCAAATCCTCAAT+GGG | - | tig0028540:2646-2665 | Msa1438310:CDS | 45.0% | |
| TTCCCATTGAGGATTTGGCT+TGG | + | tig0028540:2651-2670 | None:intergenic | 45.0% | |
| ATTGTTGCAGAGCCTGTTGA+TGG | - | tig0028540:2815-2834 | Msa1438310:CDS | 45.0% | |
| TTGTTGCAGAGCCTGTTGAT+GGG | - | tig0028540:2816-2835 | Msa1438310:CDS | 45.0% | |
| ! | ACGGTGATGCTACTTGCATA+TGG | - | tig0028540:2914-2933 | Msa1438310:CDS | 45.0% |
| ! | TGCTACTTGCATATGGTGAC+GGG | - | tig0028540:2921-2940 | Msa1438310:CDS | 45.0% |
| TAAGTATCCCTCTGAACTCC+AGG | - | tig0028540:3207-3226 | Msa1438310:CDS | 45.0% | |
| TCTTATGCCTGGAGTTCAGA+GGG | + | tig0028540:3217-3236 | None:intergenic | 45.0% | |
| ATCTTATGCCTGGAGTTCAG+AGG | + | tig0028540:3218-3237 | None:intergenic | 45.0% | |
| ATTGACATTCTCCATCTCCC+TGG | + | tig0028540:3500-3519 | None:intergenic | 45.0% | |
| AGGGAGATGGAGAATGTCAA+TGG | - | tig0028540:3499-3518 | Msa1438310:CDS | 45.0% | |
| GGGAGATGGAGAATGTCAAT+GGG | - | tig0028540:3500-3519 | Msa1438310:CDS | 45.0% | |
| GCACATGTATGCGACTATAG+TGG | + | tig0028540:3543-3562 | None:intergenic | 45.0% | |
| GATATTCTATCCGAAGACGG+GGG | - | tig0028540:3595-3614 | Msa1438310:CDS | 45.0% | |
| TGCACAGGTGAACCTAAACA+TGG | + | tig0028540:4277-4296 | None:intergenic | 45.0% | |
| GTTCACCTGTGCATGTCTAA+GGG | - | tig0028540:4284-4303 | Msa1438310:five_prime_UTR | 45.0% | |
| ATGGACAGCTTGATGTGACA+GGG | - | tig0028540:4327-4346 | Msa1438310:five_prime_UTR | 45.0% | |
| ! | CTGACGGAGCATCTAATAGT+TGG | + | tig0028540:4360-4379 | None:intergenic | 45.0% |
| CAACTATTAGATGCTCCGTC+AGG | - | tig0028540:4358-4377 | Msa1438310:five_prime_UTR | 45.0% | |
| !! | TATTAAATCTTTATATTAAA+GGG | + | tig0028540:3173-3192 | None:intergenic | 5.0% |
| !! | ATATTAAATCTTTATATTAA+AGG | + | tig0028540:3174-3193 | None:intergenic | 5.0% |
| ! | ACGTTGGAGGCATGTTCGAT+TGG | - | tig0028540:1522-1541 | Msa1438310:CDS | 50.0% |
| ! | CGTTGGAGGCATGTTCGATT+GGG | - | tig0028540:1523-1542 | Msa1438310:CDS | 50.0% |
| ATGTTCGATTGGGCCGCATA+AGG | - | tig0028540:1533-1552 | Msa1438310:CDS | 50.0% | |
| AGGTTCCGACGGTGAAGATT+AGG | - | tig0028540:1574-1593 | Msa1438310:CDS | 50.0% | |
| GGTTCCGACGGTGAAGATTA+GGG | - | tig0028540:1575-1594 | Msa1438310:CDS | 50.0% | |
| CGTACCCTAATCTTCACCGT+CGG | + | tig0028540:1582-1601 | None:intergenic | 50.0% | |
| ! | GACCTTTTGCGAGTTTGAGG+AGG | - | tig0028540:1601-1620 | Msa1438310:CDS | 50.0% |
| ! | CCTTTTGCGAGTTTGAGGAG+GGG | - | tig0028540:1603-1622 | Msa1438310:CDS | 50.0% |
| ! | CTTTTGCGAGTTTGAGGAGG+GGG | - | tig0028540:1604-1623 | Msa1438310:CDS | 50.0% |
| TTGGGGATACCGTTTACGGA+AGG | - | tig0028540:1696-1715 | Msa1438310:intron | 50.0% | |
| TGGGGATACCGTTTACGGAA+GGG | - | tig0028540:1697-1716 | Msa1438310:intron | 50.0% | |
| ATTATCGGACGAGAACGAGG+AGG | - | tig0028540:1757-1776 | Msa1438310:intron | 50.0% | |
| TGCGAGGTGGGAAAGAGAAA+GGG | - | tig0028540:1800-1819 | Msa1438310:intron | 50.0% | |
| AGAAAGGGATGAAGCGGCTA+GGG | - | tig0028540:1815-1834 | Msa1438310:intron | 50.0% | |
| CCACCATCCACGCAGAAAAA+CGG | + | tig0028540:1948-1967 | None:intergenic | 50.0% | |
| ! | CGTTTTTCTGCGTGGATGGT+GGG | - | tig0028540:1946-1965 | Msa1438310:intron | 50.0% |
| CGATACGAAGCACGCAGATT+TGG | - | tig0028540:2007-2026 | Msa1438310:intron | 50.0% | |
| GGAGTGAAATTTCTCGGGTC+AGG | - | tig0028540:2041-2060 | Msa1438310:intron | 50.0% | |
| ! | TCGGGTCAGGGTTTCGATTT+TGG | - | tig0028540:2054-2073 | Msa1438310:intron | 50.0% |
| ! | CTAGAGTATTACCGGGGCAT+AGG | - | tig0028540:2078-2097 | Msa1438310:intron | 50.0% |
| GGACCAAATTCCCAGATCTC+TGG | + | tig0028540:2381-2400 | None:intergenic | 50.0% | |
| CCCTCGGTAGATGGAAATGT+TGG | - | tig0028540:2401-2420 | Msa1438310:CDS | 50.0% | |
| GTGCCAAGCCAAATCCTCAA+TGG | - | tig0028540:2645-2664 | Msa1438310:CDS | 50.0% | |
| GTCTGATGCGAGTGTGAAAG+TGG | - | tig0028540:2787-2806 | Msa1438310:CDS | 50.0% | |
| TGATGCGAGTGTGAAAGTGG+AGG | - | tig0028540:2790-2809 | Msa1438310:CDS | 50.0% | |
| ! | GCTACTTGCATATGGTGACG+GGG | - | tig0028540:2922-2941 | Msa1438310:CDS | 50.0% |
| !! | CATATGGTGACGGGGAAGTT+AGG | - | tig0028540:2930-2949 | Msa1438310:CDS | 50.0% |
| ATCGCTCAGAGAGGATCTGT+CGG | - | tig0028540:2989-3008 | Msa1438310:CDS | 50.0% | |
| GGTTCACCTGTGCATGTCTA+AGG | - | tig0028540:4283-4302 | Msa1438310:five_prime_UTR | 50.0% | |
| TCTCTCCCTTAGACATGCAC+AGG | + | tig0028540:4292-4311 | None:intergenic | 50.0% | |
| CATGGACAGCTTGATGTGAC+AGG | - | tig0028540:4326-4345 | Msa1438310:five_prime_UTR | 50.0% | |
| TTCGATTGGGCCGCATAAGG+AGG | - | tig0028540:1536-1555 | Msa1438310:CDS | 55.0% | |
| ! | GGAGGAGTTTTCATGTGGGG+AGG | - | tig0028540:1554-1573 | Msa1438310:CDS | 55.0% |
| TTCATGTGGGGAGGTTCCGA+CGG | - | tig0028540:1563-1582 | Msa1438310:CDS | 55.0% | |
| CCCCTCCTCAAACTCGCAAA+AGG | + | tig0028540:1606-1625 | None:intergenic | 55.0% | |
| GGGGAAGGTGGTTGTTGATG+CGG | - | tig0028540:1623-1642 | Msa1438310:CDS | 55.0% | |
| TTTGACGCAGCCGAGTGTGT+TGG | - | tig0028540:1647-1666 | Msa1438310:intron | 55.0% | |
| GGGGATACCGTTTACGGAAG+GGG | - | tig0028540:1698-1717 | Msa1438310:intron | 55.0% | |
| GGGATACCGTTTACGGAAGG+GGG | - | tig0028540:1699-1718 | Msa1438310:intron | 55.0% | |
| GGATACCGTTTACGGAAGGG+GGG | - | tig0028540:1700-1719 | Msa1438310:intron | 55.0% | |
| TCTCTCCCCCCTTCCGTAAA+CGG | + | tig0028540:1708-1727 | None:intergenic | 55.0% | |
| GAGAACGAGGAGGCTTGCAA+GGG | - | tig0028540:1767-1786 | Msa1438310:intron | 55.0% | |
| GTGCGAGGTGGGAAAGAGAA+AGG | - | tig0028540:1799-1818 | Msa1438310:intron | 55.0% | |
| GAGAAAGGGATGAAGCGGCT+AGG | - | tig0028540:1814-1833 | Msa1438310:intron | 55.0% | |
| ATCCACGCAGAAAAACGGCG+TGG | + | tig0028540:1943-1962 | None:intergenic | 55.0% | |
| !!! | ACGCCGTTTTTCTGCGTGGA+TGG | - | tig0028540:1942-1961 | Msa1438310:intron | 55.0% |
| !! | CCGTTTTTCTGCGTGGATGG+TGG | - | tig0028540:1945-1964 | Msa1438310:intron | 55.0% |
| TCATGACGATGTGCATGCGG+CGG | - | tig0028540:2274-2293 | Msa1438310:CDS | 55.0% | |
| TGCTGCACGATCCAGAGATC+TGG | - | tig0028540:2367-2386 | Msa1438310:CDS | 55.0% | |
| GCTGCACGATCCAGAGATCT+GGG | - | tig0028540:2368-2387 | Msa1438310:CDS | 55.0% | |
| TCTGGGAATTTGGTCCCCCT+CGG | - | tig0028540:2385-2404 | Msa1438310:CDS | 55.0% | |
| ATTTGGTCCCCCTCGGTAGA+TGG | - | tig0028540:2392-2411 | Msa1438310:CDS | 55.0% | |
| !! | GGTGACGGGGAAGTTAGGTA+AGG | - | tig0028540:2935-2954 | Msa1438310:CDS | 55.0% |
| TGGTCTAAAGGGAGGGCTAG+TGG | - | tig0028540:3831-3850 | Msa1438310:CDS | 55.0% | |
| GACAGCTTGATGTGACAGGG+TGG | - | tig0028540:4330-4349 | Msa1438310:five_prime_UTR | 55.0% | |
| TGCGAGTTTGAGGAGGGGGA+AGG | - | tig0028540:1608-1627 | Msa1438310:CDS | 60.0% | |
| GAGTTTGAGGAGGGGGAAGG+TGG | - | tig0028540:1611-1630 | Msa1438310:CDS | 60.0% | |
| TTACGGAAGGGGGGAGAGAG+AGG | - | tig0028540:1709-1728 | Msa1438310:intron | 60.0% | |
| CGAGAACGAGGAGGCTTGCA+AGG | - | tig0028540:1766-1785 | Msa1438310:intron | 60.0% | |
| AACGAGGAGGCTTGCAAGGG+AGG | - | tig0028540:1770-1789 | Msa1438310:intron | 60.0% | |
| AGGAGGCTTGCAAGGGAGGA+AGG | - | tig0028540:1774-1793 | Msa1438310:intron | 60.0% | |
| AGGCTTGCAAGGGAGGAAGG+TGG | - | tig0028540:1777-1796 | Msa1438310:intron | 60.0% | |
| AAGGGATGAAGCGGCTAGGG+AGG | - | tig0028540:1818-1837 | Msa1438310:intron | 60.0% | |
| TGTGCATGCGGCGGTAAGTG+AGG | - | tig0028540:2283-2302 | Msa1438310:CDS | 60.0% | |
| GCGGCGGTAAGTGAGGTTGA+TGG | - | tig0028540:2290-2309 | Msa1438310:CDS | 60.0% | |
| TTCTATCCGAAGACGGGGGC+TGG | - | tig0028540:3599-3618 | Msa1438310:CDS | 60.0% | |
| AGACAACCAGCCCCCGTCTT+CGG | + | tig0028540:3608-3627 | None:intergenic | 60.0% | |
| ! | TAAAGGGAGGGCTAGTGGCG+AGG | - | tig0028540:3836-3855 | Msa1438310:CDS | 60.0% |
| CAAGGGAGGAAGGTGGTGCG+AGG | - | tig0028540:1784-1803 | Msa1438310:intron | 65.0% | |
| GGAGGAAGGTGGTGCGAGGT+GGG | - | tig0028540:1788-1807 | Msa1438310:intron | 65.0% | |
| GCTAGGGAGGCTGCTGAGGT+TGG | - | tig0028540:1831-1850 | Msa1438310:intron | 65.0% | |
| !!! | GGCCACGCCGTTTTTCTGCG+TGG | - | tig0028540:1938-1957 | Msa1438310:intron | 65.0% |
| GGGAGGAAGGTGGTGCGAGG+TGG | - | tig0028540:1787-1806 | Msa1438310:intron | 70.0% | |
| AGCGGCTAGGGAGGCTGCTG+AGG | - | tig0028540:1827-1846 | Msa1438310:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028540 | gene | 757 | 4387 | 757 | ID=Msa1438310;Name=Msa1438310 |
| tig0028540 | mRNA | 757 | 4387 | 757 | ID=Msa1438310-mRNA-1;Parent=Msa1438310;Name=Msa1438310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|0.66|1|4|20|784 |
| tig0028540 | exon | 757 | 860 | 757 | ID=Msa1438310-mRNA-1:exon:11190;Parent=Msa1438310-mRNA-1 |
| tig0028540 | exon | 1287 | 1346 | 1287 | ID=Msa1438310-mRNA-1:exon:11189;Parent=Msa1438310-mRNA-1 |
| tig0028540 | exon | 1445 | 1643 | 1445 | ID=Msa1438310-mRNA-1:exon:11188;Parent=Msa1438310-mRNA-1 |
| tig0028540 | exon | 2193 | 4387 | 2193 | ID=Msa1438310-mRNA-1:exon:11187;Parent=Msa1438310-mRNA-1 |
| tig0028540 | five_prime_UTR | 4205 | 4387 | 4205 | ID=Msa1438310-mRNA-1:five_prime_utr;Parent=Msa1438310-mRNA-1 |
| tig0028540 | CDS | 2193 | 4204 | 2193 | ID=Msa1438310-mRNA-1:cds;Parent=Msa1438310-mRNA-1 |
| tig0028540 | CDS | 1445 | 1643 | 1445 | ID=Msa1438310-mRNA-1:cds;Parent=Msa1438310-mRNA-1 |
| tig0028540 | CDS | 1287 | 1346 | 1287 | ID=Msa1438310-mRNA-1:cds;Parent=Msa1438310-mRNA-1 |
| tig0028540 | CDS | 777 | 860 | 777 | ID=Msa1438310-mRNA-1:cds;Parent=Msa1438310-mRNA-1 |
| tig0028540 | three_prime_UTR | 757 | 776 | 757 | ID=Msa1438310-mRNA-1:three_prime_utr;Parent=Msa1438310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
