AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530210 MtrunA17_Chr4g0003561 97.581 372 9 0 177 548 71 442 0.0 766
Msa0530210 MtrunA17_Chr4g0003101 95.954 173 7 0 1 173 1 173 1.27e-91 307
Msa0530210 MtrunA17_Chr4g0070551 34.917 421 234 12 161 547 206 620 3.67e-63 218
Msa0530210 MtrunA17_Chr5g0417871 33.838 396 225 11 161 527 58 445 4.15e-59 204
Msa0530210 MtrunA17_Chr6g0455571 34.783 345 206 7 180 509 114 454 7.06e-58 201
Msa0530210 MtrunA17_Chr4g0061781 34.704 389 210 11 149 516 97 462 1.26e-57 200
Msa0530210 MtrunA17_Chr4g0042711 33.515 367 218 9 181 527 97 457 2.18e-56 197
Msa0530210 MtrunA17_Chr2g0307971 33.420 386 224 10 170 529 100 478 2.81e-56 197
Msa0530210 MtrunA17_Chr4g0008451 34.943 352 210 9 178 516 229 574 1.93e-55 197
Msa0530210 MtrunA17_Chr5g0436321 35.362 345 204 8 181 512 161 499 8.33e-55 194
Msa0530210 MtrunA17_Chr3g0129981 31.266 403 243 11 151 535 94 480 3.49e-51 183
Msa0530210 MtrunA17_Chr5g0426591 32.708 373 220 12 178 527 108 472 1.88e-50 181
Msa0530210 MtrunA17_Chr3g0132371 31.026 419 265 12 102 509 71 476 2.72e-50 181
Msa0530210 MtrunA17_Chr5g0399311 31.751 337 201 7 181 499 124 449 9.58e-49 176
Msa0530210 MtrunA17_Chr3g0077321 30.769 377 225 9 164 509 127 498 4.94e-48 175
Msa0530210 MtrunA17_Chr4g0056061 31.953 338 199 8 181 499 108 433 7.15e-48 174
Msa0530210 MtrunA17_Chr3g0143821 31.006 358 192 10 182 503 112 450 2.48e-46 171
Msa0530210 MtrunA17_Chr3g0123521 29.363 361 213 9 170 494 132 486 3.28e-45 167
Msa0530210 MtrunA17_Chr5g0424241 31.742 356 210 8 182 509 158 508 4.90e-45 167
Msa0530210 MtrunA17_Chr1g0160781 31.217 378 216 10 180 523 148 515 8.10e-45 166
Msa0530210 MtrunA17_Chr4g0043911 32.123 358 210 10 180 509 149 501 1.45e-44 166
Msa0530210 MtrunA17_Chr1g0204121 30.318 409 244 14 169 545 76 475 4.30e-44 163
Msa0530210 MtrunA17_Chr3g0132951 31.183 372 193 11 177 495 96 457 1.42e-43 162
Msa0530210 MtrunA17_Chr5g0412251 28.571 434 243 12 172 545 76 502 9.62e-43 159
Msa0530210 MtrunA17_Chr2g0284071 29.508 366 205 10 180 494 214 577 1.37e-39 152
Msa0530210 MtrunA17_Chr1g0204141 29.808 416 240 17 169 545 76 478 1.61e-39 150
Msa0530210 MtrunA17_Chr5g0448581 30.655 336 189 10 184 494 122 438 3.35e-39 150
Msa0530210 MtrunA17_Chr2g0305491 63.359 131 46 2 1 130 1 130 5.42e-39 153
Msa0530210 MtrunA17_Chr8g0346991 56.303 119 49 2 25 141 21 138 3.39e-34 138
Msa0530210 MtrunA17_Chr4g0003681 46.893 177 46 5 368 544 1 129 8.16e-34 124
Msa0530210 MtrunA17_Chr4g0075311 29.650 371 198 12 181 494 164 528 2.58e-33 134
Msa0530210 MtrunA17_Chr3g0087291 27.062 388 249 12 184 544 176 556 4.29e-33 133
Msa0530210 MtrunA17_Chr8g0384811 79.452 73 12 1 312 384 1 70 5.87e-32 117
Msa0530210 MtrunA17_Chr4g0010511 29.275 345 204 11 184 504 236 564 6.45e-30 124
Msa0530210 MtrunA17_Chr1g0146501 25.333 300 197 10 180 455 89 385 1.95e-18 89.0
Msa0530210 MtrunA17_Chr3g0127811 25.081 307 180 12 180 457 62 347 1.85e-17 85.1
Msa0530210 MtrunA17_Chr2g0298881 23.077 403 252 13 150 544 14 366 6.51e-17 82.8
Msa0530210 MtrunA17_Chr4g0002361 24.695 328 214 7 180 499 85 387 7.43e-17 82.8
Msa0530210 MtrunA17_Chr7g0220381 24.590 305 199 9 180 458 97 396 4.21e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530210 AT1G52630.1 76.408 373 86 1 176 548 69 439 0.0 622
Msa0530210 AT1G52630.2 75.637 353 84 1 196 548 1 351 0.0 584
Msa0530210 AT3G02250.1 33.803 355 210 8 180 516 105 452 2.87e-60 207
Msa0530210 AT5G35570.1 32.921 404 233 11 174 545 244 641 1.35e-58 206
Msa0530210 AT5G15740.1 33.333 354 211 9 181 516 106 452 4.03e-57 199
Msa0530210 AT3G54100.1 33.596 381 227 10 180 540 221 595 3.84e-56 199
Msa0530210 AT1G38065.2 31.265 419 225 10 181 548 26 432 4.40e-56 195
Msa0530210 AT1G38065.1 31.265 419 225 10 181 548 36 442 5.84e-56 195
Msa0530210 AT5G01100.1 34.973 366 215 10 158 509 195 551 1.04e-55 198
Msa0530210 AT1G38131.1 31.265 419 225 10 181 548 155 561 6.58e-55 195
Msa0530210 AT1G14020.1 34.104 346 204 8 181 509 91 429 9.50e-55 192
Msa0530210 AT2G37980.1 35.227 352 209 8 174 512 219 564 1.03e-54 195
Msa0530210 AT1G22460.1 34.181 354 214 9 178 518 157 504 1.21e-54 194
Msa0530210 AT2G03280.1 33.623 345 207 8 181 509 88 426 9.16e-54 189
Msa0530210 AT3G26370.1 30.829 386 233 9 142 494 110 494 1.29e-51 185
Msa0530210 AT2G03280.2 31.183 372 207 9 181 509 88 453 7.00e-48 174
Msa0530210 AT5G64600.1 28.947 456 288 12 97 535 47 483 3.97e-47 172
Msa0530210 AT1G04910.1 30.392 408 245 13 169 545 76 475 3.31e-46 170
Msa0530210 AT1G35510.1 28.967 397 246 8 144 512 125 513 2.32e-45 168
Msa0530210 AT1G15290.1 57.333 150 59 3 1 145 1 150 2.69e-45 172
Msa0530210 AT1G15290.2 57.333 150 59 3 1 145 1 150 3.06e-45 172
Msa0530210 AT1G76270.1 30.982 326 201 7 184 494 109 425 7.53e-45 167
Msa0530210 AT4G38390.1 30.205 341 194 7 180 494 122 444 8.46e-45 166
Msa0530210 AT2G01480.2 32.162 370 216 10 180 520 153 516 8.93e-45 166
Msa0530210 AT2G01480.1 32.591 359 207 10 180 509 153 505 1.04e-44 166
Msa0530210 AT5G65470.1 30.749 374 194 10 177 495 81 444 1.06e-44 165
Msa0530210 AT1G14970.3 31.450 407 234 13 177 544 6 406 1.10e-44 163
Msa0530210 AT1G14970.2 31.450 407 234 13 177 544 32 432 1.61e-44 163
Msa0530210 AT1G14970.1 31.373 408 235 13 177 545 152 553 9.79e-44 164
Msa0530210 AT4G16650.2 31.362 389 237 12 181 545 122 504 1.93e-43 162
Msa0530210 AT4G16650.1 31.362 389 237 12 181 545 122 504 1.93e-43 162
Msa0530210 AT1G20550.1 30.000 340 196 8 184 499 112 433 1.12e-42 160
Msa0530210 AT4G24530.1 29.032 372 201 9 177 495 97 458 1.40e-42 160
Msa0530210 AT4G28080.1 54.444 180 69 4 1 169 1 178 6.92e-42 162
Msa0530210 AT1G01320.2 51.748 143 66 2 25 167 21 160 3.23e-37 148
Msa0530210 AT1G01320.1 51.748 143 66 2 25 167 21 160 3.42e-37 148
Msa0530210 AT1G01320.3 51.748 143 66 2 25 167 21 160 3.58e-37 148
Msa0530210 AT5G63390.1 28.101 395 251 11 180 547 163 551 4.16e-36 142
Msa0530210 AT1G29200.4 29.175 473 250 15 144 546 38 495 5.40e-36 140
Msa0530210 AT1G29200.1 29.175 473 250 15 144 546 38 495 5.40e-36 140
Msa0530210 AT1G11990.1 30.380 316 193 8 161 452 168 480 9.55e-36 141
Msa0530210 AT1G29200.2 29.175 473 250 15 144 546 154 611 1.81e-35 140
Msa0530210 AT1G62330.1 27.132 387 218 12 182 509 222 603 3.34e-34 137
Msa0530210 AT1G29200.3 29.302 430 224 13 187 546 2 421 1.37e-32 130
Msa0530210 AT1G11990.2 27.762 353 191 9 161 452 153 502 2.31e-31 129
Msa0530210 AT3G07900.1 25.126 398 267 11 173 544 180 572 8.99e-30 124
Msa0530210 AT2G44500.1 26.166 386 256 11 184 544 180 561 1.07e-29 123
Msa0530210 AT3G26370.2 30.196 255 153 6 142 372 110 363 2.84e-29 120
Msa0530210 AT3G30300.2 25.484 310 192 10 178 457 97 397 1.18e-19 93.2
Msa0530210 AT3G30300.1 25.484 310 192 10 178 457 97 397 1.18e-19 93.2
Msa0530210 AT3G03810.2 26.861 309 185 11 180 457 88 386 1.97e-19 92.4
Msa0530210 AT3G03810.1 26.861 309 185 11 180 457 88 386 1.97e-19 92.4
Msa0530210 AT2G44500.2 27.826 230 154 6 184 405 180 405 6.71e-18 86.7
Msa0530210 AT3G21190.1 22.082 317 199 7 179 480 88 371 3.86e-12 68.9
Msa0530210 AT1G51630.1 23.718 312 190 10 179 475 89 367 7.07e-11 64.7

Find 145 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATATGGCTACATATTT+TGG 0.025223 4_1:-4242392 Msa0530210:CDS
GCGAATTCAAGTTGTGATTT+TGG 0.138877 4_1:-4242178 Msa0530210:exon
TGCTCTTGAAATCTTGAAAA+AGG 0.184485 4_1:-4248753 Msa0530210:five_prime_UTR
AATTAAATTAATAAGTTATT+AGG 0.196999 4_1:+4242116 None:intergenic
GCCTCTCCTTGTTGCTAATA+AGG 0.208781 4_1:+4248782 None:intergenic
TCCTCCTTAATTAAGGTTAA+AGG 0.227747 4_1:-4247928 Msa0530210:intron
TACACACGTGCGAAGGTTAT+TGG 0.230875 4_1:-4245646 Msa0530210:CDS
TTCTTAGTAGACATGGCTTT+AGG 0.241111 4_1:+4247872 None:intergenic
TTCTTGGGCTTTGATGAGTC+TGG 0.246046 4_1:+4245570 None:intergenic
AACCATACCTGTCTCTTCTT+TGG 0.248843 4_1:+4244366 None:intergenic
CGCTTTCAACATAATCAAAT+TGG 0.249669 4_1:+4244441 None:intergenic
ACGAAGGTGGAGAGACAAAA+AGG 0.297065 4_1:+4242790 None:intergenic
TCTTAGTAGACATGGCTTTA+GGG 0.301222 4_1:+4247873 None:intergenic
ATAAAGAATAGTTTGTAAAA+TGG 0.314149 4_1:+4248090 None:intergenic
GGCTTTACTTTCCAGGGGTT+TGG 0.317771 4_1:+4242841 None:intergenic
TCTCTTCTTTGGGACATTGC+TGG 0.318087 4_1:+4244377 None:intergenic
TAAGACAGAGAAGAAGAAAA+AGG 0.321667 4_1:-4248468 Msa0530210:CDS
TGCTGCTTCTACGGCTTTGA+TGG 0.329071 4_1:+4242709 None:intergenic
TGGGCCTGCTATGTTACGTT+TGG 0.331710 4_1:+4245590 None:intergenic
ATATATCCATTGGTTTCTAT+TGG 0.335323 4_1:+4245129 None:intergenic
CATTGAGAAGTTGATGCTTT+TGG 0.338944 4_1:-4241808 Msa0530210:three_prime_UTR
GCTTAGAGGCTTTACTTTCC+AGG 0.338954 4_1:+4242834 None:intergenic
AGTATTAAAGCTGTCTCATT+AGG 0.341567 4_1:+4242608 None:intergenic
TGGAAATACAAAAGCTGCTT+TGG 0.345171 4_1:-4242441 Msa0530210:CDS
ACCATACCTGTCTCTTCTTT+GGG 0.347769 4_1:+4244367 None:intergenic
TTGTTCTCACAACACCCTTT+TGG 0.350764 4_1:+4248534 None:intergenic
ATTAACCTCACAAGGTCTTA+AGG 0.354632 4_1:-4242285 Msa0530210:CDS
TATCAATAGTGATTCCTATA+TGG 0.363163 4_1:-4242405 Msa0530210:CDS
AGTTTGAAGTGGCTTCATAT+TGG 0.378884 4_1:-4244900 Msa0530210:CDS
TGATTCACAAATTGTATTGA+AGG 0.386441 4_1:-4248271 Msa0530210:intron
GGGCCTGCTATGTTACGTTT+GGG 0.387280 4_1:+4245591 None:intergenic
CCGGAGAGTTAGCCCGCATT+TGG 0.388307 4_1:-4242658 Msa0530210:CDS
TTGCTACAGTCCACTGGAAC+TGG 0.389219 4_1:+4244473 None:intergenic
TATTGCATCTAGAAGCTTAG+AGG 0.395829 4_1:+4242820 None:intergenic
CTTATTAATTTAATTCTTCA+CGG 0.396495 4_1:-4242108 Msa0530210:three_prime_UTR
TTAACCTCACAAGGTCTTAA+GGG 0.400223 4_1:-4242284 Msa0530210:CDS
AATACAATTTGTGAATCATA+AGG 0.403344 4_1:+4248276 None:intergenic
TCTTGGGCTTTGATGAGTCT+GGG 0.411100 4_1:+4245571 None:intergenic
TTTAATTTGATCACCAATGA+AGG 0.411742 4_1:-4242028 Msa0530210:three_prime_UTR
TGTTCTTTGGTAGTGCCAAA+AGG 0.415534 4_1:-4248549 Msa0530210:five_prime_UTR
ATAGCCTGCACAACAAAATT+CGG 0.418569 4_1:-4245618 Msa0530210:CDS
CGACGCCGGCGCTCCGACAT+TGG 0.430543 4_1:+4245468 None:intergenic
TTGTGCTTCACTTTGAAAGA+AGG 0.432856 4_1:-4242080 Msa0530210:three_prime_UTR
CCCAAAATATGTAGCCATAT+AGG 0.436799 4_1:+4242391 None:intergenic
CTCCATTCGGTGTTACGGGT+GGG 0.448376 4_1:+4245508 None:intergenic
CCAAATGCGGGCTAACTCTC+CGG 0.456498 4_1:+4242658 None:intergenic
TATGAAGCCACTTCAAACTT+TGG 0.457575 4_1:+4244904 None:intergenic
TGGCTGTATGCAACCATGTC+AGG 0.458079 4_1:+4242761 None:intergenic
TAGTGCTACTGCTGCTTCTA+CGG 0.462280 4_1:+4242700 None:intergenic
GTTCTTTGGTAGTGCCAAAA+GGG 0.464721 4_1:-4248548 Msa0530210:five_prime_UTR
TAACACCGAATGGAGAAAAC+CGG 0.468546 4_1:-4245500 Msa0530210:CDS
GATGAGTTTGTCGCGGGAAG+AGG 0.468853 4_1:-4242224 Msa0530210:CDS
CTTAGAGGCTTTACTTTCCA+GGG 0.474140 4_1:+4242835 None:intergenic
ACATATAATACGACTTGCAT+TGG 0.485657 4_1:-4241916 Msa0530210:three_prime_UTR
AAGCCACTTCAAACTTTGGC+AGG 0.486965 4_1:+4244908 None:intergenic
TAGAAACTACATCCCTTCAT+TGG 0.488643 4_1:+4242015 None:intergenic
CAGGTGAAAGGCCTGTGTAT+TGG 0.490038 4_1:+4242735 None:intergenic
AAAGCCATGTCTACTAAGAA+TGG 0.491079 4_1:-4247869 Msa0530210:CDS
AAGAGTTGATGCAAGCCCTC+TGG 0.492068 4_1:-4242259 Msa0530210:CDS
CGAATGGAGAAAACCGGGTC+GGG 0.501472 4_1:-4245494 Msa0530210:CDS
ACTTGATGTGAGGAAGCTAT+TGG 0.502522 4_1:-4248132 Msa0530210:CDS
ATCCACTCTGATATATCCAT+TGG 0.502847 4_1:+4245119 None:intergenic
GGCGGCTGGAGACGGTCTGA+TGG 0.503439 4_1:-4242546 Msa0530210:CDS
TCTACGGCTTTGATGGAAGC+AGG 0.503951 4_1:+4242716 None:intergenic
CCCACGTTGTCTCCAAATGC+GGG 0.507426 4_1:+4242646 None:intergenic
TCAATGAATATTGCAAGACT+TGG 0.507961 4_1:-4241856 Msa0530210:three_prime_UTR
CGGGCTAACTCTCCGGTCCA+TGG 0.508499 4_1:+4242665 None:intergenic
AGAAGCAGCAGTAGCACTAG+TGG 0.510170 4_1:-4242696 Msa0530210:CDS
TCTCCATTCGGTGTTACGGG+TGG 0.513307 4_1:+4245507 None:intergenic
CCGACATTGGTGACCCGACC+CGG 0.514672 4_1:+4245481 None:intergenic
AAAGGCCTGTGTATTGGCAC+TGG 0.516261 4_1:+4242741 None:intergenic
TTCATTGAGAAGGCTAGACT+TGG 0.517613 4_1:+4242484 None:intergenic
CATATAATACGACTTGCATT+GGG 0.517617 4_1:-4241915 Msa0530210:three_prime_UTR
AGCTGTCTCATTAGGTGTGA+GGG 0.519842 4_1:+4242616 None:intergenic
TGAAGTCTTCTTCATTGAGA+AGG 0.520809 4_1:+4242474 None:intergenic
TCCCACGTTGTCTCCAAATG+CGG 0.522762 4_1:+4242645 None:intergenic
TACTTCATGCAACATATGAA+TGG 0.523838 4_1:-4244545 Msa0530210:CDS
GAAGACTTCACAAGCATGCA+TGG 0.527484 4_1:-4242461 Msa0530210:CDS
TTCCAGTGGACTGTAGCAAA+AGG 0.528586 4_1:-4244469 Msa0530210:CDS
GGTCACCAATGTCGGAGCGC+CGG 0.533555 4_1:-4245473 Msa0530210:CDS
TGTCCTGCCAAAGTTTGAAG+TGG 0.536065 4_1:-4244911 Msa0530210:CDS
CATCTCTTCGCATCTGATTG+AGG 0.536395 4_1:+4245085 None:intergenic
GATGTAGTTTCTATCTATTG+AGG 0.537133 4_1:-4242005 Msa0530210:three_prime_UTR
AAACTATTCTTTATCTCATG+AGG 0.537567 4_1:-4248081 Msa0530210:intron
CACAGAGATGAGTTTGTCGC+GGG 0.538917 4_1:-4242230 Msa0530210:CDS
ATCAGAGTGGATTGCTATGG+AGG 0.545667 4_1:-4245108 Msa0530210:CDS
TCTTTGTCAAGCTTGTTACA+AGG 0.547347 4_1:-4242876 Msa0530210:CDS
TCAGACCGTCTCCAGCCGCC+AGG 0.548597 4_1:+4242549 None:intergenic
TTCTCTTGTAGACATTATTG+TGG 0.549228 4_1:-4248304 Msa0530210:CDS
TTAATTTGATCACCAATGAA+GGG 0.554430 4_1:-4242027 Msa0530210:three_prime_UTR
TATATCAGAGTGGATTGCTA+TGG 0.554764 4_1:-4245111 Msa0530210:CDS
CTTTGATGGAAGCAGGTGAA+AGG 0.556941 4_1:+4242723 None:intergenic
AAGCCCAAACGTAACATAGC+AGG 0.558182 4_1:-4245594 Msa0530210:CDS
GTTACGTCTCGCCAAACCCC+TGG 0.559050 4_1:-4242852 Msa0530210:CDS
AGCCCACCCGTAACACCGAA+TGG 0.560880 4_1:-4245510 Msa0530210:CDS
ATATACCTGGCGGCTGGAGA+CGG 0.562401 4_1:-4242554 Msa0530210:CDS
TGTCTACTAAGAATGGTTGA+AGG 0.563623 4_1:-4247862 Msa0530210:intron
GCCAGGTATATATTAGTGCT+TGG 0.563938 4_1:+4242566 None:intergenic
CAATGTCCCAAAGAAGAGAC+AGG 0.566201 4_1:-4244373 Msa0530210:intron
TCAACCATTCTTAGTAGACA+TGG 0.567302 4_1:+4247865 None:intergenic
ACAATAATGTCTACAAGAGA+AGG 0.569410 4_1:+4248306 None:intergenic
CCGGGTCGGGTCACCAATGT+CGG 0.572438 4_1:-4245481 Msa0530210:CDS
ATACGACTTGCATTGGGAGT+AGG 0.574155 4_1:-4241909 Msa0530210:three_prime_UTR
TTGTGATTGCAGTTCTGTGA+CGG 0.577211 4_1:-4244967 Msa0530210:intron
GAAGCTATTGGCTGTGAAGG+TGG 0.592150 4_1:-4248120 Msa0530210:CDS
GTGGAGAGAAAACCATGGAC+CGG 0.593959 4_1:-4242677 Msa0530210:CDS
ACTAATATATACCTGGCGGC+TGG 0.598811 4_1:-4242560 Msa0530210:CDS
CTTCATATTGGAATGAAACA+AGG 0.599962 4_1:-4244888 Msa0530210:intron
GTGACGGTGTGGGAATCGCT+CGG 0.600559 4_1:-4244951 Msa0530210:CDS
ATCTCTGTGAACCTTCCAGA+GGG 0.601084 4_1:+4242244 None:intergenic
TTTGCTGAATTAACCTCACA+AGG 0.601726 4_1:-4242293 Msa0530210:CDS
AAGCTGTCTCATTAGGTGTG+AGG 0.604927 4_1:+4242615 None:intergenic
GCTCTACCAATAGAAACCAA+TGG 0.606300 4_1:-4245135 Msa0530210:CDS
TTAGAGGCTTTACTTTCCAG+GGG 0.606600 4_1:+4242836 None:intergenic
ATGGCCCCAAAATCAGGGAA+AGG 0.608175 4_1:-4248506 Msa0530210:CDS
GCAGCAATGAGAGCTTTCAA+AGG 0.610752 4_1:-4242350 Msa0530210:CDS
GTGGACTGTAGCAAAAGGAA+AGG 0.612687 4_1:-4244464 Msa0530210:CDS
ACCAAGCACTAATATATACC+TGG 0.616374 4_1:-4242567 Msa0530210:CDS
ATTGCAGTTCTGTGACGGTG+TGG 0.618261 4_1:-4244962 Msa0530210:intron
ACCTTATTAGCAACAAGGAG+AGG 0.618326 4_1:-4248783 Msa0530210:five_prime_UTR
TCACAGAGATGAGTTTGTCG+CGG 0.620694 4_1:-4242231 Msa0530210:CDS
TTCAAACCTTATTAGCAACA+AGG 0.620771 4_1:-4248788 Msa0530210:five_prime_UTR
GCTAGACTTGGTGAATATGT+TGG 0.624397 4_1:+4242496 None:intergenic
TACAGCCAGTGCCAATACAC+AGG 0.626069 4_1:-4242746 Msa0530210:CDS
GACGGTCTGATGGAAATCGA+AGG 0.631943 4_1:-4242536 Msa0530210:CDS
AGGTATATATTAGTGCTTGG+TGG 0.632326 4_1:+4242569 None:intergenic
CTGATAAGATACTTGATGTG+AGG 0.638400 4_1:-4248142 Msa0530210:CDS
AGTCGTCACAACATTACCAC+CGG 0.640669 4_1:-4244513 Msa0530210:CDS
GTTGATGCAAGCCCTCTGGA+AGG 0.644285 4_1:-4242255 Msa0530210:CDS
GCTGTCTCATTAGGTGTGAG+GGG 0.648299 4_1:+4242617 None:intergenic
TGTCAGGCTCAAAACGAAGG+TGG 0.649063 4_1:+4242777 None:intergenic
AAGCAACTACACACGTGCGA+AGG 0.649155 4_1:-4245653 Msa0530210:CDS
AACACCGAATGGAGAAAACC+GGG 0.650625 4_1:-4245499 Msa0530210:CDS
GCCCGCATTTGGAGACAACG+TGG 0.652907 4_1:-4242647 Msa0530210:CDS
CCGAATGGAGAAAACCGGGT+CGG 0.653117 4_1:-4245495 Msa0530210:CDS
CCATGTCAGGCTCAAAACGA+AGG 0.658835 4_1:+4242774 None:intergenic
TTGCAGTTCTGTGACGGTGT+GGG 0.660904 4_1:-4244961 Msa0530210:intron
GAGGAAGCTATTGGCTGTGA+AGG 0.666270 4_1:-4248123 Msa0530210:CDS
CATCTCTGTGAACCTTCCAG+AGG 0.668549 4_1:+4242243 None:intergenic
GCCCATAATCAAAACAAGAG+CGG 0.671925 4_1:-4245537 Msa0530210:CDS
AACAAAAGAACCAGTTCCAG+TGG 0.674201 4_1:-4244483 Msa0530210:CDS
CCCGCATTTGGAGACAACGT+GGG 0.675930 4_1:-4242646 Msa0530210:CDS
CACTAGTGGAGAGAAAACCA+TGG 0.717295 4_1:-4242682 Msa0530210:CDS
AACCAATGGATATATCAGAG+TGG 0.738312 4_1:-4245121 Msa0530210:CDS
AAGCACTAATATATACCTGG+CGG 0.757879 4_1:-4242564 Msa0530210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATTGATTTTTAAAAAT+TGG - chr4_1:4242418-4242437 Msa0530210:CDS 10.0%
!!! CTTTTGATTATTTAATTAAT+TGG - chr4_1:4242682-4242701 Msa0530210:CDS 10.0%
!! GTCAAAAAATAAATAAATAT+GGG + chr4_1:4243247-4243266 None:intergenic 10.0%
!! TGTCAAAAAATAAATAAATA+TGG + chr4_1:4243248-4243267 None:intergenic 10.0%
!!! TAAATTTTTGATATATTCAA+TGG - chr4_1:4243428-4243447 Msa0530210:intron 10.0%
!! TTATTCTTATAGTATATATT+TGG - chr4_1:4243885-4243904 Msa0530210:intron 10.0%
!!! TAACATAAAAATATCATTTT+CGG - chr4_1:4244042-4244061 Msa0530210:intron 10.0%
!!! TAAATAATTTAACTTATGTT+TGG - chr4_1:4244443-4244462 Msa0530210:CDS 10.0%
!!! AATTGTTATTTTTTTTGTTA+GGG + chr4_1:4246866-4246885 None:intergenic 10.0%
!!! AAATTGTTATTTTTTTTGTT+AGG + chr4_1:4246867-4246886 None:intergenic 10.0%
!!! AATTTTTTATGTCTTTTATT+AGG - chr4_1:4247083-4247102 Msa0530210:intron 10.0%
!!! ATTTTTTATGTCTTTTATTA+GGG - chr4_1:4247084-4247103 Msa0530210:intron 10.0%
!! AATTATAATGAAATTATGAT+AGG + chr4_1:4247452-4247471 None:intergenic 10.0%
!! AAATTATAGAATAAAATAGA+AGG - chr4_1:4247650-4247669 Msa0530210:intron 10.0%
!!! ATAAAGAATAGTTTGTAAAA+TGG + chr4_1:4242556-4242575 None:intergenic 15.0%
!! TAAAATAGAGTAAAAACAAA+TGG - chr4_1:4243158-4243177 Msa0530210:intron 15.0%
!! AAAAGTAGATAAACAAATAT+GGG + chr4_1:4243280-4243299 None:intergenic 15.0%
!! TAAAAGTAGATAAACAAATA+TGG + chr4_1:4243281-4243300 None:intergenic 15.0%
!! CATTAACATTTAAATACATA+AGG - chr4_1:4243404-4243423 Msa0530210:intron 15.0%
!!! ATGAATGATATTTTTAGATT+TGG - chr4_1:4243743-4243762 Msa0530210:intron 15.0%
!! ATGATTCAATAATTATTTAG+AGG + chr4_1:4243840-4243859 None:intergenic 15.0%
!! GTAACTTAACATAAAATATA+TGG - chr4_1:4243944-4243963 Msa0530210:intron 15.0%
!! TTAACATAAAATATATGGTT+AGG - chr4_1:4243949-4243968 Msa0530210:intron 15.0%
!! AAAAAATTTAATGACTTCTT+AGG + chr4_1:4244018-4244037 None:intergenic 15.0%
!!! AGAAGTCATTAAATTTTTTA+TGG - chr4_1:4244019-4244038 Msa0530210:intron 15.0%
!!! AACATAAAAATATCATTTTC+GGG - chr4_1:4244043-4244062 Msa0530210:intron 15.0%
!! ACTTGAAAAAATAAATTCAA+TGG - chr4_1:4244561-4244580 Msa0530210:CDS 15.0%
!! TAGATTATTAAGAGTTTAAT+TGG - chr4_1:4244880-4244899 Msa0530210:intron 15.0%
!! ATTTCAGTGTAAAAATATTA+TGG + chr4_1:4244924-4244943 None:intergenic 15.0%
!!! GTTATTTTTTATTCTTGAAA+TGG - chr4_1:4245481-4245500 Msa0530210:CDS 15.0%
!! CAAAATTTACATTAAATGAA+GGG + chr4_1:4246745-4246764 None:intergenic 15.0%
!! ACAAAATTTACATTAAATGA+AGG + chr4_1:4246746-4246765 None:intergenic 15.0%
!!! ATTGTTATTTTTTTTGTTAG+GGG + chr4_1:4246865-4246884 None:intergenic 15.0%
!!! TTTTTTATGTCTTTTATTAG+GGG - chr4_1:4247085-4247104 Msa0530210:intron 15.0%
!!! TTAACTACACAATTTTATTT+AGG + chr4_1:4247150-4247169 None:intergenic 15.0%
!!! TTATTCTATAATTTGTGATT+TGG + chr4_1:4247644-4247663 None:intergenic 15.0%
!! CTTATTAATTTAATTCTTCA+CGG - chr4_1:4248535-4248554 Msa0530210:five_prime_UTR 15.0%
!! AAAAAAAAAGAATAGAGAGA+AGG - chr4_1:4241825-4241844 Msa0530210:three_prime_UTR 20.0%
!! AAAAAAAAGAATAGAGAGAA+GGG - chr4_1:4241826-4241845 Msa0530210:three_prime_UTR 20.0%
!! AATACAATTTGTGAATCATA+AGG + chr4_1:4242370-4242389 None:intergenic 20.0%
!!! ATATTCTTTTTTTGTGCAAA+AGG - chr4_1:4242469-4242488 Msa0530210:CDS 20.0%
!!! TATTCTTTTTTTGTGCAAAA+GGG - chr4_1:4242470-4242489 Msa0530210:CDS 20.0%
!!! TTCATGGCTTATTTTTTTAT+AGG + chr4_1:4242992-4243011 None:intergenic 20.0%
!! TAAAAAAATAAGCCATGAAA+AGG - chr4_1:4242993-4243012 Msa0530210:intron 20.0%
!! TTAATTAGGAAAAAGGAAAA+AGG + chr4_1:4243219-4243238 None:intergenic 20.0%
!! AAATATGGGTATGTTTAATT+AGG + chr4_1:4243233-4243252 None:intergenic 20.0%
!! TATTCAATGGTTATTACTAT+TGG - chr4_1:4243441-4243460 Msa0530210:intron 20.0%
!!! ATAAATATGAACAAGTGTTT+TGG - chr4_1:4243556-4243575 Msa0530210:intron 20.0%
!! AATGTTTCAGCAAAAAATAA+AGG + chr4_1:4243624-4243643 None:intergenic 20.0%
!!! TTATTTTTTGCTGAAACATT+TGG - chr4_1:4243624-4243643 Msa0530210:intron 20.0%
!!! ACATAAAAATATCATTTTCG+GGG - chr4_1:4244044-4244063 Msa0530210:intron 20.0%
!!! AATATAGTCATTTTCATTTG+CGG - chr4_1:4244275-4244294 Msa0530210:intron 20.0%
!! TTGAATATATAAACATGTGA+TGG + chr4_1:4244420-4244439 None:intergenic 20.0%
!! AGATATTTGATATTTGAGTA+AGG + chr4_1:4244781-4244800 None:intergenic 20.0%
!! TATAATTACTTCCTTAAGAA+TGG - chr4_1:4246626-4246645 Msa0530210:intron 20.0%
!!! TTGTTATTTTTTTTGTTAGG+GGG + chr4_1:4246864-4246883 None:intergenic 20.0%
!!! CAACTTTTTGTAAAGATAAA+AGG - chr4_1:4246962-4246981 Msa0530210:intron 20.0%
!!! TTTTTATGTCTTTTATTAGG+GGG - chr4_1:4247086-4247105 Msa0530210:intron 20.0%
!!! CTTATAAGAGTAATCTTTTA+GGG - chr4_1:4247207-4247226 Msa0530210:intron 20.0%
!! AAGTGTTAAAAGACTATATT+AGG - chr4_1:4247378-4247397 Msa0530210:intron 20.0%
!! ATTTCTCATAAGACTAATAA+TGG - chr4_1:4247593-4247612 Msa0530210:intron 20.0%
!! ATTTTGTGATGAAAGAAGAT+AGG + chr4_1:4241928-4241947 None:intergenic 25.0%
! TGTTGTGAGAACAAAAAAAA+TGG - chr4_1:4242118-4242137 Msa0530210:three_prime_UTR 25.0%
!!! AATTTTCATTTTTTCAGCTG+TGG - chr4_1:4242312-4242331 Msa0530210:CDS 25.0%
! TGATTCACAAATTGTATTGA+AGG - chr4_1:4242372-4242391 Msa0530210:CDS 25.0%
! AAACTATTCTTTATCTCATG+AGG - chr4_1:4242562-4242581 Msa0530210:CDS 25.0%
! TGCATAAAAATTTCAACACA+TGG + chr4_1:4242890-4242909 None:intergenic 25.0%
! TTTATTGTATCTTAGCAAAG+TGG - chr4_1:4242929-4242948 Msa0530210:intron 25.0%
! TTATTGTATCTTAGCAAAGT+GGG - chr4_1:4242930-4242949 Msa0530210:intron 25.0%
! TTTGAAAACAGAACACAAAA+TGG + chr4_1:4243074-4243093 None:intergenic 25.0%
! GGTATGTTTAATTAGGAAAA+AGG + chr4_1:4243226-4243245 None:intergenic 25.0%
! GTTAATATTGCCTATAGTTA+TGG + chr4_1:4243385-4243404 None:intergenic 25.0%
! ATGGTTATTACTATTGGTAA+TGG - chr4_1:4243447-4243466 Msa0530210:intron 25.0%
!! TACTGGTACTCTTTATTTAT+AGG - chr4_1:4243581-4243600 Msa0530210:intron 25.0%
!! ACATTTGGTATCTTTCTTTT+TGG - chr4_1:4243639-4243658 Msa0530210:intron 25.0%
!!! TCTTTTTGGTAACAAACATT+TGG - chr4_1:4243653-4243672 Msa0530210:intron 25.0%
! CAAATCTTATGAATCATACA+TGG + chr4_1:4243864-4243883 None:intergenic 25.0%
!! CATAAAAATATCATTTTCGG+GGG - chr4_1:4244045-4244064 Msa0530210:intron 25.0%
!! AATTTAACTTATGTTTGGAG+CGG - chr4_1:4244448-4244467 Msa0530210:CDS 25.0%
! CCTAATGTAAGTTGTATTTA+CGG - chr4_1:4244811-4244830 Msa0530210:intron 25.0%
! NNNNNNNNNGGTCAGTTAGT+TGG - chr4_1:4245383-4245402 Msa0530210:intron 25.0%
!! TTTTCTGAATCAACCTTAAT+TGG - chr4_1:4245435-4245454 Msa0530210:intron 25.0%
!!! ATATATCCATTGGTTTCTAT+TGG + chr4_1:4245517-4245536 None:intergenic 25.0%
!! GCAATTTTTAATCGAAATAC+TGG - chr4_1:4245815-4245834 Msa0530210:intron 25.0%
! TTAATCGAAATACTGGTAAT+TGG - chr4_1:4245822-4245841 Msa0530210:intron 25.0%
! CTTATCTGAACTATACTAAA+AGG - chr4_1:4246020-4246039 Msa0530210:intron 25.0%
! ATACTAAAAGGATTTCTGTA+TGG - chr4_1:4246032-4246051 Msa0530210:intron 25.0%
!!! ATTTGTGTTTTAACAGAGAT+GGG + chr4_1:4246232-4246251 None:intergenic 25.0%
!!! TATTTGTGTTTTAACAGAGA+TGG + chr4_1:4246233-4246252 None:intergenic 25.0%
! TCTGTTTGAATCAATAGTAT+CGG + chr4_1:4246357-4246376 None:intergenic 25.0%
!!! TATTGATTCAAACAGATTCA+TGG - chr4_1:4246361-4246380 Msa0530210:intron 25.0%
! AGAAAAAGAAAAAAGATGCA+GGG + chr4_1:4246404-4246423 None:intergenic 25.0%
! AAGAAAAAGAAAAAAGATGC+AGG + chr4_1:4246405-4246424 None:intergenic 25.0%
! TATTATTTCAACAACCAAGT+TGG + chr4_1:4246505-4246524 None:intergenic 25.0%
! TTGCTTATAAACCATTCTTA+AGG + chr4_1:4246640-4246659 None:intergenic 25.0%
! AAAAAATACTCCATCTATCT+TGG - chr4_1:4246658-4246677 Msa0530210:intron 25.0%
! ATATTTCATTCCAAGATAGA+TGG + chr4_1:4246671-4246690 None:intergenic 25.0%
!!! CGCAACTTTTTAAAAGTTAA+GGG + chr4_1:4246834-4246853 None:intergenic 25.0%
!!! TCGCAACTTTTTAAAAGTTA+AGG + chr4_1:4246835-4246854 None:intergenic 25.0%
!! CAACGTTTTGTAAAATTAAG+GGG + chr4_1:4246892-4246911 None:intergenic 25.0%
!! GCAACGTTTTGTAAAATTAA+GGG + chr4_1:4246893-4246912 None:intergenic 25.0%
!! TGCAACGTTTTGTAAAATTA+AGG + chr4_1:4246894-4246913 None:intergenic 25.0%
! CATATTTCCATATAGATAGA+GGG - chr4_1:4247058-4247077 Msa0530210:intron 25.0%
!! GCTTATAAGAGTAATCTTTT+AGG - chr4_1:4247206-4247225 Msa0530210:intron 25.0%
!! TTTGAAATGTTTGCTAATAG+TGG - chr4_1:4247265-4247284 Msa0530210:intron 25.0%
!! TTGAAATGTTTGCTAATAGT+GGG - chr4_1:4247266-4247285 Msa0530210:intron 25.0%
!!! TTTTAATTCCAGTTATTTCC+AGG - chr4_1:4247335-4247354 Msa0530210:intron 25.0%
!! TTTAATTCCAGTTATTTCCA+GGG - chr4_1:4247336-4247355 Msa0530210:intron 25.0%
! TCAAATGTGATATTAAATGC+TGG - chr4_1:4247539-4247558 Msa0530210:intron 25.0%
! GAAATTGAATATTACAACCA+CGG + chr4_1:4247578-4247597 None:intergenic 25.0%
! TTACAACTGTGAATTATTTC+TGG + chr4_1:4247691-4247710 None:intergenic 25.0%
! AAATAATTCACAGTTGTAAC+TGG - chr4_1:4247692-4247711 Msa0530210:intron 25.0%
! TATCAATAGTGATTCCTATA+TGG - chr4_1:4248238-4248257 Msa0530210:intron 25.0%
!!! TTTAATTTGATCACCAATGA+AGG - chr4_1:4248615-4248634 Msa0530210:five_prime_UTR 25.0%
!! TTAATTTGATCACCAATGAA+GGG - chr4_1:4248616-4248635 Msa0530210:five_prime_UTR 25.0%
TTCAAACCTTATTAGCAACA+AGG - chr4_1:4241855-4241874 Msa0530210:three_prime_UTR 30.0%
TGCTCTTGAAATCTTGAAAA+AGG - chr4_1:4241890-4241909 Msa0530210:three_prime_UTR 30.0%
! GAATTGCTCTTTTTGTTCTT+TGG - chr4_1:4242081-4242100 Msa0530210:three_prime_UTR 30.0%
! TTTTTCCTTTCCCTGATTTT+GGG + chr4_1:4242145-4242164 None:intergenic 30.0%
TAAGACAGAGAAGAAGAAAA+AGG - chr4_1:4242175-4242194 Msa0530210:exon 30.0%
ACAATAATGTCTACAAGAGA+AGG + chr4_1:4242340-4242359 None:intergenic 30.0%
TTCTCTTGTAGACATTATTG+TGG - chr4_1:4242339-4242358 Msa0530210:CDS 30.0%
CAAAAGCTAAGTACTTAGTT+TGG + chr4_1:4242668-4242687 None:intergenic 30.0%
ATTCTCTTCCTCCTTAATTA+AGG - chr4_1:4242708-4242727 Msa0530210:CDS 30.0%
TCCTCCTTAATTAAGGTTAA+AGG - chr4_1:4242715-4242734 Msa0530210:CDS 30.0%
ACCTTTAACCTTAATTAAGG+AGG + chr4_1:4242719-4242738 None:intergenic 30.0%
CTGACCTTTAACCTTAATTA+AGG + chr4_1:4242722-4242741 None:intergenic 30.0%
! ACTTGAAATTGACCTTTTCA+TGG + chr4_1:4243008-4243027 None:intergenic 30.0%
!! AGTGCTGATTGAATAACAAA+CGG - chr4_1:4243300-4243319 Msa0530210:intron 30.0%
TGTATAAATGACATAGTGTG+TGG - chr4_1:4243327-4243346 Msa0530210:intron 30.0%
CTATAGTTATGGTTCATTAG+TGG + chr4_1:4243374-4243393 None:intergenic 30.0%
CACTAATGAACCATAACTAT+AGG - chr4_1:4243372-4243391 Msa0530210:intron 30.0%
!! AACTCTTTGACTTTTTCCAT+TGG + chr4_1:4243513-4243532 None:intergenic 30.0%
AGTTTCTAACAAGAGAATGA+GGG + chr4_1:4243792-4243811 None:intergenic 30.0%
AAGTTTCTAACAAGAGAATG+AGG + chr4_1:4243793-4243812 None:intergenic 30.0%
GGTGATTTGAATCAACTATT+TGG - chr4_1:4243906-4243925 Msa0530210:intron 30.0%
! TTGCTTTCAGAGTTTTACAA+GGG + chr4_1:4244071-4244090 None:intergenic 30.0%
! ATTGCTTTCAGAGTTTTACA+AGG + chr4_1:4244072-4244091 None:intergenic 30.0%
! AACATGTGATGGAGATTTAT+TGG + chr4_1:4244409-4244428 None:intergenic 30.0%
! ATTTAACTTATGTTTGGAGC+GGG - chr4_1:4244449-4244468 Msa0530210:CDS 30.0%
CCGTAAATACAACTTACATT+AGG + chr4_1:4244814-4244833 None:intergenic 30.0%
CTTCATATTGGAATGAAACA+AGG - chr4_1:4245755-4245774 Msa0530210:intron 30.0%
TGATCAGTGTTGTCAAATAT+CGG - chr4_1:4245879-4245898 Msa0530210:intron 30.0%
TACTTCATGCAACATATGAA+TGG - chr4_1:4246098-4246117 Msa0530210:intron 30.0%
CGCTTTCAACATAATCAAAT+TGG + chr4_1:4246205-4246224 None:intergenic 30.0%
! TATGGTAAGCAACTAGTTTA+TGG + chr4_1:4246327-4246346 None:intergenic 30.0%
TGTTTGAATCAATAGTATCG+GGG + chr4_1:4246355-4246374 None:intergenic 30.0%
CTGTTTGAATCAATAGTATC+GGG + chr4_1:4246356-4246375 None:intergenic 30.0%
TTTCCCATATACTTTGATAG+AGG - chr4_1:4246429-4246448 Msa0530210:intron 30.0%
TTCCCATATACTTTGATAGA+GGG - chr4_1:4246430-4246449 Msa0530210:intron 30.0%
ATCCCTCTATCAAAGTATAT+GGG + chr4_1:4246435-4246454 None:intergenic 30.0%
TATCCCTCTATCAAAGTATA+TGG + chr4_1:4246436-4246455 None:intergenic 30.0%
TATTGAGTATATCTCCAACT+TGG - chr4_1:4246488-4246507 Msa0530210:intron 30.0%
! ACAGTCAATTTGCAGTTTTA+GGG + chr4_1:4246544-4246563 None:intergenic 30.0%
TGTTAACTCAAAATGCTACT+AGG + chr4_1:4246583-4246602 None:intergenic 30.0%
!!! ACATTAAATGAAGGGCATTT+TGG + chr4_1:4246737-4246756 None:intergenic 30.0%
! TTTAGGGAAATATGCTCTTT+TGG + chr4_1:4246988-4247007 None:intergenic 30.0%
GCATATTTCCATATAGATAG+AGG - chr4_1:4247057-4247076 Msa0530210:intron 30.0%
AAATTTGCCCTCTATCTATA+TGG + chr4_1:4247068-4247087 None:intergenic 30.0%
! AATTTGTGATTTGGCATCAA+GGG + chr4_1:4247635-4247654 None:intergenic 30.0%
! TAATTTGTGATTTGGCATCA+AGG + chr4_1:4247636-4247655 None:intergenic 30.0%
AGTATTAAAGCTGTCTCATT+AGG + chr4_1:4248038-4248057 None:intergenic 30.0%
! TCCTATATGGCTACATATTT+TGG - chr4_1:4248251-4248270 Msa0530210:intron 30.0%
! CCTATATGGCTACATATTTT+GGG - chr4_1:4248252-4248271 Msa0530210:intron 30.0%
!!! ACTCTATTTTTGAGTAGAAG+AGG - chr4_1:4248326-4248345 Msa0530210:intron 30.0%
GATGTAGTTTCTATCTATTG+AGG - chr4_1:4248638-4248657 Msa0530210:five_prime_UTR 30.0%
ACATATAATACGACTTGCAT+TGG - chr4_1:4248727-4248746 Msa0530210:five_prime_UTR 30.0%
CATATAATACGACTTGCATT+GGG - chr4_1:4248728-4248747 Msa0530210:five_prime_UTR 30.0%
TCAATGAATATTGCAAGACT+TGG - chr4_1:4248787-4248806 Msa0530210:five_prime_UTR 30.0%
AAAAAAATGGCCCCAAAATC+AGG - chr4_1:4242131-4242150 Msa0530210:three_prime_UTR 35.0%
AAAAAATGGCCCCAAAATCA+GGG - chr4_1:4242132-4242151 Msa0530210:three_prime_UTR 35.0%
! TTTTCCTTTCCCTGATTTTG+GGG + chr4_1:4242144-4242163 None:intergenic 35.0%
! GTTTTTCCTTTCCCTGATTT+TGG + chr4_1:4242146-4242165 None:intergenic 35.0%
AAGAAGAAAAAGGAGGAGAA+AGG - chr4_1:4242185-4242204 Msa0530210:CDS 35.0%
CTGATAAGATACTTGATGTG+AGG - chr4_1:4242501-4242520 Msa0530210:CDS 35.0%
! AGTACTTAGTTTGGCTAGTT+AGG + chr4_1:4242659-4242678 None:intergenic 35.0%
! TCTTAGTAGACATGGCTTTA+GGG + chr4_1:4242773-4242792 None:intergenic 35.0%
TTCTTAGTAGACATGGCTTT+AGG + chr4_1:4242774-4242793 None:intergenic 35.0%
AAAGCCATGTCTACTAAGAA+TGG - chr4_1:4242774-4242793 Msa0530210:CDS 35.0%
TCAACCATTCTTAGTAGACA+TGG + chr4_1:4242781-4242800 None:intergenic 35.0%
TGTCTACTAAGAATGGTTGA+AGG - chr4_1:4242781-4242800 Msa0530210:CDS 35.0%
TACTAAGAATGGTTGAAGGT+AGG - chr4_1:4242785-4242804 Msa0530210:CDS 35.0%
!! GTGCTGATTGAATAACAAAC+GGG - chr4_1:4243301-4243320 Msa0530210:intron 35.0%
! TGCTGATTGAATAACAAACG+GGG - chr4_1:4243302-4243321 Msa0530210:intron 35.0%
TTCTTTGCTTCATCTACCAA+TGG - chr4_1:4243494-4243513 Msa0530210:intron 35.0%
!!! GAACAAGTGTTTTGGAATAC+TGG - chr4_1:4243564-4243583 Msa0530210:intron 35.0%
CTCTTTAATGCTTCCCATAT+TGG - chr4_1:4243977-4243996 Msa0530210:intron 35.0%
CTGAAAGCAATGACATTCAT+TGG - chr4_1:4244081-4244100 Msa0530210:intron 35.0%
! TATTCTTCAAGCTTTAGCTC+AGG + chr4_1:4244657-4244676 None:intergenic 35.0%
ATAGCCTGCACAACAAAATT+CGG - chr4_1:4245025-4245044 Msa0530210:intron 35.0%
TCATCAAAGCCCAAGAAAAA+CGG - chr4_1:4245079-4245098 Msa0530210:intron 35.0%
!!! ACCGCTCTTGTTTTGATTAT+GGG + chr4_1:4245110-4245129 None:intergenic 35.0%
!!! AACCGCTCTTGTTTTGATTA+TGG + chr4_1:4245111-4245130 None:intergenic 35.0%
TCTGCAATGAAAGCCAATTA+AGG + chr4_1:4245451-4245470 None:intergenic 35.0%
AACCAATGGATATATCAGAG+TGG - chr4_1:4245522-4245541 Msa0530210:CDS 35.0%
ATCCACTCTGATATATCCAT+TGG + chr4_1:4245527-4245546 None:intergenic 35.0%
!! TATATCAGAGTGGATTGCTA+TGG - chr4_1:4245532-4245551 Msa0530210:CDS 35.0%
! AGAATCTGGAGTTCAAATTC+AGG + chr4_1:4245603-4245622 None:intergenic 35.0%
TCGAACATCAACAAAGAATC+TGG + chr4_1:4245617-4245636 None:intergenic 35.0%
TATGAAGCCACTTCAAACTT+TGG + chr4_1:4245742-4245761 None:intergenic 35.0%
! AGTTTGAAGTGGCTTCATAT+TGG - chr4_1:4245743-4245762 Msa0530210:intron 35.0%
TCGAAATACTGGTAATTGGT+TGG - chr4_1:4245826-4245845 Msa0530210:intron 35.0%
! GTAATTGGTTGGTTAGTGAT+TGG - chr4_1:4245837-4245856 Msa0530210:intron 35.0%
CACTGATCAGATGATAAGAT+AGG + chr4_1:4245868-4245887 None:intergenic 35.0%
!!! AATTTTTGGCGTTTTGCCAT+AGG - chr4_1:4245935-4245954 Msa0530210:intron 35.0%
!! TATGGTTTGTTCCATTACAG+TGG - chr4_1:4246050-4246069 Msa0530210:intron 35.0%
! AATAGTATCGGGGATGTTTA+TGG + chr4_1:4246345-4246364 None:intergenic 35.0%
! GACAGTCAATTTGCAGTTTT+AGG + chr4_1:4246545-4246564 None:intergenic 35.0%
AGAGCATATTTCCCTAAAGT+TGG - chr4_1:4246990-4247009 Msa0530210:intron 35.0%
CATATTTCCCTAAAGTTGGA+GGG - chr4_1:4246994-4247013 Msa0530210:intron 35.0%
AGAGCATATTTCCCTAAAGT+TGG - chr4_1:4246990-4247009 Msa0530210:intron 35.0%
CATATTTCCCTAAAGTTGGA+GGG - chr4_1:4246994-4247013 Msa0530210:intron 35.0%
!! TCTTTGAAATTGCAAGTCCT+CGG + chr4_1:4247312-4247331 None:intergenic 35.0%
! ATTTGTGATTTGGCATCAAG+GGG + chr4_1:4247634-4247653 None:intergenic 35.0%
CATACAAAGGATATCTGCAA+AGG + chr4_1:4247737-4247756 None:intergenic 35.0%
!! TCTTTGTCAAGCTTGTTACA+AGG - chr4_1:4247767-4247786 Msa0530210:intron 35.0%
TATTGCATCTAGAAGCTTAG+AGG + chr4_1:4247826-4247845 None:intergenic 35.0%
AGGTATATATTAGTGCTTGG+TGG + chr4_1:4248077-4248096 None:intergenic 35.0%
ACCAAGCACTAATATATACC+TGG - chr4_1:4248076-4248095 Msa0530210:intron 35.0%
AAGCACTAATATATACCTGG+CGG - chr4_1:4248079-4248098 Msa0530210:intron 35.0%
TGAAGTCTTCTTCATTGAGA+AGG + chr4_1:4248172-4248191 None:intergenic 35.0%
TGGAAATACAAAAGCTGCTT+TGG - chr4_1:4248202-4248221 Msa0530210:intron 35.0%
CCCAAAATATGTAGCCATAT+AGG + chr4_1:4248255-4248274 None:intergenic 35.0%
TTTGCTGAATTAACCTCACA+AGG - chr4_1:4248350-4248369 Msa0530210:intron 35.0%
ATTAACCTCACAAGGTCTTA+AGG - chr4_1:4248358-4248377 Msa0530210:intron 35.0%
TTAACCTCACAAGGTCTTAA+GGG - chr4_1:4248359-4248378 Msa0530210:intron 35.0%
TTGAATTCGCAAAAACACTC+GGG + chr4_1:4248455-4248474 None:intergenic 35.0%
CTTGAATTCGCAAAAACACT+CGG + chr4_1:4248456-4248475 None:intergenic 35.0%
!!! GCGAATTCAAGTTGTGATTT+TGG - chr4_1:4248465-4248484 Msa0530210:CDS 35.0%
! CAAGTTGTGATTTTGGATCT+AGG - chr4_1:4248472-4248491 Msa0530210:CDS 35.0%
! TTGTGCTTCACTTTGAAAGA+AGG - chr4_1:4248563-4248582 Msa0530210:five_prime_UTR 35.0%
TAGAAACTACATCCCTTCAT+TGG + chr4_1:4248631-4248650 None:intergenic 35.0%
!!! CATTGAGAAGTTGATGCTTT+TGG - chr4_1:4248835-4248854 Msa0530210:five_prime_UTR 35.0%
ACCTTATTAGCAACAAGGAG+AGG - chr4_1:4241860-4241879 Msa0530210:three_prime_UTR 40.0%
!! TGTTCTTTGGTAGTGCCAAA+AGG - chr4_1:4242094-4242113 Msa0530210:three_prime_UTR 40.0%
!! GTTCTTTGGTAGTGCCAAAA+GGG - chr4_1:4242095-4242114 Msa0530210:three_prime_UTR 40.0%
! TTGTTCTCACAACACCCTTT+TGG + chr4_1:4242112-4242131 None:intergenic 40.0%
GACAGAGAAGAAGAAAAAGG+AGG - chr4_1:4242178-4242197 Msa0530210:exon 40.0%
ACTTGATGTGAGGAAGCTAT+TGG - chr4_1:4242511-4242530 Msa0530210:CDS 40.0%
ATAGTGTGTGGACATGTCTA+AGG - chr4_1:4243339-4243358 Msa0530210:intron 40.0%
AAGCAAAGAACGTGGTAGAT+GGG + chr4_1:4243484-4243503 None:intergenic 40.0%
CAACCTGTCTTCTCCAATAT+GGG + chr4_1:4243993-4244012 None:intergenic 40.0%
TTTATTGGAAGCAGAGAGGT+GGG + chr4_1:4244394-4244413 None:intergenic 40.0%
ATTTATTGGAAGCAGAGAGG+TGG + chr4_1:4244395-4244414 None:intergenic 40.0%
GAGATTTATTGGAAGCAGAG+AGG + chr4_1:4244398-4244417 None:intergenic 40.0%
!!! GAGTGTTGGAGGATTTTGAA+GGG + chr4_1:4244705-4244724 None:intergenic 40.0%
!!! AGAGTGTTGGAGGATTTTGA+AGG + chr4_1:4244706-4244725 None:intergenic 40.0%
! TACATTTAGAGCGAGAGTGT+TGG + chr4_1:4244719-4244738 None:intergenic 40.0%
!! CTTTCCGAATTTTGTTGTGC+AGG + chr4_1:4245032-4245051 None:intergenic 40.0%
!! TGGGCTTTTCCGTTTTTCTT+GGG + chr4_1:4245091-4245110 None:intergenic 40.0%
!! ATGGGCTTTTCCGTTTTTCT+TGG + chr4_1:4245092-4245111 None:intergenic 40.0%
GCCCATAATCAAAACAAGAG+CGG - chr4_1:4245106-4245125 Msa0530210:CDS 40.0%
!!! TTTTCTCCATTCGGTGTTAC+GGG + chr4_1:4245142-4245161 None:intergenic 40.0%
!!! GTTTTCTCCATTCGGTGTTA+CGG + chr4_1:4245143-4245162 None:intergenic 40.0%
TAACACCGAATGGAGAAAAC+CGG - chr4_1:4245143-4245162 Msa0530210:intron 40.0%
ATTCCCACATTCTCCGATAT+CGG + chr4_1:4245201-4245220 None:intergenic 40.0%
TCATCCAAATCCGACAACTT+CGG + chr4_1:4245243-4245262 None:intergenic 40.0%
TCAGTTAGTTGGTTGAGACA+GGG - chr4_1:4245394-4245413 Msa0530210:intron 40.0%
GCTCTACCAATAGAAACCAA+TGG - chr4_1:4245508-4245527 Msa0530210:CDS 40.0%
TTGTGATTGCAGTTCTGTGA+CGG - chr4_1:4245676-4245695 Msa0530210:CDS 40.0%
!! GATTGCAGTGGTGGAATTTT+TGG - chr4_1:4245921-4245940 Msa0530210:intron 40.0%
! GCAGTGTTATTCATTGCAGA+TGG + chr4_1:4245965-4245984 None:intergenic 40.0%
!! GTTCCATTACAGTGGTTTTG+CGG - chr4_1:4246058-4246077 Msa0530210:intron 40.0%
! GGTTCTTTTGTTGCAATCTC+CGG + chr4_1:4246152-4246171 None:intergenic 40.0%
AACAAAAGAACCAGTTCCAG+TGG - chr4_1:4246160-4246179 Msa0530210:intron 40.0%
ACCATACCTGTCTCTTCTTT+GGG + chr4_1:4246279-4246298 None:intergenic 40.0%
AACCATACCTGTCTCTTCTT+TGG + chr4_1:4246280-4246299 None:intergenic 40.0%
!! TGATTTTGACCCCCTGTTTT+GGG + chr4_1:4246942-4246961 None:intergenic 40.0%
GCATATTTCCCTAAAGTTGG+AGG - chr4_1:4246993-4247012 Msa0530210:intron 40.0%
! CTTTTGACCCTCCAACTTTA+GGG + chr4_1:4247004-4247023 None:intergenic 40.0%
! TCTTTTGACCCTCCAACTTT+AGG + chr4_1:4247005-4247024 None:intergenic 40.0%
GCATATTTCCCTAAAGTTGG+AGG - chr4_1:4246993-4247012 Msa0530210:intron 40.0%
! CTTTTGACCCTCCAACTTTA+GGG + chr4_1:4247004-4247023 None:intergenic 40.0%
! TCTTTTGACCCTCCAACTTT+AGG + chr4_1:4247005-4247024 None:intergenic 40.0%
CATCTAGACATAAATGACCG+AGG - chr4_1:4247292-4247311 Msa0530210:intron 40.0%
! GATTAGTCCCTGGAAATAAC+TGG + chr4_1:4247346-4247365 None:intergenic 40.0%
! ATGAGCTAGTCCAAAAGTGT+TGG - chr4_1:4247508-4247527 Msa0530210:intron 40.0%
AGGATATCTGCAAAGGTAGA+AGG + chr4_1:4247730-4247749 None:intergenic 40.0%
! AGAGCAGCTTTTGCATACAA+AGG + chr4_1:4247750-4247769 None:intergenic 40.0%
TTAGAGGCTTTACTTTCCAG+GGG + chr4_1:4247810-4247829 None:intergenic 40.0%
CTTAGAGGCTTTACTTTCCA+GGG + chr4_1:4247811-4247830 None:intergenic 40.0%
TGGAGAGACAAAAAGGGTTT+AGG + chr4_1:4247849-4247868 None:intergenic 40.0%
GCCAGGTATATATTAGTGCT+TGG + chr4_1:4248080-4248099 None:intergenic 40.0%
!! GCTAGACTTGGTGAATATGT+TGG + chr4_1:4248150-4248169 None:intergenic 40.0%
TTCATTGAGAAGGCTAGACT+TGG + chr4_1:4248162-4248181 None:intergenic 40.0%
!! GGCTACATATTTTGGGAACA+TGG - chr4_1:4248259-4248278 Msa0530210:intron 40.0%
!! TTTTGGGAACATGGACAAGA+TGG - chr4_1:4248268-4248287 Msa0530210:intron 40.0%
! TTTTCCCTTAAGACCTTGTG+AGG + chr4_1:4248366-4248385 None:intergenic 40.0%
GCCTCTCCTTGTTGCTAATA+AGG + chr4_1:4241864-4241883 None:intergenic 45.0%
AGCAAAGAACGTGGTAGATG+GGG + chr4_1:4243483-4243502 None:intergenic 45.0%
GAAGCAAAGAACGTGGTAGA+TGG + chr4_1:4243485-4243504 None:intergenic 45.0%
GGTAGATGAAGCAAAGAACG+TGG + chr4_1:4243492-4243511 None:intergenic 45.0%
CTTCCCATATTGGAGAAGAC+AGG - chr4_1:4243987-4244006 Msa0530210:intron 45.0%
GCAACCTGTCTTCTCCAATA+TGG + chr4_1:4243994-4244013 None:intergenic 45.0%
!! CATTCAAGTTGCGTCCTTAG+TGG - chr4_1:4244358-4244377 Msa0530210:intron 45.0%
! TGGGGTTTGGTATTCCACTA+AGG + chr4_1:4244375-4244394 None:intergenic 45.0%
TTATTGGAAGCAGAGAGGTG+GGG + chr4_1:4244393-4244412 None:intergenic 45.0%
!! ATTTAGAGCGAGAGTGTTGG+AGG + chr4_1:4244716-4244735 None:intergenic 45.0%
TACACACGTGCGAAGGTTAT+TGG - chr4_1:4244997-4245016 Msa0530210:intron 45.0%
AAGCCCAAACGTAACATAGC+AGG - chr4_1:4245049-4245068 Msa0530210:intron 45.0%
! TCTTGGGCTTTGATGAGTCT+GGG + chr4_1:4245075-4245094 None:intergenic 45.0%
! TTCTTGGGCTTTGATGAGTC+TGG + chr4_1:4245076-4245095 None:intergenic 45.0%
AACACCGAATGGAGAAAACC+GGG - chr4_1:4245144-4245163 Msa0530210:intron 45.0%
GATATCGGAGAATGTGGGAA+TGG - chr4_1:4245200-4245219 Msa0530210:intron 45.0%
GTCAGTTAGTTGGTTGAGAC+AGG - chr4_1:4245393-4245412 Msa0530210:intron 45.0%
!! ATCAGAGTGGATTGCTATGG+AGG - chr4_1:4245535-4245554 Msa0530210:CDS 45.0%
CATCTCTTCGCATCTGATTG+AGG + chr4_1:4245561-4245580 None:intergenic 45.0%
TGTCCTGCCAAAGTTTGAAG+TGG - chr4_1:4245732-4245751 Msa0530210:intron 45.0%
AAGCCACTTCAAACTTTGGC+AGG + chr4_1:4245738-4245757 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr4_1:4245885-4245904 Msa0530210:intron 45.0%
CATTGCAGATGGAAGACCTA+TGG + chr4_1:4245954-4245973 None:intergenic 45.0%
CATCCGCAAAACCACTGTAA+TGG + chr4_1:4246064-4246083 None:intergenic 45.0%
AGTCGTCACAACATTACCAC+CGG - chr4_1:4246130-4246149 Msa0530210:intron 45.0%
! TCTTTTGTTGCAATCTCCGG+TGG + chr4_1:4246149-4246168 None:intergenic 45.0%
!! TTCCAGTGGACTGTAGCAAA+AGG - chr4_1:4246174-4246193 Msa0530210:intron 45.0%
! TTCCTTTTGCTACAGTCCAC+TGG + chr4_1:4246179-4246198 None:intergenic 45.0%
! GTGGACTGTAGCAAAAGGAA+AGG - chr4_1:4246179-4246198 Msa0530210:intron 45.0%
!! TCTCTTCTTTGGGACATTGC+TGG + chr4_1:4246269-4246288 None:intergenic 45.0%
CAATGTCCCAAAGAAGAGAC+AGG - chr4_1:4246270-4246289 Msa0530210:intron 45.0%
TCCCAAAGAAGAGACAGGTA+TGG - chr4_1:4246275-4246294 Msa0530210:intron 45.0%
!! GTGATTTTGACCCCCTGTTT+TGG + chr4_1:4246943-4246962 None:intergenic 45.0%
GGCCAAAATCGCAACGTTTA+GGG - chr4_1:4247107-4247126 Msa0530210:intron 45.0%
GCCAAAATCGCAACGTTTAG+GGG - chr4_1:4247108-4247127 Msa0530210:intron 45.0%
CCAAAATCGCAACGTTTAGG+GGG - chr4_1:4247109-4247128 Msa0530210:intron 45.0%
CAAAATCGCAACGTTTAGGG+GGG - chr4_1:4247110-4247129 Msa0530210:intron 45.0%
AAAATCGCAACGTTTAGGGG+GGG - chr4_1:4247111-4247130 Msa0530210:intron 45.0%
! GTCATTGTCAGATTAGTCCC+TGG + chr4_1:4247356-4247375 None:intergenic 45.0%
CTGGCAAGAATAATTCACCG+TGG - chr4_1:4247558-4247577 Msa0530210:intron 45.0%
GCTTAGAGGCTTTACTTTCC+AGG + chr4_1:4247812-4247831 None:intergenic 45.0%
CGAAGGTGGAGAGACAAAAA+GGG + chr4_1:4247855-4247874 None:intergenic 45.0%
ACGAAGGTGGAGAGACAAAA+AGG + chr4_1:4247856-4247875 None:intergenic 45.0%
CTTTGATGGAAGCAGGTGAA+AGG + chr4_1:4247923-4247942 None:intergenic 45.0%
! TAGTGCTACTGCTGCTTCTA+CGG + chr4_1:4247946-4247965 None:intergenic 45.0%
CACTAGTGGAGAGAAAACCA+TGG - chr4_1:4247961-4247980 Msa0530210:intron 45.0%
AGCTGTCTCATTAGGTGTGA+GGG + chr4_1:4248030-4248049 None:intergenic 45.0%
AAGCTGTCTCATTAGGTGTG+AGG + chr4_1:4248031-4248050 None:intergenic 45.0%
ACTAATATATACCTGGCGGC+TGG - chr4_1:4248083-4248102 Msa0530210:CDS 45.0%
GAAGACTTCACAAGCATGCA+TGG - chr4_1:4248182-4248201 Msa0530210:intron 45.0%
GCAGCAATGAGAGCTTTCAA+AGG - chr4_1:4248293-4248312 Msa0530210:CDS 45.0%
ATCTCTGTGAACCTTCCAGA+GGG + chr4_1:4248402-4248421 None:intergenic 45.0%
TCACAGAGATGAGTTTGTCG+CGG - chr4_1:4248412-4248431 Msa0530210:intron 45.0%
ATACGACTTGCATTGGGAGT+AGG - chr4_1:4248734-4248753 Msa0530210:five_prime_UTR 45.0%
!!! TATTTTTTTGATATAAAAAA+TGG + chr4_1:4243539-4243558 None:intergenic 5.0%
!! AAATAATAAAAATTCAAAAA+AGG - chr4_1:4246517-4246536 Msa0530210:intron 5.0%
!!! ATTAATAACTTTTAAATAAA+AGG - chr4_1:4246792-4246811 Msa0530210:intron 5.0%
!! AATTAAATTAATAAGTTATT+AGG + chr4_1:4248530-4248549 None:intergenic 5.0%
ATGGCCCCAAAATCAGGGAA+AGG - chr4_1:4242137-4242156 Msa0530210:three_prime_UTR 50.0%
! GAGGAAGCTATTGGCTGTGA+AGG - chr4_1:4242520-4242539 Msa0530210:CDS 50.0%
! GAAGCTATTGGCTGTGAAGG+TGG - chr4_1:4242523-4242542 Msa0530210:CDS 50.0%
GTGTGTGGACATGTCTAAGG+TGG - chr4_1:4243342-4243361 Msa0530210:intron 50.0%
GCAAAGAACGTGGTAGATGG+GGG + chr4_1:4243482-4243501 None:intergenic 50.0%
AAGCAACTACACACGTGCGA+AGG - chr4_1:4244990-4245009 Msa0530210:intron 50.0%
GGGCCTGCTATGTTACGTTT+GGG + chr4_1:4245055-4245074 None:intergenic 50.0%
TGGGCCTGCTATGTTACGTT+TGG + chr4_1:4245056-4245075 None:intergenic 50.0%
TCGCCGATATCGGAGAATGT+GGG - chr4_1:4245195-4245214 Msa0530210:intron 50.0%
ATCGGAGAATGTGGGAATGG+TGG - chr4_1:4245203-4245222 Msa0530210:intron 50.0%
AAATCCGACAACTTCGGCGT+CGG + chr4_1:4245237-4245256 None:intergenic 50.0%
GTTGAGACAGGGCTGATGAT+TGG - chr4_1:4245405-4245424 Msa0530210:intron 50.0%
ATTGCAGTTCTGTGACGGTG+TGG - chr4_1:4245681-4245700 Msa0530210:intron 50.0%
TTGCAGTTCTGTGACGGTGT+GGG - chr4_1:4245682-4245701 Msa0530210:intron 50.0%
! AATCTGCCATGGTGATGCCA+TGG + chr4_1:4245905-4245924 None:intergenic 50.0%
ATCACCATGGCAGATTGCAG+TGG - chr4_1:4245909-4245928 Msa0530210:intron 50.0%
TTGCTACAGTCCACTGGAAC+TGG + chr4_1:4246173-4246192 None:intergenic 50.0%
ACACCACGTGTCCCAAAACA+GGG - chr4_1:4246928-4246947 Msa0530210:intron 50.0%
GGGCCAAAATCGCAACGTTT+AGG - chr4_1:4247106-4247125 Msa0530210:intron 50.0%
! CCCCCTAAACGTTGCGATTT+TGG + chr4_1:4247112-4247131 None:intergenic 50.0%
! GAGCAGCAGACCAACACTTT+TGG + chr4_1:4247521-4247540 None:intergenic 50.0%
GGCTTTACTTTCCAGGGGTT+TGG + chr4_1:4247805-4247824 None:intergenic 50.0%
TGTCAGGCTCAAAACGAAGG+TGG + chr4_1:4247869-4247888 None:intergenic 50.0%
CCATGTCAGGCTCAAAACGA+AGG + chr4_1:4247872-4247891 None:intergenic 50.0%
!! CCTTCGTTTTGAGCCTGACA+TGG - chr4_1:4247869-4247888 Msa0530210:CDS 50.0%
TGGCTGTATGCAACCATGTC+AGG + chr4_1:4247885-4247904 None:intergenic 50.0%
TACAGCCAGTGCCAATACAC+AGG - chr4_1:4247897-4247916 Msa0530210:CDS 50.0%
! AAAGGCCTGTGTATTGGCAC+TGG + chr4_1:4247905-4247924 None:intergenic 50.0%
CAGGTGAAAGGCCTGTGTAT+TGG + chr4_1:4247911-4247930 None:intergenic 50.0%
! TCTACGGCTTTGATGGAAGC+AGG + chr4_1:4247930-4247949 None:intergenic 50.0%
! TGCTGCTTCTACGGCTTTGA+TGG + chr4_1:4247937-4247956 None:intergenic 50.0%
AGAAGCAGCAGTAGCACTAG+TGG - chr4_1:4247947-4247966 Msa0530210:intron 50.0%
GTGGAGAGAAAACCATGGAC+CGG - chr4_1:4247966-4247985 Msa0530210:intron 50.0%
TCCCACGTTGTCTCCAAATG+CGG + chr4_1:4248001-4248020 None:intergenic 50.0%
GCTGTCTCATTAGGTGTGAG+GGG + chr4_1:4248029-4248048 None:intergenic 50.0%
GACGGTCTGATGGAAATCGA+AGG - chr4_1:4248107-4248126 Msa0530210:CDS 50.0%
!! AAGAGTTGATGCAAGCCCTC+TGG - chr4_1:4248384-4248403 Msa0530210:intron 50.0%
CATCTCTGTGAACCTTCCAG+AGG + chr4_1:4248403-4248422 None:intergenic 50.0%
CACAGAGATGAGTTTGTCGC+GGG - chr4_1:4248413-4248432 Msa0530210:intron 50.0%
!! CTCCATTCGGTGTTACGGGT+GGG + chr4_1:4245138-4245157 None:intergenic 55.0%
!! TCTCCATTCGGTGTTACGGG+TGG + chr4_1:4245139-4245158 None:intergenic 55.0%
! CCGACCCGGTTTTCTCCATT+CGG + chr4_1:4245151-4245170 None:intergenic 55.0%
CCGAATGGAGAAAACCGGGT+CGG - chr4_1:4245148-4245167 Msa0530210:intron 55.0%
CGAATGGAGAAAACCGGGTC+GGG - chr4_1:4245149-4245168 Msa0530210:intron 55.0%
GTCGCCGATATCGGAGAATG+TGG - chr4_1:4245194-4245213 Msa0530210:intron 55.0%
TCATCCGACGCCGAAGTTGT+CGG - chr4_1:4245230-4245249 Msa0530210:intron 55.0%
GACGCCGAAGTTGTCGGATT+TGG - chr4_1:4245236-4245255 Msa0530210:intron 55.0%
TATCGGCCATGGCATCACCA+TGG - chr4_1:4245896-4245915 Msa0530210:intron 55.0%
ACCATGGCAGATTGCAGTGG+TGG - chr4_1:4245912-4245931 Msa0530210:intron 55.0%
TCCACCACTGCAATCTGCCA+TGG + chr4_1:4245916-4245935 None:intergenic 55.0%
TGGGACACGTGGTGTCTTCT+TGG + chr4_1:4246923-4246942 None:intergenic 55.0%
GACACCACGTGTCCCAAAAC+AGG - chr4_1:4246927-4246946 Msa0530210:intron 55.0%
CACCACGTGTCCCAAAACAG+GGG - chr4_1:4246929-4246948 Msa0530210:intron 55.0%
ACCACGTGTCCCAAAACAGG+GGG - chr4_1:4246930-4246949 Msa0530210:intron 55.0%
! CCAAATGCGGGCTAACTCTC+CGG + chr4_1:4247988-4248007 None:intergenic 55.0%
CCCACGTTGTCTCCAAATGC+GGG + chr4_1:4248000-4248019 None:intergenic 55.0%
CCCGCATTTGGAGACAACGT+GGG - chr4_1:4247997-4248016 Msa0530210:intron 55.0%
ATATACCTGGCGGCTGGAGA+CGG - chr4_1:4248089-4248108 Msa0530210:CDS 55.0%
GTTGATGCAAGCCCTCTGGA+AGG - chr4_1:4248388-4248407 Msa0530210:intron 55.0%
GATGAGTTTGTCGCGGGAAG+AGG - chr4_1:4248419-4248438 Msa0530210:intron 55.0%
GGAAGCAGAGAGGTGGGGTT+TGG + chr4_1:4244388-4244407 None:intergenic 60.0%
AGCCCACCCGTAACACCGAA+TGG - chr4_1:4245133-4245152 Msa0530210:CDS 60.0%
TTCTCCGATATCGGCGACGC+CGG + chr4_1:4245192-4245211 None:intergenic 60.0%
GTGACGGTGTGGGAATCGCT+CGG - chr4_1:4245692-4245711 Msa0530210:intron 60.0%
!!! ACCCCCTGTTTTGGGACACG+TGG + chr4_1:4246934-4246953 None:intergenic 60.0%
GTTACGTCTCGCCAAACCCC+TGG - chr4_1:4247791-4247810 Msa0530210:intron 60.0%
CCGGAGAGTTAGCCCGCATT+TGG - chr4_1:4247985-4248004 Msa0530210:intron 60.0%
GCCCGCATTTGGAGACAACG+TGG - chr4_1:4247996-4248015 Msa0530210:intron 60.0%
! CCGACATTGGTGACCCGACC+CGG + chr4_1:4245165-4245184 None:intergenic 65.0%
CCGGGTCGGGTCACCAATGT+CGG - chr4_1:4245162-4245181 Msa0530210:intron 65.0%
GGTCACCAATGTCGGAGCGC+CGG - chr4_1:4245170-4245189 Msa0530210:intron 65.0%
CGGGCTAACTCTCCGGTCCA+TGG + chr4_1:4247981-4248000 None:intergenic 65.0%
!! AGCGCCGGCGTCGCCGATAT+CGG - chr4_1:4245185-4245204 Msa0530210:intron 70.0%
TCAGACCGTCTCCAGCCGCC+AGG + chr4_1:4248097-4248116 None:intergenic 70.0%
GGCGGCTGGAGACGGTCTGA+TGG - chr4_1:4248097-4248116 Msa0530210:CDS 70.0%
CGACGCCGGCGCTCCGACAT+TGG + chr4_1:4245178-4245197 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4241788 4248877 4241788 ID=Msa0530210;Name=Msa0530210
chr4_1 mRNA 4241788 4248877 4241788 ID=Msa0530210-mRNA-1;Parent=Msa0530210;Name=Msa0530210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=349|0.87|0.77|1|1|1|9|396|548
chr4_1 exon 4241788 4242922 4241788 ID=Msa0530210-mRNA-1:exon:1265;Parent=Msa0530210-mRNA-1
chr4_1 exon 4244374 4244595 4244374 ID=Msa0530210-mRNA-1:exon:1264;Parent=Msa0530210-mRNA-1
chr4_1 exon 4244889 4244977 4244889 ID=Msa0530210-mRNA-1:exon:1263;Parent=Msa0530210-mRNA-1
chr4_1 exon 4245086 4245156 4245086 ID=Msa0530210-mRNA-1:exon:1262;Parent=Msa0530210-mRNA-1
chr4_1 exon 4245472 4245696 4245472 ID=Msa0530210-mRNA-1:exon:1261;Parent=Msa0530210-mRNA-1
chr4_1 exon 4247863 4247935 4247863 ID=Msa0530210-mRNA-1:exon:1260;Parent=Msa0530210-mRNA-1
chr4_1 exon 4248082 4248174 4248082 ID=Msa0530210-mRNA-1:exon:1259;Parent=Msa0530210-mRNA-1
chr4_1 exon 4248272 4248336 4248272 ID=Msa0530210-mRNA-1:exon:1258;Parent=Msa0530210-mRNA-1
chr4_1 exon 4248459 4248877 4248459 ID=Msa0530210-mRNA-1:exon:1257;Parent=Msa0530210-mRNA-1
chr4_1 five_prime_UTR 4248529 4248877 4248529 ID=Msa0530210-mRNA-1:five_prime_utr;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4248459 4248528 4248459 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4248272 4248336 4248272 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4248082 4248174 4248082 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4247863 4247935 4247863 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4245472 4245696 4245472 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4245086 4245156 4245086 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4244889 4244977 4244889 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4244374 4244595 4244374 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 CDS 4242184 4242922 4242184 ID=Msa0530210-mRNA-1:cds;Parent=Msa0530210-mRNA-1
chr4_1 three_prime_UTR 4241788 4242183 4241788 ID=Msa0530210-mRNA-1:three_prime_utr;Parent=Msa0530210-mRNA-1
Gene Sequence

>Msa0530210

ATGGCCCCAAAATCAGGGAAAGGAAAAACAAATAAAGCTAAGACAGAGAAGAAGAAAAAGGAGGAGAAAGCTGTGGCACCTTCTCTTGTAGACATTATTGTGGTAACTCCTTATGATTCACAAATTGTATTGAAGGGTATCTCTACTGATAAGATACTTGATGTGAGGAAGCTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAACTATTCTTTATCTCATGAGGTTAAAGGTCAGAGATTAAATGACAGAGTTGAAGTTGTTACCCTAAAGCCATGTCTACTAAGAATGGTTGAAGAGAATTACAATGAAGAATCTCAAGCAACTACACACGTGCGAAGGTTATTGGACATTATAGCCTGCACAACAAAATTCGGAAAGCCCAAACGTAACATAGCAGGCCCAGACTCATCAAAGCCCAAGAAAAACGGAAAAGCCCATAATCAAAACAAGAGCGGTTTGAGCCCACCCGTAACACCGAATGGAGAAAACCGGGTCGGGTCACCAATGTCGGAGCGCCGGCCTCTACCAATAGAAACCAATGGATATATCAGAGTGGATTGCTATGGAGGCCTCAATCAGATGCGAAGAGATTTCTGTGACGGTGTGGGAATCGCTCGGCTGTTAAATGCAACACTTGTCCTGCCAAAGTTTGAAGTGGCTTCATATTGGAATGAAACAAGTGGTTTTGCGGATGTATATGACGTAGACTACTTCATGCAACATATGAATGGCTTTGTCAAAGTCGTCACAACATTACCACCGGAGATTGCAACAAAAGAACCAGTTCCAGTGGACTGTAGCAAAAGGAAAGGCCAATTTGATTATGTTGAAAGCGTTCTCCCATCTCTGTTAAAACACAAATACATTTCAATCACACCAGCAATGTCCCAAAGAAGAGACAGATATCCTTTGTATGCAAAAGCTGCTCTTTGTCAAGCTTGTTACAAGGCGTTACGTCTCGCCAAACCCCTGGAAAGTAAAGCCTCTAAGCTTCTAGATGCAATACCTAAACCCTTTTTGTCTCTCCACCTTCGTTTTGAGCCTGACATGGTTGCATACAGCCAGTGCCAATACACAGGCCTTTCACCTGCTTCCATCAAAGCCGTAGAAGCAGCAGTAGCACTAGTGGAGAGAAAACCATGGACCGGAGAGTTAGCCCGCATTTGGAGACAACGTGGGAAATGTCCCCTCACACCTAATGAGACAGCTTTAATACTTCAATCTCTTTCTATTCCACCAAGCACTAATATATACCTGGCGGCTGGAGACGGTCTGATGGAAATCGAAGGATTAACAAATATTTACACCAACATATTCACCAAGTCTAGCCTTCTCAATGAAGAAGACTTCACAAGCATGCATGGAAATACAAAAGCTGCTTTGGATTATTATATATCTATCAATAGTGATTCCTATATGGCTACATATTTTGGGAACATGGACAAGATGGTTGCAGCAATGAGAGCTTTCAAAGGATTGTACAAAACTCTATTTTTGAGTAGAAGAGGATTTGCTGAATTAACCTCACAAGGTCTTAAGGGAAAAGAGTTGATGCAAGCCCTCTGGAAGGTTCACAGAGATGAGTTTGTCGCGGGAAGAGGCTCTGCTCTTCCCGAGTGTTTTTGCGAATTCAAGTTGTGA

Protein sequence

>Msa0530210

MAPKSGKGKTNKAKTEKKKKEEKAVAPSLVDIIVVTPYDSQIVLKGISTDKILDVRKLLAVKVETCHFTNYSLSHEVKGQRLNDRVEVVTLKPCLLRMVEENYNEESQATTHVRRLLDIIACTTKFGKPKRNIAGPDSSKPKKNGKAHNQNKSGLSPPVTPNGENRVGSPMSERRPLPIETNGYIRVDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEVASYWNETSGFADVYDVDYFMQHMNGFVKVVTTLPPEIATKEPVPVDCSKRKGQFDYVESVLPSLLKHKYISITPAMSQRRDRYPLYAKAALCQACYKALRLAKPLESKASKLLDAIPKPFLSLHLRFEPDMVAYSQCQYTGLSPASIKAVEAAVALVERKPWTGELARIWRQRGKCPLTPNETALILQSLSIPPSTNIYLAAGDGLMEIEGLTNIYTNIFTKSSLLNEEDFTSMHGNTKAALDYYISINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRRGFAELTSQGLKGKELMQALWKVHRDEFVAGRGSALPECFCEFKL*