AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581510 MtrunA17_Chr1g0152191 96.018 653 12 4 1 639 1 653 0.0 1264
Msa0581510 MtrunA17_Chr2g0300511 58.407 113 47 0 130 242 7 119 1.19e-40 152
Msa0581510 MtrunA17_Chr4g0070591 49.669 151 66 3 130 279 9 150 4.35e-40 150
Msa0581510 MtrunA17_Chr8g0343881 55.357 112 46 1 131 242 12 119 1.07e-39 149
Msa0581510 MtrunA17_Chr4g0021261 50.000 142 57 3 130 271 25 152 4.14e-37 141
Msa0581510 MtrunA17_Chr5g0409471 57.522 113 32 2 130 242 16 112 3.41e-36 138
Msa0581510 MtrunA17_Chr7g0265931 55.556 117 44 3 128 242 76 186 6.28e-33 130
Msa0581510 MtrunA17_Chr3g0127641 54.783 115 26 3 130 242 112 202 3.68e-32 131
Msa0581510 MtrunA17_Chr8g0351521 43.750 112 45 3 131 242 55 148 2.57e-20 94.0
Msa0581510 MtrunA17_Chr8g0351521 35.878 131 77 4 145 271 248 375 1.11e-11 67.4
Msa0581510 MtrunA17_Chr8g0351291 50.000 58 25 1 183 236 32 89 1.71e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581510 AT2G22840.1 38.742 604 200 21 27 597 22 488 4.06e-91 292
Msa0581510 AT4G37740.1 38.315 629 211 27 32 614 28 525 7.57e-85 276
Msa0581510 AT3G13960.1 51.852 135 48 2 130 264 16 133 3.23e-37 143
Msa0581510 AT2G36400.1 56.522 115 49 1 128 242 74 187 1.07e-33 133
Msa0581510 AT2G06200.2 45.342 161 75 4 130 278 45 204 2.19e-32 127
Msa0581510 AT2G06200.1 45.342 161 75 4 130 278 6 165 2.52e-32 125
Msa0581510 AT3G52910.1 50.413 121 48 2 128 242 80 194 5.47e-31 125
Msa0581510 AT4G24150.3 48.696 115 59 0 128 242 109 223 4.63e-26 112
Msa0581510 AT4G24150.2 48.696 115 59 0 128 242 147 261 8.91e-26 111
Msa0581510 AT5G53660.1 43.939 132 53 2 124 255 53 163 6.65e-24 104
Msa0581510 AT4G24150.1 45.714 140 51 5 128 242 147 286 1.62e-23 105
Msa0581510 AT2G45480.2 49.074 108 47 3 134 239 28 129 2.51e-22 98.6
Msa0581510 AT2G45480.1 49.074 108 47 3 134 239 26 127 1.61e-21 98.2
Msa0581510 AT2G45480.1 46.479 71 36 2 198 268 304 372 5.25e-13 72.0
Msa0581510 AT2G45480.3 49.074 108 47 3 134 239 28 129 1.71e-21 98.2
Msa0581510 AT2G45480.3 46.479 71 36 2 198 268 306 374 4.98e-13 72.0
Msa0581510 AT2G06200.3 46.237 93 44 2 192 278 1 93 1.72e-16 78.2

Find 175 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 4_1:-86910681 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 4_1:+86909486 Msa0581510:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 4_1:-86907389 None:intergenic
CTTTGCAAAGATAAAATAAT+TGG 0.217060 4_1:-86906264 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 4_1:-86909484 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 4_1:-86910800 None:intergenic
CTCTCAAATATTAATATTTA+CGG 0.237286 4_1:-86911432 None:intergenic
TTCTTCATCTTGTTCCTCTA+AGG 0.256559 4_1:-86911014 None:intergenic
ATGATATTACATTACATATA+TGG 0.264920 4_1:+86911121 Msa0581510:three_prime_UTR
GTGATCATCATTTGCATTGT+AGG 0.266573 4_1:-86910748 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 4_1:+86907102 Msa0581510:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.272838 4_1:+86909414 Msa0581510:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 4_1:-86909174 None:intergenic
ATACTTCCTTTACTCCTTAG+AGG 0.290780 4_1:+86911000 Msa0581510:CDS
ATACTACAAAGCAAGCTAAT+TGG 0.301022 4_1:+86910655 Msa0581510:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 4_1:-86909168 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 4_1:+86910281 Msa0581510:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 4_1:-86909500 None:intergenic
ATACCAATGCCAACATGATT+TGG 0.330711 4_1:+86911194 Msa0581510:three_prime_UTR
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 4_1:-86910336 None:intergenic
TCCTCGAGAAACAATGAATT+CGG 0.337712 4_1:+86910225 Msa0581510:CDS
GTTTGAACAGGTTATAGTTC+TGG 0.342225 4_1:+86908173 Msa0581510:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 4_1:+86910960 Msa0581510:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 4_1:+86907107 Msa0581510:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 4_1:-86909473 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 4_1:-86910588 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 4_1:+86910547 Msa0581510:CDS
CTAATTGGATTCCAATAACT+TGG 0.378217 4_1:+86910670 Msa0581510:CDS
TTGAGATGGTTTGTTTAAGG+TGG 0.378271 4_1:+86911374 Msa0581510:three_prime_UTR
TTGATTGATGCAGTGGGATG+GGG 0.381772 4_1:+86909111 Msa0581510:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 4_1:-86910394 None:intergenic
CACTCTTAGCTTTGCACACC+AGG 0.388983 4_1:+86909455 Msa0581510:CDS
GTGAAGATGAACCGAAGGTT+CGG 0.390750 4_1:-86910308 None:intergenic
ATGTTTCATGTGATGTTTGT+TGG 0.392993 4_1:+86911255 Msa0581510:three_prime_UTR
CAACATGATTTGGATATGTT+AGG 0.394707 4_1:+86911204 Msa0581510:three_prime_UTR
TAAGGAAATGAAGTATCTTA+TGG 0.400270 4_1:-86907016 None:intergenic
TGAGATGGTTTGTTTAAGGT+GGG 0.401551 4_1:+86911375 Msa0581510:three_prime_UTR
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 4_1:-86909308 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 4_1:-86909272 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 4_1:+86910579 Msa0581510:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 4_1:+86910578 Msa0581510:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 4_1:+86909285 Msa0581510:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 4_1:-86910799 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 4_1:-86909288 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 4_1:+86909303 Msa0581510:CDS
TGAAGATGAACCGAAGGTTC+GGG 0.426118 4_1:-86910307 None:intergenic
TGTTTCATGTGATGTTTGTT+GGG 0.426448 4_1:+86911256 Msa0581510:three_prime_UTR
TTTGATTGATGCAGTGGGAT+GGG 0.426520 4_1:+86909110 Msa0581510:intron
AACAACACCGATCCGGAACC+AGG 0.428029 4_1:+86909156 Msa0581510:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 4_1:+86910297 Msa0581510:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 4_1:+86910683 Msa0581510:CDS
ATTTGGATATGTTAGGCAAA+TGG 0.438818 4_1:+86911211 Msa0581510:three_prime_UTR
CCTCGAGAAACAATGAATTC+GGG 0.439367 4_1:+86910226 Msa0581510:CDS
TAACTGCACATACATGCATT+TGG 0.440306 4_1:-86908368 None:intergenic
CACCTAACCCCATTTGAATA+GGG 0.440538 4_1:-86910587 None:intergenic
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 4_1:-86909299 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 4_1:+86910803 Msa0581510:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 4_1:+86908229 Msa0581510:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 4_1:+86909290 Msa0581510:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 4_1:+86910753 Msa0581510:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 4_1:+86907183 Msa0581510:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 4_1:-86910910 None:intergenic
AGTAGTAGTAGCTGTATTTG+TGG 0.454473 4_1:-86909331 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 4_1:+86910867 Msa0581510:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 4_1:+86908314 Msa0581510:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 4_1:+86909526 Msa0581510:CDS
GATGTTTGTTGGGAGTGATT+TGG 0.465064 4_1:+86911266 Msa0581510:three_prime_UTR
CAGAAAACCTCCACTTTGCT+GGG 0.465527 4_1:+86910282 Msa0581510:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 4_1:-86909532 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 4_1:-86910561 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 4_1:-86910843 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 4_1:-86910141 None:intergenic
ACAGAAGAACCCTTTGGAAA+AGG 0.475675 4_1:-86906970 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 4_1:+86907432 Msa0581510:CDS
TGGTACAACAACAATGGATC+TGG 0.476248 4_1:+86907159 Msa0581510:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 4_1:-86910335 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 4_1:+86909125 Msa0581510:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 4_1:-86910154 None:intergenic
CTTGTTCCTCTAAGGAGTAA+AGG 0.479994 4_1:-86911006 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 4_1:+86907087 Msa0581510:exon
TAGATAAGCCAGCAGAATCA+AGG 0.485816 4_1:-86908322 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 4_1:+86910591 Msa0581510:CDS
AATAGTACAGAAGAACCCTT+TGG 0.489471 4_1:-86906976 None:intergenic
AGTTCAATGGGTGGTCCACT+TGG 0.489957 4_1:+86910696 Msa0581510:CDS
AACAGTAAAGTGATGTTGGT+TGG 0.490751 4_1:+86911321 Msa0581510:three_prime_UTR
AATCACAATAGTCCTCCAAT+TGG 0.497889 4_1:+86910828 Msa0581510:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 4_1:+86910843 Msa0581510:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 4_1:+86910451 Msa0581510:CDS
GACCATTCACACCTTCTCAA+TGG 0.498886 4_1:+86908210 Msa0581510:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 4_1:-86910132 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 4_1:+86910585 Msa0581510:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 4_1:+86910488 Msa0581510:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 4_1:+86910333 Msa0581510:CDS
TGATGAACCACTTGGAGTAA+TGG 0.508265 4_1:-86909361 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 4_1:-86910153 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 4_1:-86910259 None:intergenic
GATATGTTAGGCAAATGGTT+TGG 0.516188 4_1:+86911216 Msa0581510:three_prime_UTR
AACAATAAAACAACTCAAGA+AGG 0.516329 4_1:+86910933 Msa0581510:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 4_1:+86910352 Msa0581510:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 4_1:+86909114 Msa0581510:intron
ATACTCGAACAACACCGATC+CGG 0.522042 4_1:+86909149 Msa0581510:CDS
GACAACTTAACTTAAAGCTA+AGG 0.522311 4_1:-86906346 None:intergenic
TATCCAAATCATGTTGGCAT+TGG 0.526730 4_1:-86911197 None:intergenic
AGTCGTCGATAAAATGCCTA+AGG 0.528289 4_1:-86910368 None:intergenic
ATCCATTGAGAAGGTGTGAA+TGG 0.529637 4_1:-86908212 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 4_1:-86909369 None:intergenic
CCCGAATTCATTGTTTCTCG+AGG 0.531393 4_1:-86910226 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 4_1:+86910684 Msa0581510:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 4_1:-86907426 None:intergenic
ACTAGACAAGGTTTAAGGTA+AGG 0.535041 4_1:-86907034 None:intergenic
TATAGTTCTGGAAGCATGCA+TGG 0.536987 4_1:+86908185 Msa0581510:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 4_1:+86910802 Msa0581510:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 4_1:+86909187 Msa0581510:CDS
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 4_1:-86909163 None:intergenic
TCATCTATTGTTGTTCCTGG+TGG 0.540775 4_1:+86909417 Msa0581510:CDS
AAATCATGTTGGCATTGGTA+TGG 0.546597 4_1:-86911192 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 4_1:+86910701 Msa0581510:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 4_1:+86910411 Msa0581510:CDS
ATTCACACCTTCTCAATGGA+TGG 0.550208 4_1:+86908214 Msa0581510:CDS
GAGATGGTTTGTTTAAGGTG+GGG 0.558273 4_1:+86911376 Msa0581510:three_prime_UTR
TGTTGTAACTAGACATAGGA+TGG 0.561408 4_1:-86907422 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.562452 4_1:+86908220 Msa0581510:CDS
TCAGACTGCATGTCGAGCTC+CGG 0.562970 4_1:-86910447 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 4_1:-86908321 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 4_1:-86909411 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 4_1:+86910972 Msa0581510:CDS
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 4_1:-86910495 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 4_1:+86910798 Msa0581510:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 4_1:+86909306 Msa0581510:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 4_1:-86910150 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 4_1:-86909319 None:intergenic
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 4_1:+86909177 Msa0581510:CDS
CAACACTAGTGAGAGGATGC+AGG 0.577864 4_1:+86910104 Msa0581510:CDS
AATAAATGGTACAACAACAA+TGG 0.583357 4_1:+86907153 Msa0581510:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 4_1:+86909276 Msa0581510:CDS
AAGTGATGTTGGTTGGAGTG+TGG 0.586126 4_1:+86911328 Msa0581510:three_prime_UTR
GGATGGGGAGGATTCCATCT+GGG 0.587603 4_1:+86909126 Msa0581510:CDS
ACTTCAACCATTACTCCAAG+TGG 0.590678 4_1:+86909354 Msa0581510:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 4_1:+86910759 Msa0581510:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 4_1:+86910671 Msa0581510:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 4_1:-86910840 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 4_1:-86910289 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.603882 4_1:-86908361 None:intergenic
TTGGAAACAGTGTTGCCACC+AGG 0.605229 4_1:-86909432 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 4_1:+86909232 Msa0581510:CDS
AAGAACCCTTTGGAAAAGGA+AGG 0.611392 4_1:-86906966 None:intergenic
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 4_1:+86910905 Msa0581510:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 4_1:+86910904 Msa0581510:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 4_1:-86910413 None:intergenic
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 4_1:-86910344 None:intergenic
CACATCTCATGAGAGAGAGA+AGG 0.619685 4_1:-86906943 None:intergenic
GGTGAAACAAGAAACCAGAA+TGG 0.620405 4_1:-86906325 None:intergenic
CTAACATATCCAAATCATGT+TGG 0.620967 4_1:-86911203 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 4_1:-86908221 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 4_1:+86910155 Msa0581510:CDS
CAACATCATAACCGCTCAGG+TGG 0.625010 4_1:+86910414 Msa0581510:CDS
GTGTGCAAAGCTAAGAGTGT+TGG 0.626716 4_1:-86909451 None:intergenic
GTCGTCGATAAAATGCCTAA+GGG 0.628833 4_1:-86910367 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 4_1:+86910891 Msa0581510:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 4_1:+86909272 Msa0581510:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 4_1:-86910292 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 4_1:-86910265 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 4_1:-86910711 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 4_1:+86909166 Msa0581510:CDS
AGAATAACAACACTAGTGAG+AGG 0.653602 4_1:+86910097 Msa0581510:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 4_1:+86909160 Msa0581510:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 4_1:-86909140 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 4_1:-86910796 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 4_1:+86910108 Msa0581510:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 4_1:+86910580 Msa0581510:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 4_1:-86910505 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 4_1:+86910687 Msa0581510:CDS
ATAGGCATAAGCAAATGATG+AGG 0.701369 4_1:-86908290 None:intergenic
TGCGAAAGGCATATGAACAG+AGG 0.714010 4_1:+86909246 Msa0581510:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 4_1:+86908188 Msa0581510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG + chr4_1:86907503-86907522 Msa0581510:intron 0.0%
!! TTTAGAAACAAAAAAAAAAA+AGG - chr4_1:86907077-86907096 None:intergenic 10.0%
!!! TTTTTTTTTTTGTTTCTAAA+TGG + chr4_1:86907077-86907096 Msa0581510:exon 10.0%
!!! AAATTTATATATTTTGGATT+TGG + chr4_1:86907509-86907528 Msa0581510:intron 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG - chr4_1:86907942-86907961 None:intergenic 10.0%
!!! TTTTGTTTTGGTTTTTTTTT+GGG - chr4_1:86906299-86906318 None:intergenic 15.0%
!!! TTTTGTTTTGGTTTTTTTTT+GGG - chr4_1:86906299-86906318 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG + chr4_1:86907541-86907560 Msa0581510:intron 15.0%
!! TATCTTTGTTAGTATTAATT+AGG - chr4_1:86908410-86908429 None:intergenic 15.0%
!!! ATTTTTTTTTCCAATCATTT+TGG + chr4_1:86908523-86908542 Msa0581510:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG + chr4_1:86908715-86908734 Msa0581510:intron 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG - chr4_1:86908768-86908787 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG - chr4_1:86908769-86908788 None:intergenic 15.0%
!! TTGCATTATATTAGAAAATA+AGG + chr4_1:86908769-86908788 Msa0581510:intron 15.0%
!!! AGTTATTTTTAACAAAATCA+AGG - chr4_1:86909594-86909613 None:intergenic 15.0%
!! ATGATATTACATTACATATA+TGG + chr4_1:86911121-86911140 Msa0581510:three_prime_UTR 15.0%
!! CTTTGCAAAGATAAAATAAT+TGG - chr4_1:86906267-86906286 None:intergenic 20.0%
!!! GTTTTGTTTTGGTTTTTTTT+TGG - chr4_1:86906300-86906319 None:intergenic 20.0%
!!! AAATAATTTTTAGGCAAACA+AGG - chr4_1:86906510-86906529 None:intergenic 20.0%
!! AGATATATAATATAGGAAAG+AGG - chr4_1:86906772-86906791 None:intergenic 20.0%
!! ATTGGAGAGATATATAATAT+AGG - chr4_1:86906779-86906798 None:intergenic 20.0%
!! CTTTGCAAAGATAAAATAAT+TGG - chr4_1:86906267-86906286 None:intergenic 20.0%
!!! GTTTTGTTTTGGTTTTTTTT+TGG - chr4_1:86906300-86906319 None:intergenic 20.0%
!! ATAAAAACAAAAACTAGACA+AGG - chr4_1:86907049-86907068 None:intergenic 20.0%
!! ATAAGGTTGTTATAGTTATA+AGG + chr4_1:86907590-86907609 Msa0581510:intron 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG + chr4_1:86907646-86907665 Msa0581510:intron 20.0%
!! ATTTATGAGCTATAATATGT+AGG + chr4_1:86907834-86907853 Msa0581510:intron 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG + chr4_1:86907861-86907880 Msa0581510:intron 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG - chr4_1:86907939-86907958 None:intergenic 20.0%
!!! AATCAACTTTTTTTGTGTTT+TGG + chr4_1:86908085-86908104 Msa0581510:intron 20.0%
!! CTAACAAAGATAAACATTAT+TGG + chr4_1:86908418-86908437 Msa0581510:intron 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG + chr4_1:86908704-86908723 Msa0581510:intron 20.0%
!! AAATCAAATTTGTGTTTGAA+GGG + chr4_1:86908794-86908813 Msa0581510:intron 20.0%
!!! TACATATTGATTAGTACTAT+AGG - chr4_1:86909636-86909655 None:intergenic 20.0%
!! TATAGTACTAATCAATATGT+AGG + chr4_1:86909635-86909654 Msa0581510:intron 20.0%
!! TTATATTCCGTTATTCATTT+AGG + chr4_1:86909869-86909888 Msa0581510:intron 20.0%
!! TATATTCCGTTATTCATTTA+GGG + chr4_1:86909870-86909889 Msa0581510:intron 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG + chr4_1:86909988-86910007 Msa0581510:intron 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG + chr4_1:86909989-86910008 Msa0581510:intron 20.0%
!!! TTTGTTTTTTGTTTTTGAGA+TGG + chr4_1:86911360-86911379 Msa0581510:three_prime_UTR 20.0%
!!! GAATGGTTTTTGTTTTGTTT+TGG - chr4_1:86906311-86906330 None:intergenic 25.0%
! AAACAAAACAAAAACCATTC+TGG + chr4_1:86906311-86906330 Msa0581510:five_prime_UTR 25.0%
! TGTTTCATTCAAATATCGAA+TGG + chr4_1:86906545-86906564 Msa0581510:intron 25.0%
! TATAATATAGGAAAGAGGTT+GGG - chr4_1:86906767-86906786 None:intergenic 25.0%
! ATATAATATAGGAAAGAGGT+TGG - chr4_1:86906768-86906787 None:intergenic 25.0%
!!! AGAATGGTTTTGTTTTGTTT+TGG - chr4_1:86906841-86906860 None:intergenic 25.0%
! AAAACAAAACAAAACCATTC+TGG + chr4_1:86906840-86906859 Msa0581510:intron 25.0%
!! TAAGGAAATGAAGTATCTTA+TGG - chr4_1:86907019-86907038 None:intergenic 25.0%
!!! TTTTGTTTCTAAATGGATCT+TGG + chr4_1:86907084-86907103 Msa0581510:exon 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG + chr4_1:86907139-86907158 Msa0581510:CDS 25.0%
!!! TACCATTTATTTTTTGACTC+AGG - chr4_1:86907144-86907163 None:intergenic 25.0%
! AATAAATGGTACAACAACAA+TGG + chr4_1:86907153-86907172 Msa0581510:CDS 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG - chr4_1:86907351-86907370 None:intergenic 25.0%
!!! CAGGTACAACATTTTTTTTT+AGG + chr4_1:86907451-86907470 Msa0581510:intron 25.0%
! AATCTATATGGTATCCATTT+GGG + chr4_1:86907553-86907572 Msa0581510:intron 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG + chr4_1:86907679-86907698 Msa0581510:intron 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG - chr4_1:86907899-86907918 None:intergenic 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG - chr4_1:86908397-86908416 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG - chr4_1:86908398-86908417 None:intergenic 25.0%
! TTGTTAGTATTAATTAGGCA+AGG - chr4_1:86908405-86908424 None:intergenic 25.0%
! AATTTAAGGACCAAAATGAT+TGG - chr4_1:86908536-86908555 None:intergenic 25.0%
! AATCTCACACATTCAATTTA+AGG - chr4_1:86908550-86908569 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG - chr4_1:86908586-86908605 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG - chr4_1:86908587-86908606 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG + chr4_1:86908588-86908607 Msa0581510:intron 25.0%
! ATGTACCAAAATTGCAAAAA+GGG + chr4_1:86908589-86908608 Msa0581510:intron 25.0%
! CTTCAAACACAAATTTGATT+TGG - chr4_1:86908795-86908814 None:intergenic 25.0%
! CAAATCAAATTTGTGTTTGA+AGG + chr4_1:86908793-86908812 Msa0581510:intron 25.0%
! TGAAAAAACAAATTGATCGT+TGG + chr4_1:86908899-86908918 Msa0581510:intron 25.0%
! TAGTTGAAAACTAACAATCA+AGG - chr4_1:86909016-86909035 None:intergenic 25.0%
! AACATTAAACATATCATGTG+AGG + chr4_1:86909066-86909085 Msa0581510:intron 25.0%
! AATAAGGTTGTTCATATTCT+TGG - chr4_1:86909487-86909506 None:intergenic 25.0%
! AAGAATATGAACAACCTTAT+TGG + chr4_1:86909486-86909505 Msa0581510:CDS 25.0%
!! TGTATTTTATGTCTCTATGA+CGG + chr4_1:86909771-86909790 Msa0581510:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG - chr4_1:86909815-86909834 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG + chr4_1:86910055-86910074 Msa0581510:intron 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG - chr4_1:86910174-86910193 None:intergenic 25.0%
! TAATTGGATTCCAATAACTT+GGG + chr4_1:86910671-86910690 Msa0581510:CDS 25.0%
! AACAATAAAACAACTCAAGA+AGG + chr4_1:86910933-86910952 Msa0581510:CDS 25.0%
! AAAAAACAGTAAAGTGATGT+TGG + chr4_1:86911317-86911336 Msa0581510:three_prime_UTR 25.0%
!!! TTTTTGAGATGGTTTGTTTA+AGG + chr4_1:86911371-86911390 Msa0581510:three_prime_UTR 25.0%
GACAACTTAACTTAAAGCTA+AGG - chr4_1:86906349-86906368 None:intergenic 30.0%
ATAATATAGGAAAGAGGTTG+GGG - chr4_1:86906766-86906785 None:intergenic 30.0%
TTTGTGACAACTTAAAGCTA+AGG - chr4_1:86906878-86906897 None:intergenic 30.0%
CAAAAACTAGACAAGGTTTA+AGG - chr4_1:86907042-86907061 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG + chr4_1:86907183-86907202 Msa0581510:CDS 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG + chr4_1:86907297-86907316 Msa0581510:CDS 30.0%
! ATAAGACAATGCAGCATTTT+GGG - chr4_1:86907391-86907410 None:intergenic 30.0%
TTTCTGTTGTAACTAGACAT+AGG - chr4_1:86907429-86907448 None:intergenic 30.0%
TCTAGTTACAACAGAAATAC+AGG + chr4_1:86907432-86907451 Msa0581510:CDS 30.0%
GAATCTATATGGTATCCATT+TGG + chr4_1:86907552-86907571 Msa0581510:intron 30.0%
ATCTATATGGTATCCATTTG+GGG + chr4_1:86907554-86907573 Msa0581510:intron 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG - chr4_1:86907570-86907589 None:intergenic 30.0%
GGGGAGCTAAAAAATTTATA+AGG + chr4_1:86907573-86907592 Msa0581510:intron 30.0%
TGTCAAGAAAAAAGGAACAT+AGG + chr4_1:86907687-86907706 Msa0581510:intron 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG + chr4_1:86907755-86907774 Msa0581510:intron 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG + chr4_1:86907756-86907775 Msa0581510:intron 30.0%
! TTTTTGCACAGTATACTAGA+GGG + chr4_1:86907796-86907815 Msa0581510:intron 30.0%
! AAGAGCACACAACAAAAAAA+AGG - chr4_1:86908049-86908068 None:intergenic 30.0%
CATCAAGGTAAAGTCAAAAA+AGG - chr4_1:86908140-86908159 None:intergenic 30.0%
ACAGTATTCAACAAACATCA+AGG - chr4_1:86908155-86908174 None:intergenic 30.0%
TTGTTGAATACTGTTTGAAC+AGG + chr4_1:86908161-86908180 Msa0581510:intron 30.0%
TGTACCAAAATTGCAAAAAG+GGG + chr4_1:86908590-86908609 Msa0581510:intron 30.0%
TGTTTCTTATAGTTTAGTGC+AGG - chr4_1:86908639-86908658 None:intergenic 30.0%
GAATCATTCAAAAGTCAATG+TGG + chr4_1:86908849-86908868 Msa0581510:intron 30.0%
ATTAAACATATCATGTGAGG+TGG + chr4_1:86909069-86909088 Msa0581510:intron 30.0%
!! TATGTTTTTGATTGATGCAG+TGG + chr4_1:86909104-86909123 Msa0581510:intron 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG + chr4_1:86909105-86909124 Msa0581510:intron 30.0%
AAGCATTATCTTGTCCAATA+AGG - chr4_1:86909503-86909522 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG - chr4_1:86909763-86909782 None:intergenic 30.0%
TGTAGTCCCTAAATGAATAA+CGG - chr4_1:86909879-86909898 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+CGG + chr4_1:86909914-86909933 Msa0581510:intron 30.0%
TGTGTATAAGGGATAAATTC+AGG + chr4_1:86910000-86910019 Msa0581510:intron 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG - chr4_1:86910541-86910560 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG + chr4_1:86910578-86910597 Msa0581510:CDS 30.0%
GAAATAGACCCTATTCAAAT+GGG + chr4_1:86910579-86910598 Msa0581510:CDS 30.0%
AAATAGACCCTATTCAAATG+GGG + chr4_1:86910580-86910599 Msa0581510:CDS 30.0%
ATACTACAAAGCAAGCTAAT+TGG + chr4_1:86910655-86910674 Msa0581510:CDS 30.0%
CTAATTGGATTCCAATAACT+TGG + chr4_1:86910670-86910689 Msa0581510:CDS 30.0%
AATGCAAATGATGATCACTA+TGG + chr4_1:86910753-86910772 Msa0581510:CDS 30.0%
CTAACATATCCAAATCATGT+TGG - chr4_1:86911206-86911225 None:intergenic 30.0%
! CAACATGATTTGGATATGTT+AGG + chr4_1:86911204-86911223 Msa0581510:three_prime_UTR 30.0%
ATTTGGATATGTTAGGCAAA+TGG + chr4_1:86911211-86911230 Msa0581510:three_prime_UTR 30.0%
ATGTTTCATGTGATGTTTGT+TGG + chr4_1:86911255-86911274 Msa0581510:three_prime_UTR 30.0%
TGTTTCATGTGATGTTTGTT+GGG + chr4_1:86911256-86911275 Msa0581510:three_prime_UTR 30.0%
TAATATAGGAAAGAGGTTGG+GGG - chr4_1:86906765-86906784 None:intergenic 35.0%
AATAGTACAGAAGAACCCTT+TGG - chr4_1:86906979-86906998 None:intergenic 35.0%
! ACTAGACAAGGTTTAAGGTA+AGG - chr4_1:86907037-86907056 None:intergenic 35.0%
! TGTTTCTAAATGGATCTTGG+TGG + chr4_1:86907087-86907106 Msa0581510:exon 35.0%
! CATAAGACAATGCAGCATTT+TGG - chr4_1:86907392-86907411 None:intergenic 35.0%
TGTTGTAACTAGACATAGGA+TGG - chr4_1:86907425-86907444 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG + chr4_1:86907612-86907631 Msa0581510:intron 35.0%
! GTTTTTGCACAGTATACTAG+AGG + chr4_1:86907795-86907814 Msa0581510:intron 35.0%
ATGTAAGGAGGATGTAGAAA+AGG - chr4_1:86907927-86907946 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG + chr4_1:86908173-86908192 Msa0581510:intron 35.0%
ATAGGCATAAGCAAATGATG+AGG - chr4_1:86908293-86908312 None:intergenic 35.0%
TAACTGCACATACATGCATT+TGG - chr4_1:86908371-86908390 None:intergenic 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG - chr4_1:86908597-86908616 None:intergenic 35.0%
AAATTGCAAAAAGGGGCTAA+TGG + chr4_1:86908597-86908616 Msa0581510:intron 35.0%
GTTGTAGATCAGTTTAGTCT+TGG - chr4_1:86908666-86908685 None:intergenic 35.0%
CTTGACAAGAGATACATTCA+AGG + chr4_1:86908685-86908704 Msa0581510:intron 35.0%
TAAGGACTATAGTGATAGCA+AGG + chr4_1:86908733-86908752 Msa0581510:intron 35.0%
ATATGTGAATTGTTACGCTG+TGG - chr4_1:86908829-86908848 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG + chr4_1:86909038-86909057 Msa0581510:intron 35.0%
! GCAGTACTTTTGATCAACAA+CGG - chr4_1:86909229-86909248 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG + chr4_1:86909232-86909251 Msa0581510:CDS 35.0%
AGTAGTAGTAGCTGTATTTG+TGG - chr4_1:86909334-86909353 None:intergenic 35.0%
GGAACAACAATAGATGAAGA+AGG - chr4_1:86909414-86909433 None:intergenic 35.0%
! TCTTCATCTATTGTTGTTCC+TGG + chr4_1:86909414-86909433 Msa0581510:CDS 35.0%
TCATATTCTTGGAATGTTCC+TGG - chr4_1:86909476-86909495 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG + chr4_1:86909707-86909726 Msa0581510:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG + chr4_1:86909708-86909727 Msa0581510:intron 35.0%
CTAATCTAATCACATTCCGT+TGG - chr4_1:86909933-86909952 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG + chr4_1:86910097-86910116 Msa0581510:CDS 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG - chr4_1:86910156-86910175 None:intergenic 35.0%
TCCTCGAGAAACAATGAATT+CGG + chr4_1:86910225-86910244 Msa0581510:CDS 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG - chr4_1:86910535-86910554 None:intergenic 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG - chr4_1:86910564-86910583 None:intergenic 35.0%
ATTGAACTCTCCCAAGTTAT+TGG - chr4_1:86910684-86910703 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG + chr4_1:86910683-86910702 Msa0581510:CDS 35.0%
ATAACTTGGGAGAGTTCAAT+GGG + chr4_1:86910684-86910703 Msa0581510:CDS 35.0%
GTGATCATCATTTGCATTGT+AGG - chr4_1:86910751-86910770 None:intergenic 35.0%
ACCATCAGTCATGAGATTTA+GGG - chr4_1:86910802-86910821 None:intergenic 35.0%
AACCATCAGTCATGAGATTT+AGG - chr4_1:86910803-86910822 None:intergenic 35.0%
TAAATCTCATGACTGATGGT+TGG + chr4_1:86910802-86910821 Msa0581510:CDS 35.0%
AAATCTCATGACTGATGGTT+GGG + chr4_1:86910803-86910822 Msa0581510:CDS 35.0%
AATCACAATAGTCCTCCAAT+TGG + chr4_1:86910828-86910847 Msa0581510:CDS 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG - chr4_1:86910924-86910943 None:intergenic 35.0%
AGTTTGTGCAATGATCTTCT+AGG + chr4_1:86910960-86910979 Msa0581510:CDS 35.0%
ATACTTCCTTTACTCCTTAG+AGG + chr4_1:86911000-86911019 Msa0581510:CDS 35.0%
TTCTTCATCTTGTTCCTCTA+AGG - chr4_1:86911017-86911036 None:intergenic 35.0%
!! AAATCATGTTGGCATTGGTA+TGG - chr4_1:86911195-86911214 None:intergenic 35.0%
ATACCAATGCCAACATGATT+TGG + chr4_1:86911194-86911213 Msa0581510:three_prime_UTR 35.0%
TATCCAAATCATGTTGGCAT+TGG - chr4_1:86911200-86911219 None:intergenic 35.0%
GATATGTTAGGCAAATGGTT+TGG + chr4_1:86911216-86911235 Msa0581510:three_prime_UTR 35.0%
AACAGTAAAGTGATGTTGGT+TGG + chr4_1:86911321-86911340 Msa0581510:three_prime_UTR 35.0%
!! TTGAGATGGTTTGTTTAAGG+TGG + chr4_1:86911374-86911393 Msa0581510:three_prime_UTR 35.0%
!! TGAGATGGTTTGTTTAAGGT+GGG + chr4_1:86911375-86911394 Msa0581510:three_prime_UTR 35.0%
GGTGAAACAAGAAACCAGAA+TGG - chr4_1:86906328-86906347 None:intergenic 40.0%
AATATAGGAAAGAGGTTGGG+GGG - chr4_1:86906764-86906783 None:intergenic 40.0%
GGTGAAACAAGAAACCAGAA+TGG - chr4_1:86906328-86906347 None:intergenic 40.0%
! ATGTGCCTTCCTTTTCCAAA+GGG + chr4_1:86906961-86906980 Msa0581510:five_prime_UTR 40.0%
! AAGAACCCTTTGGAAAAGGA+AGG - chr4_1:86906969-86906988 None:intergenic 40.0%
! ACAGAAGAACCCTTTGGAAA+AGG - chr4_1:86906973-86906992 None:intergenic 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG + chr4_1:86907107-86907126 Msa0581510:CDS 40.0%
TGGTACAACAACAATGGATC+TGG + chr4_1:86907159-86907178 Msa0581510:CDS 40.0%
TGATTCTACAGTACTGTTGG+AGG + chr4_1:86907615-86907634 Msa0581510:intron 40.0%
GATTCTACAGTACTGTTGGA+GGG + chr4_1:86907616-86907635 Msa0581510:intron 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG + chr4_1:86907762-86907781 Msa0581510:intron 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG + chr4_1:86907763-86907782 Msa0581510:intron 40.0%
AAAACCCATCTCCCTAAAAC+AGG - chr4_1:86907770-86907789 None:intergenic 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG + chr4_1:86908185-86908204 Msa0581510:CDS 40.0%
! ATCCATTGAGAAGGTGTGAA+TGG - chr4_1:86908215-86908234 None:intergenic 40.0%
ATTCACACCTTCTCAATGGA+TGG + chr4_1:86908214-86908233 Msa0581510:CDS 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG - chr4_1:86908311-86908330 None:intergenic 40.0%
AGATAAGCCAGCAGAATCAA+GGG - chr4_1:86908324-86908343 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG - chr4_1:86908325-86908344 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG - chr4_1:86908364-86908383 None:intergenic 40.0%
GGTTGAAAACATGTCATGTG+AGG + chr4_1:86908920-86908939 Msa0581510:intron 40.0%
TGAAAACATGTCATGTGAGG+TGG + chr4_1:86908923-86908942 Msa0581510:intron 40.0%
TGTGAGGTGGAGTAGTAATA+TGG + chr4_1:86908936-86908955 Msa0581510:intron 40.0%
AAACATATCATGTGAGGTGG+TGG + chr4_1:86909072-86909091 Msa0581510:intron 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG + chr4_1:86909109-86909128 Msa0581510:intron 40.0%
TTTGATTGATGCAGTGGGAT+GGG + chr4_1:86909110-86909129 Msa0581510:intron 40.0%
GGAGAACAGATGGAAAGAAA+TGG + chr4_1:86909187-86909206 Msa0581510:CDS 40.0%
ACTTCAACCATTACTCCAAG+TGG + chr4_1:86909354-86909373 Msa0581510:CDS 40.0%
TGATGAACCACTTGGAGTAA+TGG - chr4_1:86909364-86909383 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG - chr4_1:86909372-86909391 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG + chr4_1:86909417-86909436 Msa0581510:CDS 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG - chr4_1:86909541-86909560 None:intergenic 40.0%
AGAATTGTGACTGAACATCG+TGG + chr4_1:86909843-86909862 Msa0581510:intron 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG - chr4_1:86910157-86910176 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG + chr4_1:86910155-86910174 Msa0581510:CDS 40.0%
CCTCGAGAAACAATGAATTC+GGG + chr4_1:86910226-86910245 Msa0581510:CDS 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG - chr4_1:86910268-86910287 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG - chr4_1:86910269-86910288 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG - chr4_1:86910278-86910297 None:intergenic 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG - chr4_1:86910279-86910298 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG - chr4_1:86910316-86910335 None:intergenic 40.0%
GTCGTCGATAAAATGCCTAA+GGG - chr4_1:86910370-86910389 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG - chr4_1:86910371-86910390 None:intergenic 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG - chr4_1:86910396-86910415 None:intergenic 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG - chr4_1:86910397-86910416 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG + chr4_1:86910547-86910566 Msa0581510:CDS 40.0%
CACCTAACCCCATTTGAATA+GGG - chr4_1:86910590-86910609 None:intergenic 40.0%
ACACCTAACCCCATTTGAAT+AGG - chr4_1:86910591-86910610 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG + chr4_1:86910591-86910610 Msa0581510:CDS 40.0%
AATGATGATCACTATGGCAG+AGG + chr4_1:86910759-86910778 Msa0581510:CDS 40.0%
ATCAGTCATGAGATTTAGGG+CGG - chr4_1:86910799-86910818 None:intergenic 40.0%
GTCCTTCAAAAGACTGCATT+CGG + chr4_1:86910867-86910886 Msa0581510:CDS 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG - chr4_1:86910872-86910891 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG + chr4_1:86910972-86910991 Msa0581510:CDS 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG - chr4_1:86911009-86911028 None:intergenic 40.0%
! GATGTTTGTTGGGAGTGATT+TGG + chr4_1:86911266-86911285 Msa0581510:three_prime_UTR 40.0%
!! GAGATGGTTTGTTTAAGGTG+GGG + chr4_1:86911376-86911395 Msa0581510:three_prime_UTR 40.0%
AGAAGGAAACTGACTGGACT+TGG - chr4_1:86906738-86906757 None:intergenic 45.0%
ATATAGGAAAGAGGTTGGGG+GGG - chr4_1:86906763-86906782 None:intergenic 45.0%
CACATCTCATGAGAGAGAGA+AGG - chr4_1:86906946-86906965 None:intergenic 45.0%
! GATGTGCCTTCCTTTTCCAA+AGG + chr4_1:86906960-86906979 Msa0581510:five_prime_UTR 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG + chr4_1:86907102-86907121 Msa0581510:CDS 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG + chr4_1:86907627-86907646 Msa0581510:intron 45.0%
GACCATTCACACCTTCTCAA+TGG + chr4_1:86908210-86908229 Msa0581510:CDS 45.0%
ACCTTCTCAATGGATGGAGT+TGG + chr4_1:86908220-86908239 Msa0581510:CDS 45.0%
TCCAACTCCATCCATTGAGA+AGG - chr4_1:86908224-86908243 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG + chr4_1:86908229-86908248 Msa0581510:CDS 45.0%
AGAAAAGCCCTTGATTCTGC+TGG + chr4_1:86908314-86908333 Msa0581510:CDS 45.0%
TTGCAAAAAGGGGCTAATGG+AGG + chr4_1:86908600-86908619 Msa0581510:intron 45.0%
TTGATTGATGCAGTGGGATG+GGG + chr4_1:86909111-86909130 Msa0581510:intron 45.0%
TGTTGTTCGAGTATCCCAGA+TGG - chr4_1:86909143-86909162 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG + chr4_1:86909149-86909168 Msa0581510:CDS 45.0%
! TGCGAAAGGCATATGAACAG+AGG + chr4_1:86909246-86909265 Msa0581510:CDS 45.0%
TGTATTTGTGGTTCCACCAG+TGG - chr4_1:86909322-86909341 None:intergenic 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG - chr4_1:86909454-86909473 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG - chr4_1:86909535-86909554 None:intergenic 45.0%
! CCCGAATTCATTGTTTCTCG+AGG - chr4_1:86910229-86910248 None:intergenic 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG - chr4_1:86910262-86910281 None:intergenic 45.0%
ACAGAAAACCTCCACTTTGC+TGG + chr4_1:86910281-86910300 Msa0581510:CDS 45.0%
CAGAAAACCTCCACTTTGCT+GGG + chr4_1:86910282-86910301 Msa0581510:CDS 45.0%
TGAAGATGAACCGAAGGTTC+GGG - chr4_1:86910310-86910329 None:intergenic 45.0%
GTGAAGATGAACCGAAGGTT+CGG - chr4_1:86910311-86910330 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG + chr4_1:86910488-86910507 Msa0581510:CDS 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG - chr4_1:86910498-86910517 None:intergenic 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG - chr4_1:86910532-86910551 None:intergenic 45.0%
GACCCTATTCAAATGGGGTT+AGG + chr4_1:86910585-86910604 Msa0581510:CDS 45.0%
AGATGAAGAACCTCTCCAAG+TGG - chr4_1:86910714-86910733 None:intergenic 45.0%
GCCCTAAATCTCATGACTGA+TGG + chr4_1:86910798-86910817 Msa0581510:CDS 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG - chr4_1:86910865-86910884 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG + chr4_1:86910891-86910910 Msa0581510:CDS 45.0%
! AAGTGATGTTGGTTGGAGTG+TGG + chr4_1:86911328-86911347 Msa0581510:three_prime_UTR 45.0%
!!! TATTAGATTAAATAATTTTT+AGG - chr4_1:86906519-86906538 None:intergenic 5.0%
!!! AAAAAATATTAGATATTTTT+AGG - chr4_1:86906650-86906669 None:intergenic 5.0%
!! AGTTCTGGAAGCATGCATGG+AGG + chr4_1:86908188-86908207 Msa0581510:CDS 50.0%
TCTGTTCTCCTACACCTTCC+TGG - chr4_1:86909177-86909196 None:intergenic 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG + chr4_1:86909177-86909196 Msa0581510:CDS 50.0%
CCACAGGCTTTCTTGAACGA+TGG - chr4_1:86909275-86909294 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG + chr4_1:86909272-86909291 Msa0581510:CDS 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG + chr4_1:86909276-86909295 Msa0581510:CDS 50.0%
TTGGAAACAGTGTTGCCACC+AGG - chr4_1:86909435-86909454 None:intergenic 50.0%
!! CACTCTTAGCTTTGCACACC+AGG + chr4_1:86909455-86909474 Msa0581510:CDS 50.0%
TGTCTCTATGACGGCTGTTG+AGG + chr4_1:86909780-86909799 Msa0581510:intron 50.0%
CAACACTAGTGAGAGGATGC+AGG + chr4_1:86910104-86910123 Msa0581510:CDS 50.0%
ACTAGTGAGAGGATGCAGGA+TGG + chr4_1:86910108-86910127 Msa0581510:CDS 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG - chr4_1:86910153-86910172 None:intergenic 50.0%
AACCCTACAAACCGAGATGC+AGG + chr4_1:86910333-86910352 Msa0581510:CDS 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG - chr4_1:86910338-86910357 None:intergenic 50.0%
ATTGCTGAGAGCCTGCATCT+CGG - chr4_1:86910347-86910366 None:intergenic 50.0%
CACCAACATCATAACCGCTC+AGG + chr4_1:86910411-86910430 Msa0581510:CDS 50.0%
CACCTGAGCGGTTATGATGT+TGG - chr4_1:86910416-86910435 None:intergenic 50.0%
CAACATCATAACCGCTCAGG+TGG + chr4_1:86910414-86910433 Msa0581510:CDS 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG + chr4_1:86910424-86910443 Msa0581510:CDS 50.0%
GCCAAGAAAAACCACCTGAG+CGG - chr4_1:86910428-86910447 None:intergenic 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG + chr4_1:86910428-86910447 Msa0581510:CDS 50.0%
AGCTCGACATGCAGTCTGAT+AGG + chr4_1:86910451-86910470 Msa0581510:CDS 50.0%
ACTTGGGAGAGTTCAATGGG+TGG + chr4_1:86910687-86910706 Msa0581510:CDS 50.0%
AGTTCAATGGGTGGTCCACT+TGG + chr4_1:86910696-86910715 Msa0581510:CDS 50.0%
GTTGGCGATGATCCAATTGG+AGG - chr4_1:86910843-86910862 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG + chr4_1:86910843-86910862 Msa0581510:CDS 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG - chr4_1:86910861-86910880 None:intergenic 50.0%
TTCTGCCCTTGGACTACTAC+CGG - chr4_1:86910913-86910932 None:intergenic 50.0%
GGGGAGAGAAGGAAACTGAC+TGG - chr4_1:86906744-86906763 None:intergenic 55.0%
ATTGATGCAGTGGGATGGGG+AGG + chr4_1:86909114-86909133 Msa0581510:intron 55.0%
GGATGGGGAGGATTCCATCT+GGG + chr4_1:86909126-86909145 Msa0581510:CDS 55.0%
AACAACACCGATCCGGAACC+AGG + chr4_1:86909156-86909175 Msa0581510:CDS 55.0%
ACACCTTCCTGGTTCCGGAT+CGG - chr4_1:86909166-86909185 None:intergenic 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG + chr4_1:86909166-86909185 Msa0581510:CDS 55.0%
CTCCTACACCTTCCTGGTTC+CGG - chr4_1:86909171-86909190 None:intergenic 55.0%
AAGCCTGTGGAAGGCCAATC+TGG + chr4_1:86909285-86909304 Msa0581510:CDS 55.0%
CTGCTGCCAACACCATCAAC+AGG + chr4_1:86909526-86909545 Msa0581510:CDS 55.0%
ACGGCTCAGATCATAGTCGC+AGG - chr4_1:86909744-86909763 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG + chr4_1:86909743-86909762 Msa0581510:intron 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG - chr4_1:86910144-86910163 None:intergenic 55.0%
TTGCTGGGAACCCGAACCTT+CGG + chr4_1:86910297-86910316 Msa0581510:CDS 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG - chr4_1:86910339-86910358 None:intergenic 55.0%
CAGGCTCTCAGCAATCCCTT+AGG + chr4_1:86910352-86910371 Msa0581510:CDS 55.0%
TCAGACTGCATGTCGAGCTC+CGG - chr4_1:86910450-86910469 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG - chr4_1:86910508-86910527 None:intergenic 55.0%
AATGGGTGGTCCACTTGGAG+AGG + chr4_1:86910701-86910720 Msa0581510:CDS 55.0%
CCGGTTGGCGATGATCCAAT+TGG - chr4_1:86910846-86910865 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG + chr4_1:86910905-86910924 Msa0581510:CDS 55.0%
AAGAGGTTGGGGGGGAGAGA+AGG - chr4_1:86906755-86906774 None:intergenic 60.0%
GGGATGGGGAGGATTCCATC+TGG + chr4_1:86909125-86909144 Msa0581510:CDS 60.0%
ACACCGATCCGGAACCAGGA+AGG + chr4_1:86909160-86909179 Msa0581510:CDS 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG - chr4_1:86909291-86909310 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG + chr4_1:86909290-86909309 Msa0581510:CDS 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG - chr4_1:86909302-86909321 None:intergenic 60.0%
TTCCACCAGTGGTGAGAGCC+TGG - chr4_1:86909311-86909330 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG - chr4_1:86910135-86910154 None:intergenic 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG - chr4_1:86910292-86910311 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG - chr4_1:86910295-86910314 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG + chr4_1:86910904-86910923 Msa0581510:CDS 60.0%
TCTGGCCAGGCTCTCACCAC+TGG + chr4_1:86909303-86909322 Msa0581510:CDS 65.0%
GGCCAGGCTCTCACCACTGG+TGG + chr4_1:86909306-86909325 Msa0581510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86906264 86911450 86906264 ID=Msa0581510;Name=Msa0581510
chr4_1 mRNA 86906264 86911450 86906264 ID=Msa0581510-mRNA-1;Parent=Msa0581510;Name=Msa0581510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=290|1|1|1|0.75|0.6|5|431|639
chr4_1 exon 86906264 86906384 86906264 ID=Msa0581510-mRNA-1:exon:32246;Parent=Msa0581510-mRNA-1
chr4_1 exon 86906927 86907453 86906927 ID=Msa0581510-mRNA-1:exon:32247;Parent=Msa0581510-mRNA-1
chr4_1 exon 86908183 86908377 86908183 ID=Msa0581510-mRNA-1:exon:32248;Parent=Msa0581510-mRNA-1
chr4_1 exon 86909124 86909547 86909124 ID=Msa0581510-mRNA-1:exon:32249;Parent=Msa0581510-mRNA-1
chr4_1 exon 86910077 86911450 86910077 ID=Msa0581510-mRNA-1:exon:32250;Parent=Msa0581510-mRNA-1
chr4_1 five_prime_UTR 86906264 86906384 86906264 ID=Msa0581510-mRNA-1:five_prime_utr;Parent=Msa0581510-mRNA-1
chr4_1 five_prime_UTR 86906927 86907095 86906927 ID=Msa0581510-mRNA-1:five_prime_utr;Parent=Msa0581510-mRNA-1
chr4_1 CDS 86907096 86907453 86907096 ID=Msa0581510-mRNA-1:cds;Parent=Msa0581510-mRNA-1
chr4_1 CDS 86908183 86908377 86908183 ID=Msa0581510-mRNA-1:cds;Parent=Msa0581510-mRNA-1
chr4_1 CDS 86909124 86909547 86909124 ID=Msa0581510-mRNA-1:cds;Parent=Msa0581510-mRNA-1
chr4_1 CDS 86910077 86911019 86910077 ID=Msa0581510-mRNA-1:cds;Parent=Msa0581510-mRNA-1
chr4_1 three_prime_UTR 86911020 86911450 86911020 ID=Msa0581510-mRNA-1:three_prime_utr;Parent=Msa0581510-mRNA-1
Gene Sequence

>Msa0581510

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTCACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTATGCCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGTTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGAAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAG
Protein sequence

>Msa0581510

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLMPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTTTSTITPSGSSKQINSAAASPSSSIVVPGGNTVSNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNTSFTP*