AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097720 MtrunA17_Chr1g0152191 95.865 653 13 4 1 639 1 653 0.0 1263
Msa0097720 MtrunA17_Chr2g0300511 58.407 113 47 0 130 242 7 119 1.01e-40 152
Msa0097720 MtrunA17_Chr4g0070591 50.331 151 65 3 130 279 9 150 2.13e-40 151
Msa0097720 MtrunA17_Chr8g0343881 55.357 112 46 1 131 242 12 119 9.76e-40 149
Msa0097720 MtrunA17_Chr4g0021261 50.000 142 57 3 130 271 25 152 5.62e-37 141
Msa0097720 MtrunA17_Chr5g0409471 58.407 113 31 2 130 242 16 112 1.75e-36 139
Msa0097720 MtrunA17_Chr7g0265931 55.556 117 44 3 128 242 76 186 1.09e-32 130
Msa0097720 MtrunA17_Chr3g0127641 54.783 115 26 3 130 242 112 202 3.58e-32 131
Msa0097720 MtrunA17_Chr8g0351521 44.248 113 43 4 131 242 55 148 2.30e-20 94.4
Msa0097720 MtrunA17_Chr8g0351521 35.878 131 77 4 145 271 248 375 1.44e-11 67.0
Msa0097720 MtrunA17_Chr8g0351291 50.000 58 25 1 183 236 32 89 1.76e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097720 AT2G22840.1 38.907 604 199 21 27 597 22 488 4.15e-91 292
Msa0097720 AT4G37740.1 38.474 629 210 27 32 614 28 525 2.99e-85 277
Msa0097720 AT3G13960.1 51.852 135 48 2 130 264 16 133 2.56e-37 144
Msa0097720 AT2G36400.1 57.391 115 48 1 128 242 74 187 5.74e-34 134
Msa0097720 AT2G06200.2 45.342 161 75 4 130 278 45 204 1.91e-32 127
Msa0097720 AT2G06200.1 45.342 161 75 4 130 278 6 165 2.01e-32 125
Msa0097720 AT3G52910.1 51.240 121 47 2 128 242 80 194 2.99e-31 126
Msa0097720 AT4G24150.3 48.696 115 59 0 128 242 109 223 4.85e-26 111
Msa0097720 AT4G24150.2 48.696 115 59 0 128 242 147 261 1.05e-25 111
Msa0097720 AT5G53660.1 43.939 132 53 2 124 255 53 163 6.90e-24 104
Msa0097720 AT4G24150.1 45.714 140 51 5 128 242 147 286 1.77e-23 104
Msa0097720 AT2G45480.2 49.074 108 47 3 134 239 28 129 2.22e-22 98.6
Msa0097720 AT2G45480.3 49.074 108 47 3 134 239 28 129 1.47e-21 98.2
Msa0097720 AT2G45480.3 46.479 71 36 2 198 268 306 374 4.98e-13 72.0
Msa0097720 AT2G45480.1 49.074 108 47 3 134 239 26 127 1.49e-21 98.2
Msa0097720 AT2G45480.1 46.479 71 36 2 198 268 304 372 5.11e-13 72.0
Msa0097720 AT2G06200.3 46.237 93 44 2 192 278 1 93 1.77e-16 78.2

Find 182 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1_3:+3553342 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1_3:-3554536 Msa0097720:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 1_3:+3556643 None:intergenic
CTTTGCAAAGATAAAATAAT+TGG 0.217060 1_3:+3557225 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 1_3:+3554538 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1_3:+3553223 None:intergenic
CTCTCAAATATTAATATTTA+CGG 0.237286 1_3:+3552600 None:intergenic
TTCTTCATCTTGTTCCTCTA+AGG 0.256559 1_3:+3553009 None:intergenic
ATGATATTACATTACATATA+TGG 0.264920 1_3:-3552908 Msa0097720:three_prime_UTR
GTGATCATCATTTGCATTGT+AGG 0.266573 1_3:+3553275 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1_3:-3556930 Msa0097720:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.272838 1_3:-3554608 Msa0097720:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 1_3:+3554848 None:intergenic
ATACTTCCTTTACTCCTTAG+AGG 0.290780 1_3:-3553023 Msa0097720:exon
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1_3:-3553368 Msa0097720:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 1_3:+3554854 None:intergenic
CAGAAGAACCCTTTGGAAAA+AGG 0.303893 1_3:+3557062 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1_3:-3553742 Msa0097720:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1_3:+3554522 None:intergenic
ATACCAATGCCAACATGATT+TGG 0.330711 1_3:-3552835 Msa0097720:three_prime_UTR
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 1_3:+3553687 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1_3:-3555860 Msa0097720:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1_3:-3553063 Msa0097720:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1_3:-3556925 Msa0097720:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1_3:-3553798 Msa0097720:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 1_3:+3554549 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 1_3:+3553435 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1_3:-3553476 Msa0097720:CDS
ATCCATTGAGAAGGTGTAAA+TGG 0.375212 1_3:+3555821 None:intergenic
CTAATTGGATTCCAATAACT+TGG 0.378217 1_3:-3553353 Msa0097720:CDS
TTGAGATGGTTTGTTTAAGG+TGG 0.378271 1_3:-3552658 Msa0097720:three_prime_UTR
TTGATTGATGCAGTGGGATG+GGG 0.381772 1_3:-3554911 Msa0097720:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1_3:+3553629 None:intergenic
CACTCTTAGCTTTGCACACC+AGG 0.388983 1_3:-3554567 Msa0097720:CDS
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1_3:+3553715 None:intergenic
ATGTTTCATGTGATGTTTGT+TGG 0.392993 1_3:-3552774 Msa0097720:three_prime_UTR
CAACATGATTTGGATATGTT+AGG 0.394707 1_3:-3552825 Msa0097720:three_prime_UTR
TAAGGAAATGAAGTATCTTA+TGG 0.400270 1_3:+3557015 None:intergenic
TGAGATGGTTTGTTTAAGGT+GGG 0.401551 1_3:-3552657 Msa0097720:three_prime_UTR
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 1_3:+3554714 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 1_3:+3554750 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 1_3:-3553444 Msa0097720:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1_3:-3553445 Msa0097720:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 1_3:-3554737 Msa0097720:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1_3:+3553224 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 1_3:+3554734 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 1_3:-3554719 Msa0097720:CDS
TAACTGTACATACATGCATT+TGG 0.424628 1_3:+3555665 None:intergenic
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1_3:+3553716 None:intergenic
TGTTTCATGTGATGTTTGTT+GGG 0.426448 1_3:-3552773 Msa0097720:three_prime_UTR
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1_3:-3554912 Msa0097720:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1_3:-3554866 Msa0097720:CDS
TTGGAGAGATTATATAATAT+AGG 0.431999 1_3:+3557244 None:intergenic
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1_3:-3553726 Msa0097720:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1_3:-3553340 Msa0097720:CDS
ATTTGGATATGTTAGGCAAA+TGG 0.438818 1_3:-3552818 Msa0097720:three_prime_UTR
CACCTAACCCCATTTGAATA+GGG 0.440538 1_3:+3553436 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1_3:-3553797 Msa0097720:CDS
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 1_3:+3554723 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 1_3:-3553220 Msa0097720:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1_3:-3555804 Msa0097720:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 1_3:-3554732 Msa0097720:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1_3:-3553270 Msa0097720:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1_3:-3556849 Msa0097720:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1_3:+3553113 None:intergenic
AGAAGGAAACTGACTGGACT+TGG 0.454169 1_3:+3557285 None:intergenic
AGTAGTAGTAGCTGTATTTG+TGG 0.454473 1_3:+3554691 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1_3:-3553156 Msa0097720:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1_3:-3555719 Msa0097720:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1_3:-3554496 Msa0097720:intron
ATAATATAGGAAAGAGGTTG+TGG 0.464967 1_3:+3557257 None:intergenic
GATGTTTGTTGGGAGTGATT+TGG 0.465064 1_3:-3552763 Msa0097720:three_prime_UTR
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1_3:-3553741 Msa0097720:CDS
GACCATTTACACCTTCTCAA+TGG 0.468591 1_3:-3555823 Msa0097720:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1_3:+3554490 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1_3:+3553462 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1_3:+3553180 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 1_3:+3553882 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 1_3:-3556600 Msa0097720:intron
TGGTACAACAACAATGGATC+TGG 0.476248 1_3:-3556873 Msa0097720:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 1_3:+3553688 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1_3:-3554897 Msa0097720:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 1_3:+3553869 None:intergenic
CTTGTTCCTCTAAGGAGTAA+AGG 0.479994 1_3:+3553017 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1_3:-3556945 Msa0097720:exon
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1_3:+3555711 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1_3:-3553432 Msa0097720:CDS
AATAGTACAGAAGAACCCTT+TGG 0.489471 1_3:+3557055 None:intergenic
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1_3:-3553327 Msa0097720:CDS
AACAGTAAAGTGATGTTGGT+TGG 0.490751 1_3:-3552711 Msa0097720:three_prime_UTR
AATCACAATAGTCCTCCAAT+TGG 0.497889 1_3:-3553195 Msa0097720:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1_3:-3553180 Msa0097720:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1_3:-3553572 Msa0097720:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 1_3:+3553891 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 1_3:-3553438 Msa0097720:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1_3:-3553535 Msa0097720:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 1_3:-3553690 Msa0097720:CDS
TGATGAACCACTTGGAGTAA+TGG 0.508265 1_3:+3554661 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 1_3:+3553870 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1_3:+3553764 None:intergenic
ATTTACACCTTCTCAATGGA+TGG 0.510903 1_3:-3555819 Msa0097720:CDS
GATATGTTAGGCAAATGGTT+TGG 0.516188 1_3:-3552813 Msa0097720:three_prime_UTR
AACAATAAAACAACTCAAGA+AGG 0.516329 1_3:-3553090 Msa0097720:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 1_3:-3553671 Msa0097720:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1_3:-3554908 Msa0097720:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1_3:-3554873 Msa0097720:CDS
GACAACTTAACTTAAAGCTA+AGG 0.522311 1_3:+3557143 None:intergenic
TATCCAAATCATGTTGGCAT+TGG 0.526730 1_3:+3552832 None:intergenic
AGTCGTCGATAAAATGCCTA+AGG 0.528289 1_3:+3553655 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 1_3:+3554653 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1_3:-3553339 Msa0097720:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 1_3:+3556606 None:intergenic
ACTAGACAAGGTTTAAGGTA+AGG 0.535041 1_3:+3556997 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.536627 1_3:-3555813 Msa0097720:CDS
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1_3:-3555848 Msa0097720:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1_3:-3553221 Msa0097720:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 1_3:-3554835 Msa0097720:CDS
TAATATAGGAAAGAGGTTGT+GGG 0.538975 1_3:+3557258 None:intergenic
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 1_3:+3554859 None:intergenic
AATATAGGAAAGAGGTTGTG+GGG 0.539983 1_3:+3557259 None:intergenic
TCATCTATTGTTGTTCCTGG+TGG 0.540775 1_3:-3554605 Msa0097720:CDS
AAATCATGTTGGCATTGGTA+TGG 0.546597 1_3:+3552837 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1_3:-3553322 Msa0097720:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 1_3:-3553612 Msa0097720:CDS
GGGGAGAGAAGGAAACTGAC+TGG 0.557027 1_3:+3557279 None:intergenic
GAGATGGTTTGTTTAAGGTG+GGG 0.558273 1_3:-3552656 Msa0097720:three_prime_UTR
TGTTGTAACTAGACATAGGA+TGG 0.561408 1_3:+3556610 None:intergenic
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1_3:+3553576 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1_3:+3555712 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 1_3:+3554611 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 1_3:-3553051 Msa0097720:CDS
GATTATATAATATAGGAAAG+AGG 0.569572 1_3:+3557251 None:intergenic
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1_3:+3553528 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1_3:-3553225 Msa0097720:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 1_3:-3554716 Msa0097720:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 1_3:+3553873 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 1_3:+3554703 None:intergenic
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 1_3:-3554845 Msa0097720:CDS
CAACACTAGTGAGAGGATGC+AGG 0.577864 1_3:-3553919 Msa0097720:CDS
AATAAATGGTACAACAACAA+TGG 0.583357 1_3:-3556879 Msa0097720:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 1_3:-3554746 Msa0097720:CDS
AAGTGATGTTGGTTGGAGTG+TGG 0.586126 1_3:-3552704 Msa0097720:three_prime_UTR
GGATGGGGAGGATTCCATCT+GGG 0.587603 1_3:-3554896 Msa0097720:CDS
ACTTCAACCATTACTCCAAG+TGG 0.590678 1_3:-3554668 Msa0097720:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1_3:-3553264 Msa0097720:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1_3:-3553352 Msa0097720:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1_3:+3553183 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1_3:+3553734 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.604587 1_3:+3555672 None:intergenic
TTGGAAACAGTGTTGCCACC+AGG 0.605229 1_3:+3554590 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 1_3:-3554790 Msa0097720:CDS
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1_3:-3553118 Msa0097720:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1_3:-3553119 Msa0097720:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 1_3:+3553610 None:intergenic
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 1_3:+3553679 None:intergenic
GGTGAAACAAGAAACCAGAA+TGG 0.620405 1_3:+3557164 None:intergenic
CTAACATATCCAAATCATGT+TGG 0.620967 1_3:+3552826 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1_3:+3555812 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 1_3:-3553868 Msa0097720:CDS
CAACATCATAACCGCTCAGG+TGG 0.625010 1_3:-3553609 Msa0097720:CDS
ATATAGGAAAGAGGTTGTGG+GGG 0.626205 1_3:+3557260 None:intergenic
GTGTGCAAAGCTAAGAGTGT+TGG 0.626716 1_3:+3554571 None:intergenic
GTCGTCGATAAAATGCCTAA+GGG 0.628833 1_3:+3553656 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1_3:-3553132 Msa0097720:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 1_3:-3554750 Msa0097720:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1_3:+3553731 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1_3:+3553758 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1_3:+3553797 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1_3:+3553312 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 1_3:-3554856 Msa0097720:CDS
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1_3:+3555743 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1_3:-3553926 Msa0097720:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1_3:-3554862 Msa0097720:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1_3:+3554882 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1_3:+3553227 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 1_3:-3553915 Msa0097720:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1_3:-3553443 Msa0097720:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1_3:+3553518 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1_3:-3553336 Msa0097720:CDS
TGCGAAAGGCATATGAACAG+AGG 0.714010 1_3:-3554776 Msa0097720:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1_3:-3553812 Msa0097720:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1_3:-3555845 Msa0097720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG - chr1_3:3553366-3553385 Msa0097720:CDS 0.0%
!! ATTTAGAAACAAAAAAAAAA+AGG + chr1_3:3552941-3552960 None:intergenic 10.0%
!!! TTTTTTTTTTTGTTTCTAAA+TGG - chr1_3:3552940-3552959 Msa0097720:three_prime_UTR 10.0%
!!! AAATTTATATATTTTGGATT+TGG - chr1_3:3553372-3553391 Msa0097720:CDS 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG + chr1_3:3553806-3553825 None:intergenic 10.0%
!!! AGTTATTTTTAACAAAATTA+AGG + chr1_3:3555467-3555486 None:intergenic 10.0%
!!! TTTTGTTTTGGTTTTTTTTT+GGG + chr1_3:3552705-3552724 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG - chr1_3:3553404-3553423 Msa0097720:CDS 15.0%
!! TATCTTTGTTAGTATTAATT+AGG + chr1_3:3554272-3554291 None:intergenic 15.0%
!!! TATTTTTTTTCCAATCATTT+TGG - chr1_3:3554383-3554402 Msa0097720:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - chr1_3:3554575-3554594 Msa0097720:CDS 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + chr1_3:3554641-3554660 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + chr1_3:3554642-3554661 None:intergenic 15.0%
!! TTGCATTATATTAGAAAATA+AGG - chr1_3:3554642-3554661 Msa0097720:CDS 15.0%
!! ATGATATTACATTACATATA+TGG - chr1_3:3556987-3557006 Msa0097720:five_prime_UTR 15.0%
!! GATTATATAATATAGGAAAG+AGG + chr1_3:3552647-3552666 None:intergenic 20.0%
!! TTGGAGAGATTATATAATAT+AGG + chr1_3:3552654-3552673 None:intergenic 20.0%
!! CTTTGCAAAGATAAAATAAT+TGG + chr1_3:3552673-3552692 None:intergenic 20.0%
!!! GTTTTGTTTTGGTTTTTTTT+TGG + chr1_3:3552706-3552725 None:intergenic 20.0%
!! ATAAAAACAAAAACTAGACA+AGG + chr1_3:3552913-3552932 None:intergenic 20.0%
!! ATAAGGTTGTTATAGTTATA+AGG - chr1_3:3553453-3553472 Msa0097720:CDS 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG - chr1_3:3553509-3553528 Msa0097720:CDS 20.0%
!! ATTTATGAGCTATAATATGT+AGG - chr1_3:3553698-3553717 Msa0097720:CDS 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - chr1_3:3553725-3553744 Msa0097720:CDS 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + chr1_3:3553803-3553822 None:intergenic 20.0%
!!! AATCAACTTTTTTTGTGTTT+TGG - chr1_3:3553950-3553969 Msa0097720:intron 20.0%
!! CTAACAAAGATAAACATTAT+TGG - chr1_3:3554280-3554299 Msa0097720:intron 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG - chr1_3:3554564-3554583 Msa0097720:CDS 20.0%
!! AAATCAAATTTGTGTTTGAA+GGG - chr1_3:3554667-3554686 Msa0097720:CDS 20.0%
!!! TACATATTGATTAGTACTAT+AGG + chr1_3:3555509-3555528 None:intergenic 20.0%
!! TATAGTACTAATCAATATGT+AGG - chr1_3:3555508-3555527 Msa0097720:intron 20.0%
!! TTATATTCCGTTATTCATTT+AGG - chr1_3:3555742-3555761 Msa0097720:CDS 20.0%
!! TATATTCCGTTATTCATTTA+GGG - chr1_3:3555743-3555762 Msa0097720:CDS 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG - chr1_3:3555861-3555880 Msa0097720:intron 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG - chr1_3:3555862-3555881 Msa0097720:intron 20.0%
!!! TTTGTTTTTTGTTTTTGAGA+TGG - chr1_3:3557223-3557242 Msa0097720:five_prime_UTR 20.0%
!!! GAATGGTTTTTGTTTTGTTT+TGG + chr1_3:3552717-3552736 None:intergenic 25.0%
! AAACAAAACAAAAACCATTC+TGG - chr1_3:3552717-3552736 Msa0097720:three_prime_UTR 25.0%
!! TAAGGAAATGAAGTATCTTA+TGG + chr1_3:3552883-3552902 None:intergenic 25.0%
!!! TTTTGTTTCTAAATGGATCT+TGG - chr1_3:3552947-3552966 Msa0097720:three_prime_UTR 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG - chr1_3:3553002-3553021 Msa0097720:three_prime_UTR 25.0%
!!! TACCATTTATTTTTTGACTC+AGG + chr1_3:3553007-3553026 None:intergenic 25.0%
! AATAAATGGTACAACAACAA+TGG - chr1_3:3553016-3553035 Msa0097720:exon 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG + chr1_3:3553214-3553233 None:intergenic 25.0%
!!! CAGGTACAACATTTTTTTTT+AGG - chr1_3:3553314-3553333 Msa0097720:CDS 25.0%
! AATCTATATGGTATCCATTT+GGG - chr1_3:3553416-3553435 Msa0097720:CDS 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG - chr1_3:3553542-3553561 Msa0097720:CDS 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG + chr1_3:3553763-3553782 None:intergenic 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + chr1_3:3554259-3554278 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + chr1_3:3554260-3554279 None:intergenic 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + chr1_3:3554267-3554286 None:intergenic 25.0%
! AATTTAAGGACCAAAATGAT+TGG + chr1_3:3554396-3554415 None:intergenic 25.0%
! AATCTCACACATTCAATTTA+AGG + chr1_3:3554410-3554429 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + chr1_3:3554446-3554465 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + chr1_3:3554447-3554466 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - chr1_3:3554448-3554467 Msa0097720:intron 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - chr1_3:3554449-3554468 Msa0097720:intron 25.0%
! CTTCAAACACAAATTTGATT+TGG + chr1_3:3554668-3554687 None:intergenic 25.0%
! CAAATCAAATTTGTGTTTGA+AGG - chr1_3:3554666-3554685 Msa0097720:CDS 25.0%
! TGAAAAAACAAATTGATCGT+TGG - chr1_3:3554772-3554791 Msa0097720:CDS 25.0%
!!! TAGTTGATAACTAACAATCA+AGG + chr1_3:3554889-3554908 None:intergenic 25.0%
! AATAAGGTTGTTCATATTCT+TGG + chr1_3:3555360-3555379 None:intergenic 25.0%
! AAGAATATGAACAACCTTAT+TGG - chr1_3:3555359-3555378 Msa0097720:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG + chr1_3:3555688-3555707 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - chr1_3:3555927-3555946 Msa0097720:intron 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + chr1_3:3556046-3556065 None:intergenic 25.0%
! TAATTGGATTCCAATAACTT+GGG - chr1_3:3556543-3556562 Msa0097720:intron 25.0%
! AACAATAAAACAACTCAAGA+AGG - chr1_3:3556805-3556824 Msa0097720:CDS 25.0%
! AAAAAACAGTAAAGTGATGT+TGG - chr1_3:3557180-3557199 Msa0097720:five_prime_UTR 25.0%
!!! TTTTTGAGATGGTTTGTTTA+AGG - chr1_3:3557234-3557253 Msa0097720:five_prime_UTR 25.0%
TAATATAGGAAAGAGGTTGT+GGG + chr1_3:3552640-3552659 None:intergenic 30.0%
ATAATATAGGAAAGAGGTTG+TGG + chr1_3:3552641-3552660 None:intergenic 30.0%
GACAACTTAACTTAAAGCTA+AGG + chr1_3:3552755-3552774 None:intergenic 30.0%
CAAAAACTAGACAAGGTTTA+AGG + chr1_3:3552906-3552925 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG - chr1_3:3553046-3553065 Msa0097720:CDS 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - chr1_3:3553160-3553179 Msa0097720:CDS 30.0%
! ATAAGACAATGCAGCATTTT+GGG + chr1_3:3553254-3553273 None:intergenic 30.0%
TTTCTGTTGTAACTAGACAT+AGG + chr1_3:3553292-3553311 None:intergenic 30.0%
TCTAGTTACAACAGAAATAC+AGG - chr1_3:3553295-3553314 Msa0097720:CDS 30.0%
GAATCTATATGGTATCCATT+TGG - chr1_3:3553415-3553434 Msa0097720:CDS 30.0%
ATCTATATGGTATCCATTTG+GGG - chr1_3:3553417-3553436 Msa0097720:CDS 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + chr1_3:3553433-3553452 None:intergenic 30.0%
GGGGAGCTAAAAAATTTATA+AGG - chr1_3:3553436-3553455 Msa0097720:CDS 30.0%
TGTCAAGAAAAAAGGAACAT+AGG - chr1_3:3553550-3553569 Msa0097720:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - chr1_3:3553619-3553638 Msa0097720:CDS 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - chr1_3:3553620-3553639 Msa0097720:CDS 30.0%
! TTTTTGCACAGTATACTAGA+GGG - chr1_3:3553660-3553679 Msa0097720:CDS 30.0%
AGAGCACACAACAAAAAAAA+AGG + chr1_3:3553913-3553932 None:intergenic 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + chr1_3:3554002-3554021 None:intergenic 30.0%
ACAGTATTCAACAAACATCA+AGG + chr1_3:3554017-3554036 None:intergenic 30.0%
TTGTTGAATACTGTTTGAAC+AGG - chr1_3:3554023-3554042 Msa0097720:intron 30.0%
ATAGGTAAAAGCAAATGATG+AGG + chr1_3:3554155-3554174 None:intergenic 30.0%
TAACTGTACATACATGCATT+TGG + chr1_3:3554233-3554252 None:intergenic 30.0%
TGTACCAAAATTGCAAAAAG+GGG - chr1_3:3554450-3554469 Msa0097720:intron 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + chr1_3:3554499-3554518 None:intergenic 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + chr1_3:3554526-3554545 None:intergenic 30.0%
GAATCATTCAAAAGTCAATG+TGG - chr1_3:3554722-3554741 Msa0097720:CDS 30.0%
AACATTAAACATGTCATGTG+AGG - chr1_3:3554939-3554958 Msa0097720:intron 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - chr1_3:3554977-3554996 Msa0097720:intron 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - chr1_3:3554978-3554997 Msa0097720:intron 30.0%
AAGCATTATCTTGTCCAATA+AGG + chr1_3:3555376-3555395 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + chr1_3:3555636-3555655 None:intergenic 30.0%
TGTAGTCCCTAAATGAATAA+CGG + chr1_3:3555752-3555771 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+TGG - chr1_3:3555787-3555806 Msa0097720:CDS 30.0%
CTAATCTAATCACATTCCAT+TGG + chr1_3:3555806-3555825 None:intergenic 30.0%
TGTGTATAAGGGATAAATTC+AGG - chr1_3:3555873-3555892 Msa0097720:intron 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + chr1_3:3556413-3556432 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - chr1_3:3556450-3556469 Msa0097720:intron 30.0%
GAAATAGACCCTATTCAAAT+GGG - chr1_3:3556451-3556470 Msa0097720:intron 30.0%
AAATAGACCCTATTCAAATG+GGG - chr1_3:3556452-3556471 Msa0097720:intron 30.0%
ATACTACAAAGCAAGCTAAT+TGG - chr1_3:3556527-3556546 Msa0097720:intron 30.0%
CTAATTGGATTCCAATAACT+TGG - chr1_3:3556542-3556561 Msa0097720:intron 30.0%
AATGCAAATGATGATCACTA+TGG - chr1_3:3556625-3556644 Msa0097720:CDS 30.0%
CTAACATATCCAAATCATGT+TGG + chr1_3:3557072-3557091 None:intergenic 30.0%
! CAACATGATTTGGATATGTT+AGG - chr1_3:3557070-3557089 Msa0097720:five_prime_UTR 30.0%
ATTTGGATATGTTAGGCAAA+TGG - chr1_3:3557077-3557096 Msa0097720:five_prime_UTR 30.0%
ATGTTTCATGTGATGTTTGT+TGG - chr1_3:3557121-3557140 Msa0097720:five_prime_UTR 30.0%
TGTTTCATGTGATGTTTGTT+GGG - chr1_3:3557122-3557141 Msa0097720:five_prime_UTR 30.0%
AATATAGGAAAGAGGTTGTG+GGG + chr1_3:3552639-3552658 None:intergenic 35.0%
AATAGTACAGAAGAACCCTT+TGG + chr1_3:3552843-3552862 None:intergenic 35.0%
! ACTAGACAAGGTTTAAGGTA+AGG + chr1_3:3552901-3552920 None:intergenic 35.0%
! TGTTTCTAAATGGATCTTGG+TGG - chr1_3:3552950-3552969 Msa0097720:three_prime_UTR 35.0%
! CATAAGACAATGCAGCATTT+TGG + chr1_3:3553255-3553274 None:intergenic 35.0%
TGTTGTAACTAGACATAGGA+TGG + chr1_3:3553288-3553307 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - chr1_3:3553475-3553494 Msa0097720:CDS 35.0%
! GTTTTTGCACAGTATACTAG+AGG - chr1_3:3553659-3553678 Msa0097720:CDS 35.0%
ATGTAAGGAGGATGTAGAAA+AGG + chr1_3:3553791-3553810 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - chr1_3:3554035-3554054 Msa0097720:intron 35.0%
! ATCCATTGAGAAGGTGTAAA+TGG + chr1_3:3554077-3554096 None:intergenic 35.0%
ATTTACACCTTCTCAATGGA+TGG - chr1_3:3554076-3554095 Msa0097720:intron 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + chr1_3:3554457-3554476 None:intergenic 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - chr1_3:3554457-3554476 Msa0097720:intron 35.0%
CTTGACAAGAGATACATTCA+AGG - chr1_3:3554545-3554564 Msa0097720:CDS 35.0%
ATATGTGAATTGTTACGCTG+TGG + chr1_3:3554702-3554721 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - chr1_3:3554911-3554930 Msa0097720:intron 35.0%
ATTAAACATGTCATGTGAGG+TGG - chr1_3:3554942-3554961 Msa0097720:intron 35.0%
! GCAGTACTTTTGATCAACAA+CGG + chr1_3:3555102-3555121 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG - chr1_3:3555105-3555124 Msa0097720:intron 35.0%
AGTAGTAGTAGCTGTATTTG+TGG + chr1_3:3555207-3555226 None:intergenic 35.0%
GGAACAACAATAGATGAAGA+AGG + chr1_3:3555287-3555306 None:intergenic 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - chr1_3:3555287-3555306 Msa0097720:intron 35.0%
TCATATTCTTGGAATGTTCC+TGG + chr1_3:3555349-3555368 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - chr1_3:3555580-3555599 Msa0097720:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - chr1_3:3555581-3555600 Msa0097720:intron 35.0%
AGAATAACAACACTAGTGAG+AGG - chr1_3:3555969-3555988 Msa0097720:intron 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG + chr1_3:3556028-3556047 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + chr1_3:3556407-3556426 None:intergenic 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + chr1_3:3556436-3556455 None:intergenic 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + chr1_3:3556556-3556575 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - chr1_3:3556555-3556574 Msa0097720:intron 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - chr1_3:3556556-3556575 Msa0097720:intron 35.0%
GTGATCATCATTTGCATTGT+AGG + chr1_3:3556623-3556642 None:intergenic 35.0%
ACCATCAGTCATGAGATTTA+GGG + chr1_3:3556674-3556693 None:intergenic 35.0%
AACCATCAGTCATGAGATTT+AGG + chr1_3:3556675-3556694 None:intergenic 35.0%
TAAATCTCATGACTGATGGT+TGG - chr1_3:3556674-3556693 Msa0097720:CDS 35.0%
AAATCTCATGACTGATGGTT+GGG - chr1_3:3556675-3556694 Msa0097720:CDS 35.0%
AATCACAATAGTCCTCCAAT+TGG - chr1_3:3556700-3556719 Msa0097720:CDS 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + chr1_3:3556796-3556815 None:intergenic 35.0%
AGTTTGTGCAATGATCTTCT+AGG - chr1_3:3556832-3556851 Msa0097720:CDS 35.0%
ATACTTCCTTTACTCCTTAG+AGG - chr1_3:3556872-3556891 Msa0097720:CDS 35.0%
TTCTTCATCTTGTTCCTCTA+AGG + chr1_3:3556889-3556908 None:intergenic 35.0%
!! AAATCATGTTGGCATTGGTA+TGG + chr1_3:3557061-3557080 None:intergenic 35.0%
ATACCAATGCCAACATGATT+TGG - chr1_3:3557060-3557079 Msa0097720:five_prime_UTR 35.0%
TATCCAAATCATGTTGGCAT+TGG + chr1_3:3557066-3557085 None:intergenic 35.0%
GATATGTTAGGCAAATGGTT+TGG - chr1_3:3557082-3557101 Msa0097720:five_prime_UTR 35.0%
AACAGTAAAGTGATGTTGGT+TGG - chr1_3:3557184-3557203 Msa0097720:five_prime_UTR 35.0%
!! TTGAGATGGTTTGTTTAAGG+TGG - chr1_3:3557237-3557256 Msa0097720:five_prime_UTR 35.0%
!! TGAGATGGTTTGTTTAAGGT+GGG - chr1_3:3557238-3557257 Msa0097720:five_prime_UTR 35.0%
ATATAGGAAAGAGGTTGTGG+GGG + chr1_3:3552638-3552657 None:intergenic 40.0%
GGTGAAACAAGAAACCAGAA+TGG + chr1_3:3552734-3552753 None:intergenic 40.0%
! AGAACCCTTTGGAAAAAGGA+AGG + chr1_3:3552832-3552851 None:intergenic 40.0%
! CAGAAGAACCCTTTGGAAAA+AGG + chr1_3:3552836-3552855 None:intergenic 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - chr1_3:3552970-3552989 Msa0097720:three_prime_UTR 40.0%
TGGTACAACAACAATGGATC+TGG - chr1_3:3553022-3553041 Msa0097720:exon 40.0%
TGATTCTACAGTACTGTTGG+AGG - chr1_3:3553478-3553497 Msa0097720:CDS 40.0%
GATTCTACAGTACTGTTGGA+GGG - chr1_3:3553479-3553498 Msa0097720:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - chr1_3:3553626-3553645 Msa0097720:CDS 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - chr1_3:3553627-3553646 Msa0097720:CDS 40.0%
AAAACCCATCTCCCTAAAAC+AGG + chr1_3:3553634-3553653 None:intergenic 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - chr1_3:3554047-3554066 Msa0097720:intron 40.0%
GACCATTTACACCTTCTCAA+TGG - chr1_3:3554072-3554091 Msa0097720:intron 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + chr1_3:3554173-3554192 None:intergenic 40.0%
AGATAAGCCAGCAGAATCAA+GGG + chr1_3:3554186-3554205 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG + chr1_3:3554187-3554206 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + chr1_3:3554226-3554245 None:intergenic 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1_3:3554793-3554812 Msa0097720:CDS 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1_3:3554796-3554815 Msa0097720:CDS 40.0%
TGTGAGGTGGAGTAGTAATA+TGG - chr1_3:3554809-3554828 Msa0097720:CDS 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - chr1_3:3554982-3555001 Msa0097720:intron 40.0%
TTTGATTGATGCAGTGGGAT+GGG - chr1_3:3554983-3555002 Msa0097720:intron 40.0%
GGAGAACAGATGGAAAGAAA+TGG - chr1_3:3555060-3555079 Msa0097720:intron 40.0%
ACTTCAACCATTACTCCAAG+TGG - chr1_3:3555227-3555246 Msa0097720:intron 40.0%
TGATGAACCACTTGGAGTAA+TGG + chr1_3:3555237-3555256 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + chr1_3:3555245-3555264 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG - chr1_3:3555290-3555309 Msa0097720:intron 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + chr1_3:3555414-3555433 None:intergenic 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG + chr1_3:3556029-3556048 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG - chr1_3:3556027-3556046 Msa0097720:intron 40.0%
TTTCATATGATGAGTCCTCG+AGG - chr1_3:3556083-3556102 Msa0097720:intron 40.0%
TCCTCGAGGAACAATGAATT+CGG - chr1_3:3556097-3556116 Msa0097720:intron 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + chr1_3:3556140-3556159 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + chr1_3:3556141-3556160 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + chr1_3:3556150-3556169 None:intergenic 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + chr1_3:3556151-3556170 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + chr1_3:3556188-3556207 None:intergenic 40.0%
GTCGTCGATAAAATGCCTAA+GGG + chr1_3:3556242-3556261 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG + chr1_3:3556243-3556262 None:intergenic 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + chr1_3:3556268-3556287 None:intergenic 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + chr1_3:3556269-3556288 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - chr1_3:3556419-3556438 Msa0097720:intron 40.0%
CACCTAACCCCATTTGAATA+GGG + chr1_3:3556462-3556481 None:intergenic 40.0%
ACACCTAACCCCATTTGAAT+AGG + chr1_3:3556463-3556482 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - chr1_3:3556463-3556482 Msa0097720:intron 40.0%
AATGATGATCACTATGGCAG+AGG - chr1_3:3556631-3556650 Msa0097720:CDS 40.0%
ATCAGTCATGAGATTTAGGG+CGG + chr1_3:3556671-3556690 None:intergenic 40.0%
GTCCTTCAAAAGACTGCATT+CGG - chr1_3:3556739-3556758 Msa0097720:CDS 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + chr1_3:3556744-3556763 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - chr1_3:3556844-3556863 Msa0097720:CDS 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG + chr1_3:3556881-3556900 None:intergenic 40.0%
! GATGTTTGTTGGGAGTGATT+TGG - chr1_3:3557132-3557151 Msa0097720:five_prime_UTR 40.0%
!! GAGATGGTTTGTTTAAGGTG+GGG - chr1_3:3557239-3557258 Msa0097720:five_prime_UTR 40.0%
AGAAGGAAACTGACTGGACT+TGG + chr1_3:3552613-3552632 None:intergenic 45.0%
! ACGTGCCTTCCTTTTTCCAA+AGG - chr1_3:3552824-3552843 Msa0097720:three_prime_UTR 45.0%
! CGTGCCTTCCTTTTTCCAAA+GGG - chr1_3:3552825-3552844 Msa0097720:three_prime_UTR 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - chr1_3:3552965-3552984 Msa0097720:three_prime_UTR 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG - chr1_3:3553490-3553509 Msa0097720:CDS 45.0%
ACCTTCTCAATGGATGGAGT+TGG - chr1_3:3554082-3554101 Msa0097720:intron 45.0%
TCCAACTCCATCCATTGAGA+AGG + chr1_3:3554086-3554105 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - chr1_3:3554091-3554110 Msa0097720:intron 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - chr1_3:3554176-3554195 Msa0097720:intron 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - chr1_3:3554460-3554479 Msa0097720:intron 45.0%
AAACATGTCATGTGAGGTGG+TGG - chr1_3:3554799-3554818 Msa0097720:CDS 45.0%
TTGATTGATGCAGTGGGATG+GGG - chr1_3:3554984-3555003 Msa0097720:intron 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + chr1_3:3555016-3555035 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - chr1_3:3555022-3555041 Msa0097720:intron 45.0%
! TGCGAAAGGCATATGAACAG+AGG - chr1_3:3555119-3555138 Msa0097720:intron 45.0%
TGTATTTGTGGTTCCACCAG+TGG + chr1_3:3555195-3555214 None:intergenic 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG + chr1_3:3555327-3555346 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + chr1_3:3555408-3555427 None:intergenic 45.0%
TGTCTCTATGACTGCTGTTG+AGG - chr1_3:3555653-3555672 Msa0097720:intron 45.0%
CCTCGAGGAACAATGAATTC+GGG - chr1_3:3556098-3556117 Msa0097720:intron 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + chr1_3:3556134-3556153 None:intergenic 45.0%
ACAGAAAACCTCCACTTTGC+TGG - chr1_3:3556153-3556172 Msa0097720:intron 45.0%
CAGAAAACCTCCACTTTGCT+GGG - chr1_3:3556154-3556173 Msa0097720:intron 45.0%
TGAAGATGAACCGAAGGTTC+GGG + chr1_3:3556182-3556201 None:intergenic 45.0%
GTGAAGATGAACCGAAGGTT+CGG + chr1_3:3556183-3556202 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG - chr1_3:3556360-3556379 Msa0097720:intron 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + chr1_3:3556370-3556389 None:intergenic 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + chr1_3:3556404-3556423 None:intergenic 45.0%
GACCCTATTCAAATGGGGTT+AGG - chr1_3:3556457-3556476 Msa0097720:intron 45.0%
AGATGAAGAACCTCTCCAAG+TGG + chr1_3:3556586-3556605 None:intergenic 45.0%
GCCCTAAATCTCATGACTGA+TGG - chr1_3:3556670-3556689 Msa0097720:CDS 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + chr1_3:3556737-3556756 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG - chr1_3:3556763-3556782 Msa0097720:CDS 45.0%
! AAGTGATGTTGGTTGGAGTG+TGG - chr1_3:3557191-3557210 Msa0097720:five_prime_UTR 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:3552796-3552815 None:intergenic 50.0%
!! AGTTCTGGAAGCATGCATGG+AGG - chr1_3:3554050-3554069 Msa0097720:intron 50.0%
GATAGCGTGTCACACGTTCA+AGG - chr1_3:3554606-3554625 Msa0097720:CDS 50.0%
TCTGTTCTCCTACACCTTCC+TGG + chr1_3:3555050-3555069 None:intergenic 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG - chr1_3:3555050-3555069 Msa0097720:intron 50.0%
CCACAGGCTTTCTTGAACGA+TGG + chr1_3:3555148-3555167 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG - chr1_3:3555145-3555164 Msa0097720:intron 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG - chr1_3:3555149-3555168 Msa0097720:intron 50.0%
TTGGAAACAGTGTTGCCACC+AGG + chr1_3:3555308-3555327 None:intergenic 50.0%
!! CACTCTTAGCTTTGCACACC+AGG - chr1_3:3555328-3555347 Msa0097720:intron 50.0%
CAACACTAGTGAGAGGATGC+AGG - chr1_3:3555976-3555995 Msa0097720:intron 50.0%
ACTAGTGAGAGGATGCAGGA+TGG - chr1_3:3555980-3555999 Msa0097720:intron 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG + chr1_3:3556025-3556044 None:intergenic 50.0%
CCCGAATTCATTGTTCCTCG+AGG + chr1_3:3556101-3556120 None:intergenic 50.0%
AACCCTACAAACCGAGATGC+AGG - chr1_3:3556205-3556224 Msa0097720:intron 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG + chr1_3:3556210-3556229 None:intergenic 50.0%
ATTGCTGAGAGCCTGCATCT+CGG + chr1_3:3556219-3556238 None:intergenic 50.0%
CACCAACATCATAACCGCTC+AGG - chr1_3:3556283-3556302 Msa0097720:intron 50.0%
CACCTGAGCGGTTATGATGT+TGG + chr1_3:3556288-3556307 None:intergenic 50.0%
CAACATCATAACCGCTCAGG+TGG - chr1_3:3556286-3556305 Msa0097720:intron 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG - chr1_3:3556296-3556315 Msa0097720:intron 50.0%
GCCAAGAAAAACCACCTGAG+CGG + chr1_3:3556300-3556319 None:intergenic 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG - chr1_3:3556300-3556319 Msa0097720:intron 50.0%
AGCTCGACATGCAGTCTGAT+AGG - chr1_3:3556323-3556342 Msa0097720:intron 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - chr1_3:3556559-3556578 Msa0097720:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - chr1_3:3556568-3556587 Msa0097720:intron 50.0%
GTTGGCGATGATCCAATTGG+AGG + chr1_3:3556715-3556734 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - chr1_3:3556715-3556734 Msa0097720:CDS 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + chr1_3:3556733-3556752 None:intergenic 50.0%
TTCTGCCCTTGGACTACTAC+CGG + chr1_3:3556785-3556804 None:intergenic 50.0%
GGGGAGAGAAGGAAACTGAC+TGG + chr1_3:3552619-3552638 None:intergenic 55.0%
AAGAGGTTGTGGGGGAGAGA+AGG + chr1_3:3552630-3552649 None:intergenic 55.0%
ATTGATGCAGTGGGATGGGG+AGG - chr1_3:3554987-3555006 Msa0097720:intron 55.0%
GGATGGGGAGGATTCCATCT+GGG - chr1_3:3554999-3555018 Msa0097720:intron 55.0%
AACAACACCGATCCGGAACC+AGG - chr1_3:3555029-3555048 Msa0097720:intron 55.0%
ACACCTTCCTGGTTCCGGAT+CGG + chr1_3:3555039-3555058 None:intergenic 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG - chr1_3:3555039-3555058 Msa0097720:intron 55.0%
CTCCTACACCTTCCTGGTTC+CGG + chr1_3:3555044-3555063 None:intergenic 55.0%
AAGCCTGTGGAAGGCCAATC+TGG - chr1_3:3555158-3555177 Msa0097720:intron 55.0%
CTGCTGCCAACACCATCAAC+AGG - chr1_3:3555399-3555418 Msa0097720:intron 55.0%
ACGGCTCAGATCATAGTCGC+AGG + chr1_3:3555617-3555636 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - chr1_3:3555616-3555635 Msa0097720:intron 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG + chr1_3:3556016-3556035 None:intergenic 55.0%
TTGCTGGGAACCCGAACCTT+CGG - chr1_3:3556169-3556188 Msa0097720:intron 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG + chr1_3:3556211-3556230 None:intergenic 55.0%
CAGGCTCTCAGCAATCCCTT+AGG - chr1_3:3556224-3556243 Msa0097720:intron 55.0%
TCAGACTGCATGTCGAGCTC+CGG + chr1_3:3556322-3556341 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + chr1_3:3556380-3556399 None:intergenic 55.0%
AATGGGTGGTCCACTTGGAG+AGG - chr1_3:3556573-3556592 Msa0097720:intron 55.0%
CCGGTTGGCGATGATCCAAT+TGG + chr1_3:3556718-3556737 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - chr1_3:3556777-3556796 Msa0097720:CDS 55.0%
GGGATGGGGAGGATTCCATC+TGG - chr1_3:3554998-3555017 Msa0097720:intron 60.0%
ACACCGATCCGGAACCAGGA+AGG - chr1_3:3555033-3555052 Msa0097720:intron 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG + chr1_3:3555164-3555183 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG - chr1_3:3555163-3555182 Msa0097720:intron 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG + chr1_3:3555175-3555194 None:intergenic 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + chr1_3:3555184-3555203 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + chr1_3:3556007-3556026 None:intergenic 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + chr1_3:3556164-3556183 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + chr1_3:3556167-3556186 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - chr1_3:3556776-3556795 Msa0097720:CDS 60.0%
TCTGGCCAGGCTCTCACCAC+TGG - chr1_3:3555176-3555195 Msa0097720:intron 65.0%
GGCCAGGCTCTCACCACTGG+TGG - chr1_3:3555179-3555198 Msa0097720:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3552604 3557313 3552604 ID=Msa0097720;Name=Msa0097720
chr1_3 mRNA 3552604 3557313 3552604 ID=Msa0097720-mRNA-1;Parent=Msa0097720;Name=Msa0097720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=355|1|1|1|1|1|4|422|639
chr1_3 exon 3552604 3553968 3552604 ID=Msa0097720-mRNA-1:exon:1085;Parent=Msa0097720-mRNA-1
chr1_3 exon 3554497 3554920 3554497 ID=Msa0097720-mRNA-1:exon:1084;Parent=Msa0097720-mRNA-1
chr1_3 exon 3555678 3555872 3555678 ID=Msa0097720-mRNA-1:exon:1083;Parent=Msa0097720-mRNA-1
chr1_3 exon 3556601 3557313 3556601 ID=Msa0097720-mRNA-1:exon:1082;Parent=Msa0097720-mRNA-1
chr1_3 five_prime_UTR 3556959 3557313 3556959 ID=Msa0097720-mRNA-1:five_prime_utr;Parent=Msa0097720-mRNA-1
chr1_3 CDS 3556601 3556958 3556601 ID=Msa0097720-mRNA-1:cds;Parent=Msa0097720-mRNA-1
chr1_3 CDS 3555678 3555872 3555678 ID=Msa0097720-mRNA-1:cds;Parent=Msa0097720-mRNA-1
chr1_3 CDS 3554497 3554920 3554497 ID=Msa0097720-mRNA-1:cds;Parent=Msa0097720-mRNA-1
chr1_3 CDS 3553026 3553968 3553026 ID=Msa0097720-mRNA-1:cds;Parent=Msa0097720-mRNA-1
chr1_3 three_prime_UTR 3552604 3553025 3552604 ID=Msa0097720-mRNA-1:three_prime_utr;Parent=Msa0097720-mRNA-1
Gene Sequence

>Msa0097720

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTTACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGTTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCAACAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAG
Protein sequence

>Msa0097720

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTTTSTITPSGSSKQINSAAASPSSSIVVPGGNTVSNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESTNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNTSFTP*