AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141750 MtrunA17_Chr1g0152191 95.559 653 15 4 1 639 1 653 0.0 1259
Msa0141750 MtrunA17_Chr4g0070591 54.478 134 50 3 130 262 9 132 5.89e-41 153
Msa0141750 MtrunA17_Chr2g0300511 58.407 113 47 0 130 242 7 119 9.41e-41 152
Msa0141750 MtrunA17_Chr8g0343881 55.357 112 46 1 131 242 12 119 8.25e-40 149
Msa0141750 MtrunA17_Chr4g0021261 51.825 137 49 3 130 266 25 144 6.97e-37 140
Msa0141750 MtrunA17_Chr5g0409471 58.407 113 31 2 130 242 16 112 1.77e-36 139
Msa0141750 MtrunA17_Chr7g0265931 55.556 117 44 3 128 242 76 186 1.10e-32 130
Msa0141750 MtrunA17_Chr3g0127641 54.783 115 26 3 130 242 112 202 3.42e-32 131
Msa0141750 MtrunA17_Chr8g0351521 44.248 113 43 4 131 242 55 148 2.26e-20 94.4
Msa0141750 MtrunA17_Chr8g0351521 35.878 131 77 4 145 271 248 375 1.41e-11 67.0
Msa0141750 MtrunA17_Chr8g0351291 50.000 58 25 1 183 236 32 89 1.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141750 AT2G22840.1 39.138 603 199 21 27 597 22 488 7.53e-92 294
Msa0141750 AT4G37740.1 38.633 629 209 27 32 614 28 525 3.94e-85 277
Msa0141750 AT3G13960.1 58.407 113 43 1 130 242 16 124 3.05e-41 155
Msa0141750 AT2G36400.1 57.391 115 48 1 128 242 74 187 5.63e-34 134
Msa0141750 AT2G06200.2 45.342 161 75 4 130 278 45 204 1.78e-32 127
Msa0141750 AT2G06200.1 45.342 161 75 4 130 278 6 165 1.98e-32 125
Msa0141750 AT3G52910.1 51.240 121 47 2 128 242 80 194 2.75e-31 126
Msa0141750 AT4G24150.3 48.696 115 59 0 128 242 109 223 4.90e-26 111
Msa0141750 AT4G24150.2 48.696 115 59 0 128 242 147 261 1.12e-25 111
Msa0141750 AT5G53660.1 43.939 132 53 2 124 255 53 163 7.10e-24 104
Msa0141750 AT4G24150.1 45.714 140 51 5 128 242 147 286 1.82e-23 104
Msa0141750 AT2G45480.2 49.074 108 47 3 134 239 28 129 2.10e-22 98.6
Msa0141750 AT2G45480.3 49.074 108 47 3 134 239 28 129 1.35e-21 98.6
Msa0141750 AT2G45480.3 46.479 71 36 2 198 268 306 374 4.40e-13 72.0
Msa0141750 AT2G45480.1 49.074 108 47 3 134 239 26 127 1.45e-21 98.2
Msa0141750 AT2G45480.1 46.479 71 36 2 198 268 304 372 4.68e-13 72.0
Msa0141750 AT2G06200.3 46.237 93 44 2 192 278 1 93 1.76e-16 78.2

Find 169 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1_4:+484745 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1_4:-485940 Msa0141750:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 1_4:+488024 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 1_4:+485942 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1_4:+484626 None:intergenic
CTCTCAAATATTAATATTTA+CGG 0.237286 1_4:+484000 None:intergenic
TTCTTCATCTTGTTCCTCTA+AGG 0.256559 1_4:+484412 None:intergenic
TCTGTTCTCCTGCACCTTCC+TGG 0.258996 1_4:+486252 None:intergenic
ATGATATTACATTACATATA+TGG 0.264920 1_4:-484308 Msa0141750:three_prime_UTR
GTGATCATCATTTGCATTGT+AGG 0.266573 1_4:+484678 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1_4:-488311 Msa0141750:CDS
CTCCTGCACCTTCCTGGTTC+CGG 0.284328 1_4:+486258 None:intergenic
ATACTTCCTTTACTCCTTAG+AGG 0.290780 1_4:-484426 Msa0141750:exon
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1_4:-484771 Msa0141750:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.302538 1_4:-486012 Msa0141750:CDS
CAGAAGAACCCTTTGGAAAA+AGG 0.303893 1_4:+488443 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1_4:-485145 Msa0141750:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1_4:+485926 None:intergenic
ATACCAATGCCAACATGATT+TGG 0.330711 1_4:-484235 Msa0141750:three_prime_UTR
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 1_4:+485090 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1_4:-487244 Msa0141750:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1_4:-484466 Msa0141750:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1_4:-488306 Msa0141750:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1_4:-485201 Msa0141750:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 1_4:+485953 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 1_4:+484838 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1_4:-484879 Msa0141750:CDS
CTAATTGGATTCCAATAACT+TGG 0.378217 1_4:-484756 Msa0141750:CDS
TTGAGATGGTTTGTTTAAGG+TGG 0.378271 1_4:-484058 Msa0141750:three_prime_UTR
TTGATTGATGCAGTGGGATG+GGG 0.381772 1_4:-486315 Msa0141750:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1_4:+485032 None:intergenic
CACTCTTAGCTTTGCACACC+AGG 0.388983 1_4:-485971 Msa0141750:CDS
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1_4:+485118 None:intergenic
ATGTTTCATGTGATGTTTGT+TGG 0.392993 1_4:-484174 Msa0141750:three_prime_UTR
CAACATGATTTGGATATGTT+AGG 0.394707 1_4:-484225 Msa0141750:three_prime_UTR
TAAGGAAATGAAGTATCTTA+TGG 0.400270 1_4:+488396 None:intergenic
TGAGATGGTTTGTTTAAGGT+GGG 0.401551 1_4:-484057 Msa0141750:three_prime_UTR
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 1_4:+486118 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 1_4:+486154 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 1_4:-484847 Msa0141750:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1_4:-484848 Msa0141750:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 1_4:-486141 Msa0141750:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1_4:+484627 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 1_4:+486138 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 1_4:-486123 Msa0141750:CDS
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1_4:+485119 None:intergenic
TGTTTCATGTGATGTTTGTT+GGG 0.426448 1_4:-484173 Msa0141750:three_prime_UTR
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1_4:-486316 Msa0141750:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1_4:-486270 Msa0141750:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1_4:-485129 Msa0141750:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1_4:-484743 Msa0141750:CDS
ATTTGGATATGTTAGGCAAA+TGG 0.438818 1_4:-484218 Msa0141750:three_prime_UTR
TAACTGCACATACATGCATT+TGG 0.440306 1_4:+487049 None:intergenic
CACCTAACCCCATTTGAATA+GGG 0.440538 1_4:+484839 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1_4:-485200 Msa0141750:CDS
AGTAGTAGCAGCTGTATTTG+TGG 0.442455 1_4:+486095 None:intergenic
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 1_4:+486127 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 1_4:-484623 Msa0141750:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1_4:-487188 Msa0141750:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 1_4:-486136 Msa0141750:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1_4:-484673 Msa0141750:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1_4:-488230 Msa0141750:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1_4:+484516 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1_4:-484559 Msa0141750:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1_4:-487103 Msa0141750:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1_4:-485900 Msa0141750:intron
GATGTTTGTTGGGAGTGATT+TGG 0.465064 1_4:-484163 Msa0141750:three_prime_UTR
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1_4:-485144 Msa0141750:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1_4:+485894 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1_4:+484865 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1_4:+484583 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 1_4:+485285 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 1_4:-487981 Msa0141750:intron
TGGTACAACAACAATGGATC+TGG 0.476248 1_4:-488254 Msa0141750:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 1_4:+485091 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1_4:-486301 Msa0141750:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 1_4:+485272 None:intergenic
CTTGTTCCTCTAAGGAGTAA+AGG 0.479994 1_4:+484420 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1_4:-488326 Msa0141750:exon
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1_4:+487095 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1_4:-484835 Msa0141750:CDS
AATAGTACAGAAGAACCCTT+TGG 0.489471 1_4:+488436 None:intergenic
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1_4:-484730 Msa0141750:CDS
AACAGTAAAGTGATGTTGGT+TGG 0.490751 1_4:-484111 Msa0141750:three_prime_UTR
AATCACAATAGTCCTCCAAT+TGG 0.497889 1_4:-484598 Msa0141750:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1_4:-484583 Msa0141750:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1_4:-484975 Msa0141750:CDS
GACCATTCACACCTTCTCAA+TGG 0.498886 1_4:-487207 Msa0141750:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 1_4:+485294 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 1_4:-484841 Msa0141750:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1_4:-484938 Msa0141750:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 1_4:-485093 Msa0141750:CDS
GCACCTTCCTGGTTCCGGAT+CGG 0.506618 1_4:+486263 None:intergenic
TGATGAACCACTTGGAGTAA+TGG 0.508265 1_4:+486065 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 1_4:+485273 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1_4:+485167 None:intergenic
ATCCGGAACCAGGAAGGTGC+AGG 0.510488 1_4:-486260 Msa0141750:CDS
GATATGTTAGGCAAATGGTT+TGG 0.516188 1_4:-484213 Msa0141750:three_prime_UTR
AACAATAAAACAACTCAAGA+AGG 0.516329 1_4:-484493 Msa0141750:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 1_4:-485074 Msa0141750:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1_4:-486312 Msa0141750:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1_4:-486277 Msa0141750:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.523978 1_4:-486239 Msa0141750:CDS
TATCCAAATCATGTTGGCAT+TGG 0.526730 1_4:+484232 None:intergenic
AGTCGTCGATAAAATGCCTA+AGG 0.528289 1_4:+485058 None:intergenic
ATCCATTGAGAAGGTGTGAA+TGG 0.529637 1_4:+487205 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 1_4:+486057 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1_4:-484742 Msa0141750:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 1_4:+487987 None:intergenic
ACTAGACAAGGTTTAAGGTA+AGG 0.535041 1_4:+488378 None:intergenic
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1_4:-487232 Msa0141750:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1_4:-484624 Msa0141750:CDS
AAATCATGTTGGCATTGGTA+TGG 0.546597 1_4:+484237 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1_4:-484725 Msa0141750:CDS
ATTCACACCTTCTCAATGGA+TGG 0.550208 1_4:-487203 Msa0141750:CDS
GAGATGGTTTGTTTAAGGTG+GGG 0.558273 1_4:-484056 Msa0141750:three_prime_UTR
TGTTGTAACTAGACATAGGA+TGG 0.561408 1_4:+487991 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.562452 1_4:-487197 Msa0141750:CDS
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1_4:+484979 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1_4:+487096 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 1_4:+486015 None:intergenic
CAACATCATAACCGCTCAAG+TGG 0.566906 1_4:-485012 Msa0141750:CDS
GATCTTCTAGGATCAACTCT+TGG 0.567836 1_4:-484454 Msa0141750:CDS
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1_4:+484931 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1_4:-484628 Msa0141750:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 1_4:-486120 Msa0141750:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 1_4:+485276 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 1_4:+486107 None:intergenic
GGAAGGTGCAGGAGAACAGA+TGG 0.571869 1_4:-486249 Msa0141750:CDS
TTGGAAACAGTGTTGCTACC+AGG 0.574349 1_4:+485994 None:intergenic
CAACACTAGTGAGAGGATGC+AGG 0.577864 1_4:-485322 Msa0141750:CDS
CACTTGAGCGGTTATGATGT+TGG 0.578065 1_4:+485013 None:intergenic
AATAAATGGTACAACAACAA+TGG 0.583357 1_4:-488260 Msa0141750:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 1_4:-486150 Msa0141750:CDS
AAGTGATGTTGGTTGGAGTG+TGG 0.586126 1_4:-484104 Msa0141750:three_prime_UTR
GGATGGGGAGGATTCCATCT+GGG 0.587603 1_4:-486300 Msa0141750:CDS
ACTTCAACCATTACTCCAAG+TGG 0.590678 1_4:-486072 Msa0141750:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1_4:-484667 Msa0141750:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1_4:-484755 Msa0141750:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1_4:+484586 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1_4:+485137 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.603882 1_4:+487056 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 1_4:-486194 Msa0141750:CDS
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1_4:-484521 Msa0141750:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1_4:-484522 Msa0141750:CDS
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 1_4:+485082 None:intergenic
CTAACATATCCAAATCATGT+TGG 0.620967 1_4:+484226 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1_4:+487196 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 1_4:-485271 Msa0141750:CDS
GTGTGCAAAGCTAAGAGTGT+TGG 0.626716 1_4:+485975 None:intergenic
GTCGTCGATAAAATGCCTAA+GGG 0.628833 1_4:+485059 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1_4:-484535 Msa0141750:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 1_4:-486154 Msa0141750:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1_4:+485134 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1_4:+485161 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1_4:+485200 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1_4:+484715 None:intergenic
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1_4:+487127 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1_4:-485329 Msa0141750:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1_4:-486266 Msa0141750:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1_4:+486286 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1_4:+484630 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 1_4:-485318 Msa0141750:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1_4:-484846 Msa0141750:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1_4:+484921 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1_4:-484739 Msa0141750:CDS
TGCGAAAGGCATATGAACAG+AGG 0.714010 1_4:-486180 Msa0141750:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1_4:-485215 Msa0141750:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1_4:-487229 Msa0141750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATTTATATATTT+TGG - chr1_4:484574-484593 Msa0141750:CDS 0.0%
!! ATTTAGAAACAAAAAAAAAA+AGG + chr1_4:484149-484168 None:intergenic 10.0%
!!! TTTTTTTTTTTGTTTCTAAA+TGG - chr1_4:484148-484167 Msa0141750:three_prime_UTR 10.0%
!!! AAATTTATATATTTTGGATT+TGG - chr1_4:484580-484599 Msa0141750:CDS 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG + chr1_4:485014-485033 None:intergenic 10.0%
!! TATGTATTTATGAATCTATA+TGG - chr1_4:484612-484631 Msa0141750:CDS 15.0%
!! TATCTTTGTTAGTATTAATT+AGG + chr1_4:485477-485496 None:intergenic 15.0%
!!! TATTTTTTTTCCAATCATTT+TGG - chr1_4:485588-485607 Msa0141750:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - chr1_4:485778-485797 Msa0141750:intron 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + chr1_4:485844-485863 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + chr1_4:485845-485864 None:intergenic 15.0%
!! TTGCATTATATTAGAAAATA+AGG - chr1_4:485845-485864 Msa0141750:intron 15.0%
!!! AGTTATTTTTAACAAAATCA+AGG + chr1_4:486652-486671 None:intergenic 15.0%
!! ATGATATTACATTACATATA+TGG - chr1_4:488176-488195 Msa0141750:CDS 15.0%
!! ATAAAAACAAAAACTAGACA+AGG + chr1_4:484121-484140 None:intergenic 20.0%
!! ATAAGGTTGTTATAGTTATA+AGG - chr1_4:484661-484680 Msa0141750:CDS 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG - chr1_4:484717-484736 Msa0141750:CDS 20.0%
!! ATTTATGAGCTATAATATGT+AGG - chr1_4:484906-484925 Msa0141750:CDS 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - chr1_4:484933-484952 Msa0141750:CDS 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + chr1_4:485011-485030 None:intergenic 20.0%
!!! AATCAACTTTTTTTGTGTTT+TGG - chr1_4:485154-485173 Msa0141750:CDS 20.0%
!! CTAACAAAGATAAACATTAT+TGG - chr1_4:485485-485504 Msa0141750:intron 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG - chr1_4:485767-485786 Msa0141750:intron 20.0%
!! TAGTTGAAAATTAACAATCA+AGG + chr1_4:486081-486100 None:intergenic 20.0%
!!! TACATATTGATTAGTACTAT+AGG + chr1_4:486694-486713 None:intergenic 20.0%
!! TATAGTACTAATCAATATGT+AGG - chr1_4:486693-486712 Msa0141750:intron 20.0%
!! TTATATTCCGTTATTCATTT+AGG - chr1_4:486927-486946 Msa0141750:intron 20.0%
!! TATATTCCGTTATTCATTTA+GGG - chr1_4:486928-486947 Msa0141750:intron 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG - chr1_4:487046-487065 Msa0141750:intron 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG - chr1_4:487047-487066 Msa0141750:intron 20.0%
!!! TTTGTTTTTTGTTTTTGAGA+TGG - chr1_4:488412-488431 Msa0141750:five_prime_UTR 20.0%
!! TAAGGAAATGAAGTATCTTA+TGG + chr1_4:484091-484110 None:intergenic 25.0%
!!! TTTTGTTTCTAAATGGATCT+TGG - chr1_4:484155-484174 Msa0141750:three_prime_UTR 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG - chr1_4:484210-484229 Msa0141750:three_prime_UTR 25.0%
!!! TACCATTTATTTTTTGACTC+AGG + chr1_4:484215-484234 None:intergenic 25.0%
! AATAAATGGTACAACAACAA+TGG - chr1_4:484224-484243 Msa0141750:three_prime_UTR 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG + chr1_4:484422-484441 None:intergenic 25.0%
!!! CAGGTACAACATTTTTTTTT+AGG - chr1_4:484522-484541 Msa0141750:CDS 25.0%
! AATCTATATGGTATCCATTT+GGG - chr1_4:484624-484643 Msa0141750:CDS 25.0%
! TTAAGTCATGTCAAGAAAAA+AGG - chr1_4:484750-484769 Msa0141750:CDS 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG + chr1_4:484971-484990 None:intergenic 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + chr1_4:485464-485483 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + chr1_4:485465-485484 None:intergenic 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + chr1_4:485472-485491 None:intergenic 25.0%
! AATTTAAGGACCAAAATGAT+TGG + chr1_4:485601-485620 None:intergenic 25.0%
! AATCTCACACATTCAATTTA+AGG + chr1_4:485615-485634 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + chr1_4:485649-485668 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + chr1_4:485650-485669 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - chr1_4:485651-485670 Msa0141750:intron 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - chr1_4:485652-485671 Msa0141750:intron 25.0%
! CTTCAAACACAAATTTGATT+CGG + chr1_4:485871-485890 None:intergenic 25.0%
! GAATCAAATTTGTGTTTGAA+GGG - chr1_4:485870-485889 Msa0141750:intron 25.0%
! TGAAAAAACAAATTGATCGT+TGG - chr1_4:485975-485994 Msa0141750:CDS 25.0%
! AATAAGGTTGTTCATATTCT+TGG + chr1_4:486545-486564 None:intergenic 25.0%
! AAGAATATGAACAACCTTAT+TGG - chr1_4:486544-486563 Msa0141750:intron 25.0%
!! TGTATTTTATGTCTCTATGA+CGG - chr1_4:486829-486848 Msa0141750:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG + chr1_4:486873-486892 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - chr1_4:487113-487132 Msa0141750:CDS 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + chr1_4:487232-487251 None:intergenic 25.0%
! TAATTGGATTCCAATAACTT+GGG - chr1_4:487729-487748 Msa0141750:intron 25.0%
! AACAATAAAACAACTCAAGA+AGG - chr1_4:487991-488010 Msa0141750:CDS 25.0%
! AAAAAACAGTAAAGTGATGT+TGG - chr1_4:488369-488388 Msa0141750:five_prime_UTR 25.0%
!!! TTTTTGAGATGGTTTGTTTA+AGG - chr1_4:488423-488442 Msa0141750:five_prime_UTR 25.0%
CAAAAACTAGACAAGGTTTA+AGG + chr1_4:484114-484133 None:intergenic 30.0%
TTACTTAAACAAGAGAGATC+TGG - chr1_4:484254-484273 Msa0141750:three_prime_UTR 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - chr1_4:484368-484387 Msa0141750:three_prime_UTR 30.0%
! ATAAGACAATGCAGCATTTT+GGG + chr1_4:484462-484481 None:intergenic 30.0%
TTTCTGTTGTAACTAGACAT+AGG + chr1_4:484500-484519 None:intergenic 30.0%
TCTAGTTACAACAGAAATAC+AGG - chr1_4:484503-484522 Msa0141750:CDS 30.0%
GAATCTATATGGTATCCATT+TGG - chr1_4:484623-484642 Msa0141750:CDS 30.0%
ATCTATATGGTATCCATTTG+GGG - chr1_4:484625-484644 Msa0141750:CDS 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + chr1_4:484641-484660 None:intergenic 30.0%
GGGGAGCTAAAAAATTTATA+AGG - chr1_4:484644-484663 Msa0141750:CDS 30.0%
TGTCAAGAAAAAAGGAACAT+AGG - chr1_4:484758-484777 Msa0141750:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - chr1_4:484827-484846 Msa0141750:CDS 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - chr1_4:484828-484847 Msa0141750:CDS 30.0%
! TTTTTGCACAGTATACTAGA+GGG - chr1_4:484868-484887 Msa0141750:CDS 30.0%
! AAGAGCACACAACAAAAAAA+AGG + chr1_4:485118-485137 None:intergenic 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + chr1_4:485207-485226 None:intergenic 30.0%
ACAGTATTCAACAAACATCA+AGG + chr1_4:485222-485241 None:intergenic 30.0%
TTGTTGAATACTGTTTGAAC+AGG - chr1_4:485228-485247 Msa0141750:CDS 30.0%
ATAGGTAAAAGCAAATGATG+AGG + chr1_4:485360-485379 None:intergenic 30.0%
TGTACCAAAATTGCAAAAAG+GGG - chr1_4:485653-485672 Msa0141750:intron 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + chr1_4:485702-485721 None:intergenic 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + chr1_4:485729-485748 None:intergenic 30.0%
CGAATCAAATTTGTGTTTGA+AGG - chr1_4:485869-485888 Msa0141750:intron 30.0%
GAATCATTCAAAAGTCAATG+TGG - chr1_4:485925-485944 Msa0141750:CDS 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - chr1_4:486162-486181 Msa0141750:CDS 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - chr1_4:486163-486182 Msa0141750:CDS 30.0%
AAGCATTATCTTGTCCAATA+AGG + chr1_4:486561-486580 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + chr1_4:486821-486840 None:intergenic 30.0%
TGTAGTCCCTAAATGAATAA+CGG + chr1_4:486937-486956 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+CGG - chr1_4:486972-486991 Msa0141750:intron 30.0%
TGTGTATAAGGGATAAATTC+AGG - chr1_4:487058-487077 Msa0141750:intron 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + chr1_4:487599-487618 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - chr1_4:487636-487655 Msa0141750:intron 30.0%
GAAATAGACCCTATTCAAAT+GGG - chr1_4:487637-487656 Msa0141750:intron 30.0%
AAATAGACCCTATTCAAATG+GGG - chr1_4:487638-487657 Msa0141750:intron 30.0%
ATACTACAAAGCAAGCTAAT+TGG - chr1_4:487713-487732 Msa0141750:intron 30.0%
CTAATTGGATTCCAATAACT+TGG - chr1_4:487728-487747 Msa0141750:intron 30.0%
AATGCAAATGATGATCACTA+TGG - chr1_4:487811-487830 Msa0141750:intron 30.0%
CTAACATATCCAAATCATGT+TGG + chr1_4:488261-488280 None:intergenic 30.0%
! CAACATGATTTGGATATGTT+AGG - chr1_4:488259-488278 Msa0141750:CDS 30.0%
ATTTGGATATGTTAGGCAAA+TGG - chr1_4:488266-488285 Msa0141750:CDS 30.0%
ATGTTTCATGTGATGTTTGT+TGG - chr1_4:488310-488329 Msa0141750:CDS 30.0%
TGTTTCATGTGATGTTTGTT+GGG - chr1_4:488311-488330 Msa0141750:CDS 30.0%
AATAGTACAGAAGAACCCTT+TGG + chr1_4:484051-484070 None:intergenic 35.0%
! ACTAGACAAGGTTTAAGGTA+AGG + chr1_4:484109-484128 None:intergenic 35.0%
! TGTTTCTAAATGGATCTTGG+TGG - chr1_4:484158-484177 Msa0141750:three_prime_UTR 35.0%
! CATAAGACAATGCAGCATTT+TGG + chr1_4:484463-484482 None:intergenic 35.0%
TGTTGTAACTAGACATAGGA+TGG + chr1_4:484496-484515 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - chr1_4:484683-484702 Msa0141750:CDS 35.0%
! GTTTTTGCACAGTATACTAG+AGG - chr1_4:484867-484886 Msa0141750:CDS 35.0%
ATGTAAGGAGGATGTAGAAA+AGG + chr1_4:484999-485018 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - chr1_4:485240-485259 Msa0141750:CDS 35.0%
TAACTGCACATACATGCATT+TGG + chr1_4:485438-485457 None:intergenic 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + chr1_4:485660-485679 None:intergenic 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - chr1_4:485660-485679 Msa0141750:intron 35.0%
CTTGACAAGAGATACATTCA+AGG - chr1_4:485748-485767 Msa0141750:intron 35.0%
ATATGTGAATTGTTACGCTG+TGG + chr1_4:485905-485924 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - chr1_4:486103-486122 Msa0141750:CDS 35.0%
! GCAGTACTTTTGATCAACAA+CGG + chr1_4:486287-486306 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG - chr1_4:486290-486309 Msa0141750:CDS 35.0%
GGAACAACAATAGATGAAGA+AGG + chr1_4:486472-486491 None:intergenic 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - chr1_4:486472-486491 Msa0141750:intron 35.0%
TCATATTCTTGGAATGTTCC+TGG + chr1_4:486534-486553 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - chr1_4:486765-486784 Msa0141750:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - chr1_4:486766-486785 Msa0141750:intron 35.0%
CTAATCTAATCACATTCCGT+TGG + chr1_4:486991-487010 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG - chr1_4:487155-487174 Msa0141750:CDS 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG + chr1_4:487214-487233 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + chr1_4:487593-487612 None:intergenic 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + chr1_4:487622-487641 None:intergenic 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + chr1_4:487742-487761 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - chr1_4:487741-487760 Msa0141750:intron 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - chr1_4:487742-487761 Msa0141750:intron 35.0%
GTGATCATCATTTGCATTGT+AGG + chr1_4:487809-487828 None:intergenic 35.0%
ACCATCAGTCATGAGATTTA+GGG + chr1_4:487860-487879 None:intergenic 35.0%
AACCATCAGTCATGAGATTT+AGG + chr1_4:487861-487880 None:intergenic 35.0%
TAAATCTCATGACTGATGGT+TGG - chr1_4:487860-487879 Msa0141750:intron 35.0%
AAATCTCATGACTGATGGTT+GGG - chr1_4:487861-487880 Msa0141750:intron 35.0%
AATCACAATAGTCCTCCAAT+TGG - chr1_4:487886-487905 Msa0141750:intron 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + chr1_4:487982-488001 None:intergenic 35.0%
AGTTTGTGCAATGATCTTCT+AGG - chr1_4:488018-488037 Msa0141750:CDS 35.0%
ATACTTCCTTTACTCCTTAG+AGG - chr1_4:488058-488077 Msa0141750:CDS 35.0%
TTCTTCATCTTGTTCCTCTA+AGG + chr1_4:488075-488094 None:intergenic 35.0%
!! AAATCATGTTGGCATTGGTA+TGG + chr1_4:488250-488269 None:intergenic 35.0%
ATACCAATGCCAACATGATT+TGG - chr1_4:488249-488268 Msa0141750:CDS 35.0%
TATCCAAATCATGTTGGCAT+TGG + chr1_4:488255-488274 None:intergenic 35.0%
GATATGTTAGGCAAATGGTT+TGG - chr1_4:488271-488290 Msa0141750:CDS 35.0%
AACAGTAAAGTGATGTTGGT+TGG - chr1_4:488373-488392 Msa0141750:five_prime_UTR 35.0%
!! TTGAGATGGTTTGTTTAAGG+TGG - chr1_4:488426-488445 Msa0141750:five_prime_UTR 35.0%
!! TGAGATGGTTTGTTTAAGGT+GGG - chr1_4:488427-488446 Msa0141750:five_prime_UTR 35.0%
! AGAACCCTTTGGAAAAAGGA+AGG + chr1_4:484040-484059 None:intergenic 40.0%
! CAGAAGAACCCTTTGGAAAA+AGG + chr1_4:484044-484063 None:intergenic 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - chr1_4:484178-484197 Msa0141750:three_prime_UTR 40.0%
TGGTACAACAACAATGGATC+TGG - chr1_4:484230-484249 Msa0141750:three_prime_UTR 40.0%
TGATTCTACAGTACTGTTGG+AGG - chr1_4:484686-484705 Msa0141750:CDS 40.0%
GATTCTACAGTACTGTTGGA+GGG - chr1_4:484687-484706 Msa0141750:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - chr1_4:484834-484853 Msa0141750:CDS 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - chr1_4:484835-484854 Msa0141750:CDS 40.0%
AAAACCCATCTCCCTAAAAC+AGG + chr1_4:484842-484861 None:intergenic 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - chr1_4:485252-485271 Msa0141750:CDS 40.0%
! ATCCATTGAGAAGGTGTGAA+TGG + chr1_4:485282-485301 None:intergenic 40.0%
ATTCACACCTTCTCAATGGA+TGG - chr1_4:485281-485300 Msa0141750:CDS 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + chr1_4:485378-485397 None:intergenic 40.0%
AGATAAGCCAGCAGAATCAA+GGG + chr1_4:485391-485410 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG + chr1_4:485392-485411 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + chr1_4:485431-485450 None:intergenic 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1_4:485996-486015 Msa0141750:CDS 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1_4:485999-486018 Msa0141750:CDS 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1_4:485996-486015 Msa0141750:CDS 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1_4:485999-486018 Msa0141750:CDS 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - chr1_4:486167-486186 Msa0141750:CDS 40.0%
TTTGATTGATGCAGTGGGAT+GGG - chr1_4:486168-486187 Msa0141750:CDS 40.0%
GGAGAACAGATGGAAAGAAA+TGG - chr1_4:486245-486264 Msa0141750:CDS 40.0%
AGTAGTAGCAGCTGTATTTG+TGG + chr1_4:486392-486411 None:intergenic 40.0%
ACTTCAACCATTACTCCAAG+TGG - chr1_4:486412-486431 Msa0141750:intron 40.0%
TGATGAACCACTTGGAGTAA+TGG + chr1_4:486422-486441 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + chr1_4:486430-486449 None:intergenic 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + chr1_4:486599-486618 None:intergenic 40.0%
AGAATTGTGACTGAACATCG+TGG - chr1_4:486901-486920 Msa0141750:intron 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG + chr1_4:487215-487234 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG - chr1_4:487213-487232 Msa0141750:CDS 40.0%
TTTCATATGATGAGTCCTCG+AGG - chr1_4:487269-487288 Msa0141750:intron 40.0%
TCCTCGAGGAACAATGAATT+CGG - chr1_4:487283-487302 Msa0141750:intron 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + chr1_4:487326-487345 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + chr1_4:487327-487346 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + chr1_4:487336-487355 None:intergenic 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + chr1_4:487337-487356 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + chr1_4:487374-487393 None:intergenic 40.0%
GTCGTCGATAAAATGCCTAA+GGG + chr1_4:487428-487447 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG + chr1_4:487429-487448 None:intergenic 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + chr1_4:487454-487473 None:intergenic 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + chr1_4:487455-487474 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - chr1_4:487605-487624 Msa0141750:intron 40.0%
CACCTAACCCCATTTGAATA+GGG + chr1_4:487648-487667 None:intergenic 40.0%
ACACCTAACCCCATTTGAAT+AGG + chr1_4:487649-487668 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - chr1_4:487649-487668 Msa0141750:intron 40.0%
AATGATGATCACTATGGCAG+AGG - chr1_4:487817-487836 Msa0141750:intron 40.0%
ATCAGTCATGAGATTTAGGG+CGG + chr1_4:487857-487876 None:intergenic 40.0%
GTCCTTCAAAAGACTGCATT+CGG - chr1_4:487925-487944 Msa0141750:intron 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + chr1_4:487930-487949 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - chr1_4:488030-488049 Msa0141750:CDS 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG + chr1_4:488067-488086 None:intergenic 40.0%
! GATGTTTGTTGGGAGTGATT+TGG - chr1_4:488321-488340 Msa0141750:exon 40.0%
!! GAGATGGTTTGTTTAAGGTG+GGG - chr1_4:488428-488447 Msa0141750:five_prime_UTR 40.0%
! ACGTGCCTTCCTTTTTCCAA+AGG - chr1_4:484032-484051 Msa0141750:three_prime_UTR 45.0%
! CGTGCCTTCCTTTTTCCAAA+GGG - chr1_4:484033-484052 Msa0141750:three_prime_UTR 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - chr1_4:484173-484192 Msa0141750:three_prime_UTR 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG - chr1_4:484698-484717 Msa0141750:CDS 45.0%
GACCATTCACACCTTCTCAA+TGG - chr1_4:485277-485296 Msa0141750:CDS 45.0%
ACCTTCTCAATGGATGGAGT+TGG - chr1_4:485287-485306 Msa0141750:CDS 45.0%
TCCAACTCCATCCATTGAGA+AGG + chr1_4:485291-485310 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - chr1_4:485296-485315 Msa0141750:CDS 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - chr1_4:485381-485400 Msa0141750:intron 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - chr1_4:485663-485682 Msa0141750:intron 45.0%
AAACATGTCATGTGAGGTGG+TGG - chr1_4:486002-486021 Msa0141750:CDS 45.0%
TTGATTGATGCAGTGGGATG+GGG - chr1_4:486169-486188 Msa0141750:CDS 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + chr1_4:486201-486220 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - chr1_4:486207-486226 Msa0141750:CDS 45.0%
! TGCGAAAGGCATATGAACAG+AGG - chr1_4:486304-486323 Msa0141750:CDS 45.0%
TGTATTTGTGGTTCCACCAG+TGG + chr1_4:486380-486399 None:intergenic 45.0%
! TTGGAAACAGTGTTGCTACC+AGG + chr1_4:486493-486512 None:intergenic 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG + chr1_4:486512-486531 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + chr1_4:486593-486612 None:intergenic 45.0%
CCTCGAGGAACAATGAATTC+GGG - chr1_4:487284-487303 Msa0141750:intron 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + chr1_4:487320-487339 None:intergenic 45.0%
ACAGAAAACCTCCACTTTGC+TGG - chr1_4:487339-487358 Msa0141750:intron 45.0%
CAGAAAACCTCCACTTTGCT+GGG - chr1_4:487340-487359 Msa0141750:intron 45.0%
TGAAGATGAACCGAAGGTTC+GGG + chr1_4:487368-487387 None:intergenic 45.0%
GTGAAGATGAACCGAAGGTT+CGG + chr1_4:487369-487388 None:intergenic 45.0%
CACTTGAGCGGTTATGATGT+TGG + chr1_4:487474-487493 None:intergenic 45.0%
CAACATCATAACCGCTCAAG+TGG - chr1_4:487472-487491 Msa0141750:intron 45.0%
! ACCGCTCAAGTGGTTTTTCT+TGG - chr1_4:487482-487501 Msa0141750:intron 45.0%
GCCAAGAAAAACCACTTGAG+CGG + chr1_4:487486-487505 None:intergenic 45.0%
! CTCAAGTGGTTTTTCTTGGC+CGG - chr1_4:487486-487505 Msa0141750:intron 45.0%
TTCAACACCGATGACTTCCT+CGG - chr1_4:487546-487565 Msa0141750:intron 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + chr1_4:487556-487575 None:intergenic 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + chr1_4:487590-487609 None:intergenic 45.0%
GACCCTATTCAAATGGGGTT+AGG - chr1_4:487643-487662 Msa0141750:intron 45.0%
AGATGAAGAACCTCTCCAAG+TGG + chr1_4:487772-487791 None:intergenic 45.0%
GCCCTAAATCTCATGACTGA+TGG - chr1_4:487856-487875 Msa0141750:intron 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + chr1_4:487923-487942 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG - chr1_4:487949-487968 Msa0141750:intron 45.0%
! AAGTGATGTTGGTTGGAGTG+TGG - chr1_4:488380-488399 Msa0141750:five_prime_UTR 45.0%
!! AGTTCTGGAAGCATGCATGG+AGG - chr1_4:485255-485274 Msa0141750:CDS 50.0%
GATAGCGTGTCACACGTTCA+AGG - chr1_4:485809-485828 Msa0141750:intron 50.0%
CCACAGGCTTTCTTGAACGA+TGG + chr1_4:486333-486352 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG - chr1_4:486330-486349 Msa0141750:intron 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG - chr1_4:486334-486353 Msa0141750:intron 50.0%
!! CACTCTTAGCTTTGCACACC+AGG - chr1_4:486513-486532 Msa0141750:intron 50.0%
TGTCTCTATGACGGCTGTTG+AGG - chr1_4:486838-486857 Msa0141750:intron 50.0%
CAACACTAGTGAGAGGATGC+AGG - chr1_4:487162-487181 Msa0141750:CDS 50.0%
ACTAGTGAGAGGATGCAGGA+TGG - chr1_4:487166-487185 Msa0141750:CDS 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG + chr1_4:487211-487230 None:intergenic 50.0%
CCCGAATTCATTGTTCCTCG+AGG + chr1_4:487287-487306 None:intergenic 50.0%
AACCCTACAAACCGAGATGC+AGG - chr1_4:487391-487410 Msa0141750:intron 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG + chr1_4:487396-487415 None:intergenic 50.0%
ATTGCTGAGAGCCTGCATCT+CGG + chr1_4:487405-487424 None:intergenic 50.0%
AGCTCGACATGCAGTCTGAT+AGG - chr1_4:487509-487528 Msa0141750:intron 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - chr1_4:487745-487764 Msa0141750:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - chr1_4:487754-487773 Msa0141750:intron 50.0%
GTTGGCGATGATCCAATTGG+AGG + chr1_4:487901-487920 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - chr1_4:487901-487920 Msa0141750:intron 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + chr1_4:487919-487938 None:intergenic 50.0%
TTCTGCCCTTGGACTACTAC+CGG + chr1_4:487971-487990 None:intergenic 50.0%
ATTGATGCAGTGGGATGGGG+AGG - chr1_4:486172-486191 Msa0141750:CDS 55.0%
GGATGGGGAGGATTCCATCT+GGG - chr1_4:486184-486203 Msa0141750:CDS 55.0%
AACAACACCGATCCGGAACC+AGG - chr1_4:486214-486233 Msa0141750:CDS 55.0%
TCTGTTCTCCTGCACCTTCC+TGG + chr1_4:486235-486254 None:intergenic 55.0%
! GGAAGGTGCAGGAGAACAGA+TGG - chr1_4:486235-486254 Msa0141750:CDS 55.0%
AAGCCTGTGGAAGGCCAATC+TGG - chr1_4:486343-486362 Msa0141750:intron 55.0%
CTGCTGCCAACACCATCAAC+AGG - chr1_4:486584-486603 Msa0141750:intron 55.0%
ACGGCTCAGATCATAGTCGC+AGG + chr1_4:486802-486821 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - chr1_4:486801-486820 Msa0141750:intron 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG + chr1_4:487202-487221 None:intergenic 55.0%
TTGCTGGGAACCCGAACCTT+CGG - chr1_4:487355-487374 Msa0141750:intron 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG + chr1_4:487397-487416 None:intergenic 55.0%
CAGGCTCTCAGCAATCCCTT+AGG - chr1_4:487410-487429 Msa0141750:intron 55.0%
TCAGACTGCATGTCGAGCTC+CGG + chr1_4:487508-487527 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + chr1_4:487566-487585 None:intergenic 55.0%
AATGGGTGGTCCACTTGGAG+AGG - chr1_4:487759-487778 Msa0141750:intron 55.0%
CCGGTTGGCGATGATCCAAT+TGG + chr1_4:487904-487923 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - chr1_4:487963-487982 Msa0141750:intron 55.0%
GGGATGGGGAGGATTCCATC+TGG - chr1_4:486183-486202 Msa0141750:CDS 60.0%
ACACCGATCCGGAACCAGGA+AGG - chr1_4:486218-486237 Msa0141750:CDS 60.0%
GCACCTTCCTGGTTCCGGAT+CGG + chr1_4:486224-486243 None:intergenic 60.0%
! ATCCGGAACCAGGAAGGTGC+AGG - chr1_4:486224-486243 Msa0141750:CDS 60.0%
CTCCTGCACCTTCCTGGTTC+CGG + chr1_4:486229-486248 None:intergenic 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG + chr1_4:486349-486368 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG - chr1_4:486348-486367 Msa0141750:intron 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG + chr1_4:486360-486379 None:intergenic 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + chr1_4:486369-486388 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + chr1_4:487193-487212 None:intergenic 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + chr1_4:487350-487369 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + chr1_4:487353-487372 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - chr1_4:487962-487981 Msa0141750:intron 60.0%
TCTGGCCAGGCTCTCACCAC+TGG - chr1_4:486361-486380 Msa0141750:intron 65.0%
GGCCAGGCTCTCACCACTGG+TGG - chr1_4:486364-486383 Msa0141750:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 484004 488502 484004 ID=Msa0141750;Name=Msa0141750
chr1_4 mRNA 484004 488502 484004 ID=Msa0141750-mRNA-1;Parent=Msa0141750;Name=Msa0141750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=163|1|1|1|1|1|4|425|639
chr1_4 exon 484004 485371 484004 ID=Msa0141750-mRNA-1:exon:48;Parent=Msa0141750-mRNA-1
chr1_4 exon 485901 486324 485901 ID=Msa0141750-mRNA-1:exon:47;Parent=Msa0141750-mRNA-1
chr1_4 exon 487062 487256 487062 ID=Msa0141750-mRNA-1:exon:46;Parent=Msa0141750-mRNA-1
chr1_4 exon 487982 488502 487982 ID=Msa0141750-mRNA-1:exon:45;Parent=Msa0141750-mRNA-1
chr1_4 five_prime_UTR 488340 488502 488340 ID=Msa0141750-mRNA-1:five_prime_utr;Parent=Msa0141750-mRNA-1
chr1_4 CDS 487982 488339 487982 ID=Msa0141750-mRNA-1:cds;Parent=Msa0141750-mRNA-1
chr1_4 CDS 487062 487256 487062 ID=Msa0141750-mRNA-1:cds;Parent=Msa0141750-mRNA-1
chr1_4 CDS 485901 486324 485901 ID=Msa0141750-mRNA-1:cds;Parent=Msa0141750-mRNA-1
chr1_4 CDS 484429 485371 484429 ID=Msa0141750-mRNA-1:cds;Parent=Msa0141750-mRNA-1
chr1_4 three_prime_UTR 484004 484428 484004 ID=Msa0141750-mRNA-1:three_prime_utr;Parent=Msa0141750-mRNA-1
Gene Sequence

>Msa0141750

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTCACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGCAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTGCTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTAGCAACACTGTTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAAGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAG
Protein sequence

>Msa0141750

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTAATTTSTITPSGSSKQINSAAASPSSSIVVPGSNTVSNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSSGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLGNNTSFTP*