AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583430 MtrunA17_Chr7g0246681 97.963 589 12 0 1 589 1 589 0.0 1208
Msa0583430 MtrunA17_Chr8g0350351 78.347 605 112 3 1 589 1 602 0.0 967
Msa0583430 MtrunA17_Chr8g0388881 45.591 533 264 8 73 587 96 620 4.91e-170 497
Msa0583430 MtrunA17_Chr1g0203741 40.843 617 327 10 2 587 8 617 2.45e-168 493
Msa0583430 MtrunA17_Chr4g0055031 46.014 552 259 11 58 587 69 603 2.64e-168 492
Msa0583430 MtrunA17_Chr7g0246701 46.415 530 256 9 78 587 104 625 2.60e-165 485
Msa0583430 MtrunA17_Chr8g0361791 45.203 542 269 8 62 587 71 600 4.85e-165 484
Msa0583430 MtrunA17_Chr8g0350391 44.991 529 266 7 78 587 108 630 9.53e-165 484
Msa0583430 MtrunA17_Chr5g0416991 44.465 542 272 8 62 587 71 599 7.49e-163 478
Msa0583430 MtrunA17_Chr6g0472571 44.045 529 267 9 78 587 108 626 3.28e-161 474
Msa0583430 MtrunA17_Chr8g0369481 43.454 527 270 8 78 587 73 588 1.45e-155 459
Msa0583430 MtrunA17_Chr7g0214551 43.470 536 269 10 75 585 43 569 1.22e-153 453
Msa0583430 MtrunA17_Chr3g0092501 43.691 531 267 8 73 587 83 597 3.75e-151 448
Msa0583430 MtrunA17_Chr5g0409411 43.503 531 274 9 74 588 71 591 2.16e-147 438
Msa0583430 MtrunA17_Chr1g0167381 40.669 568 308 9 42 587 55 615 1.20e-145 434
Msa0583430 MtrunA17_Chr1g0183721 38.648 577 328 9 29 587 17 585 1.51e-143 428
Msa0583430 MtrunA17_Chr3g0130381 41.468 545 283 12 65 588 248 777 3.21e-143 433
Msa0583430 MtrunA17_Chr1g0187601 41.296 540 292 9 66 587 82 614 6.75e-141 422
Msa0583430 MtrunA17_Chr3g0125511 41.431 531 273 14 80 588 229 743 2.90e-139 422
Msa0583430 MtrunA17_Chr8g0384431 42.231 502 255 11 84 563 298 786 2.22e-138 422
Msa0583430 MtrunA17_Chr5g0437501 41.255 526 270 12 83 588 100 606 3.89e-138 415
Msa0583430 MtrunA17_Chr3g0112341 42.155 529 279 11 73 586 151 667 9.70e-137 413
Msa0583430 MtrunA17_Chr3g0113981 40.561 535 288 8 63 588 156 669 9.03e-136 410
Msa0583430 MtrunA17_Chr5g0435751 39.927 551 286 11 50 586 100 619 4.38e-135 407
Msa0583430 MtrunA17_Chr1g0171781 40.189 530 292 9 75 589 86 605 6.02e-135 406
Msa0583430 MtrunA17_Chr8g0372471 41.731 520 275 9 83 588 386 891 2.87e-134 413
Msa0583430 MtrunA17_Chr1g0159741 41.040 519 277 11 83 584 150 656 3.03e-130 396
Msa0583430 MtrunA17_Chr5g0426281 33.092 553 324 12 65 588 136 671 1.82e-97 311
Msa0583430 MtrunA17_Chr3g0115931 32.605 549 326 14 73 588 152 689 1.05e-90 294
Msa0583430 MtrunA17_Chr1g0155141 33.843 523 303 15 81 588 206 700 4.46e-89 290
Msa0583430 MtrunA17_Chr5g0404771 48.879 223 108 3 83 301 328 548 5.16e-72 241
Msa0583430 MtrunA17_Chr4g0043121 29.114 395 251 8 6 377 13 401 4.54e-54 189
Msa0583430 MtrunA17_Chr5g0404761 36.934 287 156 7 313 588 1 273 9.17e-54 184
Msa0583430 MtrunA17_Chr4g0043131 46.405 153 73 3 438 588 39 184 1.73e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583430 AT4G00740.1 72.483 596 156 2 1 589 1 595 0.0 937
Msa0583430 AT4G00740.2 72.483 596 156 2 1 589 1 595 0.0 937
Msa0583430 AT4G00750.1 45.810 537 259 7 74 587 95 622 1.12e-166 489
Msa0583430 AT4G10440.1 44.404 545 274 9 63 587 81 616 4.54e-166 487
Msa0583430 AT1G33170.1 43.088 557 289 8 50 587 87 634 3.52e-164 483
Msa0583430 AT2G45750.1 44.527 539 269 8 74 589 86 617 9.44e-163 479
Msa0583430 AT1G31850.1 41.864 590 306 11 25 587 17 596 6.51e-161 473
Msa0583430 AT1G31850.2 41.864 590 306 11 25 587 17 596 6.51e-161 473
Msa0583430 AT1G31850.4 41.864 590 306 11 25 587 17 596 6.51e-161 473
Msa0583430 AT1G31850.3 41.864 590 306 11 25 587 17 596 6.51e-161 473
Msa0583430 AT1G26850.2 45.047 535 264 10 73 587 84 608 1.79e-159 470
Msa0583430 AT1G26850.1 45.047 535 264 10 73 587 84 608 1.79e-159 470
Msa0583430 AT4G19120.1 43.962 530 273 8 74 587 69 590 1.53e-158 467
Msa0583430 AT4G19120.2 43.962 530 273 8 74 587 69 590 1.53e-158 467
Msa0583430 AT4G18030.1 45.386 531 262 9 74 587 84 603 3.41e-157 464
Msa0583430 AT2G43200.2 43.429 525 273 9 78 586 94 610 7.19e-151 447
Msa0583430 AT2G43200.1 43.429 525 273 9 78 586 94 610 7.19e-151 447
Msa0583430 AT3G23300.2 41.989 543 288 9 65 587 66 601 5.79e-147 437
Msa0583430 AT3G23300.1 41.989 543 288 9 65 587 66 601 5.79e-147 437
Msa0583430 AT4G14360.1 43.676 506 263 7 73 563 74 572 3.27e-145 433
Msa0583430 AT4G14360.2 43.676 506 263 7 73 563 74 572 3.27e-145 433
Msa0583430 AT1G04430.1 37.851 605 331 9 22 587 15 613 2.79e-144 431
Msa0583430 AT1G04430.3 37.851 605 331 9 22 587 15 613 2.79e-144 431
Msa0583430 AT1G04430.2 37.851 605 331 9 22 587 15 613 2.79e-144 431
Msa0583430 AT2G34300.2 43.074 527 260 14 84 588 250 758 4.44e-143 433
Msa0583430 AT2G34300.3 43.074 527 260 14 84 588 250 758 4.44e-143 433
Msa0583430 AT2G34300.1 43.074 527 260 14 84 588 250 758 4.44e-143 433
Msa0583430 AT5G64030.1 42.803 528 261 13 84 588 308 817 5.56e-142 432
Msa0583430 AT1G29470.1 42.125 527 265 12 84 588 250 758 2.53e-140 426
Msa0583430 AT1G29470.2 42.125 527 265 12 84 588 250 758 2.53e-140 426
Msa0583430 AT2G39750.1 40.789 532 282 13 73 586 175 691 5.81e-137 415
Msa0583430 AT5G06050.1 40.530 528 285 11 73 584 147 661 1.14e-136 414
Msa0583430 AT1G77260.1 40.038 532 284 13 73 586 141 655 1.63e-136 412
Msa0583430 AT3G10200.1 41.026 546 289 11 60 589 62 590 5.85e-136 409
Msa0583430 AT3G51070.1 39.894 564 303 12 46 588 342 890 9.71e-134 412
Msa0583430 AT2G40280.1 40.000 560 288 16 46 588 54 582 1.18e-133 403
Msa0583430 AT5G14430.1 41.091 550 300 8 58 589 63 606 3.33e-133 402
Msa0583430 AT5G04060.1 39.338 544 299 9 60 589 73 599 8.41e-132 398
Msa0583430 AT3G56080.1 41.313 518 269 13 84 588 114 609 1.76e-131 398
Msa0583430 AT4G19120.3 44.907 432 221 5 74 489 69 499 2.20e-131 394
Msa0583430 AT5G14430.2 40.727 550 302 8 58 589 63 606 3.81e-131 397
Msa0583430 AT3G10200.2 42.596 493 253 9 60 538 62 538 1.02e-127 388
Msa0583430 AT3G51070.2 40.900 489 263 10 46 513 342 825 5.60e-120 375
Msa0583430 AT1G26850.3 44.928 414 205 8 73 467 84 493 6.98e-119 362
Msa0583430 AT3G56080.2 43.119 436 227 11 84 506 114 541 4.45e-117 358
Msa0583430 AT1G19430.1 35.000 520 302 12 81 588 228 723 1.03e-95 308
Msa0583430 AT1G19430.3 35.000 520 302 12 81 588 228 723 1.03e-95 308
Msa0583430 AT1G78240.1 33.396 533 320 12 73 576 144 670 1.30e-92 299
Msa0583430 AT1G78240.2 33.396 533 320 12 73 576 144 670 1.30e-92 299
Msa0583430 AT1G13860.4 32.370 519 298 11 106 588 101 602 2.77e-87 283
Msa0583430 AT1G13860.3 32.370 519 298 11 106 588 101 602 2.77e-87 283
Msa0583430 AT1G13860.1 32.370 519 298 11 106 588 101 602 2.77e-87 283
Msa0583430 AT1G13860.5 32.370 519 298 11 106 588 101 602 2.77e-87 283
Msa0583430 AT2G03480.2 30.839 548 310 11 73 588 84 594 3.68e-84 275
Msa0583430 AT2G03480.1 31.009 545 324 12 73 588 84 605 3.42e-82 270
Msa0583430 AT1G13860.2 32.538 461 265 9 159 588 1 446 1.66e-77 253
Msa0583430 AT1G19430.2 31.937 382 235 9 81 451 228 595 2.76e-54 194
Msa0583430 AT2G03480.3 28.750 320 211 5 73 377 84 401 4.22e-44 163

Find 202 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAGAACACCTCCATTTA+TGG 0.152108 4_2:-1978319 None:intergenic
AGACTTCCATTTCCTGCTTT+TGG 0.176323 4_2:+1978600 Msa0583430:CDS
GATCTGATTAATAAGCTATT+TGG 0.180942 4_2:-1975949 None:intergenic
CACTGACAACGGTGTTATTT+AGG 0.188484 4_2:+1980915 Msa0583430:three_prime_UTR
CACACCTTATGCATGCTTTC+AGG 0.213467 4_2:-1976384 None:intergenic
GAGAAAGAGTAATGAGAAAA+AGG 0.217310 4_2:-1976064 None:intergenic
TTACTTCAGGTTGCTAGTTT+TGG 0.217337 4_2:+1978453 Msa0583430:intron
ATTGAGGAAGGGATGTTAAA+TGG 0.234055 4_2:+1976180 Msa0583430:CDS
ATCTTTGACAGAGGACTTAT+TGG 0.248824 4_2:+1979495 Msa0583430:CDS
CTTGAATTATGTGATGATTC+TGG 0.250630 4_2:+1978983 Msa0583430:CDS
ATGGACATGAATGCATTATA+TGG 0.268695 4_2:+1979390 Msa0583430:CDS
GTTCGAGGGTATGTTGAAAA+AGG 0.289047 4_2:-1980010 None:intergenic
AGTCAATACATTCCCATAAA+TGG 0.293619 4_2:+1978306 Msa0583430:CDS
TCCTGTTCGGTGGGCTAAAC+AGG 0.305359 4_2:+1978829 Msa0583430:CDS
TTCATATAAAGAAAACATTA+AGG 0.306553 4_2:+1981017 Msa0583430:three_prime_UTR
GTCAGGTTCTTTATCATAAA+TGG 0.310121 4_2:-1980829 None:intergenic
ATTGAAATTGATTTCAAAAT+CGG 0.318288 4_2:-1975923 None:intergenic
AATTCTTATGCTTCATGATC+TGG 0.328562 4_2:-1975627 None:intergenic
GCCTAATGGGTATCGGGTTC+CGG 0.340054 4_2:+1976353 Msa0583430:CDS
CCTGTCAGCAATCTTGTTGT+GGG 0.348589 4_2:-1978181 None:intergenic
TTGACTTGGTTCATTGTTCT+CGG 0.348912 4_2:+1978625 Msa0583430:CDS
GTAGAGAGATGAATTACTAT+AGG 0.350347 4_2:+1976280 Msa0583430:CDS
ATCAAAGATCTTATGCTTCA+AGG 0.353333 4_2:-1975660 None:intergenic
ATTCAACATTACTTATTCAT+TGG 0.356578 4_2:+1981151 Msa0583430:three_prime_UTR
CCTTGGTCGCCGCCGTGTGC+TGG 0.360888 4_2:+1976110 Msa0583430:CDS
CTTCCTAATGGAAATGAGTT+TGG 0.361568 4_2:+1978959 Msa0583430:CDS
TAGAGAGATGAATTACTATA+GGG 0.363989 4_2:+1976281 Msa0583430:CDS
GTTTGATTCCACCGCCTAAT+GGG 0.364461 4_2:+1976340 Msa0583430:CDS
GGAGAGACATTGTCCTTTGC+CGG 0.366173 4_2:+1976302 Msa0583430:CDS
ATGTAATATTGTTGATTTGA+TGG 0.368215 4_2:+1980698 Msa0583430:CDS
ACACCACCACTGAACAATAA+AGG 0.370225 4_2:-1980946 None:intergenic
TCCATAACGTTGCGTATTGA+TGG 0.372172 4_2:-1979372 None:intergenic
TGTTTGATTCCACCGCCTAA+TGG 0.375674 4_2:+1976339 Msa0583430:CDS
GCTACTTTGTCAATTACTTC+GGG 0.378208 4_2:-1980774 None:intergenic
ATATGATCCACCTCACTTGC+AGG 0.378217 4_2:-1976222 None:intergenic
ATCTGATTAATAAGCTATTT+GGG 0.380180 4_2:-1975948 None:intergenic
ATATATTGTTCTGCTCCATC+TGG 0.387453 4_2:-1978273 None:intergenic
CGCTACTTTGTCAATTACTT+CGG 0.388361 4_2:-1980775 None:intergenic
AGACCAAACTCATTTCCATT+AGG 0.395331 4_2:-1978962 None:intergenic
ATCAAAGGAGATTATGCTAT+TGG 0.396451 4_2:+1979198 Msa0583430:CDS
TCCTGTCAGCAATCTTGTTG+TGG 0.396608 4_2:-1978182 None:intergenic
TTGAATTATGTGATGATTCT+GGG 0.400181 4_2:+1978984 Msa0583430:CDS
TCCTGTTTAGCCCACCGAAC+AGG 0.405950 4_2:-1978830 None:intergenic
AATTCACTAAATATAAAGTT+GGG 0.410505 4_2:+1979345 Msa0583430:CDS
TCCATCAATACGCAACGTTA+TGG 0.412610 4_2:+1979371 Msa0583430:CDS
TCAAATCCAAAAGCAGGAAA+TGG 0.413279 4_2:-1978606 None:intergenic
TACATGAAAACACTGCAATC+TGG 0.414035 4_2:+1978912 Msa0583430:CDS
CTCAGAACACCTCCATTTAT+GGG 0.417404 4_2:-1978318 None:intergenic
GCAGATTCGTGTCTTCCTAA+TGG 0.418281 4_2:+1978947 Msa0583430:CDS
CCGTCTTGTGGTGGCTATTG+AGG 0.420421 4_2:+1976164 Msa0583430:CDS
TTGAGGAAGGGATGTTAAAT+GGG 0.428861 4_2:+1976181 Msa0583430:CDS
CACCACCACTGAACAATAAA+GGG 0.429403 4_2:-1980945 None:intergenic
TGCAACTTATTTCATTGAAG+TGG 0.430659 4_2:+1978763 Msa0583430:CDS
ATAAAGAAAACATTAAGGTT+AGG 0.431045 4_2:+1981022 Msa0583430:three_prime_UTR
GGTGCGGCAGTTAGCCTCTC+TGG 0.433582 4_2:-1979237 None:intergenic
TGCTGACAGGAAAGGTCACC+AGG 0.435156 4_2:+1978194 Msa0583430:CDS
TTTGATTAAGGGATTGAAAA+GGG 0.439019 4_2:-1975898 None:intergenic
CGAAGTGTTGTTGTCGGTGG+TGG 0.443615 4_2:-1975752 None:intergenic
TTCCACCGCCTAATGGGTAT+CGG 0.445816 4_2:+1976346 Msa0583430:CDS
AAATTTACCAAGCTTGACTT+AGG 0.450311 4_2:-1979009 None:intergenic
TGGACATGAATGCATTATAT+GGG 0.450687 4_2:+1979391 Msa0583430:CDS
TTGTTACGAAGTGTTGTTGT+CGG 0.451273 4_2:-1975758 None:intergenic
TGCGATTTATGTGAATCTCT+TGG 0.452077 4_2:-1978519 None:intergenic
ATCGCAGATACAATTTGCCT+TGG 0.452382 4_2:+1978536 Msa0583430:CDS
AATAGACAGTGAAATATAAC+CGG 0.452686 4_2:-1981190 None:intergenic
AGTTAGCCTCTCTGGCCACT+TGG 0.453186 4_2:-1979229 None:intergenic
TGGATATAGAATGTAGTGTT+AGG 0.454081 4_2:-1975855 None:intergenic
CGTGTGTTGGTGCGTTTCCA+TGG 0.459289 4_2:-1976009 None:intergenic
TGCCTTGGAAAGAGGAATAC+CGG 0.462056 4_2:+1978551 Msa0583430:CDS
GAATTCACTAAATATAAAGT+TGG 0.462143 4_2:+1979344 Msa0583430:CDS
AACTTACTGTAGGCTGTAAA+CGG 0.470172 4_2:-1978657 None:intergenic
CCAGCACACGGCGGCGACCA+AGG 0.472017 4_2:-1976110 None:intergenic
TTAGAGCTTCCATAAGGTCT+TGG 0.472115 4_2:-1980883 None:intergenic
GGCTAACTGCCGCACCTTCG+AGG 0.477419 4_2:+1979244 Msa0583430:CDS
TCATCTCCGGTCCTCCTGTT+CGG 0.477553 4_2:+1978816 Msa0583430:CDS
ACTGCACTTGACATGGGATG+TGG 0.486235 4_2:+1978342 Msa0583430:CDS
TTATTGGTGTCTATCATGAT+TGG 0.487456 4_2:+1979511 Msa0583430:CDS
CTCCGGTCCTCCTGTTCGGT+GGG 0.487962 4_2:+1978820 Msa0583430:CDS
AGGTCCCCTCTCCTGAAAAC+CGG 0.489154 4_2:+1979264 Msa0583430:CDS
AAAAGAATGGTCAGATCTCC+AGG 0.491502 4_2:+1978853 Msa0583430:CDS
TCTCCGGTCCTCCTGTTCGG+TGG 0.493729 4_2:+1978819 Msa0583430:CDS
AAACAAACCGCAGTCTCCTC+CGG 0.498274 4_2:-1976321 None:intergenic
ATACAATTTGCCTTGGAAAG+AGG 0.505244 4_2:+1978543 Msa0583430:CDS
ACAAGGCCTTTGCCACAGCC+TGG 0.506176 4_2:-1978871 None:intergenic
CTTATAAAAGATCCAGCTAC+TGG 0.507119 4_2:+1980067 Msa0583430:CDS
TGGAAACATCGTACCACCAC+CGG 0.508503 4_2:-1978253 None:intergenic
TCCACCGCCTAATGGGTATC+GGG 0.510810 4_2:+1976347 Msa0583430:CDS
CTTCTCGTTTCATCCACCCC+TGG 0.511990 4_2:-1978212 None:intergenic
CTTGTGGTGGCTATTGAGGA+AGG 0.519378 4_2:+1976168 Msa0583430:CDS
ACAAGACGGTTGCGCTGTTG+TGG 0.521805 4_2:-1976150 None:intergenic
CTGTCAGCAATCTTGTTGTG+GGG 0.522422 4_2:-1978180 None:intergenic
GTTAGCCTCTCTGGCCACTT+GGG 0.524844 4_2:-1979228 None:intergenic
ACCAAGTCAAATCCAAAAGC+AGG 0.525653 4_2:-1978612 None:intergenic
AACGCACCAACACACGTCAA+TGG 0.527589 4_2:+1976016 Msa0583430:CDS
AGATCTCCAGGCTGTGGCAA+AGG 0.528686 4_2:+1978865 Msa0583430:CDS
GGTATCGGGTTCCGGTGAGG+TGG 0.533757 4_2:+1976361 Msa0583430:CDS
CACTAAGCTGTGGGTACGGA+GGG 0.534730 4_2:+1979308 Msa0583430:CDS
CAGCACACGGCGGCGACCAA+GGG 0.536436 4_2:-1976109 None:intergenic
GCGGCCGGAGGGAACTGTTG+TGG 0.538147 4_2:+1980740 Msa0583430:CDS
CACTTTATATTCCCCGGTGG+TGG 0.538896 4_2:+1978240 Msa0583430:CDS
GTTAAATGGGAAGAGTATTG+AGG 0.539727 4_2:+1976194 Msa0583430:CDS
GGAAGACACGAATCTGCTGC+TGG 0.540770 4_2:-1978941 None:intergenic
TCTGAGGACTGCACTTGACA+TGG 0.541511 4_2:+1978335 Msa0583430:CDS
CCAAGCATAGCAACAAAAGC+CGG 0.542023 4_2:-1978570 None:intergenic
ACCGCAGTCTCCTCCGGCAA+AGG 0.543088 4_2:-1976315 None:intergenic
AACCGGTGTTGATGTATATG+AGG 0.547717 4_2:+1979281 Msa0583430:CDS
CTGGGGACCTAAGTCAAGCT+TGG 0.550202 4_2:+1979002 Msa0583430:CDS
AAATTCCCTTTATTGTTCAG+TGG 0.552777 4_2:+1980940 Msa0583430:three_prime_UTR
TAATATTGTTGATTTGATGG+TGG 0.554493 4_2:+1980701 Msa0583430:CDS
AGCCGGTATTCCTCTTTCCA+AGG 0.555587 4_2:-1978553 None:intergenic
TTCCCTTTATTGTTCAGTGG+TGG 0.555845 4_2:+1980943 Msa0583430:three_prime_UTR
TGTTGGTGCGTTTCCATGGT+GGG 0.555874 4_2:-1976005 None:intergenic
CTTGATGCGATCTTTGACAG+AGG 0.556268 4_2:+1979486 Msa0583430:CDS
GGTGGATATCTAGTCATCTC+CGG 0.556504 4_2:+1978803 Msa0583430:CDS
TCCTTTGCCGGAGGAGACTG+CGG 0.558889 4_2:+1976314 Msa0583430:CDS
ACAGGAAAGGTCACCAGGGG+TGG 0.559143 4_2:+1978199 Msa0583430:CDS
CTGCACTTGACATGGGATGT+GGG 0.561100 4_2:+1978343 Msa0583430:CDS
GGTCAACACTTTATATTCCC+CGG 0.564775 4_2:+1978234 Msa0583430:CDS
AGCCCACCGAACAGGAGGAC+CGG 0.567603 4_2:-1978822 None:intergenic
GGTTCTTTATCATAAATGGT+CGG 0.570849 4_2:-1980825 None:intergenic
CTCAACTGACTATTCCTCCT+CGG 0.571473 4_2:-1976258 None:intergenic
ATGCTTTCAGGCCACCTCAC+CGG 0.571571 4_2:-1976372 None:intergenic
TGAGAGTTAGAGCTTCCATA+AGG 0.571739 4_2:-1980889 None:intergenic
GTGATTCAATGCTGGCCACA+TGG 0.572073 4_2:-1980045 None:intergenic
GGACATGAATGCATTATATG+GGG 0.573009 4_2:+1979392 Msa0583430:CDS
GTGGATAGATTACTTCGCCC+TGG 0.574350 4_2:+1978782 Msa0583430:CDS
CTAAATAACACCGTTGTCAG+TGG 0.574408 4_2:-1980914 None:intergenic
ACCGGAACCCGATACCCATT+AGG 0.575177 4_2:-1976354 None:intergenic
GGAAACATCGTACCACCACC+GGG 0.575600 4_2:-1978252 None:intergenic
ACCCGATACCCATTAGGCGG+TGG 0.581597 4_2:-1976348 None:intergenic
CCTTAAAATCTGATCCTGTG+TGG 0.585740 4_2:+1979427 Msa0583430:CDS
ATGGTCAGATCTCCAGGCTG+TGG 0.585744 4_2:+1978859 Msa0583430:CDS
GAGAGGGGACCTCGAAGGTG+CGG 0.587301 4_2:-1979253 None:intergenic
TCAAAGATCGCATCAAGAGT+TGG 0.587538 4_2:-1979480 None:intergenic
TGTTGTGGATCAACGGTGGA+CGG 0.588409 4_2:-1976135 None:intergenic
TGCACTTGACATGGGATGTG+GGG 0.590574 4_2:+1978344 Msa0583430:CDS
GGCTTGTCCTGCAAGTGAGG+TGG 0.591375 4_2:+1976215 Msa0583430:CDS
GTGGCCTGAAAGCATGCATA+AGG 0.591970 4_2:+1976380 Msa0583430:CDS
CGGTGGACGGAGCCAGCACA+CGG 0.592440 4_2:-1976122 None:intergenic
CTGACACTAAGCTGTGGGTA+CGG 0.592971 4_2:+1979304 Msa0583430:CDS
AGTAGTACGTCGTCTATCAA+AGG 0.594144 4_2:+1979183 Msa0583430:CDS
CTTAAAATCTGATCCTGTGT+GGG 0.595912 4_2:+1979428 Msa0583430:CDS
CACACGGCGGCGACCAAGGG+TGG 0.596889 4_2:-1976106 None:intergenic
TTCCTCCTCGGATCCTCACA+CGG 0.597488 4_2:-1976246 None:intergenic
ACAACAGCGCAACCGTCTTG+TGG 0.602780 4_2:+1976152 Msa0583430:CDS
GAATTTCTCATGCGGTGAGG+TGG 0.604415 4_2:+1980799 Msa0583430:CDS
ATGGGTATCGGGTTCCGGTG+AGG 0.605394 4_2:+1976358 Msa0583430:CDS
AACTCTCATTCCACTGACAA+CGG 0.607058 4_2:+1980904 Msa0583430:exon
CTGAGGACTGCACTTGACAT+GGG 0.607454 4_2:+1978336 Msa0583430:CDS
CCATAAATGGAGGTGTTCTG+AGG 0.608336 4_2:+1978319 Msa0583430:CDS
GTTGCGCTGTTGTGGATCAA+CGG 0.608776 4_2:-1976142 None:intergenic
TTACGAAGTGTTGTTGTCGG+TGG 0.610473 4_2:-1975755 None:intergenic
TTCAGGAGAGGGGACCTCGA+AGG 0.611046 4_2:-1979258 None:intergenic
ATATGCCGTGTGAGGATCCG+AGG 0.611947 4_2:+1976241 Msa0583430:CDS
AACAAGATTGCTGACAGGAA+AGG 0.612391 4_2:+1978186 Msa0583430:CDS
TGAGGCTTGTCCTGCAAGTG+AGG 0.612584 4_2:+1976212 Msa0583430:CDS
CGCGAATTTCTCATGCGGTG+AGG 0.618831 4_2:+1980796 Msa0583430:CDS
CCCACAACAAGATTGCTGAC+AGG 0.621138 4_2:+1978181 Msa0583430:CDS
TTGTTTGTAAGATTCTGTGA+TGG 0.622606 4_2:-1975875 None:intergenic
GGTGGTACGATGTTTCCAGA+TGG 0.623372 4_2:+1978258 Msa0583430:CDS
GGATCAGATCATAAGTTCGA+GGG 0.623475 4_2:-1980024 None:intergenic
TGGATCAGATCATAAGTTCG+AGG 0.626818 4_2:-1980025 None:intergenic
GAGACATTGTCCTTTGCCGG+AGG 0.627674 4_2:+1976305 Msa0583430:CDS
GACATGAATGCATTATATGG+GGG 0.628349 4_2:+1979393 Msa0583430:CDS
ATGAGGCTGACACTAAGCTG+TGG 0.628841 4_2:+1979298 Msa0583430:CDS
TGAATTATGTGATGATTCTG+GGG 0.629160 4_2:+1978985 Msa0583430:CDS
GAGATGACTAGATATCCACC+AGG 0.630917 4_2:-1978800 None:intergenic
ATCTCTTGGAGCAAAAGACA+TGG 0.632314 4_2:-1978505 None:intergenic
CAATTCCCAAGTGGCCAGAG+AGG 0.633346 4_2:+1979223 Msa0583430:CDS
ATTCACTAAATATAAAGTTG+GGG 0.633734 4_2:+1979346 Msa0583430:CDS
GTGTTGGTGCGTTTCCATGG+TGG 0.634028 4_2:-1976006 None:intergenic
TGTTTAGCCCACCGAACAGG+AGG 0.634614 4_2:-1978827 None:intergenic
AAGATCGCATCAAGAGTTGG+TGG 0.642391 4_2:-1979477 None:intergenic
ACACTAAGCTGTGGGTACGG+AGG 0.649184 4_2:+1979307 Msa0583430:CDS
GATAAAGAACCTGACTCACA+CGG 0.649646 4_2:+1980837 Msa0583430:CDS
CAGGGGTGGATGAAACGAGA+AGG 0.650186 4_2:+1978213 Msa0583430:CDS
TGAGGCTGACACTAAGCTGT+GGG 0.651463 4_2:+1979299 Msa0583430:CDS
ACTACATTCATCACCCACAC+AGG 0.651770 4_2:-1979441 None:intergenic
CAATACATTCCCATAAATGG+AGG 0.655075 4_2:+1978309 Msa0583430:CDS
GAGACGCCATTGACGTGTGT+TGG 0.655246 4_2:-1976022 None:intergenic
CTTACCACAACAGTTCCCTC+CGG 0.657553 4_2:-1980744 None:intergenic
ACAGCGCAACCGTCTTGTGG+TGG 0.669047 4_2:+1976155 Msa0583430:CDS
GATAGATTACTTCGCCCTGG+TGG 0.672552 4_2:+1978785 Msa0583430:CDS
CCTCAATAGCCACCACAAGA+CGG 0.672916 4_2:-1976164 None:intergenic
AGTTATCTGTTCATAACACA+AGG 0.678842 4_2:-1978888 None:intergenic
GGATGTGAGAATAATGTGAG+AGG 0.679136 4_2:-1975718 None:intergenic
TTGTGGTGGCTATTGAGGAA+GGG 0.680797 4_2:+1976169 Msa0583430:CDS
AACTTATGATCTGATCCATG+TGG 0.684133 4_2:+1980030 Msa0583430:CDS
GTCACTCAAATTTCCCACCA+TGG 0.691297 4_2:+1975992 Msa0583430:CDS
GGTGGATCATATGCCGTGTG+AGG 0.693101 4_2:+1976233 Msa0583430:CDS
TGCCGTGTGAGGATCCGAGG+AGG 0.694563 4_2:+1976244 Msa0583430:CDS
AGCCTCATATACATCAACAC+CGG 0.699420 4_2:-1979283 None:intergenic
GCTGACAGGAAAGGTCACCA+GGG 0.706997 4_2:+1978195 Msa0583430:CDS
CTGACAGGAAAGGTCACCAG+GGG 0.710989 4_2:+1978196 Msa0583430:CDS
GGAACCCGATACCCATTAGG+CGG 0.712447 4_2:-1976351 None:intergenic
GCGCTGTTGTGGATCAACGG+TGG 0.717072 4_2:-1976139 None:intergenic
CAACACTTTATATTCCCCGG+TGG 0.727815 4_2:+1978237 Msa0583430:CDS
CTATTGGAACAATTCCCAAG+TGG 0.728324 4_2:+1979214 Msa0583430:CDS
AGTAGCGCGAATTTCTCATG+CGG 0.745124 4_2:+1980791 Msa0583430:CDS
AGATGACTAGATATCCACCA+GGG 0.765962 4_2:-1978799 None:intergenic
GAAACATCGTACCACCACCG+GGG 0.777476 4_2:-1978251 None:intergenic
TGGACGGAGCCAGCACACGG+CGG 0.777606 4_2:-1976119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGATATTAAATTGATAA+TGG + chr4_2:1977192-1977211 Msa0583430:intron 10.0%
!!! CTTTTCTTTTTTTTTTTTTT+TGG + chr4_2:1979756-1979775 Msa0583430:intron 10.0%
!!! TGTATTTTTAATTTTTAATC+TGG + chr4_2:1979859-1979878 Msa0583430:intron 10.0%
!! CTTTATAAATGTAAAAAATA+TGG + chr4_2:1980455-1980474 Msa0583430:intron 10.0%
!!! ATTGAAATTGATTTCAAAAT+CGG - chr4_2:1975926-1975945 None:intergenic 15.0%
!! ACAAATTAGTAGTATTAATT+AGG + chr4_2:1977819-1977838 Msa0583430:intron 15.0%
!! CAAATTAGTAGTATTAATTA+GGG + chr4_2:1977820-1977839 Msa0583430:intron 15.0%
!! AAATTAGTAGTATTAATTAG+GGG + chr4_2:1977821-1977840 Msa0583430:intron 15.0%
!! AATTCACTAAATATAAAGTT+GGG + chr4_2:1979345-1979364 Msa0583430:CDS 15.0%
!!! TGATTTTAAAATAAGATATG+TGG + chr4_2:1979661-1979680 Msa0583430:intron 15.0%
!! TTCATATAAAGAAAACATTA+AGG + chr4_2:1981017-1981036 Msa0583430:three_prime_UTR 15.0%
!! ATCTGATTAATAAGCTATTT+GGG - chr4_2:1975951-1975970 None:intergenic 20.0%
!! AACAGTATTTAAAGATGATA+TGG - chr4_2:1976666-1976685 None:intergenic 20.0%
!!! AAATACTGTTTATTTGAGAT+CGG + chr4_2:1976676-1976695 Msa0583430:intron 20.0%
!! AAACTATAAGAGAAACTATT+AGG + chr4_2:1976972-1976991 Msa0583430:intron 20.0%
!! AAATTTAAAAACTGTTGTGT+AGG + chr4_2:1977117-1977136 Msa0583430:intron 20.0%
!! AATTTAAAAACTGTTGTGTA+GGG + chr4_2:1977118-1977137 Msa0583430:intron 20.0%
!!! AATGAAAATTTTAATCTCCA+TGG - chr4_2:1977175-1977194 None:intergenic 20.0%
!! GAAAATACCTCTAAATTTAA+AGG - chr4_2:1977348-1977367 None:intergenic 20.0%
!!! TGGATTTTTTTTGTTTAGAA+TGG + chr4_2:1977605-1977624 Msa0583430:intron 20.0%
!!! GGATTTTTTTTGTTTAGAAT+GGG + chr4_2:1977606-1977625 Msa0583430:intron 20.0%
!! TTTATTACACATACAAACAA+AGG - chr4_2:1977778-1977797 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr4_2:1977903-1977922 Msa0583430:intron 20.0%
!! ATAAGGTTTAAAAAGTAAAG+AGG - chr4_2:1978383-1978402 None:intergenic 20.0%
!! GAATTCACTAAATATAAAGT+TGG + chr4_2:1979344-1979363 Msa0583430:CDS 20.0%
!! ATTCACTAAATATAAAGTTG+GGG + chr4_2:1979346-1979365 Msa0583430:CDS 20.0%
!!! ATTATTTTCCAGAAACATTA+GGG + chr4_2:1979574-1979593 Msa0583430:intron 20.0%
!!! TTTTAAAATAAGATATGTGG+TGG + chr4_2:1979664-1979683 Msa0583430:intron 20.0%
!!! TTTAATTTTTAATCTGGATG+CGG + chr4_2:1979865-1979884 Msa0583430:intron 20.0%
!!! TTAGTAGAGTTTTTCAATTT+AGG - chr4_2:1980235-1980254 None:intergenic 20.0%
!! TGAAATTCTACAATATTTCT+TGG + chr4_2:1980328-1980347 Msa0583430:intron 20.0%
!!! ATGTAATATTGTTGATTTGA+TGG + chr4_2:1980698-1980717 Msa0583430:CDS 20.0%
!! ATAAAGAAAACATTAAGGTT+AGG + chr4_2:1981022-1981041 Msa0583430:three_prime_UTR 20.0%
!!! TATATTTTTTCGAAGTTTCA+TGG + chr4_2:1981104-1981123 Msa0583430:three_prime_UTR 20.0%
!! ATTCAACATTACTTATTCAT+TGG + chr4_2:1981151-1981170 Msa0583430:three_prime_UTR 20.0%
! TAGGAAAAAAAATGTGTAAC+TGG - chr4_2:1975839-1975858 None:intergenic 25.0%
! TTTGATTAAGGGATTGAAAA+GGG - chr4_2:1975901-1975920 None:intergenic 25.0%
!!! TTTTGATTAAGGGATTGAAA+AGG - chr4_2:1975902-1975921 None:intergenic 25.0%
!!! CAAAATCGGTTTTTGATTAA+GGG - chr4_2:1975912-1975931 None:intergenic 25.0%
!!! TCAAAATCGGTTTTTGATTA+AGG - chr4_2:1975913-1975932 None:intergenic 25.0%
! GATCTGATTAATAAGCTATT+TGG - chr4_2:1975952-1975971 None:intergenic 25.0%
! TAGAGAGATGAATTACTATA+GGG + chr4_2:1976281-1976300 Msa0583430:CDS 25.0%
! TAGAAATTACAACATTAGAG+AGG + chr4_2:1976799-1976818 Msa0583430:intron 25.0%
! AGAAATTACAACATTAGAGA+GGG + chr4_2:1976800-1976819 Msa0583430:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr4_2:1976968-1976987 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG + chr4_2:1976997-1977016 Msa0583430:intron 25.0%
! ATTTAAAAACTGTTGTGTAG+GGG + chr4_2:1977119-1977138 Msa0583430:intron 25.0%
! TAACCAATTATAAAATGCCA+TGG + chr4_2:1977155-1977174 Msa0583430:intron 25.0%
! AATACCATTCTCAAAACATA+AGG + chr4_2:1977239-1977258 Msa0583430:intron 25.0%
! ACAAGTACCTTTAAATTTAG+AGG + chr4_2:1977338-1977357 Msa0583430:intron 25.0%
!!! TAAATTTAGAGGTATTTTCC+AGG + chr4_2:1977349-1977368 Msa0583430:intron 25.0%
!! TTGTCTTATTGTTGCTATTA+TGG + chr4_2:1977512-1977531 Msa0583430:intron 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr4_2:1977695-1977714 None:intergenic 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr4_2:1977696-1977715 None:intergenic 25.0%
! CATTTCTTAAGAAAAGTTGT+CGG + chr4_2:1977708-1977727 Msa0583430:intron 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr4_2:1977831-1977850 Msa0583430:intron 25.0%
!!! ATGCATCTAGTATTTTGAAA+AGG + chr4_2:1977867-1977886 Msa0583430:intron 25.0%
! TTGAAAAGGAGTTTACATTT+AGG + chr4_2:1977881-1977900 Msa0583430:intron 25.0%
! TGAAAAGGAGTTTACATTTA+GGG + chr4_2:1977882-1977901 Msa0583430:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr4_2:1977902-1977921 Msa0583430:intron 25.0%
! CTACAAATTGAATCCTAATT+TGG - chr4_2:1977998-1978017 None:intergenic 25.0%
! GTGCAATGAAATTAATATAG+AGG + chr4_2:1978017-1978036 Msa0583430:intron 25.0%
! GAAATTAATATAGAGGTGAT+AGG + chr4_2:1978024-1978043 Msa0583430:intron 25.0%
!! TAATATGTTTTGTGCAGATA+TGG + chr4_2:1978145-1978164 Msa0583430:intron 25.0%
! TGAAGTAAAATGGAGTAAAA+TGG - chr4_2:1978441-1978460 None:intergenic 25.0%
!! ATTTTACTCCATTTTACTTC+AGG + chr4_2:1978440-1978459 Msa0583430:intron 25.0%
!! CATAGTAAATTTTCTGCATA+AGG - chr4_2:1978739-1978758 None:intergenic 25.0%
! TTGAATTATGTGATGATTCT+GGG + chr4_2:1978984-1979003 Msa0583430:CDS 25.0%
!! GATTATTTTCCAGAAACATT+AGG + chr4_2:1979573-1979592 Msa0583430:intron 25.0%
! TTTGCCAAGTATTAAGATAT+AGG - chr4_2:1979614-1979633 None:intergenic 25.0%
!!! ATTTTAAAATCATGTCTGCA+AGG - chr4_2:1979653-1979672 None:intergenic 25.0%
! ATATATATCATGTGAATGTG+TGG + chr4_2:1979791-1979810 Msa0583430:intron 25.0%
! TATATCCATTTGTATCGTAA+TGG + chr4_2:1979936-1979955 Msa0583430:intron 25.0%
!! TTTTATAAGTGATTCAATGC+TGG - chr4_2:1980056-1980075 None:intergenic 25.0%
! AAACATCAATGATTAAAGCA+AGG - chr4_2:1980640-1980659 None:intergenic 25.0%
! AATGAAATTGTGAAGAAATC+AGG - chr4_2:1980674-1980693 None:intergenic 25.0%
!!! TAATATTGTTGATTTGATGG+TGG + chr4_2:1980701-1980720 Msa0583430:CDS 25.0%
AATTCTTATGCTTCATGATC+TGG - chr4_2:1975630-1975649 None:intergenic 30.0%
ATCAAAGATCTTATGCTTCA+AGG - chr4_2:1975663-1975682 None:intergenic 30.0%
TGGATATAGAATGTAGTGTT+AGG - chr4_2:1975858-1975877 None:intergenic 30.0%
TTGTTTGTAAGATTCTGTGA+TGG - chr4_2:1975878-1975897 None:intergenic 30.0%
GAGAAAGAGTAATGAGAAAA+AGG - chr4_2:1976067-1976086 None:intergenic 30.0%
GTAGAGAGATGAATTACTAT+AGG + chr4_2:1976280-1976299 Msa0583430:CDS 30.0%
! TTACCTGCATCAATTGTTTT+TGG + chr4_2:1976601-1976620 Msa0583430:intron 30.0%
TTACCAAAAACAATTGATGC+AGG - chr4_2:1976607-1976626 None:intergenic 30.0%
AAAATAGACTTAGGTGGTTT+GGG + chr4_2:1976858-1976877 Msa0583430:intron 30.0%
! TCTCCATGGCATTTTATAAT+TGG - chr4_2:1977161-1977180 None:intergenic 30.0%
!!! GTATCCTTATGTTTTGAGAA+TGG - chr4_2:1977246-1977265 None:intergenic 30.0%
ATAAGATTGATCTTCAATCC+TGG - chr4_2:1977370-1977389 None:intergenic 30.0%
TATGTTGCAGACTTCATATA+TGG + chr4_2:1977473-1977492 Msa0583430:intron 30.0%
! TATTGTTGCTATTATGGTTG+TGG + chr4_2:1977518-1977537 Msa0583430:intron 30.0%
!! TATGTTTGGGTTGTATTTAC+TGG + chr4_2:1977638-1977657 Msa0583430:intron 30.0%
AAATGTGAAAAAAGCAAAGG+GGG - chr4_2:1977693-1977712 None:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+GGG - chr4_2:1977694-1977713 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr4_2:1977769-1977788 None:intergenic 30.0%
TCAAATGGGTGTTTAGATAT+AGG + chr4_2:1977917-1977936 Msa0583430:intron 30.0%
CAAATGGGTGTTTAGATATA+GGG + chr4_2:1977918-1977937 Msa0583430:intron 30.0%
AGTCAATACATTCCCATAAA+TGG + chr4_2:1978306-1978325 Msa0583430:CDS 30.0%
CAGTGATCAATTCTAGTATA+AGG - chr4_2:1978400-1978419 None:intergenic 30.0%
TGCAACTTATTTCATTGAAG+TGG + chr4_2:1978763-1978782 Msa0583430:CDS 30.0%
AGTTATCTGTTCATAACACA+AGG - chr4_2:1978891-1978910 None:intergenic 30.0%
CTTGAATTATGTGATGATTC+TGG + chr4_2:1978983-1979002 Msa0583430:CDS 30.0%
TGAATTATGTGATGATTCTG+GGG + chr4_2:1978985-1979004 Msa0583430:CDS 30.0%
AAATTTACCAAGCTTGACTT+AGG - chr4_2:1979012-1979031 None:intergenic 30.0%
AGAGATGCAAAGATAATCAA+AGG - chr4_2:1979035-1979054 None:intergenic 30.0%
! AACTAAGATGATCATTTTGC+AGG + chr4_2:1979136-1979155 Msa0583430:intron 30.0%
ATCAAAGGAGATTATGCTAT+TGG + chr4_2:1979198-1979217 Msa0583430:CDS 30.0%
ATGGACATGAATGCATTATA+TGG + chr4_2:1979390-1979409 Msa0583430:CDS 30.0%
TGGACATGAATGCATTATAT+GGG + chr4_2:1979391-1979410 Msa0583430:CDS 30.0%
! TTATTGGTGTCTATCATGAT+TGG + chr4_2:1979511-1979530 Msa0583430:CDS 30.0%
TTCATGCATCTTCTCTTAAA+GGG + chr4_2:1979551-1979570 Msa0583430:intron 30.0%
ATGGCCTATATCTTAATACT+TGG + chr4_2:1979607-1979626 Msa0583430:intron 30.0%
! AGTTGCTTTCATGATACTTA+CGG + chr4_2:1979723-1979742 Msa0583430:intron 30.0%
TACATCCATTACGATACAAA+TGG - chr4_2:1979944-1979963 None:intergenic 30.0%
!!! TCGTAATGGATGTATTTTCT+TGG + chr4_2:1979950-1979969 Msa0583430:intron 30.0%
AATCGATAGAATAACAGCTT+AGG - chr4_2:1980149-1980168 None:intergenic 30.0%
CAAATTGTCGAGATCTATAA+AGG - chr4_2:1980204-1980223 None:intergenic 30.0%
!! TATGGTTTACTTTTGCTATG+AGG + chr4_2:1980473-1980492 Msa0583430:intron 30.0%
TTTGACATGAATCTAATAGG+AGG - chr4_2:1980567-1980586 None:intergenic 30.0%
! TGGAAATTGATCGAATTTTG+CGG + chr4_2:1980721-1980740 Msa0583430:CDS 30.0%
GGTTCTTTATCATAAATGGT+CGG - chr4_2:1980828-1980847 None:intergenic 30.0%
GTCAGGTTCTTTATCATAAA+TGG - chr4_2:1980832-1980851 None:intergenic 30.0%
AAATTCCCTTTATTGTTCAG+TGG + chr4_2:1980940-1980959 Msa0583430:three_prime_UTR 30.0%
! TGCACAAGTATTCCAATTTT+TGG - chr4_2:1981052-1981071 None:intergenic 30.0%
!! AATACTTGTGCAGTTTTATG+TGG + chr4_2:1981060-1981079 Msa0583430:three_prime_UTR 30.0%
!! TTGTTACGAAGTGTTGTTGT+CGG - chr4_2:1975761-1975780 None:intergenic 35.0%
! AATTTGAGTGACGCATTTTG+AGG - chr4_2:1975984-1976003 None:intergenic 35.0%
AGAAAAAGGCAATGGAAATG+AGG - chr4_2:1976053-1976072 None:intergenic 35.0%
GAGTAATGAGAAAAAGGCAA+TGG - chr4_2:1976061-1976080 None:intergenic 35.0%
ATTGAGGAAGGGATGTTAAA+TGG + chr4_2:1976180-1976199 Msa0583430:CDS 35.0%
TTGAGGAAGGGATGTTAAAT+GGG + chr4_2:1976181-1976200 Msa0583430:CDS 35.0%
!! GTTAAATGGGAAGAGTATTG+AGG + chr4_2:1976194-1976213 Msa0583430:CDS 35.0%
!!! TAAGGTGTGGTGTAGTTTTT+TGG + chr4_2:1976398-1976417 Msa0583430:intron 35.0%
!!! GGTGTAGTTTTTTGGAAAGT+TGG + chr4_2:1976406-1976425 Msa0583430:intron 35.0%
! CATGTACTTAAAAGCGTGTT+TGG + chr4_2:1976495-1976514 Msa0583430:intron 35.0%
!! CGTGTGGTTTTTCAAATCAA+GGG - chr4_2:1976580-1976599 None:intergenic 35.0%
!! ACGTGTGGTTTTTCAAATCA+AGG - chr4_2:1976581-1976600 None:intergenic 35.0%
!! TCAATAAAGTGTTGCAGTAG+CGG + chr4_2:1976709-1976728 Msa0583430:intron 35.0%
GATGTATGGTAAGACCATTT+GGG + chr4_2:1976769-1976788 Msa0583430:intron 35.0%
ATTTCTAATTCCCTCCCAAA+TGG - chr4_2:1976786-1976805 None:intergenic 35.0%
!! AGATGGTGGAAAATAGACTT+AGG + chr4_2:1976849-1976868 Msa0583430:intron 35.0%
GAAAATAGACTTAGGTGGTT+TGG + chr4_2:1976857-1976876 Msa0583430:intron 35.0%
! TAATGAGTTGGATGCAAATG+TGG + chr4_2:1977009-1977028 Msa0583430:intron 35.0%
TGGTAGACATGATGCATTAT+TGG + chr4_2:1977432-1977451 Msa0583430:intron 35.0%
! GGAGTTATTGTGTTTTGTGA+AGG + chr4_2:1977563-1977582 Msa0583430:intron 35.0%
! TTGTGTTTTGTGAAGGACTT+AGG + chr4_2:1977570-1977589 Msa0583430:intron 35.0%
AATGTGAAAAAAGCAAAGGG+GGG - chr4_2:1977692-1977711 None:intergenic 35.0%
AGTGTGATGAAATTGAGATG+AGG + chr4_2:1977959-1977978 Msa0583430:intron 35.0%
TGAGAATGTGAAGCCAAATT+AGG + chr4_2:1977982-1978001 Msa0583430:intron 35.0%
ATATATTGTTCTGCTCCATC+TGG - chr4_2:1978276-1978295 None:intergenic 35.0%
CAATACATTCCCATAAATGG+AGG + chr4_2:1978309-1978328 Msa0583430:CDS 35.0%
ACTAGCAACCTGAAGTAAAA+TGG - chr4_2:1978451-1978470 None:intergenic 35.0%
!!! TTACTTCAGGTTGCTAGTTT+TGG + chr4_2:1978453-1978472 Msa0583430:intron 35.0%
TGCGATTTATGTGAATCTCT+TGG - chr4_2:1978522-1978541 None:intergenic 35.0%
ATACAATTTGCCTTGGAAAG+AGG + chr4_2:1978543-1978562 Msa0583430:CDS 35.0%
TCAAATCCAAAAGCAGGAAA+TGG - chr4_2:1978609-1978628 None:intergenic 35.0%
!! TTGACTTGGTTCATTGTTCT+CGG + chr4_2:1978625-1978644 Msa0583430:CDS 35.0%
AACTTACTGTAGGCTGTAAA+CGG - chr4_2:1978660-1978679 None:intergenic 35.0%
TACATGAAAACACTGCAATC+TGG + chr4_2:1978912-1978931 Msa0583430:CDS 35.0%
CTTCCTAATGGAAATGAGTT+TGG + chr4_2:1978959-1978978 Msa0583430:CDS 35.0%
AGACCAAACTCATTTCCATT+AGG - chr4_2:1978965-1978984 None:intergenic 35.0%
GGACATGAATGCATTATATG+GGG + chr4_2:1979392-1979411 Msa0583430:CDS 35.0%
GACATGAATGCATTATATGG+GGG + chr4_2:1979393-1979412 Msa0583430:CDS 35.0%
CTTAAAATCTGATCCTGTGT+GGG + chr4_2:1979428-1979447 Msa0583430:CDS 35.0%
ATCTTTGACAGAGGACTTAT+TGG + chr4_2:1979495-1979514 Msa0583430:CDS 35.0%
GTTCATGCATCTTCTCTTAA+AGG + chr4_2:1979550-1979569 Msa0583430:intron 35.0%
ACATTAGGGTTGTGATCTTA+TGG + chr4_2:1979588-1979607 Msa0583430:intron 35.0%
ATCATGTCTGCAAGGAAAAA+TGG - chr4_2:1979645-1979664 None:intergenic 35.0%
! TTTTTAATCTGGATGCGGTT+CGG + chr4_2:1979870-1979889 Msa0583430:intron 35.0%
CTTGGAGAATCTAAGTTGTA+TGG + chr4_2:1979968-1979987 Msa0583430:intron 35.0%
AACTTATGATCTGATCCATG+TGG + chr4_2:1980030-1980049 Msa0583430:CDS 35.0%
CTTATAAAAGATCCAGCTAC+TGG + chr4_2:1980067-1980086 Msa0583430:CDS 35.0%
ATCCAGCTACTGGTAAAAAA+AGG + chr4_2:1980077-1980096 Msa0583430:CDS 35.0%
!!! TACCTTTTTTTACCAGTAGC+TGG - chr4_2:1980082-1980101 None:intergenic 35.0%
TAATCTGATGTCACATCTCT+AGG + chr4_2:1980120-1980139 Msa0583430:intron 35.0%
! GCAAGGTATTTGATGTTCAA+TGG + chr4_2:1980538-1980557 Msa0583430:intron 35.0%
CGGTTTGACATGAATCTAAT+AGG - chr4_2:1980570-1980589 None:intergenic 35.0%
! ATTGTGAAGAAATCAGGTTG+AGG - chr4_2:1980668-1980687 None:intergenic 35.0%
! GCTACTTTGTCAATTACTTC+GGG - chr4_2:1980777-1980796 None:intergenic 35.0%
! CGCTACTTTGTCAATTACTT+CGG - chr4_2:1980778-1980797 None:intergenic 35.0%
!!! TAGTTTTGACCAAGACCTTA+TGG + chr4_2:1980874-1980893 Msa0583430:CDS 35.0%
AGGTTAGGATTGCCAAAAAT+TGG + chr4_2:1981037-1981056 Msa0583430:three_prime_UTR 35.0%
! TGGAAAAAAGAGTTCTGATC+CGG + chr4_2:1981171-1981190 Msa0583430:three_prime_UTR 35.0%
GGATGTGAGAATAATGTGAG+AGG - chr4_2:1975721-1975740 None:intergenic 40.0%
!!! TCGGTGGTGGTTTTGTTTTT+TGG - chr4_2:1975742-1975761 None:intergenic 40.0%
AATTGATGCAGGTAAACGTG+TGG - chr4_2:1976596-1976615 None:intergenic 40.0%
GGAGAATAAAGTAAGCGTAG+CGG + chr4_2:1976730-1976749 Msa0583430:intron 40.0%
ATGATGTTGCCTTGGATGTA+TGG + chr4_2:1976755-1976774 Msa0583430:intron 40.0%
! ATGGTCTTACCATACATCCA+AGG - chr4_2:1976767-1976786 None:intergenic 40.0%
GGATGTATGGTAAGACCATT+TGG + chr4_2:1976768-1976787 Msa0583430:intron 40.0%
TATGGTAAGACCATTTGGGA+GGG + chr4_2:1976773-1976792 Msa0583430:intron 40.0%
TACAACATTAGAGAGGGAGT+TGG + chr4_2:1976806-1976825 Msa0583430:intron 40.0%
AGCACCTTGAGTAGAAAAGA+TGG + chr4_2:1976832-1976851 Msa0583430:intron 40.0%
ACCTTGAGTAGAAAAGATGG+TGG + chr4_2:1976835-1976854 Msa0583430:intron 40.0%
! TCCACCATCTTTTCTACTCA+AGG - chr4_2:1976839-1976858 None:intergenic 40.0%
TGGTGGAAAATAGACTTAGG+TGG + chr4_2:1976852-1976871 Msa0583430:intron 40.0%
GACCTGTAGATTGTGTAGTA+AGG + chr4_2:1976894-1976913 Msa0583430:intron 40.0%
CTCCTTACTACACAATCTAC+AGG - chr4_2:1976899-1976918 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr4_2:1976910-1976929 Msa0583430:intron 40.0%
GAGGATAGTCAAATCACTAG+AGG + chr4_2:1976932-1976951 Msa0583430:intron 40.0%
AGTCAAATCACTAGAGGTAG+AGG + chr4_2:1976938-1976957 Msa0583430:intron 40.0%
CGGCTACATGGATCAAATTA+CGG - chr4_2:1977054-1977073 None:intergenic 40.0%
TGAGGGCAAGATAGTGAAAA+TGG + chr4_2:1977412-1977431 Msa0583430:intron 40.0%
CATGATGCATTATTGGACAC+TGG + chr4_2:1977439-1977458 Msa0583430:intron 40.0%
! TGGTGCCTTGTTATGTAACT+TGG + chr4_2:1977538-1977557 Msa0583430:intron 40.0%
! TGCCTTGTTATGTAACTTGG+AGG + chr4_2:1977541-1977560 Msa0583430:intron 40.0%
! GCCTTGTTATGTAACTTGGA+GGG + chr4_2:1977542-1977561 Msa0583430:intron 40.0%
TCCCTCCAAGTTACATAACA+AGG - chr4_2:1977546-1977565 None:intergenic 40.0%
!!! GACTTAGGAGCTTGTTTTTG+TGG + chr4_2:1977585-1977604 Msa0583430:intron 40.0%
ATGGGATAGTGCTGTATGTT+TGG + chr4_2:1977624-1977643 Msa0583430:intron 40.0%
TGGGATAGTGCTGTATGTTT+GGG + chr4_2:1977625-1977644 Msa0583430:intron 40.0%
TGGGTGTTTAGATATAGGGA+CGG + chr4_2:1977922-1977941 Msa0583430:intron 40.0%
TGTTTAGATATAGGGACGGA+GGG + chr4_2:1977926-1977945 Msa0583430:intron 40.0%
ATATAGAGGTGATAGGCTGA+TGG + chr4_2:1978031-1978050 Msa0583430:intron 40.0%
! TCGATTGATTCATCTGCTCT+TGG + chr4_2:1978074-1978093 Msa0583430:intron 40.0%
AACAAGATTGCTGACAGGAA+AGG + chr4_2:1978186-1978205 Msa0583430:CDS 40.0%
GGTCAACACTTTATATTCCC+CGG + chr4_2:1978234-1978253 Msa0583430:CDS 40.0%
CTCAGAACACCTCCATTTAT+GGG - chr4_2:1978321-1978340 None:intergenic 40.0%
ATCTCTTGGAGCAAAAGACA+TGG - chr4_2:1978508-1978527 None:intergenic 40.0%
ATCGCAGATACAATTTGCCT+TGG + chr4_2:1978536-1978555 Msa0583430:CDS 40.0%
! AGACTTCCATTTCCTGCTTT+TGG + chr4_2:1978600-1978619 Msa0583430:CDS 40.0%
!! TCCTGCTTTTGGATTTGACT+TGG + chr4_2:1978611-1978630 Msa0583430:CDS 40.0%
ACCAAGTCAAATCCAAAAGC+AGG - chr4_2:1978615-1978634 None:intergenic 40.0%
TGCAATGCAGAACTTACTGT+AGG - chr4_2:1978670-1978689 None:intergenic 40.0%
AGATGACTAGATATCCACCA+GGG - chr4_2:1978802-1978821 None:intergenic 40.0%
GGGCTAAACAGGAAAAAGAA+TGG + chr4_2:1978840-1978859 Msa0583430:CDS 40.0%
AAAAGAATGGTCAGATCTCC+AGG + chr4_2:1978853-1978872 Msa0583430:CDS 40.0%
AGTAGTACGTCGTCTATCAA+AGG + chr4_2:1979183-1979202 Msa0583430:CDS 40.0%
CTATTGGAACAATTCCCAAG+TGG + chr4_2:1979214-1979233 Msa0583430:CDS 40.0%
!!! ATACATCAACACCGGTTTTC+AGG - chr4_2:1979278-1979297 None:intergenic 40.0%
!! AACCGGTGTTGATGTATATG+AGG + chr4_2:1979281-1979300 Msa0583430:CDS 40.0%
AGCCTCATATACATCAACAC+CGG - chr4_2:1979286-1979305 None:intergenic 40.0%
TCCATCAATACGCAACGTTA+TGG + chr4_2:1979371-1979390 Msa0583430:CDS 40.0%
TCCATAACGTTGCGTATTGA+TGG - chr4_2:1979375-1979394 None:intergenic 40.0%
! CCACACAGGATCAGATTTTA+AGG - chr4_2:1979430-1979449 None:intergenic 40.0%
CCTTAAAATCTGATCCTGTG+TGG + chr4_2:1979427-1979446 Msa0583430:CDS 40.0%
TCAAAGATCGCATCAAGAGT+TGG - chr4_2:1979483-1979502 None:intergenic 40.0%
GATCACAACCCTAATGTTTC+TGG - chr4_2:1979585-1979604 None:intergenic 40.0%
!!! AGTTGTATGGTTTTGTTCCC+AGG + chr4_2:1979981-1980000 Msa0583430:intron 40.0%
GTTGAAAAAGGTTCACACCT+GGG - chr4_2:1980001-1980020 None:intergenic 40.0%
TGTTGAAAAAGGTTCACACC+TGG - chr4_2:1980002-1980021 None:intergenic 40.0%
! GTTCGAGGGTATGTTGAAAA+AGG - chr4_2:1980013-1980032 None:intergenic 40.0%
GGATCAGATCATAAGTTCGA+GGG - chr4_2:1980027-1980046 None:intergenic 40.0%
TGGATCAGATCATAAGTTCG+AGG - chr4_2:1980028-1980047 None:intergenic 40.0%
ATGTTTCAAAGAAGCAGCAC+AGG - chr4_2:1980362-1980381 None:intergenic 40.0%
GTAGAGTTTGAATCAGTGCA+AGG + chr4_2:1980521-1980540 Msa0583430:intron 40.0%
! AATTGATCGAATTTTGCGGC+CGG + chr4_2:1980725-1980744 Msa0583430:CDS 40.0%
GATAAAGAACCTGACTCACA+CGG + chr4_2:1980837-1980856 Msa0583430:CDS 40.0%
TTAGAGCTTCCATAAGGTCT+TGG - chr4_2:1980886-1980905 None:intergenic 40.0%
TGAGAGTTAGAGCTTCCATA+AGG - chr4_2:1980892-1980911 None:intergenic 40.0%
AACTCTCATTCCACTGACAA+CGG + chr4_2:1980904-1980923 Msa0583430:exon 40.0%
CTAAATAACACCGTTGTCAG+TGG - chr4_2:1980917-1980936 None:intergenic 40.0%
!! CACTGACAACGGTGTTATTT+AGG + chr4_2:1980915-1980934 Msa0583430:three_prime_UTR 40.0%
TTCCCTTTATTGTTCAGTGG+TGG + chr4_2:1980943-1980962 Msa0583430:three_prime_UTR 40.0%
CACCACCACTGAACAATAAA+GGG - chr4_2:1980948-1980967 None:intergenic 40.0%
ACACCACCACTGAACAATAA+AGG - chr4_2:1980949-1980968 None:intergenic 40.0%
!! TTACGAAGTGTTGTTGTCGG+TGG - chr4_2:1975758-1975777 None:intergenic 45.0%
!! ACGCATTTTGAGGAAGAAGG+TGG - chr4_2:1975974-1975993 None:intergenic 45.0%
!! GTGACGCATTTTGAGGAAGA+AGG - chr4_2:1975977-1975996 None:intergenic 45.0%
GTCACTCAAATTTCCCACCA+TGG + chr4_2:1975992-1976011 Msa0583430:CDS 45.0%
! GTTCTCTTTTACACCACCCT+TGG + chr4_2:1976093-1976112 Msa0583430:CDS 45.0%
TTGTGGTGGCTATTGAGGAA+GGG + chr4_2:1976169-1976188 Msa0583430:CDS 45.0%
ATATGATCCACCTCACTTGC+AGG - chr4_2:1976225-1976244 None:intergenic 45.0%
CTCAACTGACTATTCCTCCT+CGG - chr4_2:1976261-1976280 None:intergenic 45.0%
TGTTTGATTCCACCGCCTAA+TGG + chr4_2:1976339-1976358 Msa0583430:CDS 45.0%
GTTTGATTCCACCGCCTAAT+GGG + chr4_2:1976340-1976359 Msa0583430:CDS 45.0%
CACACCTTATGCATGCTTTC+AGG - chr4_2:1976387-1976406 None:intergenic 45.0%
! CTGAAAGCATGCATAAGGTG+TGG + chr4_2:1976385-1976404 Msa0583430:intron 45.0%
GTATGGTAAGACCATTTGGG+AGG + chr4_2:1976772-1976791 Msa0583430:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr4_2:1976913-1976932 Msa0583430:intron 45.0%
CTTATCCCACTAAGTGGAGT+CGG - chr4_2:1977074-1977093 None:intergenic 45.0%
ACTGAGAAGCTACTGCAATG+AGG + chr4_2:1977394-1977413 Msa0583430:intron 45.0%
CTGAGAAGCTACTGCAATGA+GGG + chr4_2:1977395-1977414 Msa0583430:intron 45.0%
GATGCATTATTGGACACTGG+TGG + chr4_2:1977442-1977461 Msa0583430:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr4_2:1977680-1977699 None:intergenic 45.0%
AGCAAAGGGGGGTTACATTA+AGG - chr4_2:1977681-1977700 None:intergenic 45.0%
GTGTTTAGATATAGGGACGG+AGG + chr4_2:1977925-1977944 Msa0583430:intron 45.0%
! CTGTCAGCAATCTTGTTGTG+GGG - chr4_2:1978183-1978202 None:intergenic 45.0%
! CCTGTCAGCAATCTTGTTGT+GGG - chr4_2:1978184-1978203 None:intergenic 45.0%
TCCTGTCAGCAATCTTGTTG+TGG - chr4_2:1978185-1978204 None:intergenic 45.0%
CAACACTTTATATTCCCCGG+TGG + chr4_2:1978237-1978256 Msa0583430:CDS 45.0%
CCTCAGAACACCTCCATTTA+TGG - chr4_2:1978322-1978341 None:intergenic 45.0%
!! CCATAAATGGAGGTGTTCTG+AGG + chr4_2:1978319-1978338 Msa0583430:CDS 45.0%
!!! CTTCAGGTTGCTAGTTTTGG+AGG + chr4_2:1978456-1978475 Msa0583430:intron 45.0%
TGCCTTGGAAAGAGGAATAC+CGG + chr4_2:1978551-1978570 Msa0583430:CDS 45.0%
CCAAGCATAGCAACAAAAGC+CGG - chr4_2:1978573-1978592 None:intergenic 45.0%
GAGATGACTAGATATCCACC+AGG - chr4_2:1978803-1978822 None:intergenic 45.0%
GGTGGATATCTAGTCATCTC+CGG + chr4_2:1978803-1978822 Msa0583430:CDS 45.0%
GCAGATTCGTGTCTTCCTAA+TGG + chr4_2:1978947-1978966 Msa0583430:CDS 45.0%
ACTACATTCATCACCCACAC+AGG - chr4_2:1979444-1979463 None:intergenic 45.0%
AAGATCGCATCAAGAGTTGG+TGG - chr4_2:1979480-1979499 None:intergenic 45.0%
CTTGATGCGATCTTTGACAG+AGG + chr4_2:1979486-1979505 Msa0583430:CDS 45.0%
AACTTACAGCAACAGCCTCT+AGG + chr4_2:1980591-1980610 Msa0583430:intron 45.0%
AGTAGCGCGAATTTCTCATG+CGG + chr4_2:1980791-1980810 Msa0583430:CDS 45.0%
TGTTGGTGCGTTTCCATGGT+GGG - chr4_2:1976008-1976027 None:intergenic 50.0%
AACGCACCAACACACGTCAA+TGG + chr4_2:1976016-1976035 Msa0583430:CDS 50.0%
TGTTGTGGATCAACGGTGGA+CGG - chr4_2:1976138-1976157 None:intergenic 50.0%
GTTGCGCTGTTGTGGATCAA+CGG - chr4_2:1976145-1976164 None:intergenic 50.0%
CCTCAATAGCCACCACAAGA+CGG - chr4_2:1976167-1976186 None:intergenic 50.0%
CTTGTGGTGGCTATTGAGGA+AGG + chr4_2:1976168-1976187 Msa0583430:CDS 50.0%
GGAGAGACATTGTCCTTTGC+CGG + chr4_2:1976302-1976321 Msa0583430:CDS 50.0%
AAACAAACCGCAGTCTCCTC+CGG - chr4_2:1976324-1976343 None:intergenic 50.0%
! TTCCACCGCCTAATGGGTAT+CGG + chr4_2:1976346-1976365 Msa0583430:CDS 50.0%
! GTGGCCTGAAAGCATGCATA+AGG + chr4_2:1976380-1976399 Msa0583430:CDS 50.0%
CATAGTGACACTGACACACG+TGG + chr4_2:1976542-1976561 Msa0583430:intron 50.0%
TAGCGGAGATGATGTTGCCT+TGG + chr4_2:1976747-1976766 Msa0583430:intron 50.0%
ACTAAGTGGAGTCGGCTACA+TGG - chr4_2:1977066-1977085 None:intergenic 50.0%
! ATGTAGCCGACTCCACTTAG+TGG + chr4_2:1977065-1977084 Msa0583430:intron 50.0%
! TGTAGCCGACTCCACTTAGT+GGG + chr4_2:1977066-1977085 Msa0583430:intron 50.0%
CGACTCCACTTAGTGGGATA+AGG + chr4_2:1977072-1977091 Msa0583430:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_2:1977080-1977099 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_2:1977077-1977096 Msa0583430:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr4_2:1977672-1977691 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr4_2:1977676-1977695 None:intergenic 50.0%
GAGGTGATAGGCTGATGGAA+TGG + chr4_2:1978036-1978055 Msa0583430:intron 50.0%
CCCACAACAAGATTGCTGAC+AGG + chr4_2:1978181-1978200 Msa0583430:CDS 50.0%
CACTTTATATTCCCCGGTGG+TGG + chr4_2:1978240-1978259 Msa0583430:CDS 50.0%
TGGAAACATCGTACCACCAC+CGG - chr4_2:1978256-1978275 None:intergenic 50.0%
GGTGGTACGATGTTTCCAGA+TGG + chr4_2:1978258-1978277 Msa0583430:CDS 50.0%
TCTGAGGACTGCACTTGACA+TGG + chr4_2:1978335-1978354 Msa0583430:CDS 50.0%
CTGAGGACTGCACTTGACAT+GGG + chr4_2:1978336-1978355 Msa0583430:CDS 50.0%
ACTGCACTTGACATGGGATG+TGG + chr4_2:1978342-1978361 Msa0583430:CDS 50.0%
CTGCACTTGACATGGGATGT+GGG + chr4_2:1978343-1978362 Msa0583430:CDS 50.0%
TGCACTTGACATGGGATGTG+GGG + chr4_2:1978344-1978363 Msa0583430:CDS 50.0%
AGCCGGTATTCCTCTTTCCA+AGG - chr4_2:1978556-1978575 None:intergenic 50.0%
! CCGGCTTTTGTTGCTATGCT+TGG + chr4_2:1978570-1978589 Msa0583430:CDS 50.0%
GTGGATAGATTACTTCGCCC+TGG + chr4_2:1978782-1978801 Msa0583430:CDS 50.0%
GATAGATTACTTCGCCCTGG+TGG + chr4_2:1978785-1978804 Msa0583430:CDS 50.0%
!!! AACACCGGTTTTCAGGAGAG+GGG - chr4_2:1979271-1979290 None:intergenic 50.0%
!!! CAACACCGGTTTTCAGGAGA+GGG - chr4_2:1979272-1979291 None:intergenic 50.0%
!!! TCAACACCGGTTTTCAGGAG+AGG - chr4_2:1979273-1979292 None:intergenic 50.0%
ATGAGGCTGACACTAAGCTG+TGG + chr4_2:1979298-1979317 Msa0583430:CDS 50.0%
TGAGGCTGACACTAAGCTGT+GGG + chr4_2:1979299-1979318 Msa0583430:CDS 50.0%
CTGACACTAAGCTGTGGGTA+CGG + chr4_2:1979304-1979323 Msa0583430:CDS 50.0%
!!! AGAGTTGGTGGCTTTTGAGC+TGG - chr4_2:1979468-1979487 None:intergenic 50.0%
GTGATTCAATGCTGGCCACA+TGG - chr4_2:1980048-1980067 None:intergenic 50.0%
GAGGCTGTTGCTGTAAGTTG+CGG - chr4_2:1980590-1980609 None:intergenic 50.0%
CTTACCACAACAGTTCCCTC+CGG - chr4_2:1980747-1980766 None:intergenic 50.0%
GAATTTCTCATGCGGTGAGG+TGG + chr4_2:1980799-1980818 Msa0583430:CDS 50.0%
! TTTTCTCTGCCGTGTGAGTC+AGG - chr4_2:1980849-1980868 None:intergenic 50.0%
!! CGAAGTGTTGTTGTCGGTGG+TGG - chr4_2:1975755-1975774 None:intergenic 55.0%
! GTGTTGGTGCGTTTCCATGG+TGG - chr4_2:1976009-1976028 None:intergenic 55.0%
! CGTGTGTTGGTGCGTTTCCA+TGG - chr4_2:1976012-1976031 None:intergenic 55.0%
GAGACGCCATTGACGTGTGT+TGG - chr4_2:1976025-1976044 None:intergenic 55.0%
ACAAGACGGTTGCGCTGTTG+TGG - chr4_2:1976153-1976172 None:intergenic 55.0%
ACAACAGCGCAACCGTCTTG+TGG + chr4_2:1976152-1976171 Msa0583430:CDS 55.0%
CCGTCTTGTGGTGGCTATTG+AGG + chr4_2:1976164-1976183 Msa0583430:CDS 55.0%
TGAGGCTTGTCCTGCAAGTG+AGG + chr4_2:1976212-1976231 Msa0583430:CDS 55.0%
GGTGGATCATATGCCGTGTG+AGG + chr4_2:1976233-1976252 Msa0583430:CDS 55.0%
ATATGCCGTGTGAGGATCCG+AGG + chr4_2:1976241-1976260 Msa0583430:CDS 55.0%
TTCCTCCTCGGATCCTCACA+CGG - chr4_2:1976249-1976268 None:intergenic 55.0%
GAGACATTGTCCTTTGCCGG+AGG + chr4_2:1976305-1976324 Msa0583430:CDS 55.0%
! TCCACCGCCTAATGGGTATC+GGG + chr4_2:1976347-1976366 Msa0583430:CDS 55.0%
GGAACCCGATACCCATTAGG+CGG - chr4_2:1976354-1976373 None:intergenic 55.0%
!! GCCTAATGGGTATCGGGTTC+CGG + chr4_2:1976353-1976372 Msa0583430:CDS 55.0%
ACCGGAACCCGATACCCATT+AGG - chr4_2:1976357-1976376 None:intergenic 55.0%
ATGCTTTCAGGCCACCTCAC+CGG - chr4_2:1976375-1976394 None:intergenic 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr4_2:1977673-1977692 None:intergenic 55.0%
TGCTGACAGGAAAGGTCACC+AGG + chr4_2:1978194-1978213 Msa0583430:CDS 55.0%
GCTGACAGGAAAGGTCACCA+GGG + chr4_2:1978195-1978214 Msa0583430:CDS 55.0%
CTGACAGGAAAGGTCACCAG+GGG + chr4_2:1978196-1978215 Msa0583430:CDS 55.0%
CTTCTCGTTTCATCCACCCC+TGG - chr4_2:1978215-1978234 None:intergenic 55.0%
CAGGGGTGGATGAAACGAGA+AGG + chr4_2:1978213-1978232 Msa0583430:CDS 55.0%
GAAACATCGTACCACCACCG+GGG - chr4_2:1978254-1978273 None:intergenic 55.0%
GGAAACATCGTACCACCACC+GGG - chr4_2:1978255-1978274 None:intergenic 55.0%
TCATCTCCGGTCCTCCTGTT+CGG + chr4_2:1978816-1978835 Msa0583430:CDS 55.0%
TGTTTAGCCCACCGAACAGG+AGG - chr4_2:1978830-1978849 None:intergenic 55.0%
!! TCCTGTTCGGTGGGCTAAAC+AGG + chr4_2:1978829-1978848 Msa0583430:CDS 55.0%
TCCTGTTTAGCCCACCGAAC+AGG - chr4_2:1978833-1978852 None:intergenic 55.0%
ATGGTCAGATCTCCAGGCTG+TGG + chr4_2:1978859-1978878 Msa0583430:CDS 55.0%
AGATCTCCAGGCTGTGGCAA+AGG + chr4_2:1978865-1978884 Msa0583430:CDS 55.0%
GGAAGACACGAATCTGCTGC+TGG - chr4_2:1978944-1978963 None:intergenic 55.0%
CTGGGGACCTAAGTCAAGCT+TGG + chr4_2:1979002-1979021 Msa0583430:CDS 55.0%
CAATTCCCAAGTGGCCAGAG+AGG + chr4_2:1979223-1979242 Msa0583430:CDS 55.0%
! GTTAGCCTCTCTGGCCACTT+GGG - chr4_2:1979231-1979250 None:intergenic 55.0%
! AGTTAGCCTCTCTGGCCACT+TGG - chr4_2:1979232-1979251 None:intergenic 55.0%
AGGTCCCCTCTCCTGAAAAC+CGG + chr4_2:1979264-1979283 Msa0583430:CDS 55.0%
ACACTAAGCTGTGGGTACGG+AGG + chr4_2:1979307-1979326 Msa0583430:CDS 55.0%
CACTAAGCTGTGGGTACGGA+GGG + chr4_2:1979308-1979327 Msa0583430:CDS 55.0%
! TGATCGAATTTTGCGGCCGG+AGG + chr4_2:1980728-1980747 Msa0583430:CDS 55.0%
! GATCGAATTTTGCGGCCGGA+GGG + chr4_2:1980729-1980748 Msa0583430:CDS 55.0%
CGCGAATTTCTCATGCGGTG+AGG + chr4_2:1980796-1980815 Msa0583430:CDS 55.0%
GCGCTGTTGTGGATCAACGG+TGG - chr4_2:1976142-1976161 None:intergenic 60.0%
ACAGCGCAACCGTCTTGTGG+TGG + chr4_2:1976155-1976174 Msa0583430:CDS 60.0%
GGCTTGTCCTGCAAGTGAGG+TGG + chr4_2:1976215-1976234 Msa0583430:CDS 60.0%
TCCTTTGCCGGAGGAGACTG+CGG + chr4_2:1976314-1976333 Msa0583430:CDS 60.0%
ACCCGATACCCATTAGGCGG+TGG - chr4_2:1976351-1976370 None:intergenic 60.0%
!! ATGGGTATCGGGTTCCGGTG+AGG + chr4_2:1976358-1976377 Msa0583430:CDS 60.0%
ACAGGAAAGGTCACCAGGGG+TGG + chr4_2:1978199-1978218 Msa0583430:CDS 60.0%
CATGGGATGTGGGGTAAGCG+AGG + chr4_2:1978353-1978372 Msa0583430:intron 60.0%
ACAAGGCCTTTGCCACAGCC+TGG - chr4_2:1978874-1978893 None:intergenic 60.0%
TTCAGGAGAGGGGACCTCGA+AGG - chr4_2:1979261-1979280 None:intergenic 60.0%
TGCCGTGTGAGGATCCGAGG+AGG + chr4_2:1976244-1976263 Msa0583430:CDS 65.0%
ACCGCAGTCTCCTCCGGCAA+AGG - chr4_2:1976318-1976337 None:intergenic 65.0%
! GGTATCGGGTTCCGGTGAGG+TGG + chr4_2:1976361-1976380 Msa0583430:CDS 65.0%
TCTCCGGTCCTCCTGTTCGG+TGG + chr4_2:1978819-1978838 Msa0583430:CDS 65.0%
CTCCGGTCCTCCTGTTCGGT+GGG + chr4_2:1978820-1978839 Msa0583430:CDS 65.0%
AGCCCACCGAACAGGAGGAC+CGG - chr4_2:1978825-1978844 None:intergenic 65.0%
! GGTGCGGCAGTTAGCCTCTC+TGG - chr4_2:1979240-1979259 None:intergenic 65.0%
GGCTAACTGCCGCACCTTCG+AGG + chr4_2:1979244-1979263 Msa0583430:CDS 65.0%
GAGAGGGGACCTCGAAGGTG+CGG - chr4_2:1979256-1979275 None:intergenic 65.0%
CAGCACACGGCGGCGACCAA+GGG - chr4_2:1976112-1976131 None:intergenic 70.0%
TGGACGGAGCCAGCACACGG+CGG - chr4_2:1976122-1976141 None:intergenic 70.0%
CGGTGGACGGAGCCAGCACA+CGG - chr4_2:1976125-1976144 None:intergenic 70.0%
GCGGCCGGAGGGAACTGTTG+TGG + chr4_2:1980740-1980759 Msa0583430:CDS 70.0%
CACACGGCGGCGACCAAGGG+TGG - chr4_2:1976109-1976128 None:intergenic 75.0%
CCAGCACACGGCGGCGACCA+AGG - chr4_2:1976113-1976132 None:intergenic 75.0%
CCTTGGTCGCCGCCGTGTGC+TGG + chr4_2:1976110-1976129 Msa0583430:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1975618 1981204 1975618 ID=Msa0583430;Name=Msa0583430
chr4_2 mRNA 1975618 1981204 1975618 ID=Msa0583430-mRNA-1;Parent=Msa0583430;Name=Msa0583430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=370|1|1|1|1|1|7|299|589
chr4_2 exon 1975618 1976401 1975618 ID=Msa0583430-mRNA-1:exon:492;Parent=Msa0583430-mRNA-1
chr4_2 exon 1978162 1978365 1978162 ID=Msa0583430-mRNA-1:exon:493;Parent=Msa0583430-mRNA-1
chr4_2 exon 1978462 1978672 1978462 ID=Msa0583430-mRNA-1:exon:494;Parent=Msa0583430-mRNA-1
chr4_2 exon 1978762 1979023 1978762 ID=Msa0583430-mRNA-1:exon:495;Parent=Msa0583430-mRNA-1
chr4_2 exon 1979158 1979532 1979158 ID=Msa0583430-mRNA-1:exon:496;Parent=Msa0583430-mRNA-1
chr4_2 exon 1980003 1980098 1980003 ID=Msa0583430-mRNA-1:exon:497;Parent=Msa0583430-mRNA-1
chr4_2 exon 1980698 1981204 1980698 ID=Msa0583430-mRNA-1:exon:498;Parent=Msa0583430-mRNA-1
chr4_2 five_prime_UTR 1975618 1975987 1975618 ID=Msa0583430-mRNA-1:five_prime_utr;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1975988 1976401 1975988 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1978162 1978365 1978162 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1978462 1978672 1978462 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1978762 1979023 1978762 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1979158 1979532 1979158 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1980003 1980098 1980003 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 CDS 1980698 1980905 1980698 ID=Msa0583430-mRNA-1:cds;Parent=Msa0583430-mRNA-1
chr4_2 three_prime_UTR 1980906 1981204 1980906 ID=Msa0583430-mRNA-1:three_prime_utr;Parent=Msa0583430-mRNA-1
Gene Sequence

>Msa0583430

ATGCGTCACTCAAATTTCCCACCATGGAAACGCACCAACACACGTCAATGGCGTCTCATCGACCTCATTTCCATTGCCTTTTTCTCATTACTCTTTCTCTTCTTTGTTCTCTTTTACACCACCCTTGGTCGCCGCCGTGTGCTGGCTCCGTCCACCGTTGATCCACAACAGCGCAACCGTCTTGTGGTGGCTATTGAGGAAGGGATGTTAAATGGGAAGAGTATTGAGGCTTGTCCTGCAAGTGAGGTGGATCATATGCCGTGTGAGGATCCGAGGAGGAATAGTCAGTTGAGTAGAGAGATGAATTACTATAGGGAGAGACATTGTCCTTTGCCGGAGGAGACTGCGGTTTGTTTGATTCCACCGCCTAATGGGTATCGGGTTCCGGTGAGGTGGCCTGAAAGCATGCATAAGATATGGCATAGCAACATGCCCCACAACAAGATTGCTGACAGGAAAGGTCACCAGGGGTGGATGAAACGAGAAGGTCAACACTTTATATTCCCCGGTGGTGGTACGATGTTTCCAGATGGAGCAGAACAATATATCAAAAAACTTAGTCAATACATTCCCATAAATGGAGGTGTTCTGAGGACTGCACTTGACATGGGATGTGGGGTTGCTAGTTTTGGAGGATATTTACTAGCTCAAGATATTTTAACCATGTCTTTTGCTCCAAGAGATTCACATAAATCGCAGATACAATTTGCCTTGGAAAGAGGAATACCGGCTTTTGTTGCTATGCTTGGCACTCAAAGACTTCCATTTCCTGCTTTTGGATTTGACTTGGTTCATTGTTCTCGGTGTTTGATACCGTTTACAGCCTACAATGCAACTTATTTCATTGAAGTGGATAGATTACTTCGCCCTGGTGGATATCTAGTCATCTCCGGTCCTCCTGTTCGGTGGGCTAAACAGGAAAAAGAATGGTCAGATCTCCAGGCTGTGGCAAAGGCCTTGTGTTATGAACAGATAACTGTACATGAAAACACTGCAATCTGGAAGAAGCCAGCAGCAGATTCGTGTCTTCCTAATGGAAATGAGTTTGGTCTTGAATTATGTGATGATTCTGGGGACCTAAGTCAAGCTTGGTACTTTAAATTGAAGAGATGTGTAAGTAGTACGTCGTCTATCAAAGGAGATTATGCTATTGGAACAATTCCCAAGTGGCCAGAGAGGCTAACTGCCGCACCTTCGAGGTCCCCTCTCCTGAAAACCGGTGTTGATGTATATGAGGCTGACACTAAGCTGTGGGTACGGAGGGTTGCACATTATAAGAATTCACTAAATATAAAGTTGGGGACTCCATCAATACGCAACGTTATGGACATGAATGCATTATATGGGGGTTTTGCAGCTGCCTTAAAATCTGATCCTGTGTGGGTGATGAATGTAGTTCCAGCTCAAAAGCCACCAACTCTTGATGCGATCTTTGACAGAGGACTTATTGGTGTCTATCATGATTGGTGTGAACCTTTTTCAACATACCCTCGAACTTATGATCTGATCCATGTGGCCAGCATTGAATCACTTATAAAAGATCCAGCTACTGGTAAAAAAAGATGTAATATTGTTGATTTGATGGTGGAAATTGATCGAATTTTGCGGCCGGAGGGAACTGTTGTGGTAAGAGATGCTCCCGAAGTAATTGACAAAGTAGCGCGAATTTCTCATGCGGTGAGGTGGAAGCCGACCATTTATGATAAAGAACCTGACTCACACGGCAGAGAAAAAATTCTAGTTTTGACCAAGACCTTATGGAAGCTCTAA
Protein sequence

>Msa0583430

MRHSNFPPWKRTNTRQWRLIDLISIAFFSLLFLFFVLFYTTLGRRRVLAPSTVDPQQRNRLVVAIEEGMLNGKSIEACPASEVDHMPCEDPRRNSQLSREMNYYRERHCPLPEETAVCLIPPPNGYRVPVRWPESMHKIWHSNMPHNKIADRKGHQGWMKREGQHFIFPGGGTMFPDGAEQYIKKLSQYIPINGGVLRTALDMGCGVASFGGYLLAQDILTMSFAPRDSHKSQIQFALERGIPAFVAMLGTQRLPFPAFGFDLVHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVRWAKQEKEWSDLQAVAKALCYEQITVHENTAIWKKPAADSCLPNGNEFGLELCDDSGDLSQAWYFKLKRCVSSTSSIKGDYAIGTIPKWPERLTAAPSRSPLLKTGVDVYEADTKLWVRRVAHYKNSLNIKLGTPSIRNVMDMNALYGGFAAALKSDPVWVMNVVPAQKPPTLDAIFDRGLIGVYHDWCEPFSTYPRTYDLIHVASIESLIKDPATGKKRCNIVDLMVEIDRILRPEGTVVVRDAPEVIDKVARISHAVRWKPTIYDKEPDSHGREKILVLTKTLWKL*