AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585280 MtrunA17_Chr1g0202341 77.104 297 68 0 114 410 389 685 3.76e-164 484
Msa0585280 MtrunA17_Chr1g0202341 63.717 113 39 1 4 114 12 124 4.39e-37 146
Msa0585280 MtrunA17_Chr5g0448761 42.069 290 155 2 114 397 405 687 2.48e-71 244
Msa0585280 MtrunA17_Chr5g0448511 37.979 287 171 2 114 397 177 459 1.16e-67 229
Msa0585280 MtrunA17_Chr3g0118611 31.387 411 238 8 115 504 284 671 4.44e-57 205
Msa0585280 MtrunA17_Chr5g0440451 37.024 289 165 4 115 397 387 664 2.92e-55 201
Msa0585280 MtrunA17_Chr3g0080351 35.125 279 170 3 114 390 404 673 2.89e-48 180
Msa0585280 MtrunA17_Chr1g0198761 30.641 359 229 6 123 480 405 744 1.04e-45 172
Msa0585280 MtrunA17_Chr2g0287061 35.811 296 172 5 105 394 474 757 2.09e-44 169
Msa0585280 MtrunA17_Chr2g0329031 30.086 349 224 6 113 449 342 682 2.07e-43 166
Msa0585280 MtrunA17_Chr1g0207551 34.296 277 175 2 115 391 371 640 2.83e-43 166
Msa0585280 MtrunA17_Chr5g0441581 39.565 230 130 5 116 338 360 587 1.54e-40 157
Msa0585280 MtrunA17_Chr2g0291581 30.565 301 192 5 114 404 394 687 1.53e-39 154
Msa0585280 MtrunA17_Chr6g0477261 32.749 342 205 10 108 441 216 540 3.37e-38 149
Msa0585280 MtrunA17_Chr2g0296781 31.988 347 211 10 103 441 322 651 1.39e-36 145
Msa0585280 MtrunA17_Chr8g0363841 30.357 336 212 6 98 412 334 668 1.59e-35 142
Msa0585280 MtrunA17_Chr3g0077241 70.652 92 21 2 6 94 1 89 1.62e-35 129
Msa0585280 MtrunA17_Chr1g0196541 37.104 221 131 4 116 329 332 551 6.38e-35 140
Msa0585280 MtrunA17_Chr2g0294841 24.090 357 251 5 122 469 400 745 2.82e-31 129
Msa0585280 MtrunA17_Chr6g0458391 31.278 227 155 1 108 334 540 765 4.38e-30 125
Msa0585280 MtrunA17_Chr2g0324011 30.078 256 164 6 88 334 319 568 1.36e-29 123
Msa0585280 MtrunA17_Chr2g0276841 31.071 280 178 7 121 399 421 686 1.44e-29 124
Msa0585280 MtrunA17_Chr4g0052331 57.895 95 38 1 1 93 1 95 4.31e-29 110
Msa0585280 MtrunA17_Chr2g0287651 29.167 240 166 2 96 334 396 632 7.22e-28 119
Msa0585280 MtrunA17_Chr2g0290391 29.670 273 175 5 122 394 411 666 8.98e-28 118
Msa0585280 MtrunA17_Chr1g0203721 25.338 296 219 2 109 404 399 692 2.30e-27 117
Msa0585280 MtrunA17_Chr2g0308841 26.697 221 155 3 114 330 6 223 2.49e-24 102
Msa0585280 MtrunA17_Chr3g0082121 27.119 295 205 4 88 378 345 633 3.14e-24 107
Msa0585280 MtrunA17_Chr2g0291591 31.138 167 114 1 113 278 396 562 1.35e-19 92.4
Msa0585280 MtrunA17_Chr1g0203051 23.445 209 159 1 115 322 414 622 8.58e-18 87.0
Msa0585280 MtrunA17_Chr5g0407081 92.308 39 3 0 553 591 580 618 3.71e-15 79.0
Msa0585280 MtrunA17_Chr2g0329361 42.029 69 40 0 39 107 59 127 1.58e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585280 AT4G38180.1 40.493 284 160 2 111 390 411 689 1.70e-63 223
Msa0585280 AT4G38170.1 32.941 340 215 5 115 452 180 508 8.79e-57 200
Msa0585280 AT2G27110.3 36.071 280 173 2 115 394 217 490 2.20e-54 197
Msa0585280 AT2G27110.2 36.071 280 173 2 115 394 362 635 8.98e-54 197
Msa0585280 AT2G27110.1 36.071 280 173 2 115 394 362 635 8.98e-54 197
Msa0585280 AT5G18960.2 35.374 294 165 4 110 394 507 784 2.58e-49 183
Msa0585280 AT5G18960.1 35.374 294 165 4 110 394 507 784 2.58e-49 183
Msa0585280 AT3G06250.2 33.333 294 171 4 110 394 483 760 1.53e-47 178
Msa0585280 AT3G06250.1 33.333 294 171 4 110 394 483 760 1.53e-47 178
Msa0585280 AT3G06250.3 33.333 294 171 4 110 394 483 760 1.53e-47 178
Msa0585280 AT4G15090.1 32.131 305 195 4 113 412 389 686 1.33e-45 173
Msa0585280 AT4G15090.5 32.131 305 195 4 113 412 389 686 1.33e-45 173
Msa0585280 AT4G15090.3 32.131 305 195 4 113 412 389 686 1.33e-45 173
Msa0585280 AT4G15090.2 32.131 305 195 4 113 412 389 686 1.33e-45 173
Msa0585280 AT4G15090.4 32.131 305 195 4 113 412 389 686 1.33e-45 173
Msa0585280 AT3G22170.2 31.655 278 182 2 114 391 399 668 2.36e-44 169
Msa0585280 AT3G22170.1 31.655 278 182 2 114 391 399 668 2.36e-44 169
Msa0585280 AT1G76320.2 30.357 280 186 3 114 393 327 597 2.07e-39 154
Msa0585280 AT1G76320.3 30.357 280 186 3 114 393 327 597 2.09e-39 154
Msa0585280 AT1G76320.1 30.357 280 186 3 114 393 327 597 2.19e-39 154
Msa0585280 AT1G76320.4 30.357 280 186 3 114 393 327 597 2.19e-39 154
Msa0585280 AT1G52520.1 27.551 294 202 4 113 398 409 699 1.60e-36 145
Msa0585280 AT4G19990.1 30.584 291 188 4 108 393 275 556 9.99e-36 143
Msa0585280 AT4G19990.5 30.584 291 188 4 108 393 332 613 1.20e-35 143
Msa0585280 AT2G32250.8 30.314 287 187 5 115 398 294 570 1.48e-35 142
Msa0585280 AT4G19990.3 30.584 291 188 4 108 393 332 613 1.49e-35 142
Msa0585280 AT4G19990.4 30.584 291 188 4 108 393 332 613 1.49e-35 142
Msa0585280 AT2G32250.7 30.314 287 187 5 115 398 294 570 1.60e-35 142
Msa0585280 AT2G32250.6 33.761 234 150 4 115 345 335 566 1.63e-35 142
Msa0585280 AT2G32250.1 33.761 234 150 4 115 345 335 566 1.63e-35 142
Msa0585280 AT2G32250.3 33.761 234 150 4 115 345 335 566 1.63e-35 142
Msa0585280 AT2G32250.5 30.314 287 187 5 115 398 335 611 1.70e-35 142
Msa0585280 AT4G19990.7 30.584 291 188 4 108 393 346 627 1.75e-35 142
Msa0585280 AT2G32250.2 33.761 234 150 4 115 345 335 566 1.86e-35 142
Msa0585280 AT2G32250.4 33.761 234 150 4 115 345 335 566 1.86e-35 142
Msa0585280 AT4G19990.6 30.584 291 188 4 108 393 332 613 2.04e-35 142
Msa0585280 AT4G19990.2 30.584 291 188 4 108 393 332 613 2.04e-35 142
Msa0585280 AT1G80010.1 25.796 314 220 6 97 403 418 725 2.79e-31 129
Msa0585280 AT5G28530.4 27.473 273 179 6 122 388 352 611 2.68e-26 114
Msa0585280 AT5G28530.1 27.306 271 182 5 122 388 415 674 3.34e-26 114
Msa0585280 AT1G10240.2 27.037 270 189 4 121 389 399 661 2.76e-25 111
Msa0585280 AT1G10240.1 27.037 270 189 4 121 389 399 661 2.76e-25 111
Msa0585280 AT5G28530.5 26.740 273 177 6 122 388 352 607 3.41e-25 110
Msa0585280 AT5G28530.3 26.568 271 180 5 122 388 415 670 4.51e-25 110
Msa0585280 AT5G28530.2 26.568 271 180 5 122 388 415 670 4.51e-25 110

Find 122 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCTGCGATAAATATT+TGG 0.074822 4_2:+5849274 None:intergenic
TCTGGTGTGATTTCAGATTT+TGG 0.165437 4_2:-5848266 Msa0585280:CDS
TGCTGGATCACACAAATTTA+TGG 0.194971 4_2:+5848762 None:intergenic
TTTGTCTTTCTTAGCATTTA+TGG 0.224272 4_2:+5849038 None:intergenic
TTCATTGTTTAATAGTATTA+TGG 0.225254 4_2:-5848959 Msa0585280:CDS
CATTCCTTCAAAGGGCTCTA+AGG 0.261818 4_2:+5850715 None:intergenic
TATTCATACTTTCACTCCTT+TGG 0.266644 4_2:+5849517 None:intergenic
GAAGAAGATTATGGAAGTTT+TGG 0.293650 4_2:-5851128 Msa0585280:five_prime_UTR
AAAGTACGTGGACGACCTTT+AGG 0.294239 4_2:+5848730 None:intergenic
ATTCATACTTTCACTCCTTT+GGG 0.296462 4_2:+5849518 None:intergenic
AGGAATCCACTTTGCTCTAA+TGG 0.305027 4_2:+5849581 None:intergenic
TCAAAGGTGGTGGGTTTCTC+TGG 0.316993 4_2:-5848284 Msa0585280:CDS
TTTCTCTGCGATAAATATTT+GGG 0.322581 4_2:+5849275 None:intergenic
CTGATGACTTTGATTCTGAT+TGG 0.333619 4_2:-5849662 Msa0585280:CDS
GCAGTGTTCATGAAGACTTT+TGG 0.334930 4_2:-5845828 Msa0585280:CDS
CTCGGTTTCTGCCTTCTTCA+AGG 0.341954 4_2:+5848992 None:intergenic
AGAACGGATGGTAGGGTAAT+TGG 0.353327 4_2:-5850599 Msa0585280:CDS
TGAAAAGTCACATGATAGTT+AGG 0.355149 4_2:+5849195 None:intergenic
AAGTACGTGGACGACCTTTA+GGG 0.355782 4_2:+5848731 None:intergenic
TTGGACAACTACGTTTGTTA+TGG 0.355995 4_2:+5848638 None:intergenic
GAATTAACAAACTCTTCATT+TGG 0.362566 4_2:+5848823 None:intergenic
TTTACGAATGAAAGGCAGTT+TGG 0.366602 4_2:-5848710 Msa0585280:CDS
GACAAATCAGGAGTTGATAT+TGG 0.366622 4_2:+5845784 None:intergenic
TTCTAGTTTGGTTGATTAAG+AGG 0.375412 4_2:-5848456 Msa0585280:intron
TTGTCACATGTTTGAATTTG+TGG 0.379138 4_2:-5849145 Msa0585280:CDS
GATCACACAAATTTATGGTT+TGG 0.379156 4_2:+5848767 None:intergenic
TGATGACTTTGATTCTGATT+GGG 0.384063 4_2:-5849661 Msa0585280:CDS
ACAAGGTACGCGAGGAATAA+AGG 0.387113 4_2:-5850656 Msa0585280:CDS
AGTCATCAGTAGTGATAGTT+TGG 0.400979 4_2:+5849676 None:intergenic
TCGACAAAACTATCCTTTAG+TGG 0.405205 4_2:+5848309 None:intergenic
CAGTGTTAAAGCTTCTAGTT+TGG 0.410648 4_2:-5848468 Msa0585280:CDS
CTTCTTCGAAGACGGTTCTC+AGG 0.416570 4_2:+5851144 None:intergenic
AATCACAAAACTTGATCAAT+TGG 0.417160 4_2:-5848857 Msa0585280:CDS
GTTTGGTCATCGGAGACTTT+AGG 0.421530 4_2:+5848784 None:intergenic
TTTGCGCACTTTATATCCTA+TGG 0.426133 4_2:-5849364 Msa0585280:CDS
CAGACCTGCTTTGCCACTAA+AGG 0.433153 4_2:-5848322 Msa0585280:CDS
CTGCATACTGATGCAATACT+TGG 0.435997 4_2:+5845850 None:intergenic
AATGAAGTGTAGTTATTGCC+AGG 0.439936 4_2:-5848668 Msa0585280:CDS
CAAATTTATGGTTTGGTCAT+CGG 0.439940 4_2:+5848774 None:intergenic
ACTTTCACTCCTTTGGGTGG+TGG 0.440297 4_2:+5849524 None:intergenic
CATGAACATACCAACATGAT+TGG 0.442395 4_2:-5850800 Msa0585280:CDS
CTATCCTTTAGTGGCAAAGC+AGG 0.446607 4_2:+5848318 None:intergenic
TTTCTGCCATTCGCTGCTAA+AGG 0.450551 4_2:-5847012 Msa0585280:CDS
TGGTCTGAGACATTATAAAC+AGG 0.455253 4_2:-5851108 Msa0585280:intron
ACCGTCTTCGAAGAAGATTA+TGG 0.460480 4_2:-5851137 Msa0585280:five_prime_UTR
TATCATCTCGAGGACAAATC+AGG 0.460499 4_2:+5845772 None:intergenic
GCTGTTTGTGTTGAAGCTGC+AGG 0.463453 4_2:-5847069 Msa0585280:CDS
AAAAGTGTTCAAGATATTCC+AGG 0.469314 4_2:-5849313 Msa0585280:CDS
ATATTGCAATTCAAGCTTTG+CGG 0.469966 4_2:-5848885 Msa0585280:CDS
CTCAATATGTTCTAAGTCGA+TGG 0.471677 4_2:-5849062 Msa0585280:CDS
GTCGTGTTTGCCTCGTTCGC+AGG 0.474701 4_2:+5851192 None:intergenic
CTTAGAGCCCTTTGAAGGAA+TGG 0.476103 4_2:-5850714 Msa0585280:CDS
TGTCACATGTTTGAATTTGT+GGG 0.478839 4_2:-5849144 Msa0585280:CDS
TGTAGTTATTGCCAGGGAAA+AGG 0.481720 4_2:-5848661 Msa0585280:CDS
TTTGAAGCCTCTTCTTCCAT+AGG 0.482226 4_2:+5849348 None:intergenic
ATTCCTTCAAAGGGCTCTAA+GGG 0.488264 4_2:+5850716 None:intergenic
CTCCCCTTAGAGCCCTTTGA+AGG 0.489876 4_2:-5850719 Msa0585280:CDS
CAAGATATTCCAGGATGAGT+TGG 0.493978 4_2:-5849304 Msa0585280:CDS
ACGAGTTGCAAGATAACAAA+TGG 0.498356 4_2:-5849620 Msa0585280:CDS
TCAATACAACAAAACTCAAT+CGG 0.499836 4_2:-5851275 Msa0585280:five_prime_UTR
GGGATCCAACCAACTCATCC+TGG 0.504100 4_2:+5849295 None:intergenic
TCAAGAGATTCTTTGTTCAA+AGG 0.507548 4_2:-5850576 Msa0585280:CDS
GGCTCTAAGGGGAGCTCCAA+TGG 0.508044 4_2:+5850728 None:intergenic
TTTGTCGAACTCAAAGGTGG+TGG 0.509167 4_2:-5848294 Msa0585280:CDS
TGTAAACTCCATTCCTTCAA+AGG 0.510474 4_2:+5850706 None:intergenic
ATTGGAATTAAATATTCAGT+TGG 0.514043 4_2:+5845802 None:intergenic
TTTATATCCTATGGAAGAAG+AGG 0.514709 4_2:-5849355 Msa0585280:CDS
TCCATAATCTTCTTCGAAGA+CGG 0.517402 4_2:+5851136 None:intergenic
TGTGTCACAAACTTGCTCAA+TGG 0.518813 4_2:+5849462 None:intergenic
AGATTCTTTGTTCAAAGGAG+GGG 0.523644 4_2:-5850571 Msa0585280:CDS
GTAAACTCCATTCCTTCAAA+GGG 0.524520 4_2:+5850707 None:intergenic
CATACTTTCACTCCTTTGGG+TGG 0.526942 4_2:+5849521 None:intergenic
GCAATTGAAGACCTTGAAGA+AGG 0.526963 4_2:-5849003 Msa0585280:CDS
GGATATAAAGTGCGCAAAAG+TGG 0.527400 4_2:+5849369 None:intergenic
TCTCAATGATAGACTACCAT+TGG 0.530176 4_2:-5850744 Msa0585280:CDS
GATGACTTTGATTCTGATTG+GGG 0.531464 4_2:-5849660 Msa0585280:CDS
ACAATGAAGTACTTGAAGCT+CGG 0.532331 4_2:+5848974 None:intergenic
AATTTCATGAATCTTGTATG+TGG 0.536832 4_2:+5849230 None:intergenic
TAAATCAAGAACGGATGGTA+GGG 0.537380 4_2:-5850606 Msa0585280:CDS
GCTAAGAAAGACAAAAGTAA+AGG 0.538204 4_2:-5849030 Msa0585280:CDS
CCAGCACGTGCTGTCCCTAA+AGG 0.538600 4_2:-5848745 Msa0585280:CDS
GAGATTCTTTGTTCAAAGGA+GGG 0.539548 4_2:-5850572 Msa0585280:CDS
CCTTTAGGGACAGCACGTGC+TGG 0.541388 4_2:+5848745 None:intergenic
CAAACTAGAAGCTTTAACAC+TGG 0.542498 4_2:+5848469 None:intergenic
TGTGTTGAATGTATTCATCA+AGG 0.542961 4_2:-5849106 Msa0585280:CDS
AGAGATTCTTTGTTCAAAGG+AGG 0.550163 4_2:-5850573 Msa0585280:CDS
ATATTCCAGGATGAGTTGGT+TGG 0.550283 4_2:-5849300 Msa0585280:CDS
TCGCAGGAACAAAAGAAAGT+AGG 0.550342 4_2:+5851208 None:intergenic
CTAAATCAAGAACGGATGGT+AGG 0.552075 4_2:-5850607 Msa0585280:CDS
GTCCAAGTTTAAAACATGGA+AGG 0.552269 4_2:-5848621 Msa0585280:intron
CATACTGATGCAATACTTGG+AGG 0.552865 4_2:+5845853 None:intergenic
AAATTGTGACGTACATAAGA+AGG 0.554526 4_2:+5849561 None:intergenic
TTGTCGAACTCAAAGGTGGT+GGG 0.560817 4_2:-5848293 Msa0585280:CDS
TGCAATTCAAGCTTTGCGGA+AGG 0.564681 4_2:-5848881 Msa0585280:CDS
GAGAGAAGAATGTTAAAACA+AGG 0.570551 4_2:-5849401 Msa0585280:CDS
CGACTTAGAACATATTGAGA+AGG 0.572343 4_2:+5849066 None:intergenic
ACAAATCCTTTAGCAGCGAA+TGG 0.574847 4_2:+5847006 None:intergenic
ATGAAGTGTAGTTATTGCCA+GGG 0.575207 4_2:-5848667 Msa0585280:CDS
GCCTGGTGTTGCAGGTCTGG+TGG 0.594525 4_2:-5847102 Msa0585280:intron
GACTTAGAACATATTGAGAA+GGG 0.597241 4_2:+5849067 None:intergenic
CCACGTACTTTACGAATGAA+AGG 0.600807 4_2:-5848718 Msa0585280:CDS
TCTACTCCATTAGAGCAAAG+TGG 0.602196 4_2:-5849587 Msa0585280:CDS
ATCATCTGAGCCAATCATGT+TGG 0.609119 4_2:+5850790 None:intergenic
GTTACTAAATCAAGAACGGA+TGG 0.614185 4_2:-5850611 Msa0585280:CDS
TTTGTGTTGAAGCTGCAGGA+AGG 0.615745 4_2:-5847065 Msa0585280:CDS
CAACACAAACAGCAGAGCAG+CGG 0.616751 4_2:+5847079 None:intergenic
AGTTGTCCAAGTTTAAAACA+TGG 0.618004 4_2:-5848625 Msa0585280:CDS
CCTTTCATTCGTAAAGTACG+TGG 0.618728 4_2:+5848718 None:intergenic
TTATAGTACATGATCAAACA+AGG 0.619283 4_2:-5850508 Msa0585280:CDS
AATGGTAGTCTATCATTGAG+AGG 0.621900 4_2:+5850746 None:intergenic
AATGGCAGAAAATCAGCACC+AGG 0.625686 4_2:+5847024 None:intergenic
CTGGAATGTCCACCACCCAA+AGG 0.639739 4_2:-5849533 Msa0585280:CDS
TCGTGTTACTAAATCAAGAA+CGG 0.641576 4_2:-5850615 Msa0585280:CDS
GTTTGTGACACAATATGAGA+AGG 0.645219 4_2:-5849451 Msa0585280:CDS
TCTCTTGAACTATCTGAGAG+AGG 0.647890 4_2:-5848931 Msa0585280:CDS
AATACTACACAAGGTACGCG+AGG 0.651596 4_2:-5850664 Msa0585280:CDS
TCTTGATGCACGTTATAACA+AGG 0.672143 4_2:-5849427 Msa0585280:CDS
TTCCTTCAAAGGGCTCTAAG+GGG 0.687755 4_2:+5850717 None:intergenic
CGGTTCTCAGGTCGTAACAG+CGG 0.694705 4_2:+5851156 None:intergenic
GGCACAACAGTATCATCTCG+AGG 0.705523 4_2:+5845762 None:intergenic
TATAGTACATGATCAAACAA+GGG 0.707069 4_2:-5850507 Msa0585280:intron
TCTTTAGGAGAACTACACTG+AGG 0.805453 4_2:-5845878 Msa0585280:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAAATAAATTAAA+AGG - chr4_2:5850418-5850437 Msa0585280:intron 0.0%
!!! TTCTTTTTTCAAATTTTTTT+GGG + chr4_2:5846534-5846553 None:intergenic 10.0%
!!! TTTCTTTTTTCAAATTTTTT+TGG + chr4_2:5846535-5846554 None:intergenic 10.0%
!! AAAAATTTGAAAAAAGAAAA+TGG - chr4_2:5846536-5846555 Msa0585280:intron 10.0%
!!! AAGTATGAATAAATTTTTTA+AGG - chr4_2:5847567-5847586 Msa0585280:intron 10.0%
!!! AGTATGAATAAATTTTTTAA+GGG - chr4_2:5847568-5847587 Msa0585280:intron 10.0%
!! TGATCAAAAAAATAATATAA+TGG - chr4_2:5849734-5849753 Msa0585280:intron 10.0%
!! AATAATTAATAACATCTTGT+TGG + chr4_2:5846835-5846854 None:intergenic 15.0%
!!! TATTTATTTGTTAAGTATGT+TGG + chr4_2:5847058-5847077 None:intergenic 15.0%
!! TTCATTGTTTAATAGTATTA+TGG - chr4_2:5848113-5848132 Msa0585280:intron 15.0%
!!! TATTGGTATTATTATTTTCT+TGG - chr4_2:5848639-5848658 Msa0585280:CDS 15.0%
!!! ATATTATTTTTTTGATCAAG+CGG + chr4_2:5849732-5849751 None:intergenic 15.0%
!!! TTTTATTATTACAATGTGAA+AGG - chr4_2:5849878-5849897 Msa0585280:intron 15.0%
!! TTTATTATTACAATGTGAAA+GGG - chr4_2:5849879-5849898 Msa0585280:intron 15.0%
!! TCATTTCAAAAAAAAAAAGT+TGG - chr4_2:5850334-5850353 Msa0585280:intron 15.0%
!!! CATATCTTTTTTTCTTTTTT+TGG - chr4_2:5850652-5850671 Msa0585280:CDS 15.0%
!! TTCATATTTAAACATGTTTG+TGG - chr4_2:5846101-5846120 Msa0585280:intron 20.0%
!!! TTAACTTGCTTTTCTAAATA+TGG - chr4_2:5846174-5846193 Msa0585280:intron 20.0%
!! ATGTAAAAAAATACTACACA+AGG - chr4_2:5846399-5846418 Msa0585280:intron 20.0%
!!! AATAAGTTTTTTTTGCACTT+TGG + chr4_2:5846723-5846742 None:intergenic 20.0%
!! AGACAAAAACAATTAGAAAA+TGG - chr4_2:5846866-5846885 Msa0585280:intron 20.0%
!!! TAAATTAGCAAATTGCTTTT+GGG - chr4_2:5846976-5846995 Msa0585280:intron 20.0%
!! AATTCACACTAGAAATATTA+AGG + chr4_2:5848853-5848872 None:intergenic 20.0%
!!! TATTATTTTTTTGATCAAGC+GGG + chr4_2:5849731-5849750 None:intergenic 20.0%
!!! AGAGAATTTATTGATAACTT+AGG - chr4_2:5849787-5849806 Msa0585280:intron 20.0%
!!! TTTGAGTTTTTTTGTTTAGT+AGG - chr4_2:5850144-5850163 Msa0585280:intron 20.0%
!! TTCAATTTCAGATTCAAATT+TGG - chr4_2:5850501-5850520 Msa0585280:intron 20.0%
!! TCAATTTCAGATTCAAATTT+GGG - chr4_2:5850502-5850521 Msa0585280:intron 20.0%
!! CATTTGGTTATAATTCTATT+TGG + chr4_2:5850938-5850957 None:intergenic 20.0%
!! ACTCTGAATGAAAATAAAAA+GGG - chr4_2:5851016-5851035 Msa0585280:intron 20.0%
!! AAAATGACAAGAAAAATGAA+TGG - chr4_2:5851078-5851097 Msa0585280:intron 20.0%
!! ATTGGAATTAAATATTCAGT+TGG + chr4_2:5851273-5851292 None:intergenic 20.0%
!!! ATTGAGTTTTGTTGTATTGA+GGG + chr4_2:5845797-5845816 None:intergenic 25.0%
! TCAATACAACAAAACTCAAT+CGG - chr4_2:5845797-5845816 Msa0585280:CDS 25.0%
!!! CTTTCTCTTTTTTCAATTGA+AGG - chr4_2:5845822-5845841 Msa0585280:CDS 25.0%
!!! AGTCTCCAAATATTTTTGTT+TGG - chr4_2:5846069-5846088 Msa0585280:intron 25.0%
! CATTGCCAAACAAAAATATT+TGG + chr4_2:5846077-5846096 None:intergenic 25.0%
!! GAATTTTTATTCAGCATAAC+AGG - chr4_2:5846207-5846226 Msa0585280:intron 25.0%
! TTATAGTACATGATCAAACA+AGG - chr4_2:5846564-5846583 Msa0585280:intron 25.0%
! TATAGTACATGATCAAACAA+GGG - chr4_2:5846565-5846584 Msa0585280:intron 25.0%
! ATATCAAGAAAAGTGAAGAT+AGG - chr4_2:5846609-5846628 Msa0585280:intron 25.0%
!! TAAGAAACTGTGAACTTTTT+GGG + chr4_2:5846682-5846701 None:intergenic 25.0%
!! GTTTTTCTATGCATTTCAAA+TGG - chr4_2:5846943-5846962 Msa0585280:intron 25.0%
!! GTAAATTAGCAAATTGCTTT+TGG - chr4_2:5846975-5846994 Msa0585280:intron 25.0%
!! AGAATGGCTTACAAATATTT+TGG - chr4_2:5847013-5847032 Msa0585280:CDS 25.0%
!!! TTACAAATATTTTGGTGATG+TGG - chr4_2:5847021-5847040 Msa0585280:CDS 25.0%
!! TGATCAGTGATAATAGTTTT+AGG + chr4_2:5847223-5847242 None:intergenic 25.0%
!!! ACTTCTATTTCTAATTCAGT+TGG - chr4_2:5847247-5847266 Msa0585280:intron 25.0%
!! TATTTCTAATTCAGTTGGAA+AGG - chr4_2:5847252-5847271 Msa0585280:intron 25.0%
! TTTCTCTGCGATAAATATTT+GGG + chr4_2:5847800-5847819 None:intergenic 25.0%
! AATTTCATGAATCTTGTATG+TGG + chr4_2:5847845-5847864 None:intergenic 25.0%
! TTTGTCTTTCTTAGCATTTA+TGG + chr4_2:5848037-5848056 None:intergenic 25.0%
! AATCACAAAACTTGATCAAT+TGG - chr4_2:5848215-5848234 Msa0585280:intron 25.0%
! GAATTAACAAACTCTTCATT+TGG + chr4_2:5848252-5848271 None:intergenic 25.0%
! AAATATCAATTGGTACTATC+AGG + chr4_2:5848936-5848955 None:intergenic 25.0%
! CCTACAAATCAAATATCAAT+TGG + chr4_2:5848946-5848965 None:intergenic 25.0%
!!! CCAATTGATATTTGATTTGT+AGG - chr4_2:5848943-5848962 Msa0585280:CDS 25.0%
!!! GTTTTTACTTTAGTTTTAGC+TGG - chr4_2:5848967-5848986 Msa0585280:CDS 25.0%
! ATAAAAGTTGTGCAAAAGAT+CGG - chr4_2:5849221-5849240 Msa0585280:CDS 25.0%
!! ATGGATTGAAACAAATTCTT+TGG - chr4_2:5849323-5849342 Msa0585280:CDS 25.0%
! TTGTAACAAAGGTAAAACAA+AGG + chr4_2:5849546-5849565 None:intergenic 25.0%
!! GTTTTACCTTTGTTACAAAA+TGG - chr4_2:5849548-5849567 Msa0585280:CDS 25.0%
!! GTATTTCTATATCTTGTACT+CGG - chr4_2:5849674-5849693 Msa0585280:CDS 25.0%
!! ATAATGGTCTTAAAAAAGTC+AGG - chr4_2:5849750-5849769 Msa0585280:intron 25.0%
! GGTATAAGTTAAAAGTAACA+TGG - chr4_2:5849808-5849827 Msa0585280:intron 25.0%
! GAAAACATGTACTTTATTGT+CGG + chr4_2:5850360-5850379 None:intergenic 25.0%
! CAATTTCAGATTCAAATTTG+GGG - chr4_2:5850503-5850522 Msa0585280:intron 25.0%
! AGAAAAATGATTGTTAGCTA+TGG + chr4_2:5850563-5850582 None:intergenic 25.0%
! ATGTATTTGACTATTCAAGT+AGG - chr4_2:5850808-5850827 Msa0585280:CDS 25.0%
!!! TTTGATGATGTTCAATCATT+TGG + chr4_2:5850954-5850973 None:intergenic 25.0%
! GACTCTGAATGAAAATAAAA+AGG - chr4_2:5851015-5851034 Msa0585280:intron 25.0%
!!! GATTGAGTTTTGTTGTATTG+AGG + chr4_2:5845798-5845817 None:intergenic 30.0%
! GAAGAAGATTATGGAAGTTT+TGG - chr4_2:5845944-5845963 Msa0585280:intron 30.0%
TAACCACATCTTCAATTACT+TGG - chr4_2:5845992-5846011 Msa0585280:intron 30.0%
AAACCAAGTAATTGAAGATG+TGG + chr4_2:5845998-5846017 None:intergenic 30.0%
!!! TAAAGGTTTTAGCTTTCGTA+TGG - chr4_2:5846433-5846452 Msa0585280:intron 30.0%
!!! AAAGGTTTTAGCTTTCGTAT+GGG - chr4_2:5846434-5846453 Msa0585280:intron 30.0%
! TCGTGTTACTAAATCAAGAA+CGG - chr4_2:5846457-5846476 Msa0585280:intron 30.0%
TCAAGAGATTCTTTGTTCAA+AGG - chr4_2:5846496-5846515 Msa0585280:intron 30.0%
! AAGAAACTGTGAACTTTTTG+GGG + chr4_2:5846681-5846700 None:intergenic 30.0%
! CTAAGAAACTGTGAACTTTT+TGG + chr4_2:5846683-5846702 None:intergenic 30.0%
!!! ACACTGATGCTATTTTACTA+GGG + chr4_2:5846772-5846791 None:intergenic 30.0%
!!! AACACTGATGCTATTTTACT+AGG + chr4_2:5846773-5846792 None:intergenic 30.0%
! AACCAAAAAGTATAGACTGT+TGG + chr4_2:5847120-5847139 None:intergenic 30.0%
!!! AAACTGAAGAGAGTTTTGTT+TGG - chr4_2:5847158-5847177 Msa0585280:intron 30.0%
CGAATCATCATTATTGTATG+TGG - chr4_2:5847287-5847306 Msa0585280:intron 30.0%
CACTATGTTCATGATAGATT+TGG + chr4_2:5847345-5847364 None:intergenic 30.0%
TGATGACTTTGATTCTGATT+GGG - chr4_2:5847411-5847430 Msa0585280:intron 30.0%
AAATTGTGACGTACATAAGA+AGG + chr4_2:5847514-5847533 None:intergenic 30.0%
ATTCATACTTTCACTCCTTT+GGG + chr4_2:5847557-5847576 None:intergenic 30.0%
TATTCATACTTTCACTCCTT+TGG + chr4_2:5847558-5847577 None:intergenic 30.0%
GAGAGAAGAATGTTAAAACA+AGG - chr4_2:5847671-5847690 Msa0585280:intron 30.0%
TTTATATCCTATGGAAGAAG+AGG - chr4_2:5847717-5847736 Msa0585280:intron 30.0%
!! AAAAGTGTTCAAGATATTCC+AGG - chr4_2:5847759-5847778 Msa0585280:intron 30.0%
CTTTCTCTGCGATAAATATT+TGG + chr4_2:5847801-5847820 None:intergenic 30.0%
TGAAAAGTCACATGATAGTT+AGG + chr4_2:5847880-5847899 None:intergenic 30.0%
TTGTCACATGTTTGAATTTG+TGG - chr4_2:5847927-5847946 Msa0585280:intron 30.0%
TGTCACATGTTTGAATTTGT+GGG - chr4_2:5847928-5847947 Msa0585280:intron 30.0%
TGTGTTGAATGTATTCATCA+AGG - chr4_2:5847966-5847985 Msa0585280:intron 30.0%
GACTTAGAACATATTGAGAA+GGG + chr4_2:5848008-5848027 None:intergenic 30.0%
GCTAAGAAAGACAAAAGTAA+AGG - chr4_2:5848042-5848061 Msa0585280:intron 30.0%
ATATTGCAATTCAAGCTTTG+CGG - chr4_2:5848187-5848206 Msa0585280:intron 30.0%
!! CAAATTTATGGTTTGGTCAT+CGG + chr4_2:5848301-5848320 None:intergenic 30.0%
GATCACACAAATTTATGGTT+TGG + chr4_2:5848308-5848327 None:intergenic 30.0%
! AGTTTGGAATTGCTCAAAAA+AGG - chr4_2:5848378-5848397 Msa0585280:intron 30.0%
! AGTTGTCCAAGTTTAAAACA+TGG - chr4_2:5848447-5848466 Msa0585280:intron 30.0%
!! TACCTTCCATGTTTTAAACT+TGG + chr4_2:5848456-5848475 None:intergenic 30.0%
ATATCACACCTAAAAGACAT+TGG + chr4_2:5848560-5848579 None:intergenic 30.0%
TTTAGGTGTGATATCATCAA+TGG - chr4_2:5848566-5848585 Msa0585280:intron 30.0%
!! TTCTAGTTTGGTTGATTAAG+AGG - chr4_2:5848616-5848635 Msa0585280:intron 30.0%
! TTTGGTTGATTAAGAGGTAT+TGG - chr4_2:5848622-5848641 Msa0585280:CDS 30.0%
TTTGTGTTAATTCCTGATGT+TGG - chr4_2:5848720-5848739 Msa0585280:CDS 30.0%
! GTGATTTCAGATTTTGGATA+TGG - chr4_2:5848812-5848831 Msa0585280:CDS 30.0%
!!! GAGAGTGCTTAGTTTTTTTT+TGG - chr4_2:5848890-5848909 Msa0585280:CDS 30.0%
!!! AGTGCTTAGTTTTTTTTTGG+TGG - chr4_2:5848893-5848912 Msa0585280:CDS 30.0%
!!! GTGCTTAGTTTTTTTTTGGT+GGG - chr4_2:5848894-5848913 Msa0585280:CDS 30.0%
!! GCTTTGGTGATTTTCTTTTT+AGG - chr4_2:5848999-5849018 Msa0585280:CDS 30.0%
TAACAAAGGTAAAACAAAGG+TGG + chr4_2:5849543-5849562 None:intergenic 30.0%
TGAAAGGGATTCTAAATAGT+TGG - chr4_2:5849894-5849913 Msa0585280:intron 30.0%
!!! TTGTTTTTTAATCTGAAGCC+TGG - chr4_2:5850030-5850049 Msa0585280:intron 30.0%
ACTCAAAAACCTCCTAATAA+AGG + chr4_2:5850131-5850150 None:intergenic 30.0%
CGGAAGGAAAAAAAACAAAA+AGG + chr4_2:5850269-5850288 None:intergenic 30.0%
CAATAACTCTCTCATACTTA+TGG + chr4_2:5850889-5850908 None:intergenic 30.0%
CATAAGTATGAGAGAGTTAT+TGG - chr4_2:5850887-5850906 Msa0585280:intron 30.0%
ACATGCTAGCATATACTATA+TGG - chr4_2:5850986-5851005 Msa0585280:intron 30.0%
GGGAATCAAACTCATAAATA+TGG - chr4_2:5851036-5851055 Msa0585280:intron 30.0%
TGACAAGAAAAATGAATGGA+CGG - chr4_2:5851082-5851101 Msa0585280:intron 30.0%
ATGAAATATGAAGGTCATCA+TGG + chr4_2:5851131-5851150 None:intergenic 30.0%
CAACTCTGAATGAAATATGA+AGG + chr4_2:5851140-5851159 None:intergenic 30.0%
! TTTTCTGCTTTATGCTCTTT+AGG - chr4_2:5851179-5851198 Msa0585280:five_prime_UTR 30.0%
TCCATAATCTTCTTCGAAGA+CGG + chr4_2:5845939-5845958 None:intergenic 35.0%
! TGGTCTGAGACATTATAAAC+AGG - chr4_2:5845964-5845983 Msa0585280:intron 35.0%
CATGAACATACCAACATGAT+TGG - chr4_2:5846272-5846291 Msa0585280:intron 35.0%
AATGGTAGTCTATCATTGAG+AGG + chr4_2:5846329-5846348 None:intergenic 35.0%
TCTCAATGATAGACTACCAT+TGG - chr4_2:5846328-5846347 Msa0585280:intron 35.0%
GTAAACTCCATTCCTTCAAA+GGG + chr4_2:5846368-5846387 None:intergenic 35.0%
TGTAAACTCCATTCCTTCAA+AGG + chr4_2:5846369-5846388 None:intergenic 35.0%
GTTACTAAATCAAGAACGGA+TGG - chr4_2:5846461-5846480 Msa0585280:intron 35.0%
TAAATCAAGAACGGATGGTA+GGG - chr4_2:5846466-5846485 Msa0585280:intron 35.0%
AGAGATTCTTTGTTCAAAGG+AGG - chr4_2:5846499-5846518 Msa0585280:intron 35.0%
GAGATTCTTTGTTCAAAGGA+GGG - chr4_2:5846500-5846519 Msa0585280:intron 35.0%
AGATTCTTTGTTCAAAGGAG+GGG - chr4_2:5846501-5846520 Msa0585280:intron 35.0%
TCAAGAAAAGTGAAGATAGG+TGG - chr4_2:5846612-5846631 Msa0585280:intron 35.0%
! ATTGATGTGCTTGATGATTC+TGG - chr4_2:5846740-5846759 Msa0585280:intron 35.0%
AATTGTCAGTTGAAGAATCC+TGG - chr4_2:5846920-5846939 Msa0585280:intron 35.0%
ATTGTCAGTTGAAGAATCCT+GGG - chr4_2:5846921-5846940 Msa0585280:intron 35.0%
TGAAATGCATAGAAAAACCC+AGG + chr4_2:5846941-5846960 None:intergenic 35.0%
!!! ATTGCTTTTGGGTTGATTCA+AGG - chr4_2:5846987-5847006 Msa0585280:intron 35.0%
TGATGATTAACTCCAGTGAA+TGG + chr4_2:5847097-5847116 None:intergenic 35.0%
! CACCAACAGTCTATACTTTT+TGG - chr4_2:5847115-5847134 Msa0585280:intron 35.0%
!!! TTTTTGGTTGTGCTCTGTTA+TGG - chr4_2:5847131-5847150 Msa0585280:intron 35.0%
!! TTTTGGTTGTGCTCTGTTAT+GGG - chr4_2:5847132-5847151 Msa0585280:intron 35.0%
! TAGATTTGGTTCAAGTACTC+TGG + chr4_2:5847331-5847350 None:intergenic 35.0%
AGTCATCAGTAGTGATAGTT+TGG + chr4_2:5847399-5847418 None:intergenic 35.0%
CTGATGACTTTGATTCTGAT+TGG - chr4_2:5847410-5847429 Msa0585280:intron 35.0%
GATGACTTTGATTCTGATTG+GGG - chr4_2:5847412-5847431 Msa0585280:intron 35.0%
ACGAGTTGCAAGATAACAAA+TGG - chr4_2:5847452-5847471 Msa0585280:intron 35.0%
GTTTGTGACACAATATGAGA+AGG - chr4_2:5847621-5847640 Msa0585280:intron 35.0%
TCTTGATGCACGTTATAACA+AGG - chr4_2:5847645-5847664 Msa0585280:intron 35.0%
TTTGCGCACTTTATATCCTA+TGG - chr4_2:5847708-5847727 Msa0585280:intron 35.0%
CGACTTAGAACATATTGAGA+AGG + chr4_2:5848009-5848028 None:intergenic 35.0%
! CTCAATATGTTCTAAGTCGA+TGG - chr4_2:5848010-5848029 Msa0585280:intron 35.0%
! ACAATGAAGTACTTGAAGCT+CGG + chr4_2:5848101-5848120 None:intergenic 35.0%
TGCTGGATCACACAAATTTA+TGG + chr4_2:5848313-5848332 None:intergenic 35.0%
TTTACGAATGAAAGGCAGTT+TGG - chr4_2:5848362-5848381 Msa0585280:intron 35.0%
AATGAAGTGTAGTTATTGCC+AGG - chr4_2:5848404-5848423 Msa0585280:intron 35.0%
ATGAAGTGTAGTTATTGCCA+GGG - chr4_2:5848405-5848424 Msa0585280:intron 35.0%
! TTGGACAACTACGTTTGTTA+TGG + chr4_2:5848437-5848456 None:intergenic 35.0%
! GTCCAAGTTTAAAACATGGA+AGG - chr4_2:5848451-5848470 Msa0585280:intron 35.0%
GTCACTGAATCAACTTAACA+TGG + chr4_2:5848534-5848553 None:intergenic 35.0%
! GTGACAAACCAATGTCTTTT+AGG - chr4_2:5848549-5848568 Msa0585280:intron 35.0%
! CAAACTAGAAGCTTTAACAC+TGG + chr4_2:5848606-5848625 None:intergenic 35.0%
! CAGTGTTAAAGCTTCTAGTT+TGG - chr4_2:5848604-5848623 Msa0585280:intron 35.0%
TCGACAAAACTATCCTTTAG+TGG + chr4_2:5848766-5848785 None:intergenic 35.0%
!!! GATAGTTTTGTCGAACTCAA+AGG - chr4_2:5848772-5848791 Msa0585280:CDS 35.0%
! TCTGGTGTGATTTCAGATTT+TGG - chr4_2:5848806-5848825 Msa0585280:CDS 35.0%
!! AGATTTTGGATATGGTGCTA+GGG - chr4_2:5848820-5848839 Msa0585280:CDS 35.0%
!!! TTTTTTTTTGGTGGGTGCTA+AGG - chr4_2:5848902-5848921 Msa0585280:CDS 35.0%
!!! TTTAGTTTTAGCTGGCTTGT+AGG - chr4_2:5848975-5848994 Msa0585280:CDS 35.0%
CATGAAACCAAATCCATTGA+TGG + chr4_2:5849090-5849109 None:intergenic 35.0%
! GATTTGTCTTTTCCTCATAC+TGG - chr4_2:5849606-5849625 Msa0585280:CDS 35.0%
! TTCCTCATACTGGTTGTATT+TGG - chr4_2:5849616-5849635 Msa0585280:CDS 35.0%
ATCCAAATACAACCAGTATG+AGG + chr4_2:5849621-5849640 None:intergenic 35.0%
GGTCTTAAAAAAGTCAGGAA+AGG - chr4_2:5849755-5849774 Msa0585280:intron 35.0%
! TGTTTAGTAGGAGAGTTTTG+AGG - chr4_2:5850156-5850175 Msa0585280:intron 35.0%
! TTACTAGTTTGTGTGGTGTT+TGG - chr4_2:5850220-5850239 Msa0585280:intron 35.0%
! TACTAGTTTGTGTGGTGTTT+GGG - chr4_2:5850221-5850240 Msa0585280:intron 35.0%
AAAGGTTGAGTGAATATGAG+AGG - chr4_2:5850436-5850455 Msa0585280:intron 35.0%
TCTTTAGCAAACTTCCATGA+AGG - chr4_2:5850609-5850628 Msa0585280:CDS 35.0%
AAAGATATGCAATCAGTCAG+TGG + chr4_2:5850641-5850660 None:intergenic 35.0%
TCTTCTTGCACCATTATTCA+GGG + chr4_2:5850700-5850719 None:intergenic 35.0%
ATCTTCTTGCACCATTATTC+AGG + chr4_2:5850701-5850720 None:intergenic 35.0%
TTCCTCTTTCCATGTTTCAA+AGG + chr4_2:5850777-5850796 None:intergenic 35.0%
TATTCAAGTAGGACAAGAAG+TGG - chr4_2:5850819-5850838 Msa0585280:CDS 35.0%
GACAAGAAAAATGAATGGAC+GGG - chr4_2:5851083-5851102 Msa0585280:intron 35.0%
ACAAGAAAAATGAATGGACG+GGG - chr4_2:5851084-5851103 Msa0585280:intron 35.0%
!! GACAAATCAGGAGTTGATAT+TGG + chr4_2:5851291-5851310 None:intergenic 35.0%
TCGCAGGAACAAAAGAAAGT+AGG + chr4_2:5845867-5845886 None:intergenic 40.0%
ACCGTCTTCGAAGAAGATTA+TGG - chr4_2:5845935-5845954 Msa0585280:intron 40.0%
ATCATCTGAGCCAATCATGT+TGG + chr4_2:5846285-5846304 None:intergenic 40.0%
! ATTCCTTCAAAGGGCTCTAA+GGG + chr4_2:5846359-5846378 None:intergenic 40.0%
CTAAATCAAGAACGGATGGT+AGG - chr4_2:5846465-5846484 Msa0585280:intron 40.0%
GTACATGATCAAACAAGGGT+AGG - chr4_2:5846569-5846588 Msa0585280:intron 40.0%
! GTGCTTGATGATTCTGGTAT+AGG - chr4_2:5846746-5846765 Msa0585280:intron 40.0%
ATTATCAACACCACCACTCT+CGG + chr4_2:5846801-5846820 None:intergenic 40.0%
!! AGTGGTGGTGTTGATAATGT+TGG - chr4_2:5846803-5846822 Msa0585280:intron 40.0%
! GGTTGATTCAAGGTCTAGAA+TGG - chr4_2:5846997-5847016 Msa0585280:intron 40.0%
!! TGAATGGAACAAAGGGCATT+AGG + chr4_2:5847081-5847100 None:intergenic 40.0%
ACTCCAGTGAATGGAACAAA+GGG + chr4_2:5847088-5847107 None:intergenic 40.0%
AACTCCAGTGAATGGAACAA+AGG + chr4_2:5847089-5847108 None:intergenic 40.0%
TTGTTTGGTTGCTACGTACT+TGG - chr4_2:5847173-5847192 Msa0585280:intron 40.0%
ACGTACTTGGTTAGAAGCAA+TGG - chr4_2:5847186-5847205 Msa0585280:intron 40.0%
ACTTGGTTAGAAGCAATGGA+TGG - chr4_2:5847190-5847209 Msa0585280:intron 40.0%
! AGTTGGAAAGGTTTTTCCAG+AGG - chr4_2:5847264-5847283 Msa0585280:intron 40.0%
CAATAATGATGATTCGCCTC+TGG + chr4_2:5847283-5847302 None:intergenic 40.0%
TCTACTCCATTAGAGCAAAG+TGG - chr4_2:5847485-5847504 Msa0585280:intron 40.0%
AGGAATCCACTTTGCTCTAA+TGG + chr4_2:5847494-5847513 None:intergenic 40.0%
! GTACGTCACAATTTTTGTGC+TGG - chr4_2:5847520-5847539 Msa0585280:intron 40.0%
! TGTGTCACAAACTTGCTCAA+TGG + chr4_2:5847613-5847632 None:intergenic 40.0%
GGATATAAAGTGCGCAAAAG+TGG + chr4_2:5847706-5847725 None:intergenic 40.0%
! TTTGAAGCCTCTTCTTCCAT+AGG + chr4_2:5847727-5847746 None:intergenic 40.0%
CAAGATATTCCAGGATGAGT+TGG - chr4_2:5847768-5847787 Msa0585280:intron 40.0%
!! ATATTCCAGGATGAGTTGGT+TGG - chr4_2:5847772-5847791 Msa0585280:intron 40.0%
GCAATTGAAGACCTTGAAGA+AGG - chr4_2:5848069-5848088 Msa0585280:intron 40.0%
TCTCTTGAACTATCTGAGAG+AGG - chr4_2:5848141-5848160 Msa0585280:intron 40.0%
CCTTTCATTCGTAAAGTACG+TGG + chr4_2:5848357-5848376 None:intergenic 40.0%
CCACGTACTTTACGAATGAA+AGG - chr4_2:5848354-5848373 Msa0585280:intron 40.0%
TGTAGTTATTGCCAGGGAAA+AGG - chr4_2:5848411-5848430 Msa0585280:intron 40.0%
!! AGTTTTGTCGAACTCAAAGG+TGG - chr4_2:5848775-5848794 Msa0585280:CDS 40.0%
! CAGATTTTGGATATGGTGCT+AGG - chr4_2:5848819-5848838 Msa0585280:CDS 40.0%
! AGTGGTTCCATCAATGGATT+TGG - chr4_2:5849080-5849099 Msa0585280:CDS 40.0%
AAAAAGTTGCTGAGATGCGT+TGG - chr4_2:5849294-5849313 Msa0585280:CDS 40.0%
TGAGATGCGTTGGAATAACA+TGG - chr4_2:5849304-5849323 Msa0585280:CDS 40.0%
GATGCAAGTGCTCTCATATT+AGG - chr4_2:5849436-5849455 Msa0585280:CDS 40.0%
TGTTATGGCAAGGAATGGAT+AGG - chr4_2:5849482-5849501 Msa0585280:CDS 40.0%
GTTATGGCAAGGAATGGATA+GGG - chr4_2:5849483-5849502 Msa0585280:CDS 40.0%
!!! GAGCTGCCATTTTGTAACAA+AGG + chr4_2:5849557-5849576 None:intergenic 40.0%
! TGGCAGCTCTTGATTGTTTT+AGG - chr4_2:5849568-5849587 Msa0585280:CDS 40.0%
CTATATCTTGTACTCGGTTC+AGG - chr4_2:5849680-5849699 Msa0585280:CDS 40.0%
GGGAAAATGCATTAAATCGC+AGG + chr4_2:5849711-5849730 None:intergenic 40.0%
AACAGCACCAAAACAAGTCT+CGG + chr4_2:5849934-5849953 None:intergenic 40.0%
!!! GACTTGTTTTGGTGCTGTTT+CGG - chr4_2:5849935-5849954 Msa0585280:intron 40.0%
!!! ACTTGTTTTGGTGCTGTTTC+GGG - chr4_2:5849936-5849955 Msa0585280:intron 40.0%
ACAAATCCTTTAGCAGCGAA+TGG + chr4_2:5850069-5850088 None:intergenic 40.0%
TCGCTGCTAAAGGATTTGTA+AGG - chr4_2:5850070-5850089 Msa0585280:intron 40.0%
CGCTGCTAAAGGATTTGTAA+GGG - chr4_2:5850071-5850090 Msa0585280:intron 40.0%
GGAGTTTAACACGTATAGCT+CGG - chr4_2:5850192-5850211 Msa0585280:intron 40.0%
CACCACACAAACTAGTAATG+AGG + chr4_2:5850218-5850237 None:intergenic 40.0%
! ACTAGTTTGTGTGGTGTTTG+GGG - chr4_2:5850222-5850241 Msa0585280:intron 40.0%
GCTAAAGAAGAGAACACATG+CGG + chr4_2:5850597-5850616 None:intergenic 40.0%
GTCAGTGGAAATTACCTTCA+TGG + chr4_2:5850626-5850645 None:intergenic 40.0%
CATGGAAAGAGGAATAAGAC+AGG - chr4_2:5850783-5850802 Msa0585280:CDS 40.0%
! TCTTTAGGAGAACTACACTG+AGG - chr4_2:5851194-5851213 Msa0585280:five_prime_UTR 40.0%
CATACTGATGCAATACTTGG+AGG + chr4_2:5851222-5851241 None:intergenic 40.0%
CTGCATACTGATGCAATACT+TGG + chr4_2:5851225-5851244 None:intergenic 40.0%
! GCAGTGTTCATGAAGACTTT+TGG - chr4_2:5851244-5851263 Msa0585280:five_prime_UTR 40.0%
! GTGTTCATGAAGACTTTTGG+AGG - chr4_2:5851247-5851266 Msa0585280:five_prime_UTR 40.0%
! TTCTTTTGTTCCTGCGAACG+AGG - chr4_2:5845870-5845889 Msa0585280:CDS 45.0%
!! TTCCTTCAAAGGGCTCTAAG+GGG + chr4_2:5846358-5846377 None:intergenic 45.0%
CATTCCTTCAAAGGGCTCTA+AGG + chr4_2:5846360-5846379 None:intergenic 45.0%
! CTTAGAGCCCTTTGAAGGAA+TGG - chr4_2:5846358-5846377 Msa0585280:intron 45.0%
AATACTACACAAGGTACGCG+AGG - chr4_2:5846408-5846427 Msa0585280:intron 45.0%
ACAAGGTACGCGAGGAATAA+AGG - chr4_2:5846416-5846435 Msa0585280:intron 45.0%
AGAACGGATGGTAGGGTAAT+TGG - chr4_2:5846473-5846492 Msa0585280:intron 45.0%
TCAAACAAGGGTAGGATGCA+AGG - chr4_2:5846577-5846596 Msa0585280:intron 45.0%
TCAGTGTTATGTACCGAGAG+TGG - chr4_2:5846785-5846804 Msa0585280:intron 45.0%
GCATTTCAAATGGACGCAGA+AGG - chr4_2:5846953-5846972 Msa0585280:intron 45.0%
ATGCCCTTTGTTCCATTCAC+TGG - chr4_2:5847082-5847101 Msa0585280:CDS 45.0%
CATACTTTCACTCCTTTGGG+TGG + chr4_2:5847554-5847573 None:intergenic 45.0%
TGCAATTCAAGCTTTGCGGA+AGG - chr4_2:5848191-5848210 Msa0585280:intron 45.0%
GTTTGGTCATCGGAGACTTT+AGG + chr4_2:5848291-5848310 None:intergenic 45.0%
AAGTACGTGGACGACCTTTA+GGG + chr4_2:5848344-5848363 None:intergenic 45.0%
AAAGTACGTGGACGACCTTT+AGG + chr4_2:5848345-5848364 None:intergenic 45.0%
!!! GTTTGTTATGGCCTTTTCCC+TGG + chr4_2:5848425-5848444 None:intergenic 45.0%
GTCTGCAACAAACCAACATC+AGG + chr4_2:5848735-5848754 None:intergenic 45.0%
CTATCCTTTAGTGGCAAAGC+AGG + chr4_2:5848757-5848776 None:intergenic 45.0%
TTTGTCGAACTCAAAGGTGG+TGG - chr4_2:5848778-5848797 Msa0585280:CDS 45.0%
TTGTCGAACTCAAAGGTGGT+GGG - chr4_2:5848779-5848798 Msa0585280:CDS 45.0%
TACTTAGCACAGCTTGTCCT+TGG - chr4_2:5849053-5849072 Msa0585280:CDS 45.0%
TGATGGAACCACTTAGTCCA+AGG + chr4_2:5849073-5849092 None:intergenic 45.0%
GGACTAAGTGGTTCCATCAA+TGG - chr4_2:5849074-5849093 Msa0585280:CDS 45.0%
!! GAATTCTGCCTCTAAAGTCG+TGG + chr4_2:5849252-5849271 None:intergenic 45.0%
CAACGATTCTGCATTCTCCA+AGG + chr4_2:5849384-5849403 None:intergenic 45.0%
CTTGGAGAATGCAGAATCGT+TGG - chr4_2:5849382-5849401 Msa0585280:CDS 45.0%
GCTCTCATATTAGGCGAGAA+AGG - chr4_2:5849445-5849464 Msa0585280:CDS 45.0%
TTGCCATAACATCAGCCACA+CGG + chr4_2:5849473-5849492 None:intergenic 45.0%
GCTGATGTTATGGCAAGGAA+TGG - chr4_2:5849477-5849496 Msa0585280:CDS 45.0%
CTAAATAGTTGGCCGACGAT+AGG - chr4_2:5849905-5849924 Msa0585280:intron 45.0%
!! TAGGTGTCCGAGACTTGTTT+TGG - chr4_2:5849924-5849943 Msa0585280:intron 45.0%
TTTGTGTTGAAGCTGCAGGA+AGG - chr4_2:5850007-5850026 Msa0585280:intron 45.0%
AATGGCAGAAAATCAGCACC+AGG + chr4_2:5850051-5850070 None:intergenic 45.0%
TTTCTGCCATTCGCTGCTAA+AGG - chr4_2:5850060-5850079 Msa0585280:intron 45.0%
ACCTCCTAATAAAGGTCCCA+GGG + chr4_2:5850123-5850142 None:intergenic 45.0%
AACCTCCTAATAAAGGTCCC+AGG + chr4_2:5850124-5850143 None:intergenic 45.0%
!!! TAGTAGGAGAGTTTTGAGGC+AGG - chr4_2:5850160-5850179 Msa0585280:intron 45.0%
!!! AGTAGGAGAGTTTTGAGGCA+GGG - chr4_2:5850161-5850180 Msa0585280:intron 45.0%
! GGCCTCATTACTAGTTTGTG+TGG - chr4_2:5850213-5850232 Msa0585280:intron 45.0%
AAAAGGATGCCGCGTATAGA+CGG + chr4_2:5850252-5850271 None:intergenic 45.0%
GTCCACAAGTCCCTGAATAA+TGG - chr4_2:5850687-5850706 Msa0585280:CDS 45.0%
CACCATTATTCAGGGACTTG+TGG + chr4_2:5850692-5850711 None:intergenic 45.0%
CTTCTTCGAAGACGGTTCTC+AGG + chr4_2:5845931-5845950 None:intergenic 50.0%
GTGTTATGTACCGAGAGTGG+TGG - chr4_2:5846788-5846807 Msa0585280:intron 50.0%
ACTTTCACTCCTTTGGGTGG+TGG + chr4_2:5847551-5847570 None:intergenic 50.0%
CTCGGTTTCTGCCTTCTTCA+AGG + chr4_2:5848083-5848102 None:intergenic 50.0%
CAGACCTGCTTTGCCACTAA+AGG - chr4_2:5848750-5848769 Msa0585280:CDS 50.0%
!! TCAAAGGTGGTGGGTTTCTC+TGG - chr4_2:5848788-5848807 Msa0585280:CDS 50.0%
!! TAGCTGGCTTGTAGGTGCTT+TGG - chr4_2:5848983-5849002 Msa0585280:CDS 50.0%
CAGCTTGTCCTTGGACTAAG+TGG - chr4_2:5849062-5849081 Msa0585280:CDS 50.0%
CGGATATGCCACGACTTTAG+AGG - chr4_2:5849241-5849260 Msa0585280:CDS 50.0%
GAACCGTGTGGCTGATGTTA+TGG - chr4_2:5849467-5849486 Msa0585280:CDS 50.0%
GTGTGGCTGATGTTATGGCA+AGG - chr4_2:5849472-5849491 Msa0585280:CDS 50.0%
TGGCTATGCACTCATCTCAG+TGG - chr4_2:5849508-5849527 Msa0585280:CDS 50.0%
CTATGCACTCATCTCAGTGG+TGG - chr4_2:5849511-5849530 Msa0585280:CDS 50.0%
AAGTCTCGGACACCTATCGT+CGG + chr4_2:5849920-5849939 None:intergenic 50.0%
CAACACAAACAGCAGAGCAG+CGG + chr4_2:5849996-5850015 None:intergenic 50.0%
GCTGTTTGTGTTGAAGCTGC+AGG - chr4_2:5850003-5850022 Msa0585280:intron 50.0%
!!! GTAGGAGAGTTTTGAGGCAG+GGG - chr4_2:5850162-5850181 Msa0585280:intron 50.0%
GCAAGACGCACTTAATCTCG+CGG + chr4_2:5850289-5850308 None:intergenic 50.0%
AGAGAACACATGCGGAGACA+GGG + chr4_2:5850589-5850608 None:intergenic 50.0%
AAGAGAACACATGCGGAGAC+AGG + chr4_2:5850590-5850609 None:intergenic 50.0%
CAGGGACTTGTGGACAAGTT+TGG + chr4_2:5850682-5850701 None:intergenic 50.0%
CGGTTCTCAGGTCGTAACAG+CGG + chr4_2:5845919-5845938 None:intergenic 55.0%
CTCCCCTTAGAGCCCTTTGA+AGG - chr4_2:5846353-5846372 Msa0585280:intron 55.0%
CTGGAATGTCCACCACCCAA+AGG - chr4_2:5847539-5847558 Msa0585280:intron 55.0%
GGGATCCAACCAACTCATCC+TGG + chr4_2:5847780-5847799 None:intergenic 55.0%
! AGTCTGACTCGCTTGTGCCT+TGG - chr4_2:5849364-5849383 Msa0585280:CDS 55.0%
TAGGCGAGAAAGGAACCGTG+TGG - chr4_2:5849455-5849474 Msa0585280:CDS 55.0%
GGCAAGGAATGGATAGGGTC+TGG - chr4_2:5849488-5849507 Msa0585280:CDS 55.0%
!! TGTTTGTTGTGCTGCCCTCC+TGG - chr4_2:5850097-5850116 Msa0585280:intron 55.0%
CTAATAAAGGTCCCAGGGCC+AGG + chr4_2:5850118-5850137 None:intergenic 55.0%
CTGGCCCTGGGACCTTTATT+AGG - chr4_2:5850116-5850135 Msa0585280:intron 55.0%
GCCCTGGGACCTTTATTAGG+AGG - chr4_2:5850119-5850138 Msa0585280:intron 55.0%
!!! TTTTGAGGCAGGGGTATGCG+TGG - chr4_2:5850171-5850190 Msa0585280:intron 55.0%
! TGGGGTGTTCCGTCTATACG+CGG - chr4_2:5850240-5850259 Msa0585280:intron 55.0%
GACGCACTTAATCTCGCGGA+AGG + chr4_2:5850285-5850304 None:intergenic 55.0%
GTCGTGTTTGCCTCGTTCGC+AGG + chr4_2:5845883-5845902 None:intergenic 60.0%
!! GGCTCTAAGGGGAGCTCCAA+TGG + chr4_2:5846347-5846366 None:intergenic 60.0%
! CCTTTAGGGACAGCACGTGC+TGG + chr4_2:5848330-5848349 None:intergenic 60.0%
CCAGCACGTGCTGTCCCTAA+AGG - chr4_2:5848327-5848346 Msa0585280:intron 60.0%
! GCTGTTTCGGGCTTCTGCTG+TGG - chr4_2:5849948-5849967 Msa0585280:intron 60.0%
TAAAGGTCCCAGGGCCAGGA+GGG + chr4_2:5850114-5850133 None:intergenic 60.0%
ATAAAGGTCCCAGGGCCAGG+AGG + chr4_2:5850115-5850134 None:intergenic 60.0%
TTCGGGCTTCTGCTGTGGCC+TGG - chr4_2:5849953-5849972 Msa0585280:intron 65.0%
!! CTGCTGTGGCCTGGTGTTGC+AGG - chr4_2:5849962-5849981 Msa0585280:intron 65.0%
!! GTGGCCTGGTGTTGCAGGTC+TGG - chr4_2:5849967-5849986 Msa0585280:intron 65.0%
!! GCCTGGTGTTGCAGGTCTGG+TGG - chr4_2:5849970-5849989 Msa0585280:intron 65.0%
GCCACCAGACCTGCAACACC+AGG + chr4_2:5849974-5849993 None:intergenic 65.0%
TTGTGCTGCCCTCCTGGCCC+TGG - chr4_2:5850103-5850122 Msa0585280:intron 70.0%
TGTGCTGCCCTCCTGGCCCT+GGG - chr4_2:5850104-5850123 Msa0585280:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 5845774 5851320 5845774 ID=Msa0585280;Name=Msa0585280
chr4_2 mRNA 5845774 5851320 5845774 ID=Msa0585280-mRNA-1;Parent=Msa0585280;Name=Msa0585280-mRNA-1;_AED=0.20;_eAED=0.37;_QI=236|0.33|0.14|0.71|0.66|0.71|7|0|591
chr4_2 exon 5845774 5845893 5845774 ID=Msa0585280-mRNA-1:exon:1446;Parent=Msa0585280-mRNA-1
chr4_2 exon 5847008 5847110 5847008 ID=Msa0585280-mRNA-1:exon:1445;Parent=Msa0585280-mRNA-1
chr4_2 exon 5848261 5848341 5848261 ID=Msa0585280-mRNA-1:exon:1444;Parent=Msa0585280-mRNA-1
chr4_2 exon 5848457 5848501 5848457 ID=Msa0585280-mRNA-1:exon:1443;Parent=Msa0585280-mRNA-1
chr4_2 exon 5848622 5849706 5848622 ID=Msa0585280-mRNA-1:exon:1442;Parent=Msa0585280-mRNA-1
chr4_2 exon 5850508 5850873 5850508 ID=Msa0585280-mRNA-1:exon:1441;Parent=Msa0585280-mRNA-1
chr4_2 exon 5851109 5851320 5851109 ID=Msa0585280-mRNA-1:exon:1440;Parent=Msa0585280-mRNA-1
chr4_2 five_prime_UTR 5851109 5851320 5851109 ID=Msa0585280-mRNA-1:five_prime_utr;Parent=Msa0585280-mRNA-1
chr4_2 five_prime_UTR 5850850 5850873 5850850 ID=Msa0585280-mRNA-1:five_prime_utr;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5850508 5850849 5850508 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5848622 5849706 5848622 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5848457 5848501 5848457 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5848261 5848341 5848261 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5847008 5847110 5847008 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
chr4_2 CDS 5845774 5845893 5845774 ID=Msa0585280-mRNA-1:cds;Parent=Msa0585280-mRNA-1
Gene Sequence

>Msa0585280

ATGACAGATCAAGAAATGACAGATATGCATGAACATACCAACATGATTGGCTCAGATGATATGCTTGCAAGTGATGCAGATCCTCTCAATGATAGACTACCATTGGAGCTCCCCTTAGAGCCCTTTGAAGGAATGGAGTTTACATCAATTGAAGATGTAAAAAAATACTACACAAGGTACGCGAGGAATAAAGGTTTTAGCTTTCGTATGGGTCGTGTTACTAAATCAAGAACGGATGGTAGGGTAATTGGTCAAGAGATTCTTTGTTCAAAGGAGGGGTTTAGATCCCAAAAAAATTTGAAAAAAGAAAATGGTAGTCTTATAGTACATGATCAAACAAGGTGCATTCACCAAACTATCACTACTGATGACTTTGATTCTGATTGGGGAGCAATGATAGATAAGTACGAGTTGCAAGATAACAAATGGCTAAAGAAGATCTACTCCATTAGAGCAAAGTGGATTCCTTCTTATGTACGTCACAATTTTTGTGCTGGAATGTCCACCACCCAAAGGAGTGAAAGTATGAATAAATTTTTTAAGGGCTTTTTGAATTCAAGTACTCCATTGAGCAAGTTTGTGACACAATATGAGAAGGCTCTTGATGCACGTTATAACAAGGAAAGAGAGAAGAATGTTAAAACAAGGAATTCAAAACCACTTTTGCGCACTTTATATCCTATGGAAGAAGAGGCTTCAAAAATTTATACACGAAAAGTGTTCAAGATATTCCAGGATGAGTTGGTTGGATCCCAAATATTTATCGCAGAGAAAGTTGAATTTTCTGTTGAAGTTTCCACATACAAGATTCATGAAATTTACAAAGAGAAACCTAACTATCATGTGACTTTTCATGACATTTCAAAAGAAGCAAAATGTAGTTGTCACATGTTTGAATTTGTGGGTATTCTTTGTAGACATGTGTTGAATGTATTCATCAAGGAAAATGTTTATTCTCTCCCTTCTCAATATGTTCTAAGTCGATGGACCATAAATGCTAAGAAAGACAAAAGTAAAGGACTTGCAATTGAAGACCTTGAAGAAGGCAGAAACCGAGCTTCAAGTACTTCATTGTTTAATAGTATTATGGTTGAGTCTCTTGAACTATCTGAGAGAGGTTCACGATCGCAAAAACATCATGATATTGCAATTCAAGCTTTGCGGAAGGCAATCACAAAACTTGATCAATTGGATATTGAAGAGCCAAATGAAGAGTTTGTTAATTCAACGTTTGAAGTTATGCCTAAAGTCTCCGATGACCAAACCATAAATTTGTGTGATCCAGCACGTGCTGTCCCTAAAGGTCGTCCACGTACTTTACGAATGAAAGGCAGTTTGGAATTGCTCAAAAAAGGTTCAATGAAGTGTAGTTATTGCCAGGGAAAAGGCCATAACAAACGTAGTTGTCCAAGTTTAAAACATGGAAGCGTTCAAATTCCAGTGTTAAAGCTTCTAGTTTGGTTGATTAAGAGACCTGCTTTGCCACTAAAGGATAGTTTTGTCGAACTCAAAGGTGGTGGGTTTCTCTGGTGTGATTTCAGATTTTGGATATGGTCTGGTGGCCGCTGCTCTGCTGTTTGTGTTGAAGCTGCAGGAAGGTTGTTTTTTAATCTGAAGCCTGGTGCTGATTTTCTGCCATTCGCTGCTAAAGGATTTGAGAACTACACTGAGGTACCTCCAAGTATTGCATCAGTATGCAGCAGTGTTCATGAAGACTTTTGGAGGCCAACTGAATATTTAATTCCAATATCAACTCCTGATTTGTCCTCGAGATGA
Protein sequence

>Msa0585280

MTDQEMTDMHEHTNMIGSDDMLASDADPLNDRLPLELPLEPFEGMEFTSIEDVKKYYTRYARNKGFSFRMGRVTKSRTDGRVIGQEILCSKEGFRSQKNLKKENGSLIVHDQTRCIHQTITTDDFDSDWGAMIDKYELQDNKWLKKIYSIRAKWIPSYVRHNFCAGMSTTQRSESMNKFFKGFLNSSTPLSKFVTQYEKALDARYNKEREKNVKTRNSKPLLRTLYPMEEEASKIYTRKVFKIFQDELVGSQIFIAEKVEFSVEVSTYKIHEIYKEKPNYHVTFHDISKEAKCSCHMFEFVGILCRHVLNVFIKENVYSLPSQYVLSRWTINAKKDKSKGLAIEDLEEGRNRASSTSLFNSIMVESLELSERGSRSQKHHDIAIQALRKAITKLDQLDIEEPNEEFVNSTFEVMPKVSDDQTINLCDPARAVPKGRPRTLRMKGSLELLKKGSMKCSYCQGKGHNKRSCPSLKHGSVQIPVLKLLVWLIKRPALPLKDSFVELKGGGFLWCDFRFWIWSGGRCSAVCVEAAGRLFFNLKPGADFLPFAAKGFENYTEVPPSIASVCSSVHEDFWRPTEYLIPISTPDLSSR*