Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595880 | GAU50549.1 | 73.805 | 481 | 105 | 4 | 1 | 476 | 1 | 465 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595880 | sp|Q9SZL8|FRS5_ARATH | 39.502 | 281 | 167 | 2 | 111 | 390 | 411 | 689 | 6.07e-61 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0595880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0585280 | Msa0595880 | 0.902822 | 6.544699e-79 | -8.615850e-47 |
| Msa0595880 | Msa0602590 | 0.808870 | 2.504435e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595880 | MtrunA17_Chr1g0202341 | 76.431 | 297 | 70 | 0 | 114 | 410 | 389 | 685 | 1.05e-162 | 480 |
| Msa0595880 | MtrunA17_Chr1g0202341 | 63.717 | 113 | 39 | 1 | 4 | 114 | 12 | 124 | 4.15e-37 | 146 |
| Msa0595880 | MtrunA17_Chr5g0448761 | 41.379 | 290 | 157 | 2 | 114 | 397 | 405 | 687 | 2.79e-70 | 241 |
| Msa0595880 | MtrunA17_Chr5g0448511 | 37.631 | 287 | 172 | 2 | 114 | 397 | 177 | 459 | 9.19e-67 | 226 |
| Msa0595880 | MtrunA17_Chr3g0118611 | 35.473 | 296 | 181 | 3 | 115 | 405 | 284 | 574 | 8.23e-55 | 198 |
| Msa0595880 | MtrunA17_Chr5g0440451 | 35.986 | 289 | 168 | 4 | 115 | 397 | 387 | 664 | 1.26e-53 | 196 |
| Msa0595880 | MtrunA17_Chr3g0080351 | 34.409 | 279 | 172 | 3 | 114 | 390 | 404 | 673 | 5.46e-47 | 176 |
| Msa0595880 | MtrunA17_Chr1g0198761 | 30.352 | 369 | 237 | 6 | 123 | 490 | 405 | 754 | 6.59e-46 | 172 |
| Msa0595880 | MtrunA17_Chr2g0287061 | 34.539 | 304 | 181 | 5 | 97 | 394 | 466 | 757 | 3.57e-43 | 165 |
| Msa0595880 | MtrunA17_Chr1g0207551 | 33.929 | 280 | 172 | 3 | 115 | 391 | 371 | 640 | 2.28e-42 | 162 |
| Msa0595880 | MtrunA17_Chr2g0329031 | 29.226 | 349 | 227 | 6 | 113 | 449 | 342 | 682 | 3.73e-42 | 161 |
| Msa0595880 | MtrunA17_Chr5g0441581 | 38.261 | 230 | 133 | 5 | 116 | 338 | 360 | 587 | 6.92e-39 | 151 |
| Msa0595880 | MtrunA17_Chr2g0291581 | 30.693 | 303 | 189 | 6 | 114 | 404 | 394 | 687 | 1.62e-38 | 150 |
| Msa0595880 | MtrunA17_Chr6g0477261 | 31.871 | 342 | 208 | 10 | 108 | 441 | 216 | 540 | 9.49e-37 | 145 |
| Msa0595880 | MtrunA17_Chr3g0077241 | 70.652 | 92 | 21 | 2 | 6 | 94 | 1 | 89 | 1.89e-35 | 129 |
| Msa0595880 | MtrunA17_Chr2g0296781 | 31.124 | 347 | 214 | 10 | 103 | 441 | 322 | 651 | 3.79e-35 | 140 |
| Msa0595880 | MtrunA17_Chr8g0363841 | 29.762 | 336 | 214 | 6 | 98 | 412 | 334 | 668 | 1.88e-34 | 138 |
| Msa0595880 | MtrunA17_Chr1g0196541 | 35.747 | 221 | 134 | 4 | 116 | 329 | 332 | 551 | 2.29e-33 | 135 |
| Msa0595880 | MtrunA17_Chr2g0294841 | 23.529 | 357 | 253 | 5 | 122 | 469 | 400 | 745 | 6.22e-30 | 125 |
| Msa0595880 | MtrunA17_Chr2g0324011 | 30.469 | 256 | 163 | 6 | 88 | 334 | 319 | 568 | 1.01e-29 | 124 |
| Msa0595880 | MtrunA17_Chr4g0052331 | 57.895 | 95 | 38 | 1 | 1 | 93 | 1 | 95 | 1.07e-29 | 112 |
| Msa0595880 | MtrunA17_Chr6g0458391 | 29.956 | 227 | 158 | 1 | 108 | 334 | 540 | 765 | 8.30e-29 | 121 |
| Msa0595880 | MtrunA17_Chr2g0276841 | 30.714 | 280 | 179 | 7 | 121 | 399 | 421 | 686 | 9.69e-29 | 121 |
| Msa0595880 | MtrunA17_Chr2g0287651 | 29.167 | 240 | 166 | 2 | 96 | 334 | 396 | 632 | 1.83e-27 | 117 |
| Msa0595880 | MtrunA17_Chr1g0203721 | 24.916 | 297 | 221 | 2 | 111 | 407 | 401 | 695 | 1.30e-26 | 115 |
| Msa0595880 | MtrunA17_Chr2g0290391 | 28.938 | 273 | 177 | 5 | 122 | 394 | 411 | 666 | 1.75e-26 | 114 |
| Msa0595880 | MtrunA17_Chr2g0308841 | 27.602 | 221 | 153 | 3 | 114 | 330 | 6 | 223 | 2.19e-25 | 105 |
| Msa0595880 | MtrunA17_Chr3g0082121 | 27.119 | 295 | 205 | 4 | 88 | 378 | 345 | 633 | 1.63e-24 | 108 |
| Msa0595880 | MtrunA17_Chr2g0291591 | 29.940 | 167 | 116 | 1 | 113 | 278 | 396 | 562 | 2.40e-18 | 88.6 |
| Msa0595880 | MtrunA17_Chr1g0203051 | 23.445 | 209 | 159 | 1 | 115 | 322 | 414 | 622 | 6.93e-18 | 87.4 |
| Msa0595880 | MtrunA17_Chr5g0407081 | 89.744 | 39 | 4 | 0 | 538 | 576 | 580 | 618 | 9.34e-15 | 77.8 |
| Msa0595880 | MtrunA17_Chr2g0329361 | 42.029 | 69 | 40 | 0 | 39 | 107 | 59 | 127 | 1.63e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0595880 | AT4G38180.1 | 39.502 | 281 | 167 | 2 | 111 | 390 | 411 | 689 | 6.17e-62 | 218 |
| Msa0595880 | AT4G38170.1 | 32.059 | 340 | 218 | 5 | 115 | 452 | 180 | 508 | 5.11e-55 | 195 |
| Msa0595880 | AT2G27110.3 | 35.357 | 280 | 175 | 2 | 115 | 394 | 217 | 490 | 5.34e-53 | 192 |
| Msa0595880 | AT2G27110.2 | 35.357 | 280 | 175 | 2 | 115 | 394 | 362 | 635 | 1.72e-52 | 192 |
| Msa0595880 | AT2G27110.1 | 35.357 | 280 | 175 | 2 | 115 | 394 | 362 | 635 | 1.72e-52 | 192 |
| Msa0595880 | AT5G18960.2 | 34.694 | 294 | 167 | 4 | 110 | 394 | 507 | 784 | 3.79e-48 | 179 |
| Msa0595880 | AT5G18960.1 | 34.694 | 294 | 167 | 4 | 110 | 394 | 507 | 784 | 3.79e-48 | 179 |
| Msa0595880 | AT3G06250.2 | 32.653 | 294 | 173 | 4 | 110 | 394 | 483 | 760 | 2.46e-46 | 174 |
| Msa0595880 | AT3G06250.1 | 32.653 | 294 | 173 | 4 | 110 | 394 | 483 | 760 | 2.46e-46 | 174 |
| Msa0595880 | AT3G06250.3 | 32.653 | 294 | 173 | 4 | 110 | 394 | 483 | 760 | 2.46e-46 | 174 |
| Msa0595880 | AT4G15090.1 | 31.579 | 304 | 196 | 4 | 114 | 412 | 390 | 686 | 2.91e-44 | 169 |
| Msa0595880 | AT4G15090.5 | 31.579 | 304 | 196 | 4 | 114 | 412 | 390 | 686 | 2.91e-44 | 169 |
| Msa0595880 | AT4G15090.3 | 31.579 | 304 | 196 | 4 | 114 | 412 | 390 | 686 | 2.91e-44 | 169 |
| Msa0595880 | AT4G15090.2 | 31.579 | 304 | 196 | 4 | 114 | 412 | 390 | 686 | 2.91e-44 | 169 |
| Msa0595880 | AT4G15090.4 | 31.579 | 304 | 196 | 4 | 114 | 412 | 390 | 686 | 2.91e-44 | 169 |
| Msa0595880 | AT3G22170.2 | 30.935 | 278 | 184 | 2 | 114 | 391 | 399 | 668 | 3.98e-43 | 165 |
| Msa0595880 | AT3G22170.1 | 30.935 | 278 | 184 | 2 | 114 | 391 | 399 | 668 | 3.98e-43 | 165 |
| Msa0595880 | AT1G76320.3 | 29.643 | 280 | 188 | 3 | 114 | 393 | 327 | 597 | 4.09e-38 | 149 |
| Msa0595880 | AT1G76320.2 | 29.643 | 280 | 188 | 3 | 114 | 393 | 327 | 597 | 4.71e-38 | 150 |
| Msa0595880 | AT1G76320.1 | 29.643 | 280 | 188 | 3 | 114 | 393 | 327 | 597 | 5.13e-38 | 150 |
| Msa0595880 | AT1G76320.4 | 29.643 | 280 | 188 | 3 | 114 | 393 | 327 | 597 | 5.13e-38 | 150 |
| Msa0595880 | AT1G52520.1 | 26.190 | 294 | 206 | 3 | 113 | 398 | 409 | 699 | 1.84e-35 | 142 |
| Msa0595880 | AT4G19990.1 | 29.897 | 291 | 190 | 4 | 108 | 393 | 275 | 556 | 1.42e-34 | 139 |
| Msa0595880 | AT4G19990.5 | 29.897 | 291 | 190 | 4 | 108 | 393 | 332 | 613 | 1.79e-34 | 139 |
| Msa0595880 | AT4G19990.3 | 29.897 | 291 | 190 | 4 | 108 | 393 | 332 | 613 | 1.80e-34 | 139 |
| Msa0595880 | AT4G19990.4 | 29.897 | 291 | 190 | 4 | 108 | 393 | 332 | 613 | 1.80e-34 | 139 |
| Msa0595880 | AT4G19990.7 | 29.897 | 291 | 190 | 4 | 108 | 393 | 346 | 627 | 2.23e-34 | 139 |
| Msa0595880 | AT4G19990.6 | 29.693 | 293 | 192 | 4 | 108 | 395 | 332 | 615 | 2.40e-34 | 139 |
| Msa0595880 | AT4G19990.2 | 29.693 | 293 | 192 | 4 | 108 | 395 | 332 | 615 | 2.40e-34 | 139 |
| Msa0595880 | AT2G32250.2 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 2.68e-34 | 139 |
| Msa0595880 | AT2G32250.4 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 2.68e-34 | 139 |
| Msa0595880 | AT2G32250.7 | 30.000 | 290 | 184 | 7 | 115 | 398 | 294 | 570 | 2.83e-34 | 139 |
| Msa0595880 | AT2G32250.5 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 3.09e-34 | 138 |
| Msa0595880 | AT2G32250.8 | 30.000 | 290 | 184 | 7 | 115 | 398 | 294 | 570 | 3.16e-34 | 138 |
| Msa0595880 | AT2G32250.6 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 3.23e-34 | 139 |
| Msa0595880 | AT2G32250.1 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 3.23e-34 | 139 |
| Msa0595880 | AT2G32250.3 | 30.000 | 290 | 184 | 7 | 115 | 398 | 335 | 611 | 3.23e-34 | 139 |
| Msa0595880 | AT1G80010.1 | 25.478 | 314 | 221 | 6 | 97 | 403 | 418 | 725 | 2.10e-30 | 127 |
| Msa0595880 | AT5G28530.4 | 26.740 | 273 | 181 | 6 | 122 | 388 | 352 | 611 | 3.83e-25 | 110 |
| Msa0595880 | AT5G28530.1 | 26.568 | 271 | 184 | 5 | 122 | 388 | 415 | 674 | 4.55e-25 | 110 |
| Msa0595880 | AT1G10240.2 | 26.690 | 281 | 197 | 5 | 121 | 399 | 399 | 672 | 1.91e-24 | 108 |
| Msa0595880 | AT1G10240.1 | 26.690 | 281 | 197 | 5 | 121 | 399 | 399 | 672 | 1.91e-24 | 108 |
| Msa0595880 | AT5G28530.5 | 26.007 | 273 | 179 | 6 | 122 | 388 | 352 | 607 | 3.55e-24 | 107 |
| Msa0595880 | AT5G28530.3 | 25.830 | 271 | 182 | 5 | 122 | 388 | 415 | 670 | 5.32e-24 | 107 |
| Msa0595880 | AT5G28530.2 | 25.830 | 271 | 182 | 5 | 122 | 388 | 415 | 670 | 5.32e-24 | 107 |
Find 122 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCTGCGATAAATATT+TGG | 0.074822 | 4_2:+25347126 | None:intergenic |
| AGGAATCCACTTTGCTTTAA+TGG | 0.126749 | 4_2:+25347433 | None:intergenic |
| TCTGGTGTGATTTCAGATTT+TGG | 0.165437 | 4_2:-25346118 | Msa0595880:CDS |
| TGCTGGATCACACAAATTTA+TGG | 0.194971 | 4_2:+25346614 | None:intergenic |
| TTTGTCTTTCTTAGCATTTA+TGG | 0.224272 | 4_2:+25346890 | None:intergenic |
| TTCATTGTTTAATAGTATTA+TGG | 0.225254 | 4_2:-25346811 | Msa0595880:CDS |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.261818 | 4_2:+25348567 | None:intergenic |
| GCAATGTTCATGAAGACTTT+TGG | 0.262537 | 4_2:-25343682 | Msa0595880:CDS |
| TATTCATACTTTCACTCCTT+TGG | 0.266644 | 4_2:+25347369 | None:intergenic |
| CTCTTGATGCACGTTATAAC+AGG | 0.293419 | 4_2:-25347280 | Msa0595880:CDS |
| GAAGAAGATTATGGAAGTTT+TGG | 0.293650 | 4_2:-25348980 | Msa0595880:five_prime_UTR |
| AAAGTACGTGGACGACCTTT+AGG | 0.294239 | 4_2:+25346582 | None:intergenic |
| ATTCATACTTTCACTCCTTT+GGG | 0.296462 | 4_2:+25347370 | None:intergenic |
| TTTCTCTGCGATAAATATTT+GGG | 0.322581 | 4_2:+25347127 | None:intergenic |
| CTGATGACTTTGATTCTGAT+TGG | 0.333619 | 4_2:-25347514 | Msa0595880:CDS |
| CTCGGTTTCTGCCTTCTTCA+AGG | 0.341954 | 4_2:+25346844 | None:intergenic |
| AGAACGGATGGTAGGGTAAT+TGG | 0.353327 | 4_2:-25348451 | Msa0595880:CDS |
| TGAAAAGTCACATGATAGTT+AGG | 0.355149 | 4_2:+25347047 | None:intergenic |
| AAGTACGTGGACGACCTTTA+GGG | 0.355782 | 4_2:+25346583 | None:intergenic |
| TTGGACAACTACGTTTGTTA+TGG | 0.355995 | 4_2:+25346490 | None:intergenic |
| GAATTAACAAACTCTTCATT+TGG | 0.362566 | 4_2:+25346675 | None:intergenic |
| TTTACGAATGAAAGGCAGTT+TGG | 0.366602 | 4_2:-25346562 | Msa0595880:CDS |
| GACAAATCAGGAGTTGATAT+TGG | 0.366622 | 4_2:+25343638 | None:intergenic |
| TTGTCACATGTTTGAATTTG+TGG | 0.379138 | 4_2:-25346997 | Msa0595880:CDS |
| GATCACACAAATTTATGGTT+TGG | 0.379156 | 4_2:+25346619 | None:intergenic |
| TGATGACTTTGATTCTGATT+GGG | 0.384063 | 4_2:-25347513 | Msa0595880:CDS |
| ACAAGGTACGCGAGGAATAA+AGG | 0.387113 | 4_2:-25348508 | Msa0595880:CDS |
| AGTCATCAGTAGTGATAGTT+TGG | 0.400979 | 4_2:+25347528 | None:intergenic |
| TCGACAAAACTATCCTTTAG+TGG | 0.405205 | 4_2:+25346161 | None:intergenic |
| CTTCTTCGAAGACGGTTCTC+AGG | 0.416570 | 4_2:+25348996 | None:intergenic |
| AATCACAAAACTTGATCAAT+TGG | 0.417160 | 4_2:-25346709 | Msa0595880:CDS |
| TCAAAGGTAGTGGGTTTCTC+TGG | 0.420582 | 4_2:-25346136 | Msa0595880:CDS |
| GTTTGGTCATCGGAGACTTT+AGG | 0.421530 | 4_2:+25346636 | None:intergenic |
| CTGCATACTGATGCAATACT+TGG | 0.423578 | 4_2:+25343704 | None:intergenic |
| TTTGCGCACTTTATATCCTA+TGG | 0.426133 | 4_2:-25347216 | Msa0595880:CDS |
| CAGACCTGCTTTGCCACTAA+AGG | 0.433153 | 4_2:-25346174 | Msa0595880:CDS |
| AATGAAGTGTAGTTATTGCC+AGG | 0.439936 | 4_2:-25346520 | Msa0595880:CDS |
| CAAATTTATGGTTTGGTCAT+CGG | 0.439940 | 4_2:+25346626 | None:intergenic |
| ACTTTCACTCCTTTGGGTGG+TGG | 0.440297 | 4_2:+25347376 | None:intergenic |
| CATGAACATACCAACATGAT+TGG | 0.442395 | 4_2:-25348652 | Msa0595880:CDS |
| CTATCCTTTAGTGGCAAAGC+AGG | 0.446607 | 4_2:+25346170 | None:intergenic |
| TTTCTGCCATTCGCTGCTAA+AGG | 0.450551 | 4_2:-25344864 | Msa0595880:CDS |
| TGGTCTGAGACATTATAAAC+AGG | 0.455253 | 4_2:-25348960 | Msa0595880:intron |
| ACCGTCTTCGAAGAAGATTA+TGG | 0.460480 | 4_2:-25348989 | Msa0595880:five_prime_UTR |
| GCTGTTTGTGTTGAAGCTGC+AGG | 0.463453 | 4_2:-25344921 | Msa0595880:CDS |
| AAAAGTGTTCAAGATATTCC+AGG | 0.469314 | 4_2:-25347165 | Msa0595880:CDS |
| ATATTGCAATTCAAGCTTTG+CGG | 0.469966 | 4_2:-25346737 | Msa0595880:CDS |
| TATCATCTCGAGGACAAATC+AGG | 0.471407 | 4_2:+25343626 | None:intergenic |
| CTCAATATGTTCTAAGTCGA+TGG | 0.471677 | 4_2:-25346914 | Msa0595880:CDS |
| GTCGTGTTTGCCTCGTTCGC+AGG | 0.474701 | 4_2:+25349044 | None:intergenic |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 4_2:-25348566 | Msa0595880:CDS |
| TGTCACATGTTTGAATTTGT+GGG | 0.478839 | 4_2:-25346996 | Msa0595880:CDS |
| TGTAGTTATTGCCAGGGAAA+AGG | 0.481720 | 4_2:-25346513 | Msa0595880:CDS |
| TTTGAAGCCTCTTCTTCCAT+AGG | 0.482226 | 4_2:+25347200 | None:intergenic |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 4_2:+25348568 | None:intergenic |
| CTCCCCTTAGAGCCCTTTGA+AGG | 0.489876 | 4_2:-25348571 | Msa0595880:CDS |
| GGGATCCAACCAACCCATCC+TGG | 0.493300 | 4_2:+25347147 | None:intergenic |
| TTTGTCGAACTCAAAGGTAG+TGG | 0.494476 | 4_2:-25346146 | Msa0595880:CDS |
| ACGAGTTGCAAGATAACAAA+TGG | 0.498356 | 4_2:-25347472 | Msa0595880:CDS |
| TCAATACAACAAAACTCAAT+CGG | 0.499836 | 4_2:-25349127 | Msa0595880:five_prime_UTR |
| TCAAGAGATTCTTTGTTCAA+AGG | 0.507548 | 4_2:-25348428 | Msa0595880:CDS |
| GGCTCTAAGGGGAGCTCCAA+TGG | 0.508044 | 4_2:+25348580 | None:intergenic |
| TGTAAACTCCATTCCTTCAA+AGG | 0.510474 | 4_2:+25348558 | None:intergenic |
| ATTGGAATTAAATATTCAGT+TGG | 0.514043 | 4_2:+25343656 | None:intergenic |
| TTTATATCCTATGGAAGAAG+AGG | 0.514709 | 4_2:-25347207 | Msa0595880:CDS |
| CAAGATATTCCAGGATGGGT+TGG | 0.516420 | 4_2:-25347156 | Msa0595880:CDS |
| TCCATAATCTTCTTCGAAGA+CGG | 0.517402 | 4_2:+25348988 | None:intergenic |
| ATATTCCAGGATGGGTTGGT+TGG | 0.517410 | 4_2:-25347152 | Msa0595880:CDS |
| TGTGTCACAAACTTGCTCAA+TGG | 0.518813 | 4_2:+25347314 | None:intergenic |
| AGATTCTTTGTTCAAAGGAG+GGG | 0.523644 | 4_2:-25348423 | Msa0595880:CDS |
| GTAAACTCCATTCCTTCAAA+GGG | 0.524520 | 4_2:+25348559 | None:intergenic |
| CATACTTTCACTCCTTTGGG+TGG | 0.526942 | 4_2:+25347373 | None:intergenic |
| GCAATTGAAGACCTTGAAGA+AGG | 0.526963 | 4_2:-25346855 | Msa0595880:CDS |
| GGATATAAAGTGCGCAAAAG+TGG | 0.527400 | 4_2:+25347221 | None:intergenic |
| TCTCAATGATAGACTACCAT+TGG | 0.530176 | 4_2:-25348596 | Msa0595880:CDS |
| GATGACTTTGATTCTGATTG+GGG | 0.531464 | 4_2:-25347512 | Msa0595880:CDS |
| ACAATGAAGTACTTGAAGCT+CGG | 0.532331 | 4_2:+25346826 | None:intergenic |
| AATTTCATGAATCTTGTATG+TGG | 0.536832 | 4_2:+25347082 | None:intergenic |
| TAAATCAAGAACGGATGGTA+GGG | 0.537380 | 4_2:-25348458 | Msa0595880:CDS |
| GCTAAGAAAGACAAAAGTAA+AGG | 0.538204 | 4_2:-25346882 | Msa0595880:CDS |
| CCAGCACGTGCTGTCCCTAA+AGG | 0.538600 | 4_2:-25346597 | Msa0595880:CDS |
| GAGATTCTTTGTTCAAAGGA+GGG | 0.539548 | 4_2:-25348424 | Msa0595880:CDS |
| CCTTTAGGGACAGCACGTGC+TGG | 0.541388 | 4_2:+25346597 | None:intergenic |
| TGTGTTGAATGTATTCATCA+AGG | 0.542961 | 4_2:-25346958 | Msa0595880:CDS |
| AGAGATTCTTTGTTCAAAGG+AGG | 0.550163 | 4_2:-25348425 | Msa0595880:CDS |
| TCGCAGGAACAAAAGAAAGT+AGG | 0.550342 | 4_2:+25349060 | None:intergenic |
| CTAAATCAAGAACGGATGGT+AGG | 0.552075 | 4_2:-25348459 | Msa0595880:CDS |
| TGTTCAAGATATTCCAGGAT+GGG | 0.552224 | 4_2:-25347160 | Msa0595880:CDS |
| GTCCAAGTTTAAAACATGGA+AGG | 0.552269 | 4_2:-25346473 | Msa0595880:intron |
| CATACTGATGCAATACTTGG+AGG | 0.552865 | 4_2:+25343707 | None:intergenic |
| AAATTGTGACGTACATAAGA+AGG | 0.554526 | 4_2:+25347413 | None:intergenic |
| TTGTCGAACTCAAAGGTAGT+GGG | 0.555593 | 4_2:-25346145 | Msa0595880:CDS |
| TGCAATTCAAGCTTTGCGGA+AGG | 0.564681 | 4_2:-25346733 | Msa0595880:CDS |
| GAGAGAAGAATGTTAAAACA+AGG | 0.570551 | 4_2:-25347253 | Msa0595880:CDS |
| CGACTTAGAACATATTGAGA+AGG | 0.572343 | 4_2:+25346918 | None:intergenic |
| TCTACTCCATTAAAGCAAAG+TGG | 0.573767 | 4_2:-25347439 | Msa0595880:CDS |
| ACAAATCCTTTAGCAGCGAA+TGG | 0.574847 | 4_2:+25344858 | None:intergenic |
| ATGAAGTGTAGTTATTGCCA+GGG | 0.575207 | 4_2:-25346519 | Msa0595880:CDS |
| GCCTGGTGTTGCAGGTCTGG+TGG | 0.594525 | 4_2:-25344954 | Msa0595880:intron |
| GACTTAGAACATATTGAGAA+GGG | 0.597241 | 4_2:+25346919 | None:intergenic |
| CCACGTACTTTACGAATGAA+AGG | 0.600807 | 4_2:-25346570 | Msa0595880:CDS |
| ATCATCTGAGCCAATCATGT+TGG | 0.609119 | 4_2:+25348642 | None:intergenic |
| GTTACTAAATCAAGAACGGA+TGG | 0.614185 | 4_2:-25348463 | Msa0595880:CDS |
| GTGTTCAAGATATTCCAGGA+TGG | 0.614458 | 4_2:-25347161 | Msa0595880:CDS |
| TTTGTGTTGAAGCTGCAGGA+AGG | 0.615745 | 4_2:-25344917 | Msa0595880:CDS |
| CAACACAAACAGCAGAGCAG+CGG | 0.616751 | 4_2:+25344931 | None:intergenic |
| AGTTGTCCAAGTTTAAAACA+TGG | 0.618004 | 4_2:-25346477 | Msa0595880:CDS |
| CCTTTCATTCGTAAAGTACG+TGG | 0.618728 | 4_2:+25346570 | None:intergenic |
| TTATAGTACATGATCAAACA+AGG | 0.619283 | 4_2:-25348360 | Msa0595880:CDS |
| AATGGTAGTCTATCATTGAG+AGG | 0.621900 | 4_2:+25348598 | None:intergenic |
| AATGGCAGAAAATCAGCACC+AGG | 0.625686 | 4_2:+25344876 | None:intergenic |
| CTGGAATGTCCACCACCCAA+AGG | 0.639739 | 4_2:-25347385 | Msa0595880:CDS |
| TCGTGTTACTAAATCAAGAA+CGG | 0.641576 | 4_2:-25348467 | Msa0595880:CDS |
| GTTTGTGACACAATATGAGA+AGG | 0.645219 | 4_2:-25347303 | Msa0595880:CDS |
| TCTCTTGAACTATCTGAGAG+AGG | 0.647890 | 4_2:-25346783 | Msa0595880:CDS |
| AATACTACACAAGGTACGCG+AGG | 0.651596 | 4_2:-25348516 | Msa0595880:CDS |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.687755 | 4_2:+25348569 | None:intergenic |
| TCTTGATGCACGTTATAACA+GGG | 0.689599 | 4_2:-25347279 | Msa0595880:CDS |
| GGCACAGCAGTATCATCTCG+AGG | 0.693105 | 4_2:+25343616 | None:intergenic |
| CGGTTCTCAGGTCGTAACAG+CGG | 0.694705 | 4_2:+25349008 | None:intergenic |
| TATAGTACATGATCAAACAA+GGG | 0.707069 | 4_2:-25348359 | Msa0595880:intron |
| TCTTTAGGAGAACTACACTG+AGG | 0.805453 | 4_2:-25343732 | Msa0595880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAAATAAATTAAA+AGG | - | chr4_2:25348270-25348289 | Msa0595880:intron | 0.0% |
| !!! | TTCTTTTTTCAAATTTTTTT+GGG | + | chr4_2:25344388-25344407 | None:intergenic | 10.0% |
| !!! | TTTCTTTTTTCAAATTTTTT+TGG | + | chr4_2:25344389-25344408 | None:intergenic | 10.0% |
| !! | AAAAATTTGAAAAAAGAAAA+TGG | - | chr4_2:25344390-25344409 | Msa0595880:intron | 10.0% |
| !!! | AAGTATGAATAAATTTTTTA+AGG | - | chr4_2:25345421-25345440 | Msa0595880:intron | 10.0% |
| !!! | AGTATGAATAAATTTTTTAA+GGG | - | chr4_2:25345422-25345441 | Msa0595880:intron | 10.0% |
| !! | TGATCAAAAAAATAATATAA+TGG | - | chr4_2:25347588-25347607 | Msa0595880:intron | 10.0% |
| !! | AATAATTAATAACATCTTGT+TGG | + | chr4_2:25344689-25344708 | None:intergenic | 15.0% |
| !!! | TATTTATTTGTTAAGTATGT+TGG | + | chr4_2:25344912-25344931 | None:intergenic | 15.0% |
| !! | TTCATTGTTTAATAGTATTA+TGG | - | chr4_2:25345967-25345986 | Msa0595880:intron | 15.0% |
| !!! | TATTGGTATTATTATTTTGT+TGG | - | chr4_2:25346493-25346512 | Msa0595880:CDS | 15.0% |
| !!! | ATATTATTTTTTTGATCAAG+CGG | + | chr4_2:25347586-25347605 | None:intergenic | 15.0% |
| !!! | TTTTATTATTACAATGTGAA+AGG | - | chr4_2:25347732-25347751 | Msa0595880:intron | 15.0% |
| !! | TTTATTATTACAATGTGAAA+GGG | - | chr4_2:25347733-25347752 | Msa0595880:intron | 15.0% |
| !! | TTCATATTTAAACATGTTTG+TGG | - | chr4_2:25343955-25343974 | Msa0595880:intron | 20.0% |
| !!! | TTAACTTGCTTTTCTAAATA+TGG | - | chr4_2:25344028-25344047 | Msa0595880:intron | 20.0% |
| !! | ATGTAAAAAAATACTACACA+AGG | - | chr4_2:25344253-25344272 | Msa0595880:intron | 20.0% |
| !!! | AATAAGTTTTTTTTGCACTT+TGG | + | chr4_2:25344577-25344596 | None:intergenic | 20.0% |
| !! | AGACAAAAACAATTAGAAAA+TGG | - | chr4_2:25344720-25344739 | Msa0595880:intron | 20.0% |
| !!! | TAAATTAGCAAATTGCTTTT+GGG | - | chr4_2:25344830-25344849 | Msa0595880:intron | 20.0% |
| !! | AATTCACACTAGAAATATTA+AGG | + | chr4_2:25346707-25346726 | None:intergenic | 20.0% |
| !!! | TATTATTTTTTTGATCAAGC+GGG | + | chr4_2:25347585-25347604 | None:intergenic | 20.0% |
| !!! | AGAGAATTTATTGATAACTT+AGG | - | chr4_2:25347641-25347660 | Msa0595880:intron | 20.0% |
| !!! | TTTGAGTTTTTTTGTTTAGT+AGG | - | chr4_2:25347998-25348017 | Msa0595880:intron | 20.0% |
| !!! | TGTCATTTCAAAAAAAAAGT+TGG | - | chr4_2:25348186-25348205 | Msa0595880:intron | 20.0% |
| !! | TTCAATTTCAGATTCAAATT+TGG | - | chr4_2:25348353-25348372 | Msa0595880:intron | 20.0% |
| !! | TCAATTTCAGATTCAAATTT+GGG | - | chr4_2:25348354-25348373 | Msa0595880:intron | 20.0% |
| !! | CATTTGGTTATAATTCTATT+TGG | + | chr4_2:25348790-25348809 | None:intergenic | 20.0% |
| !! | ACTCTGAATGAAAATAAAAA+GGG | - | chr4_2:25348868-25348887 | Msa0595880:intron | 20.0% |
| !! | AAAATGACAAGAAAAATGAA+TGG | - | chr4_2:25348930-25348949 | Msa0595880:intron | 20.0% |
| !! | ATTGGAATTAAATATTCAGT+TGG | + | chr4_2:25349125-25349144 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTGTTGTATTGA+GGG | + | chr4_2:25343651-25343670 | None:intergenic | 25.0% |
| ! | TCAATACAACAAAACTCAAT+CGG | - | chr4_2:25343651-25343670 | Msa0595880:CDS | 25.0% |
| !!! | CTTTCTCTTTTTTCAATTGA+AGG | - | chr4_2:25343676-25343695 | Msa0595880:CDS | 25.0% |
| !!! | AGTCTCCAAATATTTTTGTT+TGG | - | chr4_2:25343923-25343942 | Msa0595880:intron | 25.0% |
| ! | CATTGCCAAACAAAAATATT+TGG | + | chr4_2:25343931-25343950 | None:intergenic | 25.0% |
| !! | GAATTTTTATTCAGCATAAC+AGG | - | chr4_2:25344061-25344080 | Msa0595880:intron | 25.0% |
| ! | TTATAGTACATGATCAAACA+AGG | - | chr4_2:25344418-25344437 | Msa0595880:intron | 25.0% |
| ! | TATAGTACATGATCAAACAA+GGG | - | chr4_2:25344419-25344438 | Msa0595880:intron | 25.0% |
| ! | ATATCAAGAAAAGTGAAGAT+AGG | - | chr4_2:25344463-25344482 | Msa0595880:intron | 25.0% |
| !! | TAAGAAACTGTGAACTTTTT+GGG | + | chr4_2:25344536-25344555 | None:intergenic | 25.0% |
| !! | GTTTTTCTATGCATTTCAAA+TGG | - | chr4_2:25344797-25344816 | Msa0595880:intron | 25.0% |
| !! | GTAAATTAGCAAATTGCTTT+TGG | - | chr4_2:25344829-25344848 | Msa0595880:intron | 25.0% |
| !! | AGAATGGCTTACAAATATTT+TGG | - | chr4_2:25344867-25344886 | Msa0595880:CDS | 25.0% |
| !!! | TTACAAATATTTTGGTGATG+TGG | - | chr4_2:25344875-25344894 | Msa0595880:CDS | 25.0% |
| !! | TGATCAGTGATAATAGTTTT+AGG | + | chr4_2:25345077-25345096 | None:intergenic | 25.0% |
| ! | TTTCTCTGCGATAAATATTT+GGG | + | chr4_2:25345654-25345673 | None:intergenic | 25.0% |
| ! | AATTTCATGAATCTTGTATG+TGG | + | chr4_2:25345699-25345718 | None:intergenic | 25.0% |
| ! | TTTGTCTTTCTTAGCATTTA+TGG | + | chr4_2:25345891-25345910 | None:intergenic | 25.0% |
| ! | AATCACAAAACTTGATCAAT+TGG | - | chr4_2:25346069-25346088 | Msa0595880:intron | 25.0% |
| ! | GAATTAACAAACTCTTCATT+TGG | + | chr4_2:25346106-25346125 | None:intergenic | 25.0% |
| ! | AAATATCAATTGGTACTATC+AGG | + | chr4_2:25346790-25346809 | None:intergenic | 25.0% |
| ! | CCTACAAATCAAATATCAAT+TGG | + | chr4_2:25346800-25346819 | None:intergenic | 25.0% |
| !!! | CCAATTGATATTTGATTTGT+AGG | - | chr4_2:25346797-25346816 | Msa0595880:CDS | 25.0% |
| !!! | GTTTTTACTTTAGTTTTAGC+TGG | - | chr4_2:25346821-25346840 | Msa0595880:CDS | 25.0% |
| ! | ATAAAAGTTGTGCAAAAGAT+CGG | - | chr4_2:25347075-25347094 | Msa0595880:CDS | 25.0% |
| !! | ATGGATTGAAACAAATTCTT+TGG | - | chr4_2:25347177-25347196 | Msa0595880:CDS | 25.0% |
| ! | TTGTAACAAAGGTAAAACAA+AGG | + | chr4_2:25347400-25347419 | None:intergenic | 25.0% |
| !! | GTTTTACCTTTGTTACAAAA+TGG | - | chr4_2:25347402-25347421 | Msa0595880:CDS | 25.0% |
| !! | GTATTTCTATATCTTGTACT+CGG | - | chr4_2:25347528-25347547 | Msa0595880:CDS | 25.0% |
| !! | ATAATGGTCTTAAAAAAGTC+AGG | - | chr4_2:25347604-25347623 | Msa0595880:intron | 25.0% |
| ! | GGTATAAGTTAAAAGTAACA+TGG | - | chr4_2:25347662-25347681 | Msa0595880:intron | 25.0% |
| ! | GAAAACATGTACTTTATTGT+CGG | + | chr4_2:25348212-25348231 | None:intergenic | 25.0% |
| ! | CAATTTCAGATTCAAATTTG+GGG | - | chr4_2:25348355-25348374 | Msa0595880:intron | 25.0% |
| ! | AGAAAAATGATTGTTAGCTA+TGG | + | chr4_2:25348415-25348434 | None:intergenic | 25.0% |
| ! | ATGTATTTGACTATTCAAGT+AGG | - | chr4_2:25348660-25348679 | Msa0595880:CDS | 25.0% |
| !!! | TTTGATGATGTTCAATCATT+TGG | + | chr4_2:25348806-25348825 | None:intergenic | 25.0% |
| ! | GACTCTGAATGAAAATAAAA+AGG | - | chr4_2:25348867-25348886 | Msa0595880:intron | 25.0% |
| !!! | GATTGAGTTTTGTTGTATTG+AGG | + | chr4_2:25343652-25343671 | None:intergenic | 30.0% |
| ! | GAAGAAGATTATGGAAGTTT+TGG | - | chr4_2:25343798-25343817 | Msa0595880:intron | 30.0% |
| TAACCACATCTTCAATTACT+TGG | - | chr4_2:25343846-25343865 | Msa0595880:intron | 30.0% | |
| AAACCAAGTAATTGAAGATG+TGG | + | chr4_2:25343852-25343871 | None:intergenic | 30.0% | |
| !!! | TAAAGGTTTTAGCTTTCGTA+TGG | - | chr4_2:25344287-25344306 | Msa0595880:intron | 30.0% |
| !!! | AAAGGTTTTAGCTTTCGTAT+GGG | - | chr4_2:25344288-25344307 | Msa0595880:intron | 30.0% |
| ! | TCGTGTTACTAAATCAAGAA+CGG | - | chr4_2:25344311-25344330 | Msa0595880:intron | 30.0% |
| TCAAGAGATTCTTTGTTCAA+AGG | - | chr4_2:25344350-25344369 | Msa0595880:intron | 30.0% | |
| ! | AAGAAACTGTGAACTTTTTG+GGG | + | chr4_2:25344535-25344554 | None:intergenic | 30.0% |
| ! | CTAAGAAACTGTGAACTTTT+TGG | + | chr4_2:25344537-25344556 | None:intergenic | 30.0% |
| !!! | ACACTGATGCTATTTTACTA+GGG | + | chr4_2:25344626-25344645 | None:intergenic | 30.0% |
| !!! | AACACTGATGCTATTTTACT+AGG | + | chr4_2:25344627-25344646 | None:intergenic | 30.0% |
| ! | AACCAAAAAGTATAGACTGT+TGG | + | chr4_2:25344974-25344993 | None:intergenic | 30.0% |
| !!! | AAACTGAAGAGAGTTTTGTT+TGG | - | chr4_2:25345012-25345031 | Msa0595880:intron | 30.0% |
| !! | ACTTCTATTTCTAATGCAGT+TGG | - | chr4_2:25345101-25345120 | Msa0595880:intron | 30.0% |
| ! | TATTTCTAATGCAGTTGGAA+AGG | - | chr4_2:25345106-25345125 | Msa0595880:intron | 30.0% |
| CGAATCATCATTATTGTATG+TGG | - | chr4_2:25345141-25345160 | Msa0595880:intron | 30.0% | |
| CACTATGTTCATGATAGATT+TGG | + | chr4_2:25345199-25345218 | None:intergenic | 30.0% | |
| TGATGACTTTGATTCTGATT+GGG | - | chr4_2:25345265-25345284 | Msa0595880:intron | 30.0% | |
| AAATTGTGACGTACATAAGA+AGG | + | chr4_2:25345368-25345387 | None:intergenic | 30.0% | |
| ATTCATACTTTCACTCCTTT+GGG | + | chr4_2:25345411-25345430 | None:intergenic | 30.0% | |
| TATTCATACTTTCACTCCTT+TGG | + | chr4_2:25345412-25345431 | None:intergenic | 30.0% | |
| GAGAGAAGAATGTTAAAACA+AGG | - | chr4_2:25345525-25345544 | Msa0595880:intron | 30.0% | |
| TTTATATCCTATGGAAGAAG+AGG | - | chr4_2:25345571-25345590 | Msa0595880:intron | 30.0% | |
| !! | AAAAGTGTTCAAGATATTCC+AGG | - | chr4_2:25345613-25345632 | Msa0595880:intron | 30.0% |
| CTTTCTCTGCGATAAATATT+TGG | + | chr4_2:25345655-25345674 | None:intergenic | 30.0% | |
| TGAAAAGTCACATGATAGTT+AGG | + | chr4_2:25345734-25345753 | None:intergenic | 30.0% | |
| TTGTCACATGTTTGAATTTG+TGG | - | chr4_2:25345781-25345800 | Msa0595880:intron | 30.0% | |
| TGTCACATGTTTGAATTTGT+GGG | - | chr4_2:25345782-25345801 | Msa0595880:intron | 30.0% | |
| TGTGTTGAATGTATTCATCA+AGG | - | chr4_2:25345820-25345839 | Msa0595880:intron | 30.0% | |
| GACTTAGAACATATTGAGAA+GGG | + | chr4_2:25345862-25345881 | None:intergenic | 30.0% | |
| GCTAAGAAAGACAAAAGTAA+AGG | - | chr4_2:25345896-25345915 | Msa0595880:intron | 30.0% | |
| ATATTGCAATTCAAGCTTTG+CGG | - | chr4_2:25346041-25346060 | Msa0595880:intron | 30.0% | |
| !! | CAAATTTATGGTTTGGTCAT+CGG | + | chr4_2:25346155-25346174 | None:intergenic | 30.0% |
| GATCACACAAATTTATGGTT+TGG | + | chr4_2:25346162-25346181 | None:intergenic | 30.0% | |
| ! | AGTTTGGAATTGCTCAAAAA+AGG | - | chr4_2:25346232-25346251 | Msa0595880:intron | 30.0% |
| ! | AGTTGTCCAAGTTTAAAACA+TGG | - | chr4_2:25346301-25346320 | Msa0595880:intron | 30.0% |
| !! | TACCTTCCATGTTTTAAACT+TGG | + | chr4_2:25346310-25346329 | None:intergenic | 30.0% |
| ATATCACACCTAAAAGACAT+TGG | + | chr4_2:25346414-25346433 | None:intergenic | 30.0% | |
| TTTAGGTGTGATATCATCAA+TGG | - | chr4_2:25346420-25346439 | Msa0595880:intron | 30.0% | |
| !! | TTCTAGTTTGGTTGATTAAG+AGG | - | chr4_2:25346470-25346489 | Msa0595880:intron | 30.0% |
| ! | TTTGGTTGATTAAGAGGTAT+TGG | - | chr4_2:25346476-25346495 | Msa0595880:CDS | 30.0% |
| TTTGTGTTAATTCCTGATGT+TGG | - | chr4_2:25346574-25346593 | Msa0595880:CDS | 30.0% | |
| ! | GTGATTTCAGATTTTGGATA+TGG | - | chr4_2:25346666-25346685 | Msa0595880:CDS | 30.0% |
| !!! | GAGAGTGCTTAGTTTTTTTT+TGG | - | chr4_2:25346744-25346763 | Msa0595880:CDS | 30.0% |
| !!! | AGTGCTTAGTTTTTTTTTGG+TGG | - | chr4_2:25346747-25346766 | Msa0595880:CDS | 30.0% |
| !!! | GTGCTTAGTTTTTTTTTGGT+GGG | - | chr4_2:25346748-25346767 | Msa0595880:CDS | 30.0% |
| !! | GCTTTGGTGATTTTCTTTTT+AGG | - | chr4_2:25346853-25346872 | Msa0595880:CDS | 30.0% |
| TAACAAAGGTAAAACAAAGG+TGG | + | chr4_2:25347397-25347416 | None:intergenic | 30.0% | |
| TGAAAGGGATTCTAAATAGT+TGG | - | chr4_2:25347748-25347767 | Msa0595880:intron | 30.0% | |
| !!! | TTGTTTTTTAATCTGAAGCC+TGG | - | chr4_2:25347884-25347903 | Msa0595880:intron | 30.0% |
| ACTCAAAAACCTCCTAATAA+AGG | + | chr4_2:25347985-25348004 | None:intergenic | 30.0% | |
| CGGAAGGAAAAAAAACAAAA+AGG | + | chr4_2:25348123-25348142 | None:intergenic | 30.0% | |
| TCTTCTTACACCATTATTCA+GGG | + | chr4_2:25348552-25348571 | None:intergenic | 30.0% | |
| ATCTTCTTACACCATTATTC+AGG | + | chr4_2:25348553-25348572 | None:intergenic | 30.0% | |
| CAATAACTCTCTCATACTTA+TGG | + | chr4_2:25348741-25348760 | None:intergenic | 30.0% | |
| CATAAGTATGAGAGAGTTAT+TGG | - | chr4_2:25348739-25348758 | Msa0595880:intron | 30.0% | |
| ACATGCTAGCATATACTATA+TGG | - | chr4_2:25348838-25348857 | Msa0595880:intron | 30.0% | |
| GGGAATCAAACTCATAAATA+TGG | - | chr4_2:25348888-25348907 | Msa0595880:intron | 30.0% | |
| TGACAAGAAAAATGAATGGA+CGG | - | chr4_2:25348934-25348953 | Msa0595880:intron | 30.0% | |
| ATGAAATATGAAGGTCATCA+TGG | + | chr4_2:25348983-25349002 | None:intergenic | 30.0% | |
| CAACTCTGAATGAAATATGA+AGG | + | chr4_2:25348992-25349011 | None:intergenic | 30.0% | |
| ! | TTTTCTGCTTTATGCTCTTT+AGG | - | chr4_2:25349031-25349050 | Msa0595880:five_prime_UTR | 30.0% |
| TCCATAATCTTCTTCGAAGA+CGG | + | chr4_2:25343793-25343812 | None:intergenic | 35.0% | |
| ! | TGGTCTGAGACATTATAAAC+AGG | - | chr4_2:25343818-25343837 | Msa0595880:intron | 35.0% |
| CATGAACATACCAACATGAT+TGG | - | chr4_2:25344126-25344145 | Msa0595880:intron | 35.0% | |
| AATGGTAGTCTATCATTGAG+AGG | + | chr4_2:25344183-25344202 | None:intergenic | 35.0% | |
| TCTCAATGATAGACTACCAT+TGG | - | chr4_2:25344182-25344201 | Msa0595880:intron | 35.0% | |
| GTAAACTCCATTCCTTCAAA+GGG | + | chr4_2:25344222-25344241 | None:intergenic | 35.0% | |
| TGTAAACTCCATTCCTTCAA+AGG | + | chr4_2:25344223-25344242 | None:intergenic | 35.0% | |
| GTTACTAAATCAAGAACGGA+TGG | - | chr4_2:25344315-25344334 | Msa0595880:intron | 35.0% | |
| TAAATCAAGAACGGATGGTA+GGG | - | chr4_2:25344320-25344339 | Msa0595880:intron | 35.0% | |
| AGAGATTCTTTGTTCAAAGG+AGG | - | chr4_2:25344353-25344372 | Msa0595880:intron | 35.0% | |
| GAGATTCTTTGTTCAAAGGA+GGG | - | chr4_2:25344354-25344373 | Msa0595880:intron | 35.0% | |
| AGATTCTTTGTTCAAAGGAG+GGG | - | chr4_2:25344355-25344374 | Msa0595880:intron | 35.0% | |
| TCAAGAAAAGTGAAGATAGG+TGG | - | chr4_2:25344466-25344485 | Msa0595880:intron | 35.0% | |
| ! | ATTGATGTGCTTGATGATTC+TGG | - | chr4_2:25344594-25344613 | Msa0595880:intron | 35.0% |
| AATTGTCAGTTGAAGAATCC+TGG | - | chr4_2:25344774-25344793 | Msa0595880:intron | 35.0% | |
| ATTGTCAGTTGAAGAATCCT+GGG | - | chr4_2:25344775-25344794 | Msa0595880:intron | 35.0% | |
| TGAAATGCATAGAAAAACCC+AGG | + | chr4_2:25344795-25344814 | None:intergenic | 35.0% | |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | - | chr4_2:25344841-25344860 | Msa0595880:intron | 35.0% |
| TGATGATTAACTCCAGTGAA+TGG | + | chr4_2:25344951-25344970 | None:intergenic | 35.0% | |
| ! | CACCAACAGTCTATACTTTT+TGG | - | chr4_2:25344969-25344988 | Msa0595880:intron | 35.0% |
| !!! | TTTTTGGTTGTGCTCTGTTA+TGG | - | chr4_2:25344985-25345004 | Msa0595880:intron | 35.0% |
| !! | TTTTGGTTGTGCTCTGTTAT+GGG | - | chr4_2:25344986-25345005 | Msa0595880:intron | 35.0% |
| ! | TAGATTTGGTTCAAGTACTC+TGG | + | chr4_2:25345185-25345204 | None:intergenic | 35.0% |
| AGTCATCAGTAGTGATAGTT+TGG | + | chr4_2:25345253-25345272 | None:intergenic | 35.0% | |
| CTGATGACTTTGATTCTGAT+TGG | - | chr4_2:25345264-25345283 | Msa0595880:intron | 35.0% | |
| GATGACTTTGATTCTGATTG+GGG | - | chr4_2:25345266-25345285 | Msa0595880:intron | 35.0% | |
| ACGAGTTGCAAGATAACAAA+TGG | - | chr4_2:25345306-25345325 | Msa0595880:intron | 35.0% | |
| TCTACTCCATTAAAGCAAAG+TGG | - | chr4_2:25345339-25345358 | Msa0595880:intron | 35.0% | |
| AGGAATCCACTTTGCTTTAA+TGG | + | chr4_2:25345348-25345367 | None:intergenic | 35.0% | |
| GTTTGTGACACAATATGAGA+AGG | - | chr4_2:25345475-25345494 | Msa0595880:intron | 35.0% | |
| TCTTGATGCACGTTATAACA+GGG | - | chr4_2:25345499-25345518 | Msa0595880:intron | 35.0% | |
| TTTGCGCACTTTATATCCTA+TGG | - | chr4_2:25345562-25345581 | Msa0595880:intron | 35.0% | |
| TGTTCAAGATATTCCAGGAT+GGG | - | chr4_2:25345618-25345637 | Msa0595880:intron | 35.0% | |
| CGACTTAGAACATATTGAGA+AGG | + | chr4_2:25345863-25345882 | None:intergenic | 35.0% | |
| ! | CTCAATATGTTCTAAGTCGA+TGG | - | chr4_2:25345864-25345883 | Msa0595880:intron | 35.0% |
| ! | ACAATGAAGTACTTGAAGCT+CGG | + | chr4_2:25345955-25345974 | None:intergenic | 35.0% |
| TGCTGGATCACACAAATTTA+TGG | + | chr4_2:25346167-25346186 | None:intergenic | 35.0% | |
| TTTACGAATGAAAGGCAGTT+TGG | - | chr4_2:25346216-25346235 | Msa0595880:intron | 35.0% | |
| AATGAAGTGTAGTTATTGCC+AGG | - | chr4_2:25346258-25346277 | Msa0595880:intron | 35.0% | |
| ATGAAGTGTAGTTATTGCCA+GGG | - | chr4_2:25346259-25346278 | Msa0595880:intron | 35.0% | |
| ! | TTGGACAACTACGTTTGTTA+TGG | + | chr4_2:25346291-25346310 | None:intergenic | 35.0% |
| ! | GTCCAAGTTTAAAACATGGA+AGG | - | chr4_2:25346305-25346324 | Msa0595880:intron | 35.0% |
| GTCACTGAATCAACTTAACA+TGG | + | chr4_2:25346388-25346407 | None:intergenic | 35.0% | |
| ! | GTGACAAACCAATGTCTTTT+AGG | - | chr4_2:25346403-25346422 | Msa0595880:intron | 35.0% |
| ! | CAAACTAGAAGCTTTAACAC+TGG | + | chr4_2:25346460-25346479 | None:intergenic | 35.0% |
| ! | CAGTGTTAAAGCTTCTAGTT+TGG | - | chr4_2:25346458-25346477 | Msa0595880:intron | 35.0% |
| TCGACAAAACTATCCTTTAG+TGG | + | chr4_2:25346620-25346639 | None:intergenic | 35.0% | |
| !!! | GATAGTTTTGTCGAACTCAA+AGG | - | chr4_2:25346626-25346645 | Msa0595880:CDS | 35.0% |
| ! | TCTGGTGTGATTTCAGATTT+TGG | - | chr4_2:25346660-25346679 | Msa0595880:CDS | 35.0% |
| !! | AGATTTTGGATATGGTGCTA+GGG | - | chr4_2:25346674-25346693 | Msa0595880:CDS | 35.0% |
| !!! | TTTTTTTTTGGTGGGTGCTA+AGG | - | chr4_2:25346756-25346775 | Msa0595880:CDS | 35.0% |
| !!! | TTTAGTTTTAGCTGGCTTGT+AGG | - | chr4_2:25346829-25346848 | Msa0595880:CDS | 35.0% |
| CATGAAACCAAATCCATTGA+TGG | + | chr4_2:25346944-25346963 | None:intergenic | 35.0% | |
| ! | GATTTGTCTTTTCCTCATAC+TGG | - | chr4_2:25347460-25347479 | Msa0595880:CDS | 35.0% |
| ! | TTCCTCATACTGGTTGTATT+TGG | - | chr4_2:25347470-25347489 | Msa0595880:CDS | 35.0% |
| ATCCAAATACAACCAGTATG+AGG | + | chr4_2:25347475-25347494 | None:intergenic | 35.0% | |
| GGTCTTAAAAAAGTCAGGAA+AGG | - | chr4_2:25347609-25347628 | Msa0595880:intron | 35.0% | |
| ! | TGTTTAGTAGGAGAGTTTTG+AGG | - | chr4_2:25348010-25348029 | Msa0595880:intron | 35.0% |
| ! | TTACTAGTTTGTGTGGTGTT+TGG | - | chr4_2:25348074-25348093 | Msa0595880:intron | 35.0% |
| ! | TACTAGTTTGTGTGGTGTTT+GGG | - | chr4_2:25348075-25348094 | Msa0595880:intron | 35.0% |
| AAAGGTTGAGTGAATATGAG+AGG | - | chr4_2:25348288-25348307 | Msa0595880:intron | 35.0% | |
| TCTTTAGCAAACTTCCATGA+AGG | - | chr4_2:25348461-25348480 | Msa0595880:CDS | 35.0% | |
| AAAGATATGCAATCAGTCAG+TGG | + | chr4_2:25348493-25348512 | None:intergenic | 35.0% | |
| GGACTTCTCTAACTTTGATT+GGG | + | chr4_2:25348607-25348626 | None:intergenic | 35.0% | |
| TATTCAAGTAGGACAAGAAG+TGG | - | chr4_2:25348671-25348690 | Msa0595880:CDS | 35.0% | |
| GACAAGAAAAATGAATGGAC+GGG | - | chr4_2:25348935-25348954 | Msa0595880:intron | 35.0% | |
| ACAAGAAAAATGAATGGACG+GGG | - | chr4_2:25348936-25348955 | Msa0595880:intron | 35.0% | |
| ! | GCAATGTTCATGAAGACTTT+TGG | - | chr4_2:25349096-25349115 | Msa0595880:five_prime_UTR | 35.0% |
| ! | ATGTTCATGAAGACTTTTGG+AGG | - | chr4_2:25349099-25349118 | Msa0595880:five_prime_UTR | 35.0% |
| !! | GACAAATCAGGAGTTGATAT+TGG | + | chr4_2:25349143-25349162 | None:intergenic | 35.0% |
| TCGCAGGAACAAAAGAAAGT+AGG | + | chr4_2:25343721-25343740 | None:intergenic | 40.0% | |
| ACCGTCTTCGAAGAAGATTA+TGG | - | chr4_2:25343789-25343808 | Msa0595880:intron | 40.0% | |
| ATCATCTGAGCCAATCATGT+TGG | + | chr4_2:25344139-25344158 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr4_2:25344213-25344232 | None:intergenic | 40.0% |
| CTAAATCAAGAACGGATGGT+AGG | - | chr4_2:25344319-25344338 | Msa0595880:intron | 40.0% | |
| GTACATGATCAAACAAGGGT+AGG | - | chr4_2:25344423-25344442 | Msa0595880:intron | 40.0% | |
| ! | GTGCTTGATGATTCTGGTAT+AGG | - | chr4_2:25344600-25344619 | Msa0595880:intron | 40.0% |
| ATTATCAACACCACCACTCT+CGG | + | chr4_2:25344655-25344674 | None:intergenic | 40.0% | |
| !! | AGTGGTGGTGTTGATAATGT+TGG | - | chr4_2:25344657-25344676 | Msa0595880:intron | 40.0% |
| ! | GGTTGATTCAAGGTCTAGAA+TGG | - | chr4_2:25344851-25344870 | Msa0595880:intron | 40.0% |
| !! | TGAATGGAACAAAGGGCATT+AGG | + | chr4_2:25344935-25344954 | None:intergenic | 40.0% |
| ACTCCAGTGAATGGAACAAA+GGG | + | chr4_2:25344942-25344961 | None:intergenic | 40.0% | |
| AACTCCAGTGAATGGAACAA+AGG | + | chr4_2:25344943-25344962 | None:intergenic | 40.0% | |
| TTGTTTGGTTGCTACGTACT+TGG | - | chr4_2:25345027-25345046 | Msa0595880:intron | 40.0% | |
| ACGTACTTGGTTAGAAGCAA+TGG | - | chr4_2:25345040-25345059 | Msa0595880:intron | 40.0% | |
| ACTTGGTTAGAAGCAATGGA+TGG | - | chr4_2:25345044-25345063 | Msa0595880:intron | 40.0% | |
| ! | AGTTGGAAAGGTTTTTCCAG+AGG | - | chr4_2:25345118-25345137 | Msa0595880:intron | 40.0% |
| CAATAATGATGATTCGCCTC+TGG | + | chr4_2:25345137-25345156 | None:intergenic | 40.0% | |
| ! | GTACGTCACAATTTTTGTGC+TGG | - | chr4_2:25345374-25345393 | Msa0595880:intron | 40.0% |
| ! | TGTGTCACAAACTTGCTCAA+TGG | + | chr4_2:25345467-25345486 | None:intergenic | 40.0% |
| CTCTTGATGCACGTTATAAC+AGG | - | chr4_2:25345498-25345517 | Msa0595880:intron | 40.0% | |
| GGATATAAAGTGCGCAAAAG+TGG | + | chr4_2:25345560-25345579 | None:intergenic | 40.0% | |
| ! | TTTGAAGCCTCTTCTTCCAT+AGG | + | chr4_2:25345581-25345600 | None:intergenic | 40.0% |
| GTGTTCAAGATATTCCAGGA+TGG | - | chr4_2:25345617-25345636 | Msa0595880:intron | 40.0% | |
| GCAATTGAAGACCTTGAAGA+AGG | - | chr4_2:25345923-25345942 | Msa0595880:intron | 40.0% | |
| TCTCTTGAACTATCTGAGAG+AGG | - | chr4_2:25345995-25346014 | Msa0595880:intron | 40.0% | |
| CCTTTCATTCGTAAAGTACG+TGG | + | chr4_2:25346211-25346230 | None:intergenic | 40.0% | |
| CCACGTACTTTACGAATGAA+AGG | - | chr4_2:25346208-25346227 | Msa0595880:intron | 40.0% | |
| TGTAGTTATTGCCAGGGAAA+AGG | - | chr4_2:25346265-25346284 | Msa0595880:intron | 40.0% | |
| TTTGTCGAACTCAAAGGTAG+TGG | - | chr4_2:25346632-25346651 | Msa0595880:CDS | 40.0% | |
| TTGTCGAACTCAAAGGTAGT+GGG | - | chr4_2:25346633-25346652 | Msa0595880:CDS | 40.0% | |
| ! | CAGATTTTGGATATGGTGCT+AGG | - | chr4_2:25346673-25346692 | Msa0595880:CDS | 40.0% |
| ! | AGTGGTTCCATCAATGGATT+TGG | - | chr4_2:25346934-25346953 | Msa0595880:CDS | 40.0% |
| AAAAAGTTGCTGAGATGCGT+TGG | - | chr4_2:25347148-25347167 | Msa0595880:CDS | 40.0% | |
| TGAGATGCGTTGGAATAACA+TGG | - | chr4_2:25347158-25347177 | Msa0595880:CDS | 40.0% | |
| GATGCAAGTGCTCTCATATT+AGG | - | chr4_2:25347290-25347309 | Msa0595880:CDS | 40.0% | |
| TGTTATGGCAAGGAATGGAT+AGG | - | chr4_2:25347336-25347355 | Msa0595880:CDS | 40.0% | |
| GTTATGGCAAGGAATGGATA+GGG | - | chr4_2:25347337-25347356 | Msa0595880:CDS | 40.0% | |
| !!! | GAGCTGCCATTTTGTAACAA+AGG | + | chr4_2:25347411-25347430 | None:intergenic | 40.0% |
| ! | TGGCAGCTCTTGATTGTTTT+AGG | - | chr4_2:25347422-25347441 | Msa0595880:CDS | 40.0% |
| CTATATCTTGTACTCGGTTC+AGG | - | chr4_2:25347534-25347553 | Msa0595880:CDS | 40.0% | |
| GGGAAAATGCATTAAATCGC+AGG | + | chr4_2:25347565-25347584 | None:intergenic | 40.0% | |
| CTAAATAGTTGGCCGACAAT+AGG | - | chr4_2:25347759-25347778 | Msa0595880:intron | 40.0% | |
| AACAGCACCAAAACAAGTCT+CGG | + | chr4_2:25347788-25347807 | None:intergenic | 40.0% | |
| !!! | GACTTGTTTTGGTGCTGTTT+CGG | - | chr4_2:25347789-25347808 | Msa0595880:intron | 40.0% |
| !!! | ACTTGTTTTGGTGCTGTTTC+GGG | - | chr4_2:25347790-25347809 | Msa0595880:intron | 40.0% |
| ACAAATCCTTTAGCAGCGAA+TGG | + | chr4_2:25347923-25347942 | None:intergenic | 40.0% | |
| TCGCTGCTAAAGGATTTGTA+AGG | - | chr4_2:25347924-25347943 | Msa0595880:intron | 40.0% | |
| CGCTGCTAAAGGATTTGTAA+GGG | - | chr4_2:25347925-25347944 | Msa0595880:intron | 40.0% | |
| GGAGTTTAACACGTATAGCT+CGG | - | chr4_2:25348046-25348065 | Msa0595880:intron | 40.0% | |
| CACCACACAAACTAGTAATG+AGG | + | chr4_2:25348072-25348091 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGTGTGGTGTTTG+GGG | - | chr4_2:25348076-25348095 | Msa0595880:intron | 40.0% |
| GCTAAAGAAGAGAACACATG+CGG | + | chr4_2:25348449-25348468 | None:intergenic | 40.0% | |
| GTCAGTGGAAATTACCTTCA+TGG | + | chr4_2:25348478-25348497 | None:intergenic | 40.0% | |
| GGGACTTCTCTAACTTTGAT+TGG | + | chr4_2:25348608-25348627 | None:intergenic | 40.0% | |
| CATGGAAAGAGGAATAAGAC+AGG | - | chr4_2:25348635-25348654 | Msa0595880:CDS | 40.0% | |
| ! | TCTTTAGGAGAACTACACTG+AGG | - | chr4_2:25349046-25349065 | Msa0595880:five_prime_UTR | 40.0% |
| CATACTGATGCAATACTTGG+AGG | + | chr4_2:25349074-25349093 | None:intergenic | 40.0% | |
| CTGCATACTGATGCAATACT+TGG | + | chr4_2:25349077-25349096 | None:intergenic | 40.0% | |
| ! | TTCTTTTGTTCCTGCGAACG+AGG | - | chr4_2:25343724-25343743 | Msa0595880:CDS | 45.0% |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr4_2:25344212-25344231 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr4_2:25344214-25344233 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr4_2:25344212-25344231 | Msa0595880:intron | 45.0% |
| AATACTACACAAGGTACGCG+AGG | - | chr4_2:25344262-25344281 | Msa0595880:intron | 45.0% | |
| ACAAGGTACGCGAGGAATAA+AGG | - | chr4_2:25344270-25344289 | Msa0595880:intron | 45.0% | |
| AGAACGGATGGTAGGGTAAT+TGG | - | chr4_2:25344327-25344346 | Msa0595880:intron | 45.0% | |
| TCAAACAAGGGTAGGATGCA+AGG | - | chr4_2:25344431-25344450 | Msa0595880:intron | 45.0% | |
| TCAGTGTTATGTACCGAGAG+TGG | - | chr4_2:25344639-25344658 | Msa0595880:intron | 45.0% | |
| GCATTTCAAATGGACGCAGA+AGG | - | chr4_2:25344807-25344826 | Msa0595880:intron | 45.0% | |
| ATGCCCTTTGTTCCATTCAC+TGG | - | chr4_2:25344936-25344955 | Msa0595880:CDS | 45.0% | |
| CATACTTTCACTCCTTTGGG+TGG | + | chr4_2:25345408-25345427 | None:intergenic | 45.0% | |
| CAAGATATTCCAGGATGGGT+TGG | - | chr4_2:25345622-25345641 | Msa0595880:intron | 45.0% | |
| !! | ATATTCCAGGATGGGTTGGT+TGG | - | chr4_2:25345626-25345645 | Msa0595880:intron | 45.0% |
| TGCAATTCAAGCTTTGCGGA+AGG | - | chr4_2:25346045-25346064 | Msa0595880:intron | 45.0% | |
| GTTTGGTCATCGGAGACTTT+AGG | + | chr4_2:25346145-25346164 | None:intergenic | 45.0% | |
| AAGTACGTGGACGACCTTTA+GGG | + | chr4_2:25346198-25346217 | None:intergenic | 45.0% | |
| AAAGTACGTGGACGACCTTT+AGG | + | chr4_2:25346199-25346218 | None:intergenic | 45.0% | |
| !!! | GTTTGTTATGGCCTTTTCCC+TGG | + | chr4_2:25346279-25346298 | None:intergenic | 45.0% |
| GTCTGCAACAAACCAACATC+AGG | + | chr4_2:25346589-25346608 | None:intergenic | 45.0% | |
| CTATCCTTTAGTGGCAAAGC+AGG | + | chr4_2:25346611-25346630 | None:intergenic | 45.0% | |
| !! | TCAAAGGTAGTGGGTTTCTC+TGG | - | chr4_2:25346642-25346661 | Msa0595880:CDS | 45.0% |
| TACTTAGCACAGCTTGTCCT+TGG | - | chr4_2:25346907-25346926 | Msa0595880:CDS | 45.0% | |
| TGATGGAACCACTTAGTCCA+AGG | + | chr4_2:25346927-25346946 | None:intergenic | 45.0% | |
| GGACTAAGTGGTTCCATCAA+TGG | - | chr4_2:25346928-25346947 | Msa0595880:CDS | 45.0% | |
| !! | GAATTCTGCCTCTAAAGTCG+TGG | + | chr4_2:25347106-25347125 | None:intergenic | 45.0% |
| CAACGATTCTGCATTCTCCA+AGG | + | chr4_2:25347238-25347257 | None:intergenic | 45.0% | |
| CTTGGAGAATGCAGAATCGT+TGG | - | chr4_2:25347236-25347255 | Msa0595880:CDS | 45.0% | |
| TGCTCTCATATTAGGCGAGA+AGG | - | chr4_2:25347298-25347317 | Msa0595880:CDS | 45.0% | |
| GCTCTCATATTAGGCGAGAA+GGG | - | chr4_2:25347299-25347318 | Msa0595880:CDS | 45.0% | |
| TTGCCATAACATCAGCCACA+CGG | + | chr4_2:25347327-25347346 | None:intergenic | 45.0% | |
| GCTGATGTTATGGCAAGGAA+TGG | - | chr4_2:25347331-25347350 | Msa0595880:CDS | 45.0% | |
| AAGTCTCGGACACCTATTGT+CGG | + | chr4_2:25347774-25347793 | None:intergenic | 45.0% | |
| !! | TAGGTGTCCGAGACTTGTTT+TGG | - | chr4_2:25347778-25347797 | Msa0595880:intron | 45.0% |
| TTTGTGTTGAAGCTGCAGGA+AGG | - | chr4_2:25347861-25347880 | Msa0595880:intron | 45.0% | |
| AATGGCAGAAAATCAGCACC+AGG | + | chr4_2:25347905-25347924 | None:intergenic | 45.0% | |
| TTTCTGCCATTCGCTGCTAA+AGG | - | chr4_2:25347914-25347933 | Msa0595880:intron | 45.0% | |
| ACCTCCTAATAAAGGTCCCA+GGG | + | chr4_2:25347977-25347996 | None:intergenic | 45.0% | |
| AACCTCCTAATAAAGGTCCC+AGG | + | chr4_2:25347978-25347997 | None:intergenic | 45.0% | |
| !!! | TAGTAGGAGAGTTTTGAGGC+AGG | - | chr4_2:25348014-25348033 | Msa0595880:intron | 45.0% |
| !!! | AGTAGGAGAGTTTTGAGGCA+GGG | - | chr4_2:25348015-25348034 | Msa0595880:intron | 45.0% |
| ! | GGCCTCATTACTAGTTTGTG+TGG | - | chr4_2:25348067-25348086 | Msa0595880:intron | 45.0% |
| AAAAGGATGCCGCGTATAGA+CGG | + | chr4_2:25348106-25348125 | None:intergenic | 45.0% | |
| GTCCACAAGTCCCTGAATAA+TGG | - | chr4_2:25348539-25348558 | Msa0595880:CDS | 45.0% | |
| CACCATTATTCAGGGACTTG+TGG | + | chr4_2:25348544-25348563 | None:intergenic | 45.0% | |
| CTTCTTCGAAGACGGTTCTC+AGG | + | chr4_2:25343785-25343804 | None:intergenic | 50.0% | |
| GTGTTATGTACCGAGAGTGG+TGG | - | chr4_2:25344642-25344661 | Msa0595880:intron | 50.0% | |
| ACTTTCACTCCTTTGGGTGG+TGG | + | chr4_2:25345405-25345424 | None:intergenic | 50.0% | |
| CTCGGTTTCTGCCTTCTTCA+AGG | + | chr4_2:25345937-25345956 | None:intergenic | 50.0% | |
| CAGACCTGCTTTGCCACTAA+AGG | - | chr4_2:25346604-25346623 | Msa0595880:CDS | 50.0% | |
| !! | TAGCTGGCTTGTAGGTGCTT+TGG | - | chr4_2:25346837-25346856 | Msa0595880:CDS | 50.0% |
| CAGCTTGTCCTTGGACTAAG+TGG | - | chr4_2:25346916-25346935 | Msa0595880:CDS | 50.0% | |
| CGGATATGCCACGACTTTAG+AGG | - | chr4_2:25347095-25347114 | Msa0595880:CDS | 50.0% | |
| GAACCGTGTGGCTGATGTTA+TGG | - | chr4_2:25347321-25347340 | Msa0595880:CDS | 50.0% | |
| GTGTGGCTGATGTTATGGCA+AGG | - | chr4_2:25347326-25347345 | Msa0595880:CDS | 50.0% | |
| TGGCTATGCACTCATCTCAG+TGG | - | chr4_2:25347362-25347381 | Msa0595880:CDS | 50.0% | |
| CTATGCACTCATCTCAGTGG+TGG | - | chr4_2:25347365-25347384 | Msa0595880:CDS | 50.0% | |
| CAACACAAACAGCAGAGCAG+CGG | + | chr4_2:25347850-25347869 | None:intergenic | 50.0% | |
| GCTGTTTGTGTTGAAGCTGC+AGG | - | chr4_2:25347857-25347876 | Msa0595880:intron | 50.0% | |
| !!! | GTAGGAGAGTTTTGAGGCAG+GGG | - | chr4_2:25348016-25348035 | Msa0595880:intron | 50.0% |
| GCAAGACGCACTTAATCTCG+CGG | + | chr4_2:25348143-25348162 | None:intergenic | 50.0% | |
| AGAGAACACATGCGGAGACA+GGG | + | chr4_2:25348441-25348460 | None:intergenic | 50.0% | |
| AAGAGAACACATGCGGAGAC+AGG | + | chr4_2:25348442-25348461 | None:intergenic | 50.0% | |
| CAGGGACTTGTGGACAAGTT+TGG | + | chr4_2:25348534-25348553 | None:intergenic | 50.0% | |
| CGGTTCTCAGGTCGTAACAG+CGG | + | chr4_2:25343773-25343792 | None:intergenic | 55.0% | |
| CTCCCCTTAGAGCCCTTTGA+AGG | - | chr4_2:25344207-25344226 | Msa0595880:intron | 55.0% | |
| CTGGAATGTCCACCACCCAA+AGG | - | chr4_2:25345393-25345412 | Msa0595880:intron | 55.0% | |
| ! | AGTCTGACTCGCTTGTGCCT+TGG | - | chr4_2:25347218-25347237 | Msa0595880:CDS | 55.0% |
| GGCAAGGAATGGATAGGGTC+TGG | - | chr4_2:25347342-25347361 | Msa0595880:CDS | 55.0% | |
| !! | TGTTTGTTGTGCTGCCCTCC+TGG | - | chr4_2:25347951-25347970 | Msa0595880:intron | 55.0% |
| CTAATAAAGGTCCCAGGGCC+AGG | + | chr4_2:25347972-25347991 | None:intergenic | 55.0% | |
| CTGGCCCTGGGACCTTTATT+AGG | - | chr4_2:25347970-25347989 | Msa0595880:intron | 55.0% | |
| GCCCTGGGACCTTTATTAGG+AGG | - | chr4_2:25347973-25347992 | Msa0595880:intron | 55.0% | |
| !!! | TTTTGAGGCAGGGGTATGCG+TGG | - | chr4_2:25348025-25348044 | Msa0595880:intron | 55.0% |
| ! | TGGGGTGTTCCGTCTATACG+CGG | - | chr4_2:25348094-25348113 | Msa0595880:intron | 55.0% |
| GACGCACTTAATCTCGCGGA+AGG | + | chr4_2:25348139-25348158 | None:intergenic | 55.0% | |
| GTCGTGTTTGCCTCGTTCGC+AGG | + | chr4_2:25343737-25343756 | None:intergenic | 60.0% | |
| !! | GGCTCTAAGGGGAGCTCCAA+TGG | + | chr4_2:25344201-25344220 | None:intergenic | 60.0% |
| GGGATCCAACCAACCCATCC+TGG | + | chr4_2:25345634-25345653 | None:intergenic | 60.0% | |
| ! | CCTTTAGGGACAGCACGTGC+TGG | + | chr4_2:25346184-25346203 | None:intergenic | 60.0% |
| CCAGCACGTGCTGTCCCTAA+AGG | - | chr4_2:25346181-25346200 | Msa0595880:intron | 60.0% | |
| TAGGCGAGAAGGGAACCGTG+TGG | - | chr4_2:25347309-25347328 | Msa0595880:CDS | 60.0% | |
| ! | GCTGTTTCGGGCTTCTGCTG+TGG | - | chr4_2:25347802-25347821 | Msa0595880:intron | 60.0% |
| TAAAGGTCCCAGGGCCAGGA+GGG | + | chr4_2:25347968-25347987 | None:intergenic | 60.0% | |
| ATAAAGGTCCCAGGGCCAGG+AGG | + | chr4_2:25347969-25347988 | None:intergenic | 60.0% | |
| TTCGGGCTTCTGCTGTGGCC+TGG | - | chr4_2:25347807-25347826 | Msa0595880:intron | 65.0% | |
| !! | CTGCTGTGGCCTGGTGTTGC+AGG | - | chr4_2:25347816-25347835 | Msa0595880:intron | 65.0% |
| !! | GTGGCCTGGTGTTGCAGGTC+TGG | - | chr4_2:25347821-25347840 | Msa0595880:intron | 65.0% |
| !! | GCCTGGTGTTGCAGGTCTGG+TGG | - | chr4_2:25347824-25347843 | Msa0595880:intron | 65.0% |
| GCCACCAGACCTGCAACACC+AGG | + | chr4_2:25347828-25347847 | None:intergenic | 65.0% | |
| TTGTGCTGCCCTCCTGGCCC+TGG | - | chr4_2:25347957-25347976 | Msa0595880:intron | 70.0% | |
| TGTGCTGCCCTCCTGGCCCT+GGG | - | chr4_2:25347958-25347977 | Msa0595880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 25343628 | 25349172 | 25343628 | ID=Msa0595880;Name=Msa0595880 |
| chr4_2 | mRNA | 25343628 | 25349172 | 25343628 | ID=Msa0595880-mRNA-1;Parent=Msa0595880;Name=Msa0595880-mRNA-1;_AED=0.31;_eAED=0.45;_QI=236|0.2|0.16|0.66|0.6|0.66|6|0|576 |
| chr4_2 | exon | 25343628 | 25343747 | 25343628 | ID=Msa0595880-mRNA-1:exon:6823;Parent=Msa0595880-mRNA-1 |
| chr4_2 | exon | 25344860 | 25344962 | 25344860 | ID=Msa0595880-mRNA-1:exon:6822;Parent=Msa0595880-mRNA-1 |
| chr4_2 | exon | 25346113 | 25346193 | 25346113 | ID=Msa0595880-mRNA-1:exon:6821;Parent=Msa0595880-mRNA-1 |
| chr4_2 | exon | 25346474 | 25347558 | 25346474 | ID=Msa0595880-mRNA-1:exon:6820;Parent=Msa0595880-mRNA-1 |
| chr4_2 | exon | 25348360 | 25348725 | 25348360 | ID=Msa0595880-mRNA-1:exon:6819;Parent=Msa0595880-mRNA-1 |
| chr4_2 | exon | 25348961 | 25349172 | 25348961 | ID=Msa0595880-mRNA-1:exon:6818;Parent=Msa0595880-mRNA-1 |
| chr4_2 | five_prime_UTR | 25348961 | 25349172 | 25348961 | ID=Msa0595880-mRNA-1:five_prime_utr;Parent=Msa0595880-mRNA-1 |
| chr4_2 | five_prime_UTR | 25348702 | 25348725 | 25348702 | ID=Msa0595880-mRNA-1:five_prime_utr;Parent=Msa0595880-mRNA-1 |
| chr4_2 | CDS | 25348360 | 25348701 | 25348360 | ID=Msa0595880-mRNA-1:cds;Parent=Msa0595880-mRNA-1 |
| chr4_2 | CDS | 25346474 | 25347558 | 25346474 | ID=Msa0595880-mRNA-1:cds;Parent=Msa0595880-mRNA-1 |
| chr4_2 | CDS | 25346113 | 25346193 | 25346113 | ID=Msa0595880-mRNA-1:cds;Parent=Msa0595880-mRNA-1 |
| chr4_2 | CDS | 25344860 | 25344962 | 25344860 | ID=Msa0595880-mRNA-1:cds;Parent=Msa0595880-mRNA-1 |
| chr4_2 | CDS | 25343628 | 25343747 | 25343628 | ID=Msa0595880-mRNA-1:cds;Parent=Msa0595880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
