AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586580 MtrunA17_Chr4g0003441 90.519 443 0 2 1 421 63 485 0.0 771
Msa0586580 MtrunA17_Chr1g0149251 87.097 341 22 1 103 421 1 341 0.0 606
Msa0586580 MtrunA17_Chr3g0137901 90.960 177 16 0 245 421 1 177 1.61e-115 335
Msa0586580 MtrunA17_Chr3g0137891 92.308 143 11 0 103 245 1 143 7.46e-94 282
Msa0586580 MtrunA17_Chr7g0247191 34.292 452 239 10 1 421 97 521 1.34e-68 226
Msa0586580 MtrunA17_Chr7g0247181 34.071 452 240 10 1 421 87 511 5.12e-68 225
Msa0586580 MtrunA17_Chr7g0247221 34.266 429 228 9 16 421 117 514 2.85e-67 223
Msa0586580 MtrunA17_Chr2g0299681 35.567 388 202 8 52 416 47 409 8.76e-63 208
Msa0586580 MtrunA17_Chr2g0329931 35.677 384 199 8 56 416 51 409 4.17e-61 204
Msa0586580 MtrunA17_Chr4g0070981 33.890 419 228 9 21 416 17 409 1.16e-60 203
Msa0586580 MtrunA17_Chr8g0342861 34.794 388 205 8 52 416 47 409 7.45e-60 201
Msa0586580 MtrunA17_Chr2g0297261 32.274 409 223 12 31 416 25 402 2.12e-57 194
Msa0586580 MtrunA17_Chr7g0236841 30.905 398 212 10 47 414 11 375 2.31e-46 166
Msa0586580 MtrunA17_Chr2g0330401 31.522 368 212 11 54 392 91 447 1.32e-45 165
Msa0586580 MtrunA17_Chr6g0483491 30.402 398 214 10 47 414 11 375 1.65e-45 163
Msa0586580 MtrunA17_Chr4g0076491 32.292 384 193 6 52 390 293 654 1.88e-45 167
Msa0586580 MtrunA17_Chr3g0107851 29.894 378 206 9 47 388 118 472 2.30e-45 165
Msa0586580 MtrunA17_Chr4g0063551 33.333 351 188 8 85 391 159 507 1.54e-43 162
Msa0586580 MtrunA17_Chr3g0121351 32.703 370 200 9 91 416 170 534 2.05e-43 160
Msa0586580 MtrunA17_Chr6g0449741 31.771 384 193 7 52 390 255 614 5.95e-43 160
Msa0586580 MtrunA17_Chr1g0176041 32.951 349 191 8 85 392 173 519 2.21e-42 158
Msa0586580 MtrunA17_Chr2g0310581 31.395 344 203 9 91 406 78 416 4.50e-42 155
Msa0586580 MtrunA17_Chr1g0193491 29.315 365 210 11 91 414 139 496 7.64e-40 151
Msa0586580 MtrunA17_Chr7g0271121 31.515 330 184 7 91 386 131 452 1.14e-39 151
Msa0586580 MtrunA17_Chr2g0300291 30.390 385 215 11 65 404 128 504 1.31e-39 151
Msa0586580 MtrunA17_Chr3g0098121 29.147 422 239 12 16 404 120 514 9.49e-39 149
Msa0586580 MtrunA17_Chr7g0263771 31.024 332 192 7 85 388 152 474 4.35e-38 146
Msa0586580 MtrunA17_Chr1g0179761 27.315 432 220 12 44 415 78 475 7.20e-38 144
Msa0586580 MtrunA17_Chr1g0200181 31.231 333 194 9 91 390 170 500 7.77e-38 145
Msa0586580 MtrunA17_Chr2g0293631 27.763 389 222 10 31 390 486 844 1.53e-36 143
Msa0586580 MtrunA17_Chr5g0442191 30.458 371 200 13 91 420 106 459 6.72e-36 139
Msa0586580 MtrunA17_Chr3g0095031 29.282 362 203 11 91 414 115 461 1.37e-35 138
Msa0586580 MtrunA17_Chr6g0449911 29.396 364 216 12 54 388 160 511 3.61e-35 138
Msa0586580 MtrunA17_Chr7g0270131 28.877 374 212 13 47 390 233 582 6.06e-35 137
Msa0586580 MtrunA17_Chr1g0157691 29.577 355 207 11 91 412 172 516 1.07e-34 136
Msa0586580 MtrunA17_Chr2g0277821 30.422 332 194 9 91 390 529 855 8.44e-34 134
Msa0586580 MtrunA17_Chr3g0114081 27.027 407 224 9 41 397 9 392 5.83e-33 131
Msa0586580 MtrunA17_Chr8g0347161 26.866 402 225 11 35 390 86 464 1.29e-32 130
Msa0586580 MtrunA17_Chr8g0347151 26.847 406 231 13 26 390 183 563 1.01e-31 128
Msa0586580 MtrunA17_Chr8g0347171 26.923 390 221 11 42 390 156 522 1.19e-31 127
Msa0586580 MtrunA17_Chr4g0040761 29.091 330 199 12 91 391 44 367 1.04e-30 125
Msa0586580 MtrunA17_Chr6g0461751 27.316 421 240 12 37 421 131 521 1.15e-30 124
Msa0586580 MtrunA17_Chr5g0409981 29.360 344 198 8 85 390 121 457 1.33e-29 120
Msa0586580 MtrunA17_Chr8g0386451 27.660 376 215 9 81 413 303 664 1.45e-29 122
Msa0586580 MtrunA17_Chr8g0342851 28.354 328 207 5 96 413 3 312 1.80e-29 117
Msa0586580 MtrunA17_Chr2g0307471 27.221 349 216 9 76 389 97 442 2.02e-29 120
Msa0586580 MtrunA17_Chr4g0062301 27.989 368 202 13 58 389 109 449 7.07e-29 119
Msa0586580 MtrunA17_Chr5g0443991 26.989 352 207 12 77 389 87 427 5.03e-28 117
Msa0586580 MtrunA17_Chr6g0475251 27.864 323 187 10 102 386 139 453 2.11e-26 112
Msa0586580 MtrunA17_Chr2g0309551 24.582 419 233 7 71 409 114 529 1.04e-25 109
Msa0586580 MtrunA17_Chr4g0025141 33.155 187 111 4 242 415 38 223 5.17e-24 100
Msa0586580 MtrunA17_Chr1g0169331 25.000 400 237 11 76 417 1 395 6.92e-24 102
Msa0586580 MtrunA17_Chr4g0034411 27.557 352 204 16 77 389 87 426 9.67e-24 104
Msa0586580 MtrunA17_Chr6g0466611 25.515 388 220 14 47 390 143 505 3.44e-23 102
Msa0586580 MtrunA17_Chr1g0204391 25.882 340 188 9 102 386 80 410 3.62e-23 102
Msa0586580 MtrunA17_Chr4g0058591 26.780 295 181 8 85 349 221 510 9.25e-22 97.8
Msa0586580 MtrunA17_Chr5g0429221 25.348 359 233 9 71 400 8 360 1.36e-21 96.3
Msa0586580 MtrunA17_Chr3g0137881 78.378 74 13 2 1 72 1 73 5.38e-21 87.0
Msa0586580 MtrunA17_Chr1g0149261 84.615 52 6 1 23 72 22 73 3.67e-20 84.7
Msa0586580 MtrunA17_Chr7g0236831 29.224 219 107 8 46 239 163 358 3.41e-16 81.3
Msa0586580 MtrunA17_Chr7g0236831 29.944 177 108 2 262 422 452 628 3.86e-16 80.9
Msa0586580 MtrunA17_Chr4g0039471 33.974 156 97 4 91 243 248 400 4.06e-16 80.1
Msa0586580 MtrunA17_Chr4g0025101 32.727 110 60 1 320 415 90 199 2.69e-15 74.7
Msa0586580 MtrunA17_Chr4g0025131 30.303 198 110 7 35 227 44 218 9.01e-15 74.7
Msa0586580 MtrunA17_Chr4g0029191 30.000 140 92 3 257 392 331 468 1.19e-14 76.3
Msa0586580 MtrunA17_Chr4g0029191 31.818 176 96 8 85 243 64 232 2.54e-11 65.9
Msa0586580 MtrunA17_Chr8g0349951 32.164 171 86 5 47 216 11 152 1.49e-14 71.2
Msa0586580 MtrunA17_Chr2g0301281 31.897 116 73 3 281 392 352 465 5.17e-14 74.3
Msa0586580 MtrunA17_Chr8g0354761 21.365 337 225 7 87 389 29 359 4.94e-12 67.4
Msa0586580 MtrunA17_Chr4g0004301 36.752 117 67 3 279 390 327 441 8.83e-12 67.0
Msa0586580 MtrunA17_Chr4g0062321 27.411 197 109 6 187 354 42 233 3.12e-11 63.5
Msa0586580 MtrunA17_Chr5g0434301 35.897 117 68 3 279 390 327 441 4.08e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586580 AT5G11170.1 81.982 444 37 3 1 421 1 424 0.0 698
Msa0586580 AT5G11200.1 81.982 444 37 3 1 421 1 424 0.0 698
Msa0586580 AT5G11170.2 86.510 341 24 1 103 421 1 341 0.0 603
Msa0586580 AT5G11200.2 54.694 490 146 11 1 421 1 483 6.67e-139 407
Msa0586580 AT5G11200.3 79.675 246 29 2 1 245 1 226 8.74e-125 370
Msa0586580 AT5G11200.3 92.896 183 13 0 239 421 283 465 1.77e-115 347
Msa0586580 AT3G61240.2 34.884 430 229 9 16 421 94 496 2.13e-72 236
Msa0586580 AT3G61240.1 34.884 430 229 9 16 421 94 496 2.13e-72 236
Msa0586580 AT2G45810.1 34.783 437 234 9 9 421 117 526 6.70e-72 236
Msa0586580 AT4G00660.1 35.402 435 230 9 11 421 96 503 2.06e-71 234
Msa0586580 AT4G00660.2 35.402 435 230 9 11 421 96 503 2.06e-71 234
Msa0586580 AT1G72730.1 35.052 388 204 8 52 416 48 410 6.85e-63 209
Msa0586580 AT3G13920.1 34.913 401 212 9 39 416 34 408 1.20e-61 206
Msa0586580 AT3G13920.3 34.913 401 212 9 39 416 24 398 1.28e-61 205
Msa0586580 AT1G54270.1 34.663 401 213 9 39 416 34 408 1.36e-59 200
Msa0586580 AT3G13920.4 36.056 355 199 7 85 416 54 403 1.57e-59 200
Msa0586580 AT3G19760.1 32.071 396 219 9 45 416 35 404 4.24e-59 199
Msa0586580 AT3G13920.5 35.467 375 194 8 39 390 38 387 3.23e-58 197
Msa0586580 AT3G13920.2 35.467 375 194 8 39 390 34 383 3.29e-58 197
Msa0586580 AT1G54270.2 35.775 355 200 7 85 416 54 403 1.48e-57 195
Msa0586580 AT1G51380.1 32.051 390 217 10 47 413 24 388 1.07e-54 187
Msa0586580 AT3G53110.1 31.190 420 224 13 44 422 90 485 8.03e-49 174
Msa0586580 AT1G55150.1 30.707 368 215 11 54 392 95 451 3.47e-43 159
Msa0586580 AT1G55150.2 30.707 368 215 11 54 392 120 476 5.96e-43 158
Msa0586580 AT1G16280.1 32.110 327 192 7 91 390 84 407 8.49e-43 157
Msa0586580 AT2G33730.1 30.332 422 218 9 52 428 320 710 1.25e-41 157
Msa0586580 AT4G16630.1 28.864 440 243 14 11 415 139 543 1.56e-41 157
Msa0586580 AT5G60990.1 28.676 408 218 11 47 414 11 385 4.64e-41 152
Msa0586580 AT5G63120.2 29.491 373 210 12 47 390 167 515 3.88e-40 152
Msa0586580 AT1G28180.1 33.333 324 185 8 95 390 3 323 1.80e-39 145
Msa0586580 AT5G26742.1 30.149 335 196 6 91 392 128 457 2.89e-39 150
Msa0586580 AT5G26742.2 30.149 335 196 6 91 392 128 457 2.91e-39 150
Msa0586580 AT3G58570.1 33.141 347 189 9 85 390 166 510 5.87e-39 149
Msa0586580 AT3G01540.4 28.341 434 242 15 25 416 126 532 6.85e-39 148
Msa0586580 AT3G01540.2 28.341 434 242 15 25 416 126 532 6.85e-39 148
Msa0586580 AT3G01540.3 28.341 434 242 15 25 416 126 532 6.85e-39 148
Msa0586580 AT3G01540.1 28.341 434 242 15 25 416 126 532 7.06e-39 148
Msa0586580 AT3G58510.1 31.148 366 208 11 91 416 177 538 1.36e-38 147
Msa0586580 AT3G58510.3 31.148 366 208 11 91 416 177 538 1.36e-38 147
Msa0586580 AT3G58510.2 31.148 366 208 11 91 416 177 538 1.36e-38 147
Msa0586580 AT5G26742.3 30.581 327 189 6 99 392 43 364 1.72e-38 147
Msa0586580 AT2G42520.2 30.563 373 215 9 85 416 179 548 1.19e-37 145
Msa0586580 AT2G42520.1 30.563 373 215 9 85 416 179 548 1.19e-37 145
Msa0586580 AT2G42520.3 30.563 373 215 9 85 416 179 548 1.19e-37 145
Msa0586580 AT4G33370.1 30.504 377 207 10 47 390 99 453 1.51e-37 144
Msa0586580 AT3G06480.1 28.608 388 220 9 31 390 426 784 3.54e-36 142
Msa0586580 AT5G14610.1 28.610 374 213 11 44 388 228 576 7.38e-36 140
Msa0586580 AT5G51280.1 31.343 335 191 10 91 390 172 502 7.93e-36 139
Msa0586580 AT1G20920.2 30.330 333 193 10 91 390 217 543 1.86e-35 140
Msa0586580 AT5G14610.2 29.111 371 209 11 47 388 163 508 3.60e-35 138
Msa0586580 AT1G20920.4 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT1G20920.6 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT1G20920.3 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT1G20920.7 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT1G20920.5 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT1G20920.1 30.120 332 195 10 91 390 555 881 4.01e-35 139
Msa0586580 AT5G14610.6 29.111 371 209 11 47 388 163 508 4.33e-35 138
Msa0586580 AT5G14610.5 29.111 371 209 11 47 388 171 516 4.49e-35 138
Msa0586580 AT5G14610.7 30.330 333 198 10 85 388 50 377 8.45e-35 135
Msa0586580 AT5G14610.3 30.330 333 198 10 85 388 50 377 8.45e-35 135
Msa0586580 AT2G47330.1 28.741 421 231 15 15 390 183 579 1.05e-34 137
Msa0586580 AT1G31970.1 30.725 345 193 7 85 390 134 471 1.34e-34 135
Msa0586580 AT1G71370.1 28.614 339 207 6 85 389 36 373 3.49e-34 134
Msa0586580 AT5G08610.1 27.146 431 243 9 23 413 360 759 5.63e-34 135
Msa0586580 AT5G63630.1 27.083 384 218 9 47 390 56 417 3.49e-33 131
Msa0586580 AT3G22330.1 27.901 362 206 11 91 413 130 475 8.64e-33 131
Msa0586580 AT3G22310.2 28.729 362 205 10 91 414 142 488 9.76e-33 130
Msa0586580 AT3G22310.1 28.729 362 205 10 91 414 142 488 1.07e-32 130
Msa0586580 AT5G63630.2 27.083 384 218 9 47 390 250 611 1.17e-32 131
Msa0586580 AT3G09720.2 28.148 405 244 11 54 427 133 521 2.14e-31 126
Msa0586580 AT3G09720.1 28.148 405 244 11 54 427 133 521 2.14e-31 126
Msa0586580 AT1G77030.1 26.882 372 219 12 47 390 30 376 7.95e-31 126
Msa0586580 AT5G08620.1 25.542 415 248 9 16 390 50 443 1.44e-30 124
Msa0586580 AT1G12770.2 25.722 381 204 6 85 387 130 509 2.50e-30 123
Msa0586580 AT1G12770.1 25.722 381 204 6 85 387 130 509 2.50e-30 123
Msa0586580 AT5G05450.1 26.608 342 207 6 91 389 42 382 2.88e-30 124
Msa0586580 AT3G18600.1 29.310 348 202 14 76 386 96 436 2.18e-29 120
Msa0586580 AT3G09620.2 31.935 310 189 8 91 390 423 720 4.13e-28 118
Msa0586580 AT3G02065.3 27.415 383 208 12 47 390 112 463 4.28e-28 116
Msa0586580 AT3G02065.2 27.415 383 208 12 47 390 112 463 4.28e-28 116
Msa0586580 AT3G09620.1 31.935 310 189 8 91 390 422 719 4.40e-28 118
Msa0586580 AT3G02065.1 28.869 336 189 11 94 390 2 326 6.66e-28 114
Msa0586580 AT5G62190.1 27.027 370 220 10 91 419 122 482 1.76e-27 115
Msa0586580 AT5G65900.1 27.811 338 199 12 85 386 174 502 4.73e-27 114
Msa0586580 AT1G63250.1 26.957 345 201 10 91 390 354 692 3.20e-25 109
Msa0586580 AT4G09730.1 28.319 339 194 12 96 390 143 476 1.90e-24 106
Msa0586580 AT5G63120.3 27.515 338 190 13 47 355 167 478 1.14e-23 103
Msa0586580 AT5G63120.4 27.515 338 190 13 47 355 167 478 1.14e-23 103
Msa0586580 AT5G63120.5 27.515 338 190 13 47 355 167 478 1.14e-23 103
Msa0586580 AT5G63120.1 27.410 332 188 12 47 349 167 474 1.48e-23 103
Msa0586580 AT5G54910.1 27.647 340 197 14 91 392 97 425 3.81e-23 102
Msa0586580 AT1G51380.2 29.520 271 144 9 47 294 24 270 4.68e-23 99.0
Msa0586580 AT2G07750.1 26.629 353 192 12 91 390 401 739 6.95e-23 102
Msa0586580 AT3G06480.2 26.404 356 205 9 31 358 426 752 1.48e-22 101
Msa0586580 AT5G19210.2 25.595 336 199 8 91 378 102 434 5.18e-22 98.6
Msa0586580 AT5G14610.4 26.891 357 205 12 34 361 158 487 8.23e-21 95.1
Msa0586580 AT1G51380.4 30.303 198 113 5 47 243 24 197 4.02e-18 85.1
Msa0586580 AT1G51380.3 30.303 198 113 5 47 243 24 197 5.54e-18 84.7
Msa0586580 AT4G34910.1 23.342 407 214 9 46 378 47 429 8.36e-18 86.3
Msa0586580 AT1G71280.2 28.322 286 172 9 85 351 37 308 1.30e-17 84.0
Msa0586580 AT1G71280.1 28.322 286 172 9 85 351 37 308 3.18e-17 84.0
Msa0586580 AT4G15850.1 38.793 116 68 1 279 391 329 444 2.39e-16 81.6
Msa0586580 AT3G16840.1 35.156 128 83 0 262 389 479 606 3.87e-16 81.6
Msa0586580 AT3G16840.1 29.204 226 113 7 45 246 190 392 3.37e-13 72.4
Msa0586580 AT3G16840.2 35.156 128 83 0 262 389 480 607 4.02e-16 81.3
Msa0586580 AT3G16840.2 29.204 226 113 7 45 246 191 393 3.34e-13 72.4
Msa0586580 AT2G40700.1 40.698 86 49 1 304 389 371 454 7.41e-15 77.4
Msa0586580 AT2G40700.1 31.875 160 100 4 85 237 51 208 5.72e-11 65.1
Msa0586580 AT5G19210.1 23.438 256 153 5 165 378 23 277 2.02e-11 65.5
Msa0586580 AT5G19210.3 23.438 256 153 5 165 378 23 277 2.02e-11 65.5

Find 121 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACCCTAGATCTGAATTT+TGG 0.086050 4_2:-7874649 None:intergenic
ATATTATCACTGCTTGTTTA+AGG 0.112845 4_2:+7881882 Msa0586580:three_prime_UTR
CGTGAAGAATTTGCGGCTTC+TGG 0.210712 4_2:-7874686 None:intergenic
CTACATTGTATTTGTCTATC+TGG 0.239942 4_2:-7881715 None:intergenic
AATTAACAGGGAAGAGAATA+TGG 0.250901 4_2:+7874792 Msa0586580:intron
CTCCGAGCCATTGTAGATTC+AGG 0.254688 4_2:+7876552 Msa0586580:CDS
GACTCTTCATGGTCTTGTTC+AGG 0.261990 4_2:+7879034 Msa0586580:CDS
CCATCAATTTGCATACATTC+TGG 0.285699 4_2:+7879285 Msa0586580:CDS
AATTTGCGGCTTCTGGTTCT+TGG 0.303416 4_2:-7874679 None:intergenic
GTCATTTGCCAAGCAAAATC+TGG 0.314855 4_2:+7877571 Msa0586580:CDS
CACAAGAGAACTAGCTTATC+AGG 0.318557 4_2:+7877681 Msa0586580:CDS
CCAACCCAAAATTCAGATCT+AGG 0.318747 4_2:+7874644 Msa0586580:five_prime_UTR
GTGAGAGATAAATAAGAAAA+TGG 0.325484 4_2:-7874597 None:intergenic
GTGGGTAGAGCTGGTAGATT+TGG 0.332706 4_2:+7880928 Msa0586580:CDS
CGAACAAAGTACTATACTTT+AGG 0.346342 4_2:-7881835 None:intergenic
AAGACCATGAAGAGTCAATT+TGG 0.351581 4_2:-7879027 None:intergenic
CTACGTTGGGATCCATAGTT+CGG 0.364465 4_2:+7876497 Msa0586580:CDS
CACATTGTTGTTGGAACACC+TGG 0.373009 4_2:+7877973 Msa0586580:CDS
CCAGAATGTATGCAAATTGA+TGG 0.376590 4_2:-7879285 None:intergenic
TGACTCTGAAGTTCTTAATC+AGG 0.377300 4_2:+7880990 Msa0586580:CDS
GTGGAGGTGTCAATTTGTTC+AGG 0.377618 4_2:-7881163 None:intergenic
CAGCAAATTGATCCTGTTCC+TGG 0.384946 4_2:+7877631 Msa0586580:CDS
GTCCATTCCTAAAATTGCTT+GGG 0.387301 4_2:-7877548 None:intergenic
CAAGGTCCTTATCTCTAGTC+AGG 0.399693 4_2:-7878008 None:intergenic
ACATCATCACTTGTTTATCA+TGG 0.400130 4_2:-7878229 None:intergenic
TAGGTTTGAGGTTGATATAA+AGG 0.405007 4_2:+7881135 Msa0586580:CDS
GAGGCCAAATTGACTCTTCA+TGG 0.406230 4_2:+7879023 Msa0586580:CDS
GTCACAAAACTTGATCAATT+AGG 0.410712 4_2:-7881482 None:intergenic
AGTCTCGAAATCCCGAACTA+TGG 0.410983 4_2:-7876509 None:intergenic
TGTTGTGCAGGGGCTACGTT+GGG 0.411662 4_2:+7876484 Msa0586580:intron
TACGTTGGGATCCATAGTTC+GGG 0.412375 4_2:+7876498 Msa0586580:CDS
TCCGAGCCATTGTAGATTCA+GGG 0.416662 4_2:+7876553 Msa0586580:CDS
AATTGATCCTGTTCCTGGTC+AGG 0.417735 4_2:+7877636 Msa0586580:CDS
AACTGTTAGGTGGGTAGAGC+TGG 0.421562 4_2:+7880919 Msa0586580:intron
TTGAAAACGTGAAGAATTTG+CGG 0.434302 4_2:-7874693 None:intergenic
CAGATAGACAAATACAATGT+AGG 0.437325 4_2:+7881716 Msa0586580:three_prime_UTR
CAAATGATCTGTTGCCGACT+GGG 0.439778 4_2:+7881523 Msa0586580:three_prime_UTR
TTCAGCTTACGATTCTTCTC+TGG 0.442230 4_2:-7879162 None:intergenic
ACAAATGATCTGTTGCCGAC+TGG 0.447494 4_2:+7881522 Msa0586580:three_prime_UTR
GGAGAAGCTCTGGTTTCAAC+AGG 0.450921 4_2:-7876533 None:intergenic
CGTCCATTCCTAAAATTGCT+TGG 0.451912 4_2:-7877549 None:intergenic
AGCAATTACCCTGTGAAGAT+AGG 0.456356 4_2:-7880770 None:intergenic
CATCATCACTTGTTTATCAT+GGG 0.463946 4_2:-7878228 None:intergenic
ATCATCTACATAAATTTCCA+TGG 0.469432 4_2:-7879000 None:intergenic
AGATAGGTATCAGCAGAATC+AGG 0.470818 4_2:-7880754 None:intergenic
TCAGGTGCAATCTAGGTTTG+AGG 0.476362 4_2:+7881123 Msa0586580:intron
GCTGCAACCTGACCAGGAAC+AGG 0.478885 4_2:-7877643 None:intergenic
TTGCGGCTTCTGGTTCTTGG+AGG 0.490228 4_2:-7874676 None:intergenic
TGCTGAACCTCTCAACTTCG+TGG 0.490700 4_2:-7877864 None:intergenic
TTTCAGATTGAAGCGATACA+AGG 0.493825 4_2:+7880633 Msa0586580:intron
GGCTCGAGTGCATATTCCAT+TGG 0.494009 4_2:+7881903 Msa0586580:three_prime_UTR
ACAATGGCTCGGAGAAGCTC+TGG 0.495080 4_2:-7876543 None:intergenic
CTGCTGATACCTATCTTCAC+AGG 0.495663 4_2:+7880761 Msa0586580:CDS
ACAAAGTACTATACTTTAGG+AGG 0.502365 4_2:-7881832 None:intergenic
GAGTGCCCACACATTGTTGT+TGG 0.508601 4_2:+7877964 Msa0586580:CDS
CTGGAATGTCACAAGAAGAA+AGG 0.515744 4_2:+7879304 Msa0586580:CDS
GATCTGTTGCCGACTGGGGA+TGG 0.516444 4_2:+7881528 Msa0586580:three_prime_UTR
TATAGTACTTTGTTCGTGAT+GGG 0.521979 4_2:+7881842 Msa0586580:three_prime_UTR
GTATAGTACTTTGTTCGTGA+TGG 0.524676 4_2:+7881841 Msa0586580:three_prime_UTR
CTATGGTGGTGTCAACATCA+AGG 0.524822 4_2:+7877918 Msa0586580:CDS
CAACCCAAAATTCAGATCTA+GGG 0.524915 4_2:+7874645 Msa0586580:five_prime_UTR
AGAAACCTTTCTAAAACCAA+TGG 0.526062 4_2:-7881919 None:intergenic
GCTGGTAGATTTGGCACCAA+GGG 0.527211 4_2:+7880937 Msa0586580:CDS
ACAAGTGCTGCAACCTGACC+AGG 0.529516 4_2:-7877649 None:intergenic
TTGTTGTGCAGGGGCTACGT+TGG 0.530806 4_2:+7876483 Msa0586580:intron
TAAATAAGAAAATGGAGCGT+GGG 0.537274 4_2:-7874589 None:intergenic
AGATAGACAAATACAATGTA+GGG 0.538975 4_2:+7881717 Msa0586580:three_prime_UTR
TTGCCAAGCAAAATCTGGGA+TGG 0.544090 4_2:+7877576 Msa0586580:CDS
CTGACTAGAGATAAGGACCT+TGG 0.544589 4_2:+7878009 Msa0586580:CDS
TAGTAAAACTTGCCTTCTGA+AGG 0.545476 4_2:-7876585 None:intergenic
GGGTTTGAGCATCCTTCAGA+AGG 0.549144 4_2:+7876573 Msa0586580:CDS
TGATGAGTGTGACAAGATGC+TGG 0.551103 4_2:+7878059 Msa0586580:CDS
TCATTTGCCAAGCAAAATCT+GGG 0.556430 4_2:+7877572 Msa0586580:CDS
AGCTGGTAGATTTGGCACCA+AGG 0.557173 4_2:+7880936 Msa0586580:CDS
CTCGTGGCAACCGATTTAGT+AGG 0.561671 4_2:+7880682 Msa0586580:CDS
GACAAGATGCTGGAATCACT+TGG 0.563752 4_2:+7878069 Msa0586580:CDS
CAGAATGTATGCAAATTGAT+GGG 0.563982 4_2:-7879284 None:intergenic
TCTTGCCCTGACTAGAGATA+AGG 0.564398 4_2:+7878002 Msa0586580:CDS
TGCCAAGCAAAATCTGGGAT+GGG 0.564980 4_2:+7877577 Msa0586580:CDS
TCCATTCCTAAAATTGCTTG+GGG 0.565327 4_2:-7877547 None:intergenic
ATTAACAGGGAAGAGAATAT+GGG 0.566898 4_2:+7874793 Msa0586580:intron
GGCAACCGATTTAGTAGGGA+GGG 0.566914 4_2:+7880687 Msa0586580:CDS
AAAAGTAATTGCAAGCCCCT+TGG 0.567368 4_2:-7880953 None:intergenic
ATAAATAAGAAAATGGAGCG+TGG 0.567522 4_2:-7874590 None:intergenic
CGATACAAGGGCTTCAAAGA+GGG 0.568834 4_2:+7880646 Msa0586580:CDS
TCGTGGCAACCGATTTAGTA+GGG 0.570668 4_2:+7880683 Msa0586580:CDS
ACCCTGAATCTACAATGGCT+CGG 0.572434 4_2:-7876554 None:intergenic
GGTGTTCCAACAACAATGTG+TGG 0.577454 4_2:-7877970 None:intergenic
CAACCGATTTAGTAGGGAGG+GGG 0.579596 4_2:+7880689 Msa0586580:CDS
TCATCTACATAAATTTCCAT+GGG 0.581419 4_2:-7878999 None:intergenic
GCAACCGATTTAGTAGGGAG+GGG 0.585593 4_2:+7880688 Msa0586580:CDS
AGATTTGCCACGAAGTTGAG+AGG 0.588345 4_2:+7877857 Msa0586580:intron
ATGCAGGAGCATACAAAACA+TGG 0.599811 4_2:-7881681 None:intergenic
GGAAATTTATGTAGATGATG+AGG 0.602038 4_2:+7879004 Msa0586580:CDS
AGAAGCAAAGAAAATTGTAG+TGG 0.603376 4_2:-7877500 None:intergenic
GCGATACAAGGGCTTCAAAG+AGG 0.604199 4_2:+7880645 Msa0586580:CDS
AAGGTCCTTATCTCTAGTCA+GGG 0.605894 4_2:-7878007 None:intergenic
CTCAAACCCTGAATCTACAA+TGG 0.606652 4_2:-7876559 None:intergenic
ACCTTGGTTTGAAGAATGTG+AGG 0.606908 4_2:+7878025 Msa0586580:CDS
GTCAGGGCAAGAATCCTCCC+AGG 0.611803 4_2:-7877991 None:intergenic
ATCATCACTTGTTTATCATG+GGG 0.613006 4_2:-7878227 None:intergenic
AACATTAACAACGTGAACAA+CGG 0.613413 4_2:-7881788 None:intergenic
GATACAAGGGCTTCAAAGAG+GGG 0.617527 4_2:+7880647 Msa0586580:CDS
GTGTTCCAACAACAATGTGT+GGG 0.623994 4_2:-7877969 None:intergenic
GCCTCACATTCTTCAAACCA+AGG 0.633068 4_2:-7878026 None:intergenic
TTCAGATTGAAGCGATACAA+GGG 0.636996 4_2:+7880634 Msa0586580:intron
AAGTATCTTACTGTATGTGG+AGG 0.637443 4_2:-7881179 None:intergenic
CAAAGTACTATACTTTAGGA+GGG 0.640396 4_2:-7881831 None:intergenic
GATAAGCTAGTTCTCTTGTG+TGG 0.648872 4_2:-7877678 None:intergenic
AGACAAATACAATGTAGGGT+CGG 0.653247 4_2:+7881721 Msa0586580:three_prime_UTR
CTGGTAGATTTGGCACCAAG+GGG 0.659086 4_2:+7880938 Msa0586580:CDS
TGCTGATACCTATCTTCACA+GGG 0.659100 4_2:+7880762 Msa0586580:CDS
AAATGATCTGTTGCCGACTG+GGG 0.667196 4_2:+7881524 Msa0586580:three_prime_UTR
CAGATCATATATACTTACTG+AGG 0.671770 4_2:+7877471 Msa0586580:intron
ACATTGTTGTTGGAACACCT+GGG 0.674278 4_2:+7877974 Msa0586580:CDS
GGGGAAGCAGAGAATTCTCG+TGG 0.676806 4_2:+7880666 Msa0586580:CDS
ACAACAAATCCATCCCCAGT+CGG 0.685926 4_2:-7881537 None:intergenic
GAAAGATACTGAAGTTTACG+AGG 0.689385 4_2:+7874822 Msa0586580:CDS
CCATTCCTAAAATTGCTTGG+GGG 0.689622 4_2:-7877546 None:intergenic
TGGCAACCGATTTAGTAGGG+AGG 0.690164 4_2:+7880686 Msa0586580:CDS
TTGTTGTTGGAACACCTGGG+AGG 0.722510 4_2:+7877977 Msa0586580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCATTTAATTTTGTAT+GGG + chr4_2:7878439-7878458 Msa0586580:intron 10.0%
!!! TAAATAATATCATGTTATTT+TGG + chr4_2:7878758-7878777 Msa0586580:intron 10.0%
!!! AAACTAATAGATTTTTTTTT+AGG + chr4_2:7880502-7880521 Msa0586580:intron 10.0%
!!! TAAAAAAACTAACTTTTTGA+CGG - chr4_2:7874914-7874933 None:intergenic 15.0%
!! ACACATTTCATTAATAAATA+TGG + chr4_2:7875635-7875654 Msa0586580:intron 15.0%
!! TAATAAATATGGTTTAAGTA+AGG + chr4_2:7875646-7875665 Msa0586580:intron 15.0%
!!! TTTTTTTCTTTCAATTAATC+AGG + chr4_2:7877377-7877396 Msa0586580:intron 15.0%
!! ACAAAATTAAATGAATATGA+GGG - chr4_2:7878437-7878456 None:intergenic 15.0%
!! TACAAAATTAAATGAATATG+AGG - chr4_2:7878438-7878457 None:intergenic 15.0%
!!! CATATTCATTTAATTTTGTA+TGG + chr4_2:7878438-7878457 Msa0586580:intron 15.0%
!! GCAAAAAAAAAAATCATATT+TGG - chr4_2:7878532-7878551 None:intergenic 15.0%
!! AAATGCATTTAAACAAAATA+TGG - chr4_2:7878670-7878689 None:intergenic 15.0%
!! TACAAATTAATACAGAAAAA+AGG - chr4_2:7878740-7878759 None:intergenic 15.0%
!!! AAATAAAAACTCAGTTATTT+TGG - chr4_2:7878928-7878947 None:intergenic 15.0%
!! TGCTAAAAATATAGTAATAT+AGG - chr4_2:7879496-7879515 None:intergenic 15.0%
!!! TATTACTATATTTTTAGCAT+TGG + chr4_2:7879497-7879516 Msa0586580:intron 15.0%
!!! ATTGTTGACTTTAATTTTTA+TGG + chr4_2:7879744-7879763 Msa0586580:intron 15.0%
!!! TCTAAAATCATATTTATCAA+TGG - chr4_2:7880284-7880303 None:intergenic 15.0%
!! ATTCTCTTCTATTAATTTAA+GGG + chr4_2:7880476-7880495 Msa0586580:intron 15.0%
!!! TTTTTTTAGGTGAAAAATTA+AGG + chr4_2:7880515-7880534 Msa0586580:intron 15.0%
!!! TTTTTTAGGTGAAAAATTAA+GGG + chr4_2:7880516-7880535 Msa0586580:intron 15.0%
!!! TCTAGTTTAAATATAGTTTT+TGG + chr4_2:7880815-7880834 Msa0586580:intron 15.0%
!!! TACTTTTTCTTAATAGTTTA+TGG + chr4_2:7881197-7881216 Msa0586580:intron 15.0%
!! TTTAAACTGTAATGAAAAAT+AGG + chr4_2:7881610-7881629 Msa0586580:three_prime_UTR 15.0%
!! TTAAACTGTAATGAAAAATA+GGG + chr4_2:7881611-7881630 Msa0586580:three_prime_UTR 15.0%
!!! TTTTATTCTTCTTCTTTTTG+TGG + chr4_2:7874929-7874948 Msa0586580:intron 20.0%
!! ATAAATAGAGAAATATCCAA+TGG + chr4_2:7875177-7875196 Msa0586580:intron 20.0%
!! TATTATTATCATACTTCCAT+TGG - chr4_2:7875196-7875215 None:intergenic 20.0%
!! ATTCAATTTGTGTAATTGAA+TGG + chr4_2:7875332-7875351 Msa0586580:intron 20.0%
!! TTCAATTTGTGTAATTGAAT+GGG + chr4_2:7875333-7875352 Msa0586580:intron 20.0%
!! ATTTGTAGTAATTAGTATAC+TGG + chr4_2:7875586-7875605 Msa0586580:intron 20.0%
!!! AAAACCTAATATTACTTTTG+AGG - chr4_2:7876005-7876024 None:intergenic 20.0%
!!! TAATATTAGGTTTTCATTTG+AGG + chr4_2:7876011-7876030 Msa0586580:intron 20.0%
!! AGTAAATCAAATTCTTGATA+TGG - chr4_2:7876204-7876223 None:intergenic 20.0%
!!! TATCAAGAATTTGATTTACT+TGG + chr4_2:7876204-7876223 Msa0586580:intron 20.0%
!!! AGTCATTTTAGCATTAATTA+TGG + chr4_2:7876246-7876265 Msa0586580:intron 20.0%
!!! TTTTAGCATTAATTATGGTT+AGG + chr4_2:7876251-7876270 Msa0586580:intron 20.0%
!! TTTAGCATTAATTATGGTTA+GGG + chr4_2:7876252-7876271 Msa0586580:intron 20.0%
!! AAATCAATCTAACAATATAG+TGG - chr4_2:7876383-7876402 None:intergenic 20.0%
!! AGTGTAAAATATATTGAGAA+CGG - chr4_2:7876772-7876791 None:intergenic 20.0%
!! TATGAATACATCACAAAAAT+TGG + chr4_2:7877418-7877437 Msa0586580:intron 20.0%
!! TACATCAAGAAAATTAAATG+AGG - chr4_2:7878386-7878405 None:intergenic 20.0%
!! CAAAATTAAATGAATATGAG+GGG - chr4_2:7878436-7878455 None:intergenic 20.0%
!!! TATTTTGAGAGCATTTAATA+AGG + chr4_2:7878471-7878490 Msa0586580:intron 20.0%
!!! ATTTGGTAGTCTAAAATATA+AGG - chr4_2:7878515-7878534 None:intergenic 20.0%
!!! TTTGTTTAAATGCATTTTGT+TGG + chr4_2:7878673-7878692 Msa0586580:intron 20.0%
!! TTTGCAAATTAATACAAAGA+AGG - chr4_2:7878892-7878911 None:intergenic 20.0%
!! GAAAGATATCAACAATAATA+GGG - chr4_2:7879084-7879103 None:intergenic 20.0%
!! AGAAAGATATCAACAATAAT+AGG - chr4_2:7879085-7879104 None:intergenic 20.0%
!!! TTTTGACAAAAATAACAACT+TGG - chr4_2:7879215-7879234 None:intergenic 20.0%
!! GATTCTCTTCTATTAATTTA+AGG + chr4_2:7880475-7880494 Msa0586580:intron 20.0%
!! ATAAGCATATAAAGATAGAA+GGG - chr4_2:7880890-7880909 None:intergenic 20.0%
!! TGAAAATAAAGTTTAGCTAT+TGG - chr4_2:7881106-7881125 None:intergenic 20.0%
!!! AATAGCTAAACTTTATTTTC+AGG + chr4_2:7881105-7881124 Msa0586580:intron 20.0%
! GTGAGAGATAAATAAGAAAA+TGG - chr4_2:7874600-7874619 None:intergenic 25.0%
! AATCGAATTGATTAGGATTA+GGG - chr4_2:7874731-7874750 None:intergenic 25.0%
! AAATCGAATTGATTAGGATT+AGG - chr4_2:7874732-7874751 None:intergenic 25.0%
! TAGTGAAAATCGAATTGATT+AGG - chr4_2:7874738-7874757 None:intergenic 25.0%
! AAACTTTGAATGTTAGTTGT+CGG + chr4_2:7875442-7875461 Msa0586580:intron 25.0%
!!! TTTTTTAACTGTTGCAGATT+TGG + chr4_2:7875520-7875539 Msa0586580:intron 25.0%
!!! TTTTTAACTGTTGCAGATTT+GGG + chr4_2:7875521-7875540 Msa0586580:intron 25.0%
! AGATATAACTAAATCACCAA+AGG - chr4_2:7875548-7875567 None:intergenic 25.0%
!!! AGTAATTAGTATACTGGTTT+TGG + chr4_2:7875592-7875611 Msa0586580:intron 25.0%
! TTATGAAAAGAGTGAAATTG+TGG + chr4_2:7875727-7875746 Msa0586580:intron 25.0%
! AATGCTATGATGCTTAAAAT+TGG - chr4_2:7876079-7876098 None:intergenic 25.0%
! GAAAACAAAGATCAACAAAT+AGG - chr4_2:7876150-7876169 None:intergenic 25.0%
!! ATGAGAGTACATATAAACAT+GGG - chr4_2:7876706-7876725 None:intergenic 25.0%
! ATGAGAATTTATAAGATGAG+AGG - chr4_2:7876986-7877005 None:intergenic 25.0%
!!! AATTTTTCAGTGATTTCTCA+AGG + chr4_2:7877095-7877114 Msa0586580:intron 25.0%
! AATACATCACAAAAATTGGT+TGG + chr4_2:7877422-7877441 Msa0586580:intron 25.0%
! TGGTAAACCTTTACATTAAA+AGG + chr4_2:7877442-7877461 Msa0586580:intron 25.0%
!! AAAACAGCAACTTTTATATC+TGG - chr4_2:7877898-7877917 None:intergenic 25.0%
!!! ATAAAAGTTGCTGTTTTCTA+TGG + chr4_2:7877901-7877920 Msa0586580:CDS 25.0%
!! AGTATTTATGTGGTAGTTTT+TGG + chr4_2:7878571-7878590 Msa0586580:intron 25.0%
! ATTCAAAACACATCACAAAT+AGG - chr4_2:7878710-7878729 None:intergenic 25.0%
! TCATCTACATAAATTTCCAT+GGG - chr4_2:7879002-7879021 None:intergenic 25.0%
! ATCATCTACATAAATTTCCA+TGG - chr4_2:7879003-7879022 None:intergenic 25.0%
!! ATTTAATGTAGTGCTGAAAA+AGG - chr4_2:7879134-7879153 None:intergenic 25.0%
!!! TTTTGAAATTAATGCCACAT+GGG + chr4_2:7879340-7879359 Msa0586580:intron 25.0%
! TATTATGCAAGATTATCTCT+TGG + chr4_2:7879563-7879582 Msa0586580:intron 25.0%
! ATTATGCAAGATTATCTCTT+GGG + chr4_2:7879564-7879583 Msa0586580:intron 25.0%
! CAATCTCTTACTTAATACTA+TGG - chr4_2:7879614-7879633 None:intergenic 25.0%
!!! AGAGATTGCGTTTTTTATAT+TGG + chr4_2:7879626-7879645 Msa0586580:intron 25.0%
!! TTGTAGGATTGATAGTAAAA+TGG + chr4_2:7879693-7879712 Msa0586580:intron 25.0%
! AGTTTCAAGATCTTGTAAAT+TGG + chr4_2:7879973-7879992 Msa0586580:intron 25.0%
! GTTTCAAGATCTTGTAAATT+GGG + chr4_2:7879974-7879993 Msa0586580:intron 25.0%
!! TGGATCCAACAATTTTATAA+TGG + chr4_2:7880077-7880096 Msa0586580:intron 25.0%
!! GGATCCAACAATTTTATAAT+GGG + chr4_2:7880078-7880097 Msa0586580:intron 25.0%
!! GATCCAACAATTTTATAATG+GGG + chr4_2:7880079-7880098 Msa0586580:intron 25.0%
! AATCATATTTATCAATGGCA+GGG - chr4_2:7880279-7880298 None:intergenic 25.0%
! AAATCATATTTATCAATGGC+AGG - chr4_2:7880280-7880299 None:intergenic 25.0%
! CCTATAATCATAGTTATCAA+CGG - chr4_2:7880370-7880389 None:intergenic 25.0%
! GATAAGCATATAAAGATAGA+AGG - chr4_2:7880891-7880910 None:intergenic 25.0%
!!! TTGGTTAATAAAAGCATCAA+TGG - chr4_2:7881087-7881106 None:intergenic 25.0%
!!! AAAAAGTATCTTACTGTATG+TGG - chr4_2:7881185-7881204 None:intergenic 25.0%
! TGCACAAAGTTTATTAGAAT+TGG + chr4_2:7881239-7881258 Msa0586580:intron 25.0%
!!! GCTTTATAAAGGTTTTATCT+TGG + chr4_2:7881423-7881442 Msa0586580:intron 25.0%
! TTGTCTATCTGGATAAAAAA+CGG - chr4_2:7881707-7881726 None:intergenic 25.0%
! AGATAGACAAATACAATGTA+GGG + chr4_2:7881717-7881736 Msa0586580:three_prime_UTR 25.0%
! ATATTATCACTGCTTGTTTA+AGG + chr4_2:7881882-7881901 Msa0586580:three_prime_UTR 25.0%
!!! ATATTCCATTGGTTTTAGAA+AGG + chr4_2:7881914-7881933 Msa0586580:three_prime_UTR 25.0%
ATAAATAAGAAAATGGAGCG+TGG - chr4_2:7874593-7874612 None:intergenic 30.0%
! AAACCCTAGATCTGAATTTT+GGG - chr4_2:7874651-7874670 None:intergenic 30.0%
! AAAACCCTAGATCTGAATTT+TGG - chr4_2:7874652-7874671 None:intergenic 30.0%
TTGAAAACGTGAAGAATTTG+CGG - chr4_2:7874696-7874715 None:intergenic 30.0%
! CAAATTCTTCACGTTTTCAA+AGG + chr4_2:7874696-7874715 Msa0586580:five_prime_UTR 30.0%
ATTGATTAGGATTAGGGTTA+GGG - chr4_2:7874725-7874744 None:intergenic 30.0%
AATTGATTAGGATTAGGGTT+AGG - chr4_2:7874726-7874745 None:intergenic 30.0%
ATTCTCTTCCCTGTTAATTA+GGG - chr4_2:7874791-7874810 None:intergenic 30.0%
TATTCTCTTCCCTGTTAATT+AGG - chr4_2:7874792-7874811 None:intergenic 30.0%
AATTAACAGGGAAGAGAATA+TGG + chr4_2:7874792-7874811 Msa0586580:intron 30.0%
ATTAACAGGGAAGAGAATAT+GGG + chr4_2:7874793-7874812 Msa0586580:intron 30.0%
TTGTGTAATTGAATGGGATA+AGG + chr4_2:7875339-7875358 Msa0586580:intron 30.0%
TACGTCAGACTTTAGTAAAT+TGG + chr4_2:7875411-7875430 Msa0586580:intron 30.0%
AACTTTGAATGTTAGTTGTC+GGG + chr4_2:7875443-7875462 Msa0586580:intron 30.0%
GTTGTATAGTTTGGTATACT+GGG - chr4_2:7875860-7875879 None:intergenic 30.0%
TGTTGTATAGTTTGGTATAC+TGG - chr4_2:7875861-7875880 None:intergenic 30.0%
! ATGTTAGTAATAGTGGGATA+AGG - chr4_2:7875890-7875909 None:intergenic 30.0%
TTATCCCACTATTACTAACA+TGG + chr4_2:7875889-7875908 Msa0586580:intron 30.0%
ACATCCATGTTAGTAATAGT+GGG - chr4_2:7875896-7875915 None:intergenic 30.0%
TGCACCTCAAAAGTAATATT+AGG + chr4_2:7875998-7876017 Msa0586580:intron 30.0%
TTAAGCATCATAGCATTAAC+TGG + chr4_2:7876082-7876101 Msa0586580:intron 30.0%
TCAAATTCTTGATATGGACT+AGG - chr4_2:7876198-7876217 None:intergenic 30.0%
ATGCTAAAATGACTATAGAC+CGG - chr4_2:7876240-7876259 None:intergenic 30.0%
!! CTAACAATATAGTGGATAGT+TGG - chr4_2:7876375-7876394 None:intergenic 30.0%
ACAAAAGAAAATACAGAGTG+AGG - chr4_2:7876467-7876486 None:intergenic 30.0%
!! TGTATTTTCTTTTGTTGTGC+AGG + chr4_2:7876472-7876491 Msa0586580:intron 30.0%
!! GTATTTTCTTTTGTTGTGCA+GGG + chr4_2:7876473-7876492 Msa0586580:intron 30.0%
!! TATTTTCTTTTGTTGTGCAG+GGG + chr4_2:7876474-7876493 Msa0586580:intron 30.0%
GACTATACTGAATCATGTAA+TGG - chr4_2:7876618-7876637 None:intergenic 30.0%
! TCTACAGACTTCTTATGTTT+TGG + chr4_2:7876646-7876665 Msa0586580:intron 30.0%
! CTACAGACTTCTTATGTTTT+GGG + chr4_2:7876647-7876666 Msa0586580:intron 30.0%
! CATGAGAGTACATATAAACA+TGG - chr4_2:7876707-7876726 None:intergenic 30.0%
!! TTAATAGACTTGGTGTTATG+TGG - chr4_2:7876894-7876913 None:intergenic 30.0%
AAGTCTATTAACTCTACCAA+GGG + chr4_2:7876903-7876922 Msa0586580:intron 30.0%
ATCACTGAAAAATTTATCCG+AGG - chr4_2:7877089-7877108 None:intergenic 30.0%
CAAAATATGTGTTTGGTCAT+AGG - chr4_2:7877238-7877257 None:intergenic 30.0%
CAAGCAACAAAATATGTGTT+TGG - chr4_2:7877245-7877264 None:intergenic 30.0%
ACCTTTACATTAAAAGGATC+TGG + chr4_2:7877448-7877467 Msa0586580:intron 30.0%
CAGATCATATATACTTACTG+AGG + chr4_2:7877471-7877490 Msa0586580:intron 30.0%
AGAAGCAAAGAAAATTGTAG+TGG - chr4_2:7877503-7877522 None:intergenic 30.0%
! TGATAGTGTATTGGAAACAA+AGG - chr4_2:7877788-7877807 None:intergenic 30.0%
! ATACGTTTGTGATAGTGTAT+TGG - chr4_2:7877797-7877816 None:intergenic 30.0%
ATCATCACTTGTTTATCATG+GGG - chr4_2:7878230-7878249 None:intergenic 30.0%
CATCATCACTTGTTTATCAT+GGG - chr4_2:7878231-7878250 None:intergenic 30.0%
ACATCATCACTTGTTTATCA+TGG - chr4_2:7878232-7878251 None:intergenic 30.0%
TCCTTATAATTGAGACAGTT+GGG - chr4_2:7878324-7878343 None:intergenic 30.0%
TTCCTTATAATTGAGACAGT+TGG - chr4_2:7878325-7878344 None:intergenic 30.0%
! ATGAATATGAGGGGTAATTT+TGG - chr4_2:7878427-7878446 None:intergenic 30.0%
! TTAATAAGGCGAAGTTGATT+AGG + chr4_2:7878485-7878504 Msa0586580:intron 30.0%
TAATGTGATGCGAAAATAAC+AGG - chr4_2:7878644-7878663 None:intergenic 30.0%
CTGATGACATTCAACAAAAA+TGG - chr4_2:7878797-7878816 None:intergenic 30.0%
! CATTTTTGTTGAATGTCATC+AGG + chr4_2:7878795-7878814 Msa0586580:intron 30.0%
!!! TGCATTTTGTTGATTTTGTG+TGG + chr4_2:7878835-7878854 Msa0586580:intron 30.0%
GGAAATTTATGTAGATGATG+AGG + chr4_2:7879004-7879023 Msa0586580:CDS 30.0%
CAGAATGTATGCAAATTGAT+GGG - chr4_2:7879287-7879306 None:intergenic 30.0%
!!! CTTTTGAAATTAATGCCACA+TGG + chr4_2:7879339-7879358 Msa0586580:intron 30.0%
CAGCATATAAAACATATACC+CGG - chr4_2:7879440-7879459 None:intergenic 30.0%
! TGCACGAATAGTCAATATTT+TGG - chr4_2:7879540-7879559 None:intergenic 30.0%
AAATCCTACAAAAAGGGATT+AGG - chr4_2:7879674-7879693 None:intergenic 30.0%
CCTACAAAATCCTACAAAAA+GGG - chr4_2:7879680-7879699 None:intergenic 30.0%
TCCTACAAAATCCTACAAAA+AGG - chr4_2:7879681-7879700 None:intergenic 30.0%
TAATTTACAGGAAAGGGATT+GGG - chr4_2:7879785-7879804 None:intergenic 30.0%
TTAATTTACAGGAAAGGGAT+TGG - chr4_2:7879786-7879805 None:intergenic 30.0%
TTACAAGATCTTGAAACTTC+TGG - chr4_2:7879971-7879990 None:intergenic 30.0%
TAGGCATAGTTATCAATTGT+GGG + chr4_2:7880039-7880058 Msa0586580:intron 30.0%
TCACCCCATTATAAAATTGT+TGG - chr4_2:7880085-7880104 None:intergenic 30.0%
TCAGTCTTAATAAACCAAGA+TGG + chr4_2:7880137-7880156 Msa0586580:intron 30.0%
ATTCATTGAGAAAAGTTACC+AGG + chr4_2:7880331-7880350 Msa0586580:intron 30.0%
!! CCGTTGATAACTATGATTAT+AGG + chr4_2:7880367-7880386 Msa0586580:intron 30.0%
!!! ATAGTTTTTGGCTTGTAGTA+TGG + chr4_2:7880827-7880846 Msa0586580:intron 30.0%
! AGTTCTTAATCAGGTTAGTT+AGG + chr4_2:7880999-7881018 Msa0586580:intron 30.0%
! TCTCTCATTTTCATTGAAAC+TGG + chr4_2:7881039-7881058 Msa0586580:intron 30.0%
! TCATTTTCATTGAAACTGGA+GGG + chr4_2:7881043-7881062 Msa0586580:intron 30.0%
!!! TTTATTTTCAGGTGCAATCT+AGG + chr4_2:7881116-7881135 Msa0586580:intron 30.0%
!! TAGGTTTGAGGTTGATATAA+AGG + chr4_2:7881135-7881154 Msa0586580:CDS 30.0%
ACAAGTGTGATGCTTTATAA+AGG + chr4_2:7881412-7881431 Msa0586580:intron 30.0%
GTCACAAAACTTGATCAATT+AGG - chr4_2:7881485-7881504 None:intergenic 30.0%
!! TCAAGTTTTGTGACATGATT+TGG + chr4_2:7881491-7881510 Msa0586580:exon 30.0%
TGAAAAATAGGGAATTCGAA+TGG + chr4_2:7881622-7881641 Msa0586580:three_prime_UTR 30.0%
CTACATTGTATTTGTCTATC+TGG - chr4_2:7881718-7881737 None:intergenic 30.0%
CAGATAGACAAATACAATGT+AGG + chr4_2:7881716-7881735 Msa0586580:three_prime_UTR 30.0%
AACATTAACAACGTGAACAA+CGG - chr4_2:7881791-7881810 None:intergenic 30.0%
! CAAAGTACTATACTTTAGGA+GGG - chr4_2:7881834-7881853 None:intergenic 30.0%
! ACAAAGTACTATACTTTAGG+AGG - chr4_2:7881835-7881854 None:intergenic 30.0%
! CGAACAAAGTACTATACTTT+AGG - chr4_2:7881838-7881857 None:intergenic 30.0%
TATAGTACTTTGTTCGTGAT+GGG + chr4_2:7881842-7881861 Msa0586580:three_prime_UTR 30.0%
!! AGAAACCTTTCTAAAACCAA+TGG - chr4_2:7881922-7881941 None:intergenic 30.0%
!!! TGAATTTTGGGTTGGGTTTT+AGG - chr4_2:7874639-7874658 None:intergenic 35.0%
!!! CTAGATCTGAATTTTGGGTT+GGG - chr4_2:7874646-7874665 None:intergenic 35.0%
CAACCCAAAATTCAGATCTA+GGG + chr4_2:7874645-7874664 Msa0586580:five_prime_UTR 35.0%
AGCTGAAAACCCTAATTAAC+AGG + chr4_2:7874779-7874798 Msa0586580:intron 35.0%
GCTGAAAACCCTAATTAACA+GGG + chr4_2:7874780-7874799 Msa0586580:intron 35.0%
GAAAGATACTGAAGTTTACG+AGG + chr4_2:7874822-7874841 Msa0586580:CDS 35.0%
!!! TTTTTGACGGATTCAGTAGT+GGG - chr4_2:7874901-7874920 None:intergenic 35.0%
TAAAGTTTCGTGCTTGAAAG+TGG + chr4_2:7875046-7875065 Msa0586580:intron 35.0%
TTGATGCAATCGATGTTAAC+TGG + chr4_2:7875227-7875246 Msa0586580:intron 35.0%
TATAGTTTGGTATACTGGGA+AGG - chr4_2:7875856-7875875 None:intergenic 35.0%
GACATCCATGTTAGTAATAG+TGG - chr4_2:7875897-7875916 None:intergenic 35.0%
TACTAACATGGATGTCTGAA+TGG + chr4_2:7875901-7875920 Msa0586580:intron 35.0%
TCGCGTAAATAAACAGCTAA+AGG - chr4_2:7875949-7875968 None:intergenic 35.0%
!!! TTACTTTTGAGGTGCAAATC+AGG - chr4_2:7875994-7876013 None:intergenic 35.0%
!! TTCTTGATATGGACTAGGAA+AGG - chr4_2:7876193-7876212 None:intergenic 35.0%
TGCTAAAATGACTATAGACC+GGG - chr4_2:7876239-7876258 None:intergenic 35.0%
AGGAAGAGAAACTCAAAAAG+TGG - chr4_2:7876447-7876466 None:intergenic 35.0%
TAGTAAAACTTGCCTTCTGA+AGG - chr4_2:7876588-7876607 None:intergenic 35.0%
AGTAGACGACATCAATACAA+TGG - chr4_2:7876741-7876760 None:intergenic 35.0%
CTTGGTAGAGTTAATAGACT+TGG - chr4_2:7876904-7876923 None:intergenic 35.0%
CAAGTCTATTAACTCTACCA+AGG + chr4_2:7876902-7876921 Msa0586580:intron 35.0%
! GTACTCTAGAAGACAGAATA+GGG - chr4_2:7877030-7877049 None:intergenic 35.0%
!! CTAGAGTACCTTTTGATAAC+AGG + chr4_2:7877041-7877060 Msa0586580:intron 35.0%
AGACAATGCCTGTTATCAAA+AGG - chr4_2:7877052-7877071 None:intergenic 35.0%
TCTCTAATAGTCAAGTTCCT+CGG + chr4_2:7877069-7877088 Msa0586580:intron 35.0%
! GCTGTCTCTTTTGCTTATTT+GGG + chr4_2:7877117-7877136 Msa0586580:intron 35.0%
! CTGTCTCTTTTGCTTATTTG+GGG + chr4_2:7877118-7877137 Msa0586580:intron 35.0%
! TGTCTCTTTTGCTTATTTGG+GGG + chr4_2:7877119-7877138 Msa0586580:intron 35.0%
! TTGTTGCTTGTTAATCTCCT+TGG + chr4_2:7877255-7877274 Msa0586580:intron 35.0%
ACAAAGATAGATGAGAACCA+AGG - chr4_2:7877275-7877294 None:intergenic 35.0%
! GCCAGATCCTTTTAATGTAA+AGG - chr4_2:7877452-7877471 None:intergenic 35.0%
TCCATTCCTAAAATTGCTTG+GGG - chr4_2:7877550-7877569 None:intergenic 35.0%
GTCCATTCCTAAAATTGCTT+GGG - chr4_2:7877551-7877570 None:intergenic 35.0%
TCATTTGCCAAGCAAAATCT+GGG + chr4_2:7877572-7877591 Msa0586580:CDS 35.0%
!!! AAAGTTGCTGTTTTCTATGG+TGG + chr4_2:7877904-7877923 Msa0586580:CDS 35.0%
! ATCTTTTCTCATGTCTGCAA+AGG - chr4_2:7878183-7878202 None:intergenic 35.0%
TGAATTTCTTGCAAACAGGT+CGG - chr4_2:7878280-7878299 None:intergenic 35.0%
TGCATGAATTTCTTGCAAAC+AGG - chr4_2:7878284-7878303 None:intergenic 35.0%
TCCCAACTGTCTCAATTATA+AGG + chr4_2:7878320-7878339 Msa0586580:intron 35.0%
AGACCAGAGTAGTATTTATG+TGG + chr4_2:7878561-7878580 Msa0586580:intron 35.0%
CTACCACATAAATACTACTC+TGG - chr4_2:7878567-7878586 None:intergenic 35.0%
!!! TGCATTTTGTTGGTTTTGTG+CGG + chr4_2:7878683-7878702 Msa0586580:intron 35.0%
AAGACCATGAAGAGTCAATT+TGG - chr4_2:7879030-7879049 None:intergenic 35.0%
CCAGAATGTATGCAAATTGA+TGG - chr4_2:7879288-7879307 None:intergenic 35.0%
CCATCAATTTGCATACATTC+TGG + chr4_2:7879285-7879304 Msa0586580:CDS 35.0%
!!! CGTTCTAAGATGTTTTGTTC+CGG + chr4_2:7879418-7879437 Msa0586580:intron 35.0%
!!! GTTCTAAGATGTTTTGTTCC+GGG + chr4_2:7879419-7879438 Msa0586580:intron 35.0%
! CGGGTATATGTTTTATATGC+TGG + chr4_2:7879438-7879457 Msa0586580:intron 35.0%
TATGCTGGATGTCTGTTAAA+TGG + chr4_2:7879453-7879472 Msa0586580:intron 35.0%
ATGCTGGATGTCTGTTAAAT+GGG + chr4_2:7879454-7879473 Msa0586580:intron 35.0%
! TTGTCCTAATCCCTTTTTGT+AGG + chr4_2:7879667-7879686 Msa0586580:intron 35.0%
! CCCTTTTTGTAGGATTTTGT+AGG + chr4_2:7879677-7879696 Msa0586580:intron 35.0%
GGTGGTTAATTTACAGGAAA+GGG - chr4_2:7879791-7879810 None:intergenic 35.0%
! CATGATCTTGTGCTTTAAGT+AGG + chr4_2:7879839-7879858 Msa0586580:intron 35.0%
GACAAATTGCTGATGAGATT+AGG - chr4_2:7879870-7879889 None:intergenic 35.0%
ATACCTAAACATATCCAGTC+CGG - chr4_2:7879922-7879941 None:intergenic 35.0%
! AGATCTTGAAACTTCTGGAA+GGG - chr4_2:7879966-7879985 None:intergenic 35.0%
AAGATCTTGAAACTTCTGGA+AGG - chr4_2:7879967-7879986 None:intergenic 35.0%
AAACAACACACTCTTCAAAC+AGG - chr4_2:7880018-7880037 None:intergenic 35.0%
!! TTGAAGAGTGTGTTGTTTCT+AGG + chr4_2:7880020-7880039 Msa0586580:intron 35.0%
CTAGGCATAGTTATCAATTG+TGG + chr4_2:7880038-7880057 Msa0586580:intron 35.0%
! TAGTTATCAATTGTGGGTTG+TGG + chr4_2:7880045-7880064 Msa0586580:intron 35.0%
TGGCTGGTAACTATTCTAAA+TGG - chr4_2:7880250-7880269 None:intergenic 35.0%
AATCATAGTTATCAACGGCA+GGG - chr4_2:7880365-7880384 None:intergenic 35.0%
TAATCATAGTTATCAACGGC+AGG - chr4_2:7880366-7880385 None:intergenic 35.0%
TACTGAACTTTATTCGTACG+AGG - chr4_2:7880560-7880579 None:intergenic 35.0%
TTTCAGATTGAAGCGATACA+AGG + chr4_2:7880633-7880652 Msa0586580:intron 35.0%
TTCAGATTGAAGCGATACAA+GGG + chr4_2:7880634-7880653 Msa0586580:intron 35.0%
TATAAAGATAGAAGGGACAG+AGG - chr4_2:7880883-7880902 None:intergenic 35.0%
TTATCGACATCTGAACTGTT+AGG + chr4_2:7880906-7880925 Msa0586580:intron 35.0%
!! ATTACTTTTGTGTCTTCTGC+TGG + chr4_2:7880967-7880986 Msa0586580:CDS 35.0%
!! TGACTCTGAAGTTCTTAATC+AGG + chr4_2:7880990-7881009 Msa0586580:CDS 35.0%
! CTCATTTTCATTGAAACTGG+AGG + chr4_2:7881042-7881061 Msa0586580:intron 35.0%
! CATTTTCATTGAAACTGGAG+GGG + chr4_2:7881044-7881063 Msa0586580:intron 35.0%
! AAAGCATCAATGGCCAAAAA+GGG - chr4_2:7881077-7881096 None:intergenic 35.0%
!! AAAAGCATCAATGGCCAAAA+AGG - chr4_2:7881078-7881097 None:intergenic 35.0%
AAGTATCTTACTGTATGTGG+AGG - chr4_2:7881182-7881201 None:intergenic 35.0%
AGACAAATACAATGTAGGGT+CGG + chr4_2:7881721-7881740 Msa0586580:three_prime_UTR 35.0%
GTATAGTACTTTGTTCGTGA+TGG + chr4_2:7881841-7881860 Msa0586580:three_prime_UTR 35.0%
!! CCTAGATCTGAATTTTGGGT+TGG - chr4_2:7874647-7874666 None:intergenic 40.0%
CCAACCCAAAATTCAGATCT+AGG + chr4_2:7874644-7874663 Msa0586580:five_prime_UTR 40.0%
!!! CTTTTTGACGGATTCAGTAG+TGG - chr4_2:7874902-7874921 None:intergenic 40.0%
! ATGTTAACTGGTTCCGTCTA+AGG + chr4_2:7875239-7875258 Msa0586580:intron 40.0%
! TGTTAACTGGTTCCGTCTAA+GGG + chr4_2:7875240-7875259 Msa0586580:intron 40.0%
AACATCTACTCTCCCTTAGA+CGG - chr4_2:7875255-7875274 None:intergenic 40.0%
! AGAGTAGATGTTGATTGACC+TGG + chr4_2:7875263-7875282 Msa0586580:intron 40.0%
! GATGTTGATTGACCTGGATT+TGG + chr4_2:7875269-7875288 Msa0586580:intron 40.0%
!!! TTTTTGAGTGCACCAAATCC+AGG - chr4_2:7875284-7875303 None:intergenic 40.0%
AATGGGATAAGGCTTGATTG+TGG + chr4_2:7875350-7875369 Msa0586580:intron 40.0%
TCGAGTCATTGGATAAAGAC+CGG + chr4_2:7875382-7875401 Msa0586580:intron 40.0%
AAAGTCTGACGTAAGTTGTC+CGG - chr4_2:7875404-7875423 None:intergenic 40.0%
GTTGTCGGGTCTTTATCTAT+TGG + chr4_2:7875457-7875476 Msa0586580:intron 40.0%
TATCTATTGGCCGCTATTTG+CGG + chr4_2:7875470-7875489 Msa0586580:intron 40.0%
! AGGCACAGTGTGATAATGAA+TGG + chr4_2:7875666-7875685 Msa0586580:intron 40.0%
AGAGTGAAATTGTGGTAGAG+TGG + chr4_2:7875735-7875754 Msa0586580:intron 40.0%
ACCTTATGTAGTACAGCCAA+AGG - chr4_2:7875761-7875780 None:intergenic 40.0%
ACTACATAAGGTCGCTCTTA+TGG + chr4_2:7875769-7875788 Msa0586580:intron 40.0%
CTTATGGACACAGACAATCA+TGG + chr4_2:7875785-7875804 Msa0586580:intron 40.0%
TAGCCAGTGTGAGATTGTAA+TGG - chr4_2:7875811-7875830 None:intergenic 40.0%
! GGCTTGGTTGTTGTATAGTT+TGG - chr4_2:7875869-7875888 None:intergenic 40.0%
! AGTAATAGTGGGATAAGGCT+TGG - chr4_2:7875885-7875904 None:intergenic 40.0%
AAAATTGGAGAGCAGTGAGA+CGG - chr4_2:7876064-7876083 None:intergenic 40.0%
! TTTACTTGGTCTTTGTTCCC+CGG + chr4_2:7876218-7876237 Msa0586580:intron 40.0%
GCTAAAATGACTATAGACCG+GGG - chr4_2:7876238-7876257 None:intergenic 40.0%
CTCAAACCCTGAATCTACAA+TGG - chr4_2:7876562-7876581 None:intergenic 40.0%
ATGGGCATGCTAGAAAGAAA+AGG - chr4_2:7876688-7876707 None:intergenic 40.0%
AGAACAACTGACACATGAAC+AGG + chr4_2:7876857-7876876 Msa0586580:intron 40.0%
GTAAGAGTTAAGAAAGCCCT+TGG - chr4_2:7876922-7876941 None:intergenic 40.0%
! GGTACTCTAGAAGACAGAAT+AGG - chr4_2:7877031-7877050 None:intergenic 40.0%
! GGCTGTCTCTTTTGCTTATT+TGG + chr4_2:7877116-7877135 Msa0586580:intron 40.0%
! GTCTCTTTTGCTTATTTGGG+GGG + chr4_2:7877120-7877139 Msa0586580:intron 40.0%
CCATTCCTAAAATTGCTTGG+GGG - chr4_2:7877549-7877568 None:intergenic 40.0%
CGTCCATTCCTAAAATTGCT+TGG - chr4_2:7877552-7877571 None:intergenic 40.0%
GTCATTTGCCAAGCAAAATC+TGG + chr4_2:7877571-7877590 Msa0586580:CDS 40.0%
! GATAAGCTAGTTCTCTTGTG+TGG - chr4_2:7877681-7877700 None:intergenic 40.0%
! CACAAGAGAACTAGCTTATC+AGG + chr4_2:7877681-7877700 Msa0586580:CDS 40.0%
GTGTTCCAACAACAATGTGT+GGG - chr4_2:7877972-7877991 None:intergenic 40.0%
! ACATTGTTGTTGGAACACCT+GGG + chr4_2:7877974-7877993 Msa0586580:CDS 40.0%
AAGGTCCTTATCTCTAGTCA+GGG - chr4_2:7878010-7878029 None:intergenic 40.0%
! ACCTTGGTTTGAAGAATGTG+AGG + chr4_2:7878025-7878044 Msa0586580:CDS 40.0%
AACACGCAATTAAGGAGACA+AGG - chr4_2:7878108-7878127 None:intergenic 40.0%
CTCGACAAAACACGCAATTA+AGG - chr4_2:7878116-7878135 None:intergenic 40.0%
TCATGTCTGCAAAGGTCAAA+TGG - chr4_2:7878175-7878194 None:intergenic 40.0%
CAAAACAGCTCTTGCATCTA+CGG - chr4_2:7878598-7878617 None:intergenic 40.0%
GATGCGAAAATAACAGGAGT+TGG - chr4_2:7878638-7878657 None:intergenic 40.0%
CTACATAAATTTCCATGGGC+TGG - chr4_2:7878998-7879017 None:intergenic 40.0%
TTCAGCTTACGATTCTTCTC+TGG - chr4_2:7879165-7879184 None:intergenic 40.0%
CTGGAATGTCACAAGAAGAA+AGG + chr4_2:7879304-7879323 Msa0586580:CDS 40.0%
AGTACATAAGACTACCCATG+TGG - chr4_2:7879357-7879376 None:intergenic 40.0%
GATGTCTGTTAAATGGGACA+TGG + chr4_2:7879460-7879479 Msa0586580:intron 40.0%
TCTGTTAAATGGGACATGGT+TGG + chr4_2:7879464-7879483 Msa0586580:intron 40.0%
!! TATTGGTGTCATGCACATCA+CGG + chr4_2:7879643-7879662 Msa0586580:intron 40.0%
GGACTTATGTCTGTCTGATT+AGG + chr4_2:7879714-7879733 Msa0586580:intron 40.0%
GGGTGGTTAATTTACAGGAA+AGG - chr4_2:7879792-7879811 None:intergenic 40.0%
! ATCTTGTGCTTTAAGTAGGC+TGG + chr4_2:7879843-7879862 Msa0586580:intron 40.0%
CACACTCTTCAAACAGGAAA+TGG - chr4_2:7880012-7880031 None:intergenic 40.0%
TGAGCCAGTTATCAGACATA+TGG + chr4_2:7880165-7880184 Msa0586580:intron 40.0%
! TTGCTTGTCAGATCTGAAGT+GGG - chr4_2:7880202-7880221 None:intergenic 40.0%
TTTGCTTGTCAGATCTGAAG+TGG - chr4_2:7880203-7880222 None:intergenic 40.0%
ATTTATCAATGGCAGGGTAG+TGG - chr4_2:7880273-7880292 None:intergenic 40.0%
ATCATAGTTATCAACGGCAG+GGG - chr4_2:7880364-7880383 None:intergenic 40.0%
AGATAGGTATCAGCAGAATC+AGG - chr4_2:7880757-7880776 None:intergenic 40.0%
TGCTGATACCTATCTTCACA+GGG + chr4_2:7880762-7880781 Msa0586580:CDS 40.0%
AGCAATTACCCTGTGAAGAT+AGG - chr4_2:7880773-7880792 None:intergenic 40.0%
AAAAGTAATTGCAAGCCCCT+TGG - chr4_2:7880956-7880975 None:intergenic 40.0%
! ATGCAGGAGCATACAAAACA+TGG - chr4_2:7881684-7881703 None:intergenic 40.0%
TCTGGATAAAAAACGGATGC+AGG - chr4_2:7881700-7881719 None:intergenic 40.0%
!! AATTTGCGGCTTCTGGTTCT+TGG - chr4_2:7874682-7874701 None:intergenic 45.0%
GGTTGTTGTCTTCGAGTCAT+TGG + chr4_2:7875371-7875390 Msa0586580:intron 45.0%
TGTTGCAGATTTGGGTCCTT+TGG + chr4_2:7875529-7875548 Msa0586580:intron 45.0%
AATTGTGGTAGAGTGGCCTT+TGG + chr4_2:7875742-7875761 Msa0586580:intron 45.0%
GCCTTTGGCTGTACTACATA+AGG + chr4_2:7875757-7875776 Msa0586580:intron 45.0%
TGGCCATTACAATCTCACAC+TGG + chr4_2:7875805-7875824 Msa0586580:intron 45.0%
TTTGGTATACTGGGAAGGTG+GGG - chr4_2:7875851-7875870 None:intergenic 45.0%
GTTTGGTATACTGGGAAGGT+GGG - chr4_2:7875852-7875871 None:intergenic 45.0%
AGTTTGGTATACTGGGAAGG+TGG - chr4_2:7875853-7875872 None:intergenic 45.0%
TGTCTGAATGGCTTGAAAGC+AGG + chr4_2:7875913-7875932 Msa0586580:intron 45.0%
AATGGCTTGAAAGCAGGAAG+TGG + chr4_2:7875919-7875938 Msa0586580:intron 45.0%
AGGTTGAGCTTTCTGTGAGT+GGG - chr4_2:7876130-7876149 None:intergenic 45.0%
! TAGGTTGAGCTTTCTGTGAG+TGG - chr4_2:7876131-7876150 None:intergenic 45.0%
CTACGTTGGGATCCATAGTT+CGG + chr4_2:7876497-7876516 Msa0586580:CDS 45.0%
TACGTTGGGATCCATAGTTC+GGG + chr4_2:7876498-7876517 Msa0586580:CDS 45.0%
AGTCTCGAAATCCCGAACTA+TGG - chr4_2:7876512-7876531 None:intergenic 45.0%
TCCGAGCCATTGTAGATTCA+GGG + chr4_2:7876553-7876572 Msa0586580:CDS 45.0%
ACCCTGAATCTACAATGGCT+CGG - chr4_2:7876557-7876576 None:intergenic 45.0%
! TCTTTTGCTTATTTGGGGGG+TGG + chr4_2:7877123-7877142 Msa0586580:intron 45.0%
! TGCATCCCCCAAGCAATTTT+AGG + chr4_2:7877541-7877560 Msa0586580:CDS 45.0%
!! CCCCCAAGCAATTTTAGGAA+TGG + chr4_2:7877546-7877565 Msa0586580:CDS 45.0%
TTGCCAAGCAAAATCTGGGA+TGG + chr4_2:7877576-7877595 Msa0586580:CDS 45.0%
! TGCCAAGCAAAATCTGGGAT+GGG + chr4_2:7877577-7877596 Msa0586580:CDS 45.0%
! TTCCCATCCCAGATTTTGCT+TGG - chr4_2:7877582-7877601 None:intergenic 45.0%
CAGCAAATTGATCCTGTTCC+TGG + chr4_2:7877631-7877650 Msa0586580:CDS 45.0%
AATTGATCCTGTTCCTGGTC+AGG + chr4_2:7877636-7877655 Msa0586580:CDS 45.0%
TCTCAACTTCGTGGCAAATC+TGG - chr4_2:7877858-7877877 None:intergenic 45.0%
AGATTTGCCACGAAGTTGAG+AGG + chr4_2:7877857-7877876 Msa0586580:intron 45.0%
! CTATGGTGGTGTCAACATCA+AGG + chr4_2:7877918-7877937 Msa0586580:CDS 45.0%
GGTGTTCCAACAACAATGTG+TGG - chr4_2:7877973-7877992 None:intergenic 45.0%
! CACATTGTTGTTGGAACACC+TGG + chr4_2:7877973-7877992 Msa0586580:CDS 45.0%
TCTTGCCCTGACTAGAGATA+AGG + chr4_2:7878002-7878021 Msa0586580:CDS 45.0%
CAAGGTCCTTATCTCTAGTC+AGG - chr4_2:7878011-7878030 None:intergenic 45.0%
CTGACTAGAGATAAGGACCT+TGG + chr4_2:7878009-7878028 Msa0586580:CDS 45.0%
GCCTCACATTCTTCAAACCA+AGG - chr4_2:7878029-7878048 None:intergenic 45.0%
TGATGAGTGTGACAAGATGC+TGG + chr4_2:7878059-7878078 Msa0586580:CDS 45.0%
GACAAGATGCTGGAATCACT+TGG + chr4_2:7878069-7878088 Msa0586580:CDS 45.0%
ACGCAATTAAGGAGACAAGG+AGG - chr4_2:7878105-7878124 None:intergenic 45.0%
! GTTTTCAGCTACACTCAGCA+AGG + chr4_2:7878250-7878269 Msa0586580:intron 45.0%
CAGGAGTTGGAACAATAAGC+AGG - chr4_2:7878625-7878644 None:intergenic 45.0%
! AATCTTTTTCCTCCAGCCCA+TGG + chr4_2:7878983-7879002 Msa0586580:intron 45.0%
!! CATAAATTTCCATGGGCTGG+AGG - chr4_2:7878995-7879014 None:intergenic 45.0%
! GAGGCCAAATTGACTCTTCA+TGG + chr4_2:7879023-7879042 Msa0586580:CDS 45.0%
!! GACTCTTCATGGTCTTGTTC+AGG + chr4_2:7879034-7879053 Msa0586580:CDS 45.0%
! TCTTGTTCAGGTGCGTTTTG+TGG + chr4_2:7879046-7879065 Msa0586580:intron 45.0%
! CTTGTTCAGGTGCGTTTTGT+GGG + chr4_2:7879047-7879066 Msa0586580:intron 45.0%
CAGGAGGGTGGTTAATTTAC+AGG - chr4_2:7879797-7879816 None:intergenic 45.0%
CTATGCAAACATGCACAGGA+GGG - chr4_2:7879812-7879831 None:intergenic 45.0%
ACTATGCAAACATGCACAGG+AGG - chr4_2:7879813-7879832 None:intergenic 45.0%
TCCTGTGCATGTTTGCATAG+TGG + chr4_2:7879812-7879831 Msa0586580:intron 45.0%
! GCAAGTCTGTTGACTACTTC+CGG + chr4_2:7879900-7879919 Msa0586580:intron 45.0%
! CTTCCGGACTGGATATGTTT+AGG + chr4_2:7879916-7879935 Msa0586580:intron 45.0%
CAGGCCATATGTCTGATAAC+TGG - chr4_2:7880172-7880191 None:intergenic 45.0%
! TGCTTGTCAGATCTGAAGTG+GGG - chr4_2:7880201-7880220 None:intergenic 45.0%
TGGAGTCTAACTAGTTGCTC+TGG - chr4_2:7880230-7880249 None:intergenic 45.0%
CTGAAACAGACATGTCGTCA+TGG - chr4_2:7880619-7880638 None:intergenic 45.0%
CGATACAAGGGCTTCAAAGA+GGG + chr4_2:7880646-7880665 Msa0586580:CDS 45.0%
GATACAAGGGCTTCAAAGAG+GGG + chr4_2:7880647-7880666 Msa0586580:CDS 45.0%
! TCGTGGCAACCGATTTAGTA+GGG + chr4_2:7880683-7880702 Msa0586580:CDS 45.0%
AATCCCCCTCCCTACTAAAT+CGG - chr4_2:7880695-7880714 None:intergenic 45.0%
CTGCTGATACCTATCTTCAC+AGG + chr4_2:7880761-7880780 Msa0586580:CDS 45.0%
! GACAGAGGTCTTTTACAAGG+AGG - chr4_2:7880868-7880887 None:intergenic 45.0%
! AGGGACAGAGGTCTTTTACA+AGG - chr4_2:7880871-7880890 None:intergenic 45.0%
TCGACATCTGAACTGTTAGG+TGG + chr4_2:7880909-7880928 Msa0586580:intron 45.0%
CGACATCTGAACTGTTAGGT+GGG + chr4_2:7880910-7880929 Msa0586580:intron 45.0%
CATTGAAACTGGAGGGGAAT+AGG + chr4_2:7881050-7881069 Msa0586580:intron 45.0%
TCAGGTGCAATCTAGGTTTG+AGG + chr4_2:7881123-7881142 Msa0586580:intron 45.0%
!! GTGGAGGTGTCAATTTGTTC+AGG - chr4_2:7881166-7881185 None:intergenic 45.0%
ACAAATGATCTGTTGCCGAC+TGG + chr4_2:7881522-7881541 Msa0586580:three_prime_UTR 45.0%
! CAAATGATCTGTTGCCGACT+GGG + chr4_2:7881523-7881542 Msa0586580:three_prime_UTR 45.0%
! AAATGATCTGTTGCCGACTG+GGG + chr4_2:7881524-7881543 Msa0586580:three_prime_UTR 45.0%
ACAACAAATCCATCCCCAGT+CGG - chr4_2:7881540-7881559 None:intergenic 45.0%
! TCGAATGGCTCCTGAGTTTT+TGG + chr4_2:7881637-7881656 Msa0586580:three_prime_UTR 45.0%
! CGAATGGCTCCTGAGTTTTT+GGG + chr4_2:7881638-7881657 Msa0586580:three_prime_UTR 45.0%
CAGTCTTCTCCCAAAAACTC+AGG - chr4_2:7881650-7881669 None:intergenic 45.0%
CGTGAAGAATTTGCGGCTTC+TGG - chr4_2:7874689-7874708 None:intergenic 50.0%
TCACTGCAGTCCGCAAATAG+CGG - chr4_2:7875483-7875502 None:intergenic 50.0%
AGACACACACACACACTCAC+AGG - chr4_2:7876293-7876312 None:intergenic 50.0%
! GGAGAAGCTCTGGTTTCAAC+AGG - chr4_2:7876536-7876555 None:intergenic 50.0%
CTCCGAGCCATTGTAGATTC+AGG + chr4_2:7876552-7876571 Msa0586580:CDS 50.0%
GGGTTTGAGCATCCTTCAGA+AGG + chr4_2:7876573-7876592 Msa0586580:CDS 50.0%
TGCTGAACCTCTCAACTTCG+TGG - chr4_2:7877867-7877886 None:intergenic 50.0%
GAGTGCCCACACATTGTTGT+TGG + chr4_2:7877964-7877983 Msa0586580:CDS 50.0%
! TTGTTGTTGGAACACCTGGG+AGG + chr4_2:7877977-7877996 Msa0586580:CDS 50.0%
GCCACTATGCAAACATGCAC+AGG - chr4_2:7879816-7879835 None:intergenic 50.0%
! TCTGTTGACTACTTCCGGAC+TGG + chr4_2:7879905-7879924 Msa0586580:intron 50.0%
! ACTGGCTCAACTAGCCATCT+TGG - chr4_2:7880154-7880173 None:intergenic 50.0%
! TATCAATGGCAGGGTAGTGG+TGG - chr4_2:7880270-7880289 None:intergenic 50.0%
GCGATACAAGGGCTTCAAAG+AGG + chr4_2:7880645-7880664 Msa0586580:CDS 50.0%
! CTCGTGGCAACCGATTTAGT+AGG + chr4_2:7880682-7880701 Msa0586580:CDS 50.0%
! TGGCAACCGATTTAGTAGGG+AGG + chr4_2:7880686-7880705 Msa0586580:CDS 50.0%
! GGCAACCGATTTAGTAGGGA+GGG + chr4_2:7880687-7880706 Msa0586580:CDS 50.0%
! GCAACCGATTTAGTAGGGAG+GGG + chr4_2:7880688-7880707 Msa0586580:CDS 50.0%
! CAACCGATTTAGTAGGGAGG+GGG + chr4_2:7880689-7880708 Msa0586580:CDS 50.0%
AACTGTTAGGTGGGTAGAGC+TGG + chr4_2:7880919-7880938 Msa0586580:intron 50.0%
GTGGGTAGAGCTGGTAGATT+TGG + chr4_2:7880928-7880947 Msa0586580:CDS 50.0%
AGCTGGTAGATTTGGCACCA+AGG + chr4_2:7880936-7880955 Msa0586580:CDS 50.0%
GCTGGTAGATTTGGCACCAA+GGG + chr4_2:7880937-7880956 Msa0586580:CDS 50.0%
CTGGTAGATTTGGCACCAAG+GGG + chr4_2:7880938-7880957 Msa0586580:CDS 50.0%
! GAGGGGAATAGGACCCTTTT+TGG + chr4_2:7881061-7881080 Msa0586580:intron 50.0%
GGCTCGAGTGCATATTCCAT+TGG + chr4_2:7881903-7881922 Msa0586580:three_prime_UTR 50.0%
!! TTGCGGCTTCTGGTTCTTGG+AGG - chr4_2:7874679-7874698 None:intergenic 55.0%
TTGTTGTGCAGGGGCTACGT+TGG + chr4_2:7876483-7876502 Msa0586580:intron 55.0%
TGTTGTGCAGGGGCTACGTT+GGG + chr4_2:7876484-7876503 Msa0586580:intron 55.0%
! ACAATGGCTCGGAGAAGCTC+TGG - chr4_2:7876546-7876565 None:intergenic 55.0%
! ACAAGTGCTGCAACCTGACC+AGG - chr4_2:7877652-7877671 None:intergenic 55.0%
TGCAAACATGCACAGGAGGG+TGG - chr4_2:7879809-7879828 None:intergenic 55.0%
! GTGGGTTGTGGCACAGTAAC+TGG + chr4_2:7880057-7880076 Msa0586580:intron 55.0%
! ATCTGAAGTGGGGCTTGGAC+AGG - chr4_2:7880191-7880210 None:intergenic 55.0%
! GTCAGATCTGAAGTGGGGCT+TGG - chr4_2:7880196-7880215 None:intergenic 55.0%
AGTTATCAACGGCAGGGGAG+TGG - chr4_2:7880359-7880378 None:intergenic 55.0%
GGGGAAGCAGAGAATTCTCG+TGG + chr4_2:7880666-7880685 Msa0586580:CDS 55.0%
GTATACTGGGAAGGTGGGGC+AGG - chr4_2:7875847-7875866 None:intergenic 60.0%
GCTGCAACCTGACCAGGAAC+AGG - chr4_2:7877646-7877665 None:intergenic 60.0%
GTCAGGGCAAGAATCCTCCC+AGG - chr4_2:7877994-7878013 None:intergenic 60.0%
! AATGGCAGGGTAGTGGTGGC+TGG - chr4_2:7880266-7880285 None:intergenic 60.0%
! GATCTGTTGCCGACTGGGGA+TGG + chr4_2:7881528-7881547 Msa0586580:three_prime_UTR 60.0%
AACGGCAGGGGAGTGGTGCC+TGG - chr4_2:7880352-7880371 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7874590 7881986 7874590 ID=Msa0586580;Name=Msa0586580
chr4_2 mRNA 7874590 7881986 7874590 ID=Msa0586580-mRNA-1;Parent=Msa0586580;Name=Msa0586580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=138|0.66|0.69|0.92|0.66|0.61|13|483|440
chr4_2 exon 7874590 7874717 7874590 ID=Msa0586580-mRNA-1:exon:2078;Parent=Msa0586580-mRNA-1
chr4_2 exon 7874801 7874920 7874801 ID=Msa0586580-mRNA-1:exon:2079;Parent=Msa0586580-mRNA-1
chr4_2 exon 7876494 7876598 7876494 ID=Msa0586580-mRNA-1:exon:2080;Parent=Msa0586580-mRNA-1
chr4_2 exon 7877474 7877702 7877474 ID=Msa0586580-mRNA-1:exon:2081;Parent=Msa0586580-mRNA-1
chr4_2 exon 7877859 7878090 7877859 ID=Msa0586580-mRNA-1:exon:2082;Parent=Msa0586580-mRNA-1
chr4_2 exon 7878189 7878241 7878189 ID=Msa0586580-mRNA-1:exon:2083;Parent=Msa0586580-mRNA-1
chr4_2 exon 7878999 7879055 7878999 ID=Msa0586580-mRNA-1:exon:2084;Parent=Msa0586580-mRNA-1
chr4_2 exon 7879141 7879325 7879141 ID=Msa0586580-mRNA-1:exon:2085;Parent=Msa0586580-mRNA-1
chr4_2 exon 7880639 7880783 7880639 ID=Msa0586580-mRNA-1:exon:2086;Parent=Msa0586580-mRNA-1
chr4_2 exon 7880928 7881011 7880928 ID=Msa0586580-mRNA-1:exon:2087;Parent=Msa0586580-mRNA-1
chr4_2 exon 7881127 7881190 7881127 ID=Msa0586580-mRNA-1:exon:2088;Parent=Msa0586580-mRNA-1
chr4_2 exon 7881355 7881389 7881355 ID=Msa0586580-mRNA-1:exon:2089;Parent=Msa0586580-mRNA-1
chr4_2 exon 7881480 7881986 7881480 ID=Msa0586580-mRNA-1:exon:2090;Parent=Msa0586580-mRNA-1
chr4_2 five_prime_UTR 7874590 7874717 7874590 ID=Msa0586580-mRNA-1:five_prime_utr;Parent=Msa0586580-mRNA-1
chr4_2 five_prime_UTR 7874801 7874810 7874801 ID=Msa0586580-mRNA-1:five_prime_utr;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7874811 7874920 7874811 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7876494 7876598 7876494 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7877474 7877702 7877474 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7877859 7878090 7877859 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7878189 7878241 7878189 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7878999 7879055 7878999 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7879141 7879325 7879141 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7880639 7880783 7880639 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7880928 7881011 7880928 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7881127 7881190 7881127 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7881355 7881389 7881355 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 CDS 7881480 7881503 7881480 ID=Msa0586580-mRNA-1:cds;Parent=Msa0586580-mRNA-1
chr4_2 three_prime_UTR 7881504 7881986 7881504 ID=Msa0586580-mRNA-1:three_prime_utr;Parent=Msa0586580-mRNA-1
Gene Sequence

>Msa0586580

ATGGGTGAATTGAAAGATACTGAAGTTTACGAGGAAGAGCTTATCGATTACGAAGAAGAAGATGAAAAAGCTCTTGATTCTACTAAACCCACTACTGAATCCGTCAAAAAGGGCTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTCCGAGCCATTGTAGATTCAGGGTTTGAGCATCCTTCAGAAGGCAAATCATATATACTTACTGAGGATTCGTCCACTACAATTTTCTTTGCTTCTTCATTAGTGCAACACGAATGCATCCCCCAAGCAATTTTAGGAATGGACGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTGCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGCCACGAAGTTGAGAGGTTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAATGAGTGCCCACACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGAGAAAAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAACCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAATTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAATAAGTTGCTTGTTGAGTGTAACTTCCCATCAATTTGCATACATTCTGGAATGTCACAAGAAGAAAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAGAGAATTCTCGTGGCAACCGATTTAGTAGGGAGGGGGATTGATATAGAGCGTGTCAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACCTATCTTCACAGGGTGGGTAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCTGGTGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACAAATACTTGAACATACATGAAATTGAAGCAGAAAATTGCCTAATTGATCAAGTTTTGTGA
Protein sequence

>Msa0586580

MGELKDTEVYEEELIDYEEEDEKALDSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKSYILTEDSSTTIFFASSLVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYKYLNIHEIEAENCLIDQVL*