AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0665100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665100 MtrunA17_Chr4g0003441 90.265 452 2 2 7 436 57 488 0.0 789
Msa0665100 MtrunA17_Chr1g0149251 86.919 344 23 1 115 436 1 344 0.0 613
Msa0665100 MtrunA17_Chr3g0137901 90.556 180 17 0 257 436 1 180 7.17e-118 341
Msa0665100 MtrunA17_Chr3g0137891 92.308 143 11 0 115 257 1 143 5.29e-94 283
Msa0665100 MtrunA17_Chr7g0247191 34.211 456 242 10 9 433 93 521 1.91e-69 229
Msa0665100 MtrunA17_Chr7g0247181 33.991 456 243 10 9 433 83 511 4.58e-69 228
Msa0665100 MtrunA17_Chr7g0247221 33.696 460 239 11 9 433 86 514 5.81e-68 224
Msa0665100 MtrunA17_Chr2g0299681 35.567 388 202 8 64 428 47 409 7.96e-63 208
Msa0665100 MtrunA17_Chr2g0329931 35.677 384 199 8 68 428 51 409 3.45e-61 204
Msa0665100 MtrunA17_Chr4g0070981 33.890 419 228 9 33 428 17 409 9.11e-61 203
Msa0665100 MtrunA17_Chr8g0342861 34.794 388 205 8 64 428 47 409 5.79e-60 201
Msa0665100 MtrunA17_Chr2g0297261 32.274 409 223 12 43 428 25 402 1.76e-57 194
Msa0665100 MtrunA17_Chr7g0236841 30.905 398 212 10 59 426 11 375 1.37e-46 166
Msa0665100 MtrunA17_Chr2g0330401 31.522 368 212 11 66 404 91 447 9.49e-46 165
Msa0665100 MtrunA17_Chr6g0483491 30.402 398 214 10 59 426 11 375 1.44e-45 163
Msa0665100 MtrunA17_Chr4g0076491 32.292 384 193 6 64 402 293 654 1.56e-45 167
Msa0665100 MtrunA17_Chr3g0107851 29.894 378 206 9 59 400 118 472 1.60e-45 166
Msa0665100 MtrunA17_Chr4g0063551 33.333 351 188 8 97 403 159 507 1.19e-43 162
Msa0665100 MtrunA17_Chr3g0121351 32.703 370 200 9 103 428 170 534 1.93e-43 160
Msa0665100 MtrunA17_Chr6g0449741 31.771 384 193 7 64 402 255 614 3.83e-43 160
Msa0665100 MtrunA17_Chr1g0176041 32.951 349 191 8 97 404 173 519 1.59e-42 158
Msa0665100 MtrunA17_Chr2g0310581 31.395 344 203 10 103 418 78 416 2.28e-42 156
Msa0665100 MtrunA17_Chr7g0271121 31.515 330 184 7 103 398 131 452 7.09e-40 152
Msa0665100 MtrunA17_Chr1g0193491 29.315 365 210 11 103 426 139 496 7.47e-40 151
Msa0665100 MtrunA17_Chr2g0300291 30.390 385 215 11 77 416 128 504 7.92e-40 152
Msa0665100 MtrunA17_Chr3g0098121 29.147 422 239 12 28 416 120 514 5.92e-39 149
Msa0665100 MtrunA17_Chr7g0263771 30.838 334 194 7 97 402 152 476 2.97e-38 146
Msa0665100 MtrunA17_Chr1g0200181 31.231 333 194 9 103 402 170 500 5.46e-38 145
Msa0665100 MtrunA17_Chr1g0179761 27.315 432 220 12 56 427 78 475 5.98e-38 144
Msa0665100 MtrunA17_Chr2g0293631 27.763 389 222 10 43 402 486 844 7.76e-37 144
Msa0665100 MtrunA17_Chr5g0442191 30.458 371 200 13 103 432 106 459 5.24e-36 139
Msa0665100 MtrunA17_Chr3g0095031 29.282 362 203 11 103 426 115 461 1.61e-35 138
Msa0665100 MtrunA17_Chr6g0449911 29.396 364 216 12 66 400 160 511 1.62e-35 139
Msa0665100 MtrunA17_Chr7g0270131 28.877 374 212 13 59 402 233 582 4.09e-35 138
Msa0665100 MtrunA17_Chr1g0157691 29.577 355 207 11 103 424 172 516 8.57e-35 136
Msa0665100 MtrunA17_Chr2g0277821 30.422 332 194 9 103 402 529 855 5.60e-34 135
Msa0665100 MtrunA17_Chr3g0114081 27.027 407 224 9 53 409 9 392 6.87e-33 130
Msa0665100 MtrunA17_Chr8g0347161 26.866 402 225 11 47 402 86 464 9.28e-33 130
Msa0665100 MtrunA17_Chr8g0347151 26.116 448 257 14 38 436 183 605 3.14e-32 129
Msa0665100 MtrunA17_Chr8g0347171 26.923 390 221 11 54 402 156 522 9.78e-32 127
Msa0665100 MtrunA17_Chr4g0040761 29.091 330 199 12 103 403 44 367 7.57e-31 125
Msa0665100 MtrunA17_Chr6g0461751 27.316 421 240 12 49 433 131 521 1.21e-30 124
Msa0665100 MtrunA17_Chr8g0386451 28.226 372 218 8 93 425 303 664 8.90e-30 122
Msa0665100 MtrunA17_Chr8g0342851 28.354 328 207 5 108 425 3 312 1.25e-29 117
Msa0665100 MtrunA17_Chr5g0409981 29.360 344 198 8 97 402 121 457 1.27e-29 120
Msa0665100 MtrunA17_Chr2g0307471 27.221 349 216 9 88 401 97 442 2.35e-29 120
Msa0665100 MtrunA17_Chr4g0062301 27.989 368 202 13 70 401 109 449 5.17e-29 119
Msa0665100 MtrunA17_Chr5g0443991 26.989 352 207 12 89 401 87 427 3.50e-28 117
Msa0665100 MtrunA17_Chr6g0475251 27.864 323 187 10 114 398 139 453 1.38e-26 112
Msa0665100 MtrunA17_Chr2g0309551 24.582 419 233 7 83 421 114 529 1.20e-25 109
Msa0665100 MtrunA17_Chr4g0025141 33.155 187 111 4 254 427 38 223 4.69e-24 100
Msa0665100 MtrunA17_Chr4g0034411 27.557 352 204 16 89 401 87 426 5.52e-24 105
Msa0665100 MtrunA17_Chr1g0169331 25.000 400 237 11 88 429 1 395 5.91e-24 103
Msa0665100 MtrunA17_Chr6g0466611 25.515 388 220 14 59 402 143 505 1.39e-23 103
Msa0665100 MtrunA17_Chr1g0204391 25.882 340 188 9 114 398 80 410 3.52e-23 102
Msa0665100 MtrunA17_Chr4g0058591 26.780 295 181 8 97 361 221 510 9.92e-22 97.4
Msa0665100 MtrunA17_Chr5g0429221 25.348 359 233 9 83 412 8 360 1.17e-21 96.7
Msa0665100 MtrunA17_Chr3g0137881 78.378 74 13 2 13 84 1 73 3.38e-20 84.7
Msa0665100 MtrunA17_Chr1g0149261 84.615 52 6 1 35 84 22 73 4.08e-20 84.7
Msa0665100 MtrunA17_Chr7g0236831 29.012 162 112 1 274 435 452 610 1.19e-16 82.4
Msa0665100 MtrunA17_Chr7g0236831 29.224 219 107 8 58 251 163 358 3.19e-16 81.3
Msa0665100 MtrunA17_Chr4g0039471 33.974 156 97 5 103 255 248 400 3.68e-16 80.1
Msa0665100 MtrunA17_Chr4g0025101 33.333 108 58 1 334 427 92 199 2.40e-15 74.7
Msa0665100 MtrunA17_Chr4g0029191 30.657 137 89 3 269 401 331 465 1.15e-14 76.3
Msa0665100 MtrunA17_Chr4g0029191 31.818 176 96 8 97 255 64 232 2.38e-11 65.9
Msa0665100 MtrunA17_Chr4g0025131 30.303 198 110 7 47 239 44 218 1.18e-14 74.3
Msa0665100 MtrunA17_Chr8g0349951 32.164 171 86 5 59 228 11 152 1.58e-14 70.9
Msa0665100 MtrunA17_Chr2g0301281 28.571 140 94 3 269 404 328 465 4.69e-14 74.3
Msa0665100 MtrunA17_Chr8g0354761 21.365 337 225 7 99 401 29 359 4.46e-12 67.8
Msa0665100 MtrunA17_Chr4g0004301 36.752 117 67 3 291 402 327 441 8.19e-12 67.0
Msa0665100 MtrunA17_Chr4g0062321 27.411 197 109 6 199 366 42 233 2.75e-11 63.5
Msa0665100 MtrunA17_Chr5g0434301 35.897 117 68 3 291 402 327 441 3.73e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0665100 AT5G11170.1 81.879 447 38 3 13 436 1 427 0.0 704
Msa0665100 AT5G11200.1 81.879 447 38 3 13 436 1 427 0.0 704
Msa0665100 AT5G11170.2 86.337 344 25 1 115 436 1 344 0.0 610
Msa0665100 AT5G11200.2 54.767 493 147 11 13 436 1 486 3.31e-141 413
Msa0665100 AT5G11200.3 79.675 246 29 2 13 257 1 226 5.44e-125 370
Msa0665100 AT5G11200.3 91.979 187 15 0 250 436 282 468 7.16e-118 352
Msa0665100 AT3G61240.2 34.071 452 247 9 6 433 72 496 4.44e-73 238
Msa0665100 AT3G61240.1 34.071 452 247 9 6 433 72 496 4.44e-73 238
Msa0665100 AT2G45810.1 34.783 437 234 9 21 433 117 526 3.67e-72 236
Msa0665100 AT4G00660.1 35.402 435 230 9 23 433 96 503 1.55e-71 234
Msa0665100 AT4G00660.2 35.402 435 230 9 23 433 96 503 1.55e-71 234
Msa0665100 AT1G72730.1 35.052 388 204 8 64 428 48 410 7.45e-63 209
Msa0665100 AT3G13920.1 34.913 401 212 9 51 428 34 408 8.27e-62 206
Msa0665100 AT3G13920.3 34.913 401 212 9 51 428 24 398 1.04e-61 206
Msa0665100 AT1G54270.1 34.663 401 213 9 51 428 34 408 1.41e-59 200
Msa0665100 AT3G13920.4 36.056 355 199 7 97 428 54 403 1.80e-59 200
Msa0665100 AT3G19760.1 32.071 396 219 9 57 428 35 404 3.71e-59 199
Msa0665100 AT3G13920.2 35.467 375 194 8 51 402 34 383 3.10e-58 197
Msa0665100 AT3G13920.5 35.467 375 194 8 51 402 38 387 3.76e-58 197
Msa0665100 AT1G54270.2 35.775 355 200 7 97 428 54 403 1.42e-57 195
Msa0665100 AT1G51380.1 32.051 390 217 10 59 425 24 388 6.28e-55 187
Msa0665100 AT3G53110.1 31.463 410 216 13 56 424 90 475 1.18e-48 173
Msa0665100 AT1G55150.1 30.707 368 215 11 66 404 95 451 2.73e-43 159
Msa0665100 AT1G55150.2 30.707 368 215 11 66 404 120 476 5.42e-43 159
Msa0665100 AT1G16280.1 32.110 327 192 7 103 402 84 407 5.93e-43 158
Msa0665100 AT4G16630.1 28.889 450 248 15 18 427 126 543 1.44e-41 157
Msa0665100 AT2G33730.1 31.122 392 202 8 64 410 320 688 1.77e-41 157
Msa0665100 AT5G60990.1 28.676 408 218 11 59 426 11 385 3.42e-41 152
Msa0665100 AT5G63120.2 29.491 373 210 12 59 402 167 515 4.07e-40 151
Msa0665100 AT1G28180.1 33.333 324 185 8 107 402 3 323 1.68e-39 145
Msa0665100 AT5G26742.1 30.149 335 196 6 103 404 128 457 3.17e-39 150
Msa0665100 AT5G26742.2 30.149 335 196 6 103 404 128 457 3.18e-39 150
Msa0665100 AT3G58570.1 33.724 341 183 9 103 402 172 510 4.42e-39 149
Msa0665100 AT3G01540.4 28.341 434 242 15 37 428 126 532 5.46e-39 149
Msa0665100 AT3G01540.2 28.341 434 242 15 37 428 126 532 5.46e-39 149
Msa0665100 AT3G01540.3 28.341 434 242 15 37 428 126 532 5.46e-39 149
Msa0665100 AT3G01540.1 28.341 434 242 15 37 428 126 532 6.21e-39 149
Msa0665100 AT3G58510.1 31.148 366 208 11 103 428 177 538 7.91e-39 148
Msa0665100 AT3G58510.3 31.148 366 208 11 103 428 177 538 7.91e-39 148
Msa0665100 AT3G58510.2 31.148 366 208 11 103 428 177 538 7.91e-39 148
Msa0665100 AT5G26742.3 30.581 327 189 6 111 404 43 364 1.30e-38 148
Msa0665100 AT2G42520.2 30.563 373 215 9 97 428 179 548 1.06e-37 145
Msa0665100 AT2G42520.1 30.563 373 215 9 97 428 179 548 1.06e-37 145
Msa0665100 AT2G42520.3 30.563 373 215 9 97 428 179 548 1.06e-37 145
Msa0665100 AT4G33370.1 30.504 377 207 10 59 402 99 453 1.20e-37 144
Msa0665100 AT3G06480.1 28.608 388 220 9 43 402 426 784 2.31e-36 142
Msa0665100 AT5G51280.1 31.343 335 191 10 103 402 172 502 5.09e-36 140
Msa0665100 AT5G14610.1 28.610 374 213 11 56 400 228 576 5.45e-36 140
Msa0665100 AT1G20920.2 30.120 332 195 10 103 402 217 543 1.51e-35 140
Msa0665100 AT5G14610.2 29.111 371 209 11 59 400 163 508 1.99e-35 139
Msa0665100 AT5G14610.6 29.111 371 209 11 59 400 163 508 2.31e-35 139
Msa0665100 AT5G14610.5 29.111 371 209 11 59 400 171 516 2.39e-35 139
Msa0665100 AT1G20920.4 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT1G20920.6 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT1G20920.3 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT1G20920.7 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT1G20920.5 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT1G20920.1 30.120 332 195 10 103 402 555 881 3.23e-35 139
Msa0665100 AT2G47330.1 29.147 422 228 16 27 402 183 579 6.72e-35 138
Msa0665100 AT5G14610.7 30.330 333 198 10 97 400 50 377 8.19e-35 135
Msa0665100 AT5G14610.3 30.330 333 198 10 97 400 50 377 8.19e-35 135
Msa0665100 AT1G31970.1 30.725 345 193 7 97 402 134 471 1.58e-34 135
Msa0665100 AT5G08610.1 27.146 431 243 9 35 425 360 759 3.67e-34 135
Msa0665100 AT1G71370.1 28.614 339 207 6 97 401 36 373 4.15e-34 134
Msa0665100 AT5G63630.1 27.083 384 218 9 59 402 56 417 3.78e-33 131
Msa0665100 AT5G63630.2 27.083 384 218 9 59 402 250 611 6.11e-33 132
Msa0665100 AT3G22330.1 27.901 362 206 11 103 425 130 475 9.06e-33 131
Msa0665100 AT3G22310.2 28.729 362 205 10 103 426 142 488 9.48e-33 130
Msa0665100 AT3G22310.1 28.729 362 205 10 103 426 142 488 1.04e-32 130
Msa0665100 AT3G09720.2 29.810 369 211 11 66 402 133 485 2.03e-31 126
Msa0665100 AT3G09720.1 29.810 369 211 11 66 402 133 485 2.03e-31 126
Msa0665100 AT1G77030.1 26.882 372 219 12 59 402 30 376 7.37e-31 126
Msa0665100 AT5G08620.1 25.542 415 248 9 28 402 50 443 1.10e-30 124
Msa0665100 AT1G12770.2 25.722 381 204 6 97 399 130 509 2.49e-30 123
Msa0665100 AT1G12770.1 25.722 381 204 6 97 399 130 509 2.49e-30 123
Msa0665100 AT5G05450.1 26.608 342 207 6 103 401 42 382 3.01e-30 123
Msa0665100 AT3G18600.1 29.310 348 202 14 88 398 96 436 1.71e-29 121
Msa0665100 AT3G09620.1 31.935 310 189 8 103 402 422 719 3.32e-28 118
Msa0665100 AT3G09620.2 31.935 310 189 8 103 402 423 720 3.38e-28 118
Msa0665100 AT3G02065.3 27.415 383 208 12 59 402 112 463 5.34e-28 116
Msa0665100 AT3G02065.2 27.415 383 208 12 59 402 112 463 5.34e-28 116
Msa0665100 AT5G62190.1 27.078 373 222 10 103 434 122 485 5.65e-28 117
Msa0665100 AT3G02065.1 28.869 336 189 11 106 402 2 326 6.97e-28 114
Msa0665100 AT5G65900.1 27.811 338 199 12 97 398 174 502 4.86e-27 114
Msa0665100 AT1G63250.1 26.957 345 201 10 103 402 354 692 2.08e-25 109
Msa0665100 AT4G09730.1 28.319 339 194 12 108 402 143 476 1.47e-24 107
Msa0665100 AT5G63120.3 27.515 338 190 13 59 367 167 478 1.05e-23 103
Msa0665100 AT5G63120.4 27.515 338 190 13 59 367 167 478 1.05e-23 103
Msa0665100 AT5G63120.5 27.515 338 190 13 59 367 167 478 1.05e-23 103
Msa0665100 AT5G63120.1 27.410 332 188 12 59 361 167 474 1.16e-23 103
Msa0665100 AT5G54910.1 27.647 340 197 14 103 404 97 425 3.02e-23 103
Msa0665100 AT1G51380.2 29.520 271 144 9 59 306 24 270 4.17e-23 99.0
Msa0665100 AT2G07750.1 26.377 345 203 11 103 402 401 739 5.17e-23 102
Msa0665100 AT3G06480.2 26.404 356 205 9 43 370 426 752 1.24e-22 101
Msa0665100 AT5G19210.2 25.595 336 199 8 103 390 102 434 4.20e-22 99.0
Msa0665100 AT5G14610.4 26.891 357 205 12 46 373 158 487 5.74e-21 95.5
Msa0665100 AT1G51380.4 30.303 198 113 5 59 255 24 197 3.53e-18 85.1
Msa0665100 AT1G51380.3 30.303 198 113 5 59 255 24 197 5.01e-18 84.7
Msa0665100 AT4G34910.1 23.342 407 214 9 58 390 47 429 6.17e-18 86.7
Msa0665100 AT1G71280.2 28.322 286 172 9 97 363 37 308 1.11e-17 84.3
Msa0665100 AT1G71280.1 28.322 286 172 9 97 363 37 308 2.67e-17 84.3
Msa0665100 AT3G16840.2 33.333 162 105 2 274 435 480 638 3.72e-17 84.7
Msa0665100 AT3G16840.2 29.204 226 113 7 57 258 191 393 3.46e-13 72.4
Msa0665100 AT3G16840.1 33.333 162 105 2 274 435 479 637 3.85e-17 84.7
Msa0665100 AT3G16840.1 29.204 226 113 7 57 258 190 392 3.81e-13 72.0
Msa0665100 AT4G15850.1 38.793 116 68 1 291 403 329 444 2.30e-16 81.6
Msa0665100 AT2G40700.1 40.698 86 49 1 316 401 371 454 6.36e-15 77.4
Msa0665100 AT2G40700.1 31.875 160 100 4 97 249 51 208 4.82e-11 65.1
Msa0665100 AT5G19210.1 23.438 256 153 5 177 390 23 277 2.19e-11 65.1
Msa0665100 AT5G19210.3 23.438 256 153 5 177 390 23 277 2.19e-11 65.1

Find 117 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATCACTGCTTGTTTA+AGG 0.112845 4_4:-4432096 Msa0665100:three_prime_UTR
CTACATTGTATTTGTCTATC+TGG 0.239942 4_4:+4432263 None:intergenic
TATCAACAGGGAAGAGAATA+TGG 0.246102 4_4:-4439179 Msa0665100:CDS
CTTCCCTGTTGATAAGGGTT+AGG 0.252676 4_4:+4439188 None:intergenic
CTCCGAGCCATTGTAGATTC+AGG 0.254688 4_4:-4437417 Msa0665100:CDS
GACTCTTCATGGTCTTGTTC+AGG 0.261990 4_4:-4434941 Msa0665100:intron
CCATCAATTTGCATACATTC+TGG 0.285699 4_4:-4434690 Msa0665100:CDS
GTCATTTGCCAAGCAAAATC+TGG 0.314855 4_4:-4436405 Msa0665100:CDS
CACAAGAGAACTAGCTTATC+AGG 0.318557 4_4:-4436295 Msa0665100:intron
GTGGGTAGAGCTGGTAGATT+TGG 0.332706 4_4:-4433047 Msa0665100:CDS
TATTCTCTTCCCTGTTGATA+AGG 0.349616 4_4:+4439182 None:intergenic
AAGACCATGAAGAGTCAATT+TGG 0.351581 4_4:+4434948 None:intergenic
CGAACAAAGTACTATACTTT+AGG 0.362674 4_4:+4432143 None:intergenic
CTACGTTGGGATCCATAGTT+CGG 0.364465 4_4:-4437472 Msa0665100:CDS
CACATTGTTGTTGGAACACC+TGG 0.373009 4_4:-4436003 Msa0665100:CDS
ATTCTCTTCCCTGTTGATAA+GGG 0.376394 4_4:+4439183 None:intergenic
CCAGAATGTATGCAAATTGA+TGG 0.376590 4_4:+4434690 None:intergenic
TGACTCTGAAGTTCTTAATC+AGG 0.377300 4_4:-4432985 Msa0665100:intron
GTGGAGGTGTCAATTTGTTC+AGG 0.377618 4_4:+4432812 None:intergenic
TTCCCTGTTGATAAGGGTTA+GGG 0.382305 4_4:+4439189 None:intergenic
CAGCAAATTGATCCTGTTCC+TGG 0.384946 4_4:-4436345 Msa0665100:CDS
GTCCATTCCTAAAATTGCTT+GGG 0.387301 4_4:+4436428 None:intergenic
AAACCCTAACCCTTATCAAC+AGG 0.392545 4_4:-4439192 Msa0665100:CDS
CAAGGTCCTTATCTCTAGTC+AGG 0.399693 4_4:+4435968 None:intergenic
ACATCATCACTTGTTTATCA+TGG 0.400130 4_4:+4435747 None:intergenic
TAGGTTTGAGGTTGATATAA+AGG 0.405007 4_4:-4432840 Msa0665100:CDS
GAGGCCAAATTGACTCTTCA+TGG 0.406230 4_4:-4434952 Msa0665100:CDS
GTCACAAAACTTGATCAATT+AGG 0.410712 4_4:+4432496 None:intergenic
AGTCTCGAAATCCCGAACTA+TGG 0.410983 4_4:+4437460 None:intergenic
TGTTGTGCAGGGGCTACGTT+GGG 0.411662 4_4:-4437485 Msa0665100:intron
TACGTTGGGATCCATAGTTC+GGG 0.412375 4_4:-4437471 Msa0665100:CDS
TCCGAGCCATTGTAGATTCA+GGG 0.416662 4_4:-4437416 Msa0665100:CDS
AATTGATCCTGTTCCTGGTC+AGG 0.417735 4_4:-4436340 Msa0665100:CDS
AACTGTTAGGTGGGTAGAGC+TGG 0.421562 4_4:-4433056 Msa0665100:intron
GTATAGTACTTTGTTCGTGC+TGG 0.427061 4_4:-4432137 Msa0665100:three_prime_UTR
CAGATAGACAAATACAATGT+AGG 0.437325 4_4:-4432262 Msa0665100:three_prime_UTR
CAAATGATCTGTTGCCGACT+GGG 0.439778 4_4:-4432455 Msa0665100:three_prime_UTR
TTCAGCTTACGATTCTTCTC+TGG 0.442230 4_4:+4434813 None:intergenic
ACAAATGATCTGTTGCCGAC+TGG 0.447494 4_4:-4432456 Msa0665100:three_prime_UTR
GGAGAAGCTCTGGTTTCAAC+AGG 0.450921 4_4:+4437436 None:intergenic
CGTCCATTCCTAAAATTGCT+TGG 0.451912 4_4:+4436427 None:intergenic
AGCAATTACCCTGTGAAGAT+AGG 0.456356 4_4:+4433205 None:intergenic
CATCATCACTTGTTTATCAT+GGG 0.463946 4_4:+4435748 None:intergenic
ATCATCTACATAAATTTCCA+TGG 0.469432 4_4:+4434975 None:intergenic
AGATAGGTATCAGCAGAATC+AGG 0.470818 4_4:+4433221 None:intergenic
TCAGGTGCAATCTAGGTTTG+AGG 0.476362 4_4:-4432852 Msa0665100:intron
GCTGCAACCTGACCAGGAAC+AGG 0.478885 4_4:+4436333 None:intergenic
TGCTGAACCTCTCAACTTCG+TGG 0.490700 4_4:+4436112 None:intergenic
TTTCAGATTGAAGCGATACA+AGG 0.493825 4_4:-4433342 Msa0665100:intron
GGCTCGAGTGCATATTCCAT+TGG 0.494009 4_4:-4432075 Msa0665100:three_prime_UTR
ACAATGGCTCGGAGAAGCTC+TGG 0.495080 4_4:+4437426 None:intergenic
CTGCTGATACCTATCTTCAC+AGG 0.495663 4_4:-4433214 Msa0665100:CDS
ACAAAGTACTATACTTTAGG+AGG 0.502365 4_4:+4432146 None:intergenic
GAGTGCCCACACATTGTTGT+TGG 0.508601 4_4:-4436012 Msa0665100:CDS
TATAGTACTTTGTTCGTGCT+GGG 0.514544 4_4:-4432136 Msa0665100:three_prime_UTR
CTGGAATGTCACAAGAAGAA+AGG 0.515744 4_4:-4434671 Msa0665100:intron
GATCTGTTGCCGACTGGGGA+TGG 0.516444 4_4:-4432450 Msa0665100:three_prime_UTR
CTATGGTGGTGTCAACATCA+AGG 0.524822 4_4:-4436058 Msa0665100:CDS
AGAAACCTTTCTAAAACCAA+TGG 0.526062 4_4:+4432059 None:intergenic
GCTGGTAGATTTGGCACCAA+GGG 0.527211 4_4:-4433038 Msa0665100:CDS
ACAAGTGCTGCAACCTGACC+AGG 0.529516 4_4:+4436327 None:intergenic
TTGTTGTGCAGGGGCTACGT+TGG 0.530806 4_4:-4437486 Msa0665100:intron
AGATAGACAAATACAATGTA+GGG 0.538975 4_4:-4432261 Msa0665100:three_prime_UTR
TTGCCAAGCAAAATCTGGGA+TGG 0.544090 4_4:-4436400 Msa0665100:CDS
CTGACTAGAGATAAGGACCT+TGG 0.544589 4_4:-4435967 Msa0665100:CDS
TAGTAAAACTTGCCTTCTGA+AGG 0.545476 4_4:+4437384 None:intergenic
GGGTTTGAGCATCCTTCAGA+AGG 0.549144 4_4:-4437396 Msa0665100:CDS
TGATGAGTGTGACAAGATGC+TGG 0.551103 4_4:-4435917 Msa0665100:CDS
TCATTTGCCAAGCAAAATCT+GGG 0.556430 4_4:-4436404 Msa0665100:CDS
AGCTGGTAGATTTGGCACCA+AGG 0.557173 4_4:-4433039 Msa0665100:CDS
CTCGTGGCAACCGATTTAGT+AGG 0.561671 4_4:-4433293 Msa0665100:CDS
GACAAGATGCTGGAATCACT+TGG 0.563752 4_4:-4435907 Msa0665100:intron
CAGAATGTATGCAAATTGAT+GGG 0.563982 4_4:+4434691 None:intergenic
TCTTGCCCTGACTAGAGATA+AGG 0.564398 4_4:-4435974 Msa0665100:CDS
TGCCAAGCAAAATCTGGGAT+GGG 0.564980 4_4:-4436399 Msa0665100:CDS
TCCATTCCTAAAATTGCTTG+GGG 0.565327 4_4:+4436429 None:intergenic
GGCAACCGATTTAGTAGGGA+GGG 0.566914 4_4:-4433288 Msa0665100:CDS
AAAAGTAATTGCAAGCCCCT+TGG 0.567368 4_4:+4433022 None:intergenic
CGATACAAGGGCTTCAAAGA+GGG 0.568834 4_4:-4433329 Msa0665100:CDS
TCGTGGCAACCGATTTAGTA+GGG 0.570668 4_4:-4433292 Msa0665100:CDS
ACCCTGAATCTACAATGGCT+CGG 0.572434 4_4:+4437415 None:intergenic
GGTGTTCCAACAACAATGTG+TGG 0.577454 4_4:+4436006 None:intergenic
ATCAACAGGGAAGAGAATAT+GGG 0.578003 4_4:-4439178 Msa0665100:CDS
CAACCGATTTAGTAGGGAGG+GGG 0.579596 4_4:-4433286 Msa0665100:CDS
TCATCTACATAAATTTCCAT+GGG 0.581419 4_4:+4434976 None:intergenic
GCAACCGATTTAGTAGGGAG+GGG 0.585593 4_4:-4433287 Msa0665100:CDS
AGATTTGCCACGAAGTTGAG+AGG 0.588345 4_4:-4436119 Msa0665100:CDS
ATGCAGGAGCATACAAAACA+TGG 0.599811 4_4:+4432297 None:intergenic
GGAAATTTATGTAGATGATG+AGG 0.602038 4_4:-4434971 Msa0665100:CDS
AGAAGCAAAGAAAATTGTAG+TGG 0.603376 4_4:+4436476 None:intergenic
GCGATACAAGGGCTTCAAAG+AGG 0.604199 4_4:-4433330 Msa0665100:CDS
AAGGTCCTTATCTCTAGTCA+GGG 0.605894 4_4:+4435969 None:intergenic
CTCAAACCCTGAATCTACAA+TGG 0.606652 4_4:+4437410 None:intergenic
ACCTTGGTTTGAAGAATGTG+AGG 0.606908 4_4:-4435951 Msa0665100:CDS
GTCAGGGCAAGAATCCTCCC+AGG 0.611803 4_4:+4435985 None:intergenic
ATCATCACTTGTTTATCATG+GGG 0.613006 4_4:+4435749 None:intergenic
AACATTAACAACGTGAACAA+CGG 0.613413 4_4:+4432190 None:intergenic
GATACAAGGGCTTCAAAGAG+GGG 0.617527 4_4:-4433328 Msa0665100:CDS
GTGTTCCAACAACAATGTGT+GGG 0.623994 4_4:+4436007 None:intergenic
GCCTCACATTCTTCAAACCA+AGG 0.633068 4_4:+4435950 None:intergenic
TTCAGATTGAAGCGATACAA+GGG 0.636996 4_4:-4433341 Msa0665100:intron
AAGTATCTTACTGTATGTGG+AGG 0.637443 4_4:+4432796 None:intergenic
CAAAGTACTATACTTTAGGA+GGG 0.640396 4_4:+4432147 None:intergenic
GATAAGCTAGTTCTCTTGTG+TGG 0.648872 4_4:+4436298 None:intergenic
AGACAAATACAATGTAGGGT+CGG 0.653247 4_4:-4432257 Msa0665100:three_prime_UTR
CTGGTAGATTTGGCACCAAG+GGG 0.659086 4_4:-4433037 Msa0665100:CDS
TGCTGATACCTATCTTCACA+GGG 0.659100 4_4:-4433213 Msa0665100:intron
AAATGATCTGTTGCCGACTG+GGG 0.667196 4_4:-4432454 Msa0665100:three_prime_UTR
CAGATCATATATACTTACTG+AGG 0.671770 4_4:-4436505 Msa0665100:CDS
ACATTGTTGTTGGAACACCT+GGG 0.674278 4_4:-4436002 Msa0665100:CDS
AACCCTAACCCTTATCAACA+GGG 0.675136 4_4:-4439191 Msa0665100:CDS
GGGGAAGCAGAGAATTCTCG+TGG 0.676806 4_4:-4433309 Msa0665100:CDS
ACAACAAATCCATCCCCAGT+CGG 0.685926 4_4:+4432441 None:intergenic
GAAAGATACTGAAGTTTACG+AGG 0.689385 4_4:-4439149 Msa0665100:CDS
CCATTCCTAAAATTGCTTGG+GGG 0.689622 4_4:+4436430 None:intergenic
TGGCAACCGATTTAGTAGGG+AGG 0.690164 4_4:-4433289 Msa0665100:CDS
TTGTTGTTGGAACACCTGGG+AGG 0.722510 4_4:-4435999 Msa0665100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCATTTAATTTTGTAT+GGG - chr4_4:4435673-4435692 Msa0665100:intron 10.0%
!! CAAAAAAAAAAAATCATATT+TGG + chr4_4:4435766-4435785 None:intergenic 10.0%
!!! TAAATAATATCATGTTATTT+TGG - chr4_4:4435993-4436012 Msa0665100:CDS 10.0%
!!! AAACTAATAGATTTTTTTTT+AGG - chr4_4:4437737-4437756 Msa0665100:intron 10.0%
!!! AAAAAAAACTAACTTTTTGA+CGG + chr4_4:4432153-4432172 None:intergenic 15.0%
!! TAATAAATATGGTTTAAGTA+AGG - chr4_4:4432887-4432906 Msa0665100:intron 15.0%
!!! TTTTTTTCTTTCAATTAATC+AGG - chr4_4:4434611-4434630 Msa0665100:intron 15.0%
!! ACAAAATTAAATGAATATGA+GGG + chr4_4:4435671-4435690 None:intergenic 15.0%
!! TACAAAATTAAATGAATATG+AGG + chr4_4:4435672-4435691 None:intergenic 15.0%
!!! CATATTCATTTAATTTTGTA+TGG - chr4_4:4435672-4435691 Msa0665100:intron 15.0%
!! AAATGCATTTAAACAAAATA+TGG + chr4_4:4435905-4435924 None:intergenic 15.0%
!! TACAAATTAATACAGAAAAA+AGG + chr4_4:4435975-4435994 None:intergenic 15.0%
!! TGCTAAAAATATAGTAATAT+AGG + chr4_4:4436731-4436750 None:intergenic 15.0%
!!! TATTACTATATTTTTAGCAT+TGG - chr4_4:4436732-4436751 Msa0665100:intron 15.0%
!!! ATTGTTGACTTTAATTTTTA+TGG - chr4_4:4436979-4436998 Msa0665100:intron 15.0%
!!! TCTAAAATCATATTTATCAA+TGG + chr4_4:4437519-4437538 None:intergenic 15.0%
!! ATTCTCTTCTATTAATTTAA+GGG - chr4_4:4437711-4437730 Msa0665100:intron 15.0%
!!! TTTTTTTAGGTGAAAAATTA+AGG - chr4_4:4437750-4437769 Msa0665100:intron 15.0%
!!! TTTTTTAGGTGAAAAATTAA+GGG - chr4_4:4437751-4437770 Msa0665100:intron 15.0%
!!! TCTAGTTTAAATATAGTTTT+TGG - chr4_4:4438050-4438069 Msa0665100:intron 15.0%
!!! CTAGTTTAAATATAGTTTTT+GGG - chr4_4:4438051-4438070 Msa0665100:intron 15.0%
!!! TACTTTTTCTTAATAGTTTA+TGG - chr4_4:4438432-4438451 Msa0665100:intron 15.0%
!! TTTAAACTGTAATGAAAAAT+AGG - chr4_4:4438842-4438861 Msa0665100:intron 15.0%
!! TTAAACTGTAATGAAAAATA+GGG - chr4_4:4438843-4438862 Msa0665100:intron 15.0%
!!! TTTTTTCCTTCTTCTTTTTA+TGG - chr4_4:4432168-4432187 Msa0665100:three_prime_UTR 20.0%
!! ATAAATAGAGAAATATCCAA+TGG - chr4_4:4432417-4432436 Msa0665100:three_prime_UTR 20.0%
!! TATTATTATCATACTTCCAT+TGG + chr4_4:4432436-4432455 None:intergenic 20.0%
!! ATTCAATTTGTGTAATTGAA+TGG - chr4_4:4432572-4432591 Msa0665100:intron 20.0%
!! TTCAATTTGTGTAATTGAAT+GGG - chr4_4:4432573-4432592 Msa0665100:intron 20.0%
!! ATTTGTAGTAATTAGTATAC+TGG - chr4_4:4432827-4432846 Msa0665100:CDS 20.0%
!! ACACGTTTCATTAATAAATA+TGG - chr4_4:4432876-4432895 Msa0665100:intron 20.0%
!!! AAAACCTAATATTACTTTTG+AGG + chr4_4:4433246-4433265 None:intergenic 20.0%
!!! TAATATTAGGTTTTCATTTG+AGG - chr4_4:4433252-4433271 Msa0665100:CDS 20.0%
!! AGTAAATCAAATTCTTGATA+TGG + chr4_4:4433445-4433464 None:intergenic 20.0%
!!! TATCAAGAATTTGATTTACT+TGG - chr4_4:4433445-4433464 Msa0665100:intron 20.0%
!!! AGTCATTTTAGCATTAATTA+TGG - chr4_4:4433487-4433506 Msa0665100:intron 20.0%
!!! TTTTAGCATTAATTATGGTT+AGG - chr4_4:4433492-4433511 Msa0665100:intron 20.0%
!! TTTAGCATTAATTATGGTTA+GGG - chr4_4:4433493-4433512 Msa0665100:intron 20.0%
!! AAATCAATCTAACAATATAG+TGG + chr4_4:4433624-4433643 None:intergenic 20.0%
!! AGTGTAAAATATATTGAGAA+CGG + chr4_4:4434013-4434032 None:intergenic 20.0%
!! TATGAATACATCACAAAAAT+TGG - chr4_4:4434652-4434671 Msa0665100:intron 20.0%
!! TACATCAAGAAAATTAAATG+AGG + chr4_4:4435620-4435639 None:intergenic 20.0%
!! CAAAATTAAATGAATATGAG+GGG + chr4_4:4435670-4435689 None:intergenic 20.0%
!!! TATTTTGAGAGCATTTAATA+AGG - chr4_4:4435705-4435724 Msa0665100:intron 20.0%
!!! ATTTGGTAGTCTAAAATATA+AGG + chr4_4:4435749-4435768 None:intergenic 20.0%
!!! TTTGTTTAAATGCATTTTGT+TGG - chr4_4:4435908-4435927 Msa0665100:CDS 20.0%
!! TTTGCAAATTAATACAAAGA+AGG + chr4_4:4436127-4436146 None:intergenic 20.0%
!!! AAATAAAAACGCAGTTATTT+TGG + chr4_4:4436163-4436182 None:intergenic 20.0%
!! GAAAGATATCAACAATAATA+GGG + chr4_4:4436319-4436338 None:intergenic 20.0%
!! AGAAAGATATCAACAATAAT+AGG + chr4_4:4436320-4436339 None:intergenic 20.0%
!!! TTTTGACAAAAATAACAACT+TGG + chr4_4:4436450-4436469 None:intergenic 20.0%
!! GATTCTCTTCTATTAATTTA+AGG - chr4_4:4437710-4437729 Msa0665100:intron 20.0%
!! ATAAGCATATAAAGATAGAA+GGG + chr4_4:4438125-4438144 None:intergenic 20.0%
!! TGAAAATAAAGTTTAGCTAT+TGG + chr4_4:4438341-4438360 None:intergenic 20.0%
!!! AATAGCTAAACTTTATTTTC+AGG - chr4_4:4438340-4438359 Msa0665100:intron 20.0%
! TTGATTCCATAAAAAGAAGA+AGG + chr4_4:4432177-4432196 None:intergenic 25.0%
! AAACTTTGAATGTTAGTTGT+CGG - chr4_4:4432682-4432701 Msa0665100:intron 25.0%
!!! TTTTTTAACTGTTGCAGATT+TGG - chr4_4:4432760-4432779 Msa0665100:intron 25.0%
!!! TTTTTAACTGTTGCAGATTT+GGG - chr4_4:4432761-4432780 Msa0665100:intron 25.0%
! AGATATAACTAAATCACCAA+AGG + chr4_4:4432788-4432807 None:intergenic 25.0%
!!! AGTAATTAGTATACTGGTTT+TGG - chr4_4:4432833-4432852 Msa0665100:CDS 25.0%
! TTATGAAAAGAGTGAAATTG+TGG - chr4_4:4432968-4432987 Msa0665100:intron 25.0%
! ACATACATGTTAGTAATAGT+GGG + chr4_4:4433137-4433156 None:intergenic 25.0%
! AATGCTATGATGCTTAAAAT+TGG + chr4_4:4433320-4433339 None:intergenic 25.0%
! GAAAACAAAGATCAACAAAT+AGG + chr4_4:4433391-4433410 None:intergenic 25.0%
!! ATGAGAGTACATATAAACAT+GGG + chr4_4:4433947-4433966 None:intergenic 25.0%
! ATGAGAATTTATAAGATGAG+AGG + chr4_4:4434227-4434246 None:intergenic 25.0%
!!! AATTTTTCAGTGATTTCTCA+AGG - chr4_4:4434336-4434355 Msa0665100:intron 25.0%
! AATACATCACAAAAATTGGT+TGG - chr4_4:4434656-4434675 Msa0665100:intron 25.0%
! TGGTAAACCTTTACATTAAA+AGG - chr4_4:4434676-4434695 Msa0665100:CDS 25.0%
!! AAAACAGCAACTTTTATATC+TGG + chr4_4:4435132-4435151 None:intergenic 25.0%
!!! ATAAAAGTTGCTGTTTTCTA+TGG - chr4_4:4435135-4435154 Msa0665100:intron 25.0%
!! AGTATTTATGTGGTAGTTTT+TGG - chr4_4:4435806-4435825 Msa0665100:intron 25.0%
! ATTCAAAACACATCACAAAT+AGG + chr4_4:4435945-4435964 None:intergenic 25.0%
! TCATCTACATAAATTTCCAT+GGG + chr4_4:4436237-4436256 None:intergenic 25.0%
! ATCATCTACATAAATTTCCA+TGG + chr4_4:4436238-4436257 None:intergenic 25.0%
!! ATTTAATGTAGTGCTGAAAA+AGG + chr4_4:4436369-4436388 None:intergenic 25.0%
! TATTATGCAAGATTATCTCT+TGG - chr4_4:4436798-4436817 Msa0665100:intron 25.0%
! ATTATGCAAGATTATCTCTT+GGG - chr4_4:4436799-4436818 Msa0665100:intron 25.0%
! CAATCTCTTACTTAATACTA+TGG + chr4_4:4436849-4436868 None:intergenic 25.0%
!!! AGAGATTGCGTTTTTTATAT+TGG - chr4_4:4436861-4436880 Msa0665100:intron 25.0%
!! TTGTAGGATTGATAGTAAAA+TGG - chr4_4:4436928-4436947 Msa0665100:intron 25.0%
! AGTTTCAAGATCTTGTAAAT+TGG - chr4_4:4437208-4437227 Msa0665100:intron 25.0%
! GTTTCAAGATCTTGTAAATT+GGG - chr4_4:4437209-4437228 Msa0665100:intron 25.0%
!! TGGATCCAACAATTTTATAA+TGG - chr4_4:4437312-4437331 Msa0665100:intron 25.0%
!! GGATCCAACAATTTTATAAT+GGG - chr4_4:4437313-4437332 Msa0665100:intron 25.0%
!! GATCCAACAATTTTATAATG+GGG - chr4_4:4437314-4437333 Msa0665100:intron 25.0%
! AATCATATTTATCAATGGCA+GGG + chr4_4:4437514-4437533 None:intergenic 25.0%
! AAATCATATTTATCAATGGC+AGG + chr4_4:4437515-4437534 None:intergenic 25.0%
! CCTATAATCATAGTTATCAA+CGG + chr4_4:4437605-4437624 None:intergenic 25.0%
! GATAAGCATATAAAGATAGA+AGG + chr4_4:4438126-4438145 None:intergenic 25.0%
!!! TTGGTTAATAAAAGCATCAA+TGG + chr4_4:4438322-4438341 None:intergenic 25.0%
!!! AAAAAGTATCTTACTGTATG+TGG + chr4_4:4438420-4438439 None:intergenic 25.0%
! TGCACAAAGTTTATTAGAAT+TGG - chr4_4:4438474-4438493 Msa0665100:intron 25.0%
!!! GCTTTATAAAGGTTTTATCT+TGG - chr4_4:4438655-4438674 Msa0665100:intron 25.0%
! TTGTCTATCTGGATAAAAAA+CGG + chr4_4:4438939-4438958 None:intergenic 25.0%
! AGATAGACAAATACAATGTA+GGG - chr4_4:4438949-4438968 Msa0665100:intron 25.0%
! ATATTATCACTGCTTGTTTA+AGG - chr4_4:4439114-4439133 Msa0665100:CDS 25.0%
!!! ATATTCCATTGGTTTTAGAA+AGG - chr4_4:4439146-4439165 Msa0665100:CDS 25.0%
TTGTGTAATTGAATGGGATA+AGG - chr4_4:4432579-4432598 Msa0665100:intron 30.0%
TACGTCAGACTTTAGTAAAT+TGG - chr4_4:4432651-4432670 Msa0665100:intron 30.0%
AACTTTGAATGTTAGTTGTC+GGG - chr4_4:4432683-4432702 Msa0665100:intron 30.0%
GTTGTATAGTTTGGTATACT+GGG + chr4_4:4433101-4433120 None:intergenic 30.0%
TGTTGTATAGTTTGGTATAC+TGG + chr4_4:4433102-4433121 None:intergenic 30.0%
! ATGTTAGTAATAGTGGGATA+AGG + chr4_4:4433131-4433150 None:intergenic 30.0%
GACATACATGTTAGTAATAG+TGG + chr4_4:4433138-4433157 None:intergenic 30.0%
TACTAACATGTATGTCTGAA+TGG - chr4_4:4433142-4433161 Msa0665100:intron 30.0%
TGCACCTCAAAAGTAATATT+AGG - chr4_4:4433239-4433258 Msa0665100:CDS 30.0%
TTAAGCATCATAGCATTAAC+TGG - chr4_4:4433323-4433342 Msa0665100:CDS 30.0%
TCAAATTCTTGATATGGACT+AGG + chr4_4:4433439-4433458 None:intergenic 30.0%
ATGCTAAAATGACTATAGAC+CGG + chr4_4:4433481-4433500 None:intergenic 30.0%
!! CTAACAATATAGTGGATAGT+TGG + chr4_4:4433616-4433635 None:intergenic 30.0%
ACAAAAGAAAATACAGAGTG+AGG + chr4_4:4433708-4433727 None:intergenic 30.0%
!! TGTATTTTCTTTTGTTGTGC+AGG - chr4_4:4433713-4433732 Msa0665100:intron 30.0%
!! GTATTTTCTTTTGTTGTGCA+GGG - chr4_4:4433714-4433733 Msa0665100:intron 30.0%
!! TATTTTCTTTTGTTGTGCAG+GGG - chr4_4:4433715-4433734 Msa0665100:intron 30.0%
GACTATACTGAATCATGTAA+TGG + chr4_4:4433859-4433878 None:intergenic 30.0%
! TCTACAGACTTCTTATGTTT+TGG - chr4_4:4433887-4433906 Msa0665100:intron 30.0%
! CTACAGACTTCTTATGTTTT+GGG - chr4_4:4433888-4433907 Msa0665100:intron 30.0%
! CATGAGAGTACATATAAACA+TGG + chr4_4:4433948-4433967 None:intergenic 30.0%
!! TTAATAGACTTGGTGTTATG+TGG + chr4_4:4434135-4434154 None:intergenic 30.0%
AAGTCTATTAACTCTACCAA+GGG - chr4_4:4434144-4434163 Msa0665100:intron 30.0%
ATCACTGAAAAATTTATCCG+AGG + chr4_4:4434330-4434349 None:intergenic 30.0%
CAAAATATGTGTTTGGTCAT+AGG + chr4_4:4434478-4434497 None:intergenic 30.0%
CAAGCAACAAAATATGTGTT+TGG + chr4_4:4434485-4434504 None:intergenic 30.0%
ACAAAGATAGATGAGAACTA+AGG + chr4_4:4434515-4434534 None:intergenic 30.0%
ACCTTTACATTAAAAGGATC+TGG - chr4_4:4434682-4434701 Msa0665100:CDS 30.0%
CAGATCATATATACTTACTG+AGG - chr4_4:4434705-4434724 Msa0665100:CDS 30.0%
AGAAGCAAAGAAAATTGTAG+TGG + chr4_4:4434737-4434756 None:intergenic 30.0%
! TGATAGTGTATTGGAAACAA+AGG + chr4_4:4435022-4435041 None:intergenic 30.0%
! ATACGTTTGTGATAGTGTAT+TGG + chr4_4:4435031-4435050 None:intergenic 30.0%
ATCATCACTTGTTTATCATG+GGG + chr4_4:4435464-4435483 None:intergenic 30.0%
CATCATCACTTGTTTATCAT+GGG + chr4_4:4435465-4435484 None:intergenic 30.0%
ACATCATCACTTGTTTATCA+TGG + chr4_4:4435466-4435485 None:intergenic 30.0%
TCCTTATAATTGAGACAGTT+GGG + chr4_4:4435558-4435577 None:intergenic 30.0%
TTCCTTATAATTGAGACAGT+TGG + chr4_4:4435559-4435578 None:intergenic 30.0%
! ATGAATATGAGGGGTAATTT+TGG + chr4_4:4435661-4435680 None:intergenic 30.0%
! TTAATAAGGCGAAGTTGATT+AGG - chr4_4:4435719-4435738 Msa0665100:intron 30.0%
TAATGTGATGCGAAAATAAC+AGG + chr4_4:4435879-4435898 None:intergenic 30.0%
CTGATGACATTCAACAAAAA+TGG + chr4_4:4436032-4436051 None:intergenic 30.0%
! CATTTTTGTTGAATGTCATC+AGG - chr4_4:4436030-4436049 Msa0665100:CDS 30.0%
!!! TGCATTTTGTTGATTTTGTG+TGG - chr4_4:4436070-4436089 Msa0665100:CDS 30.0%
GGAAATTTATGTAGATGATG+AGG - chr4_4:4436239-4436258 Msa0665100:intron 30.0%
CAGAATGTATGCAAATTGAT+GGG + chr4_4:4436522-4436541 None:intergenic 30.0%
! TCAATGCTTTAAGCTGATTT+AGG - chr4_4:4436613-4436632 Msa0665100:intron 30.0%
CAGCATATAAAACATATACC+CGG + chr4_4:4436675-4436694 None:intergenic 30.0%
! TGCACGAATAGTCAATATTT+TGG + chr4_4:4436775-4436794 None:intergenic 30.0%
AAATCCTACAAAAAGGGATT+AGG + chr4_4:4436909-4436928 None:intergenic 30.0%
CCTACAAAATCCTACAAAAA+GGG + chr4_4:4436915-4436934 None:intergenic 30.0%
TCCTACAAAATCCTACAAAA+AGG + chr4_4:4436916-4436935 None:intergenic 30.0%
TAATTTACAGGAAAGGGATT+GGG + chr4_4:4437020-4437039 None:intergenic 30.0%
TTAATTTACAGGAAAGGGAT+TGG + chr4_4:4437021-4437040 None:intergenic 30.0%
TTACAAGATCTTGAAACTTC+TGG + chr4_4:4437206-4437225 None:intergenic 30.0%
TAGGCATAGTTATCAATTGT+GGG - chr4_4:4437274-4437293 Msa0665100:intron 30.0%
TCACCCCATTATAAAATTGT+TGG + chr4_4:4437320-4437339 None:intergenic 30.0%
TCAGTCTTAATAAACCAAGA+TGG - chr4_4:4437372-4437391 Msa0665100:intron 30.0%
ATTCATTGAGAAAAGTTACC+AGG - chr4_4:4437566-4437585 Msa0665100:intron 30.0%
!! CCGTTGATAACTATGATTAT+AGG - chr4_4:4437602-4437621 Msa0665100:intron 30.0%
!!! ATAGTTTTTGGGTTGTAGTA+TGG - chr4_4:4438062-4438081 Msa0665100:intron 30.0%
! AGTTCTTAATCAGGTTAGTT+AGG - chr4_4:4438234-4438253 Msa0665100:intron 30.0%
! TCTCTCATTTTCATTGAAAC+TGG - chr4_4:4438274-4438293 Msa0665100:intron 30.0%
! TCATTTTCATTGAAACTGGA+GGG - chr4_4:4438278-4438297 Msa0665100:intron 30.0%
!!! TTTATTTTCAGGTGCAATCT+AGG - chr4_4:4438351-4438370 Msa0665100:intron 30.0%
!! TAGGTTTGAGGTTGATATAA+AGG - chr4_4:4438370-4438389 Msa0665100:intron 30.0%
ACAAGTGTGATGCTTTATAA+AGG - chr4_4:4438644-4438663 Msa0665100:intron 30.0%
GTCACAAAACTTGATCAATT+AGG + chr4_4:4438717-4438736 None:intergenic 30.0%
!! TCAAGTTTTGTGACATGATT+TGG - chr4_4:4438723-4438742 Msa0665100:intron 30.0%
TGAAAAATAGGGAATTCGAA+TGG - chr4_4:4438854-4438873 Msa0665100:intron 30.0%
CTACATTGTATTTGTCTATC+TGG + chr4_4:4438950-4438969 None:intergenic 30.0%
CAGATAGACAAATACAATGT+AGG - chr4_4:4438948-4438967 Msa0665100:intron 30.0%
AACATTAACAACGTGAACAA+CGG + chr4_4:4439023-4439042 None:intergenic 30.0%
! CAAAGTACTATACTTTAGGA+GGG + chr4_4:4439066-4439085 None:intergenic 30.0%
! ACAAAGTACTATACTTTAGG+AGG + chr4_4:4439067-4439086 None:intergenic 30.0%
! CGAACAAAGTACTATACTTT+AGG + chr4_4:4439070-4439089 None:intergenic 30.0%
!! AGAAACCTTTCTAAAACCAA+TGG + chr4_4:4439154-4439173 None:intergenic 30.0%
! ATTCTCTTCCCTGTTGATAA+GGG + chr4_4:4432030-4432049 None:intergenic 35.0%
TATTCTCTTCCCTGTTGATA+AGG + chr4_4:4432031-4432050 None:intergenic 35.0%
TATCAACAGGGAAGAGAATA+TGG - chr4_4:4432031-4432050 Msa0665100:three_prime_UTR 35.0%
ATCAACAGGGAAGAGAATAT+GGG - chr4_4:4432032-4432051 Msa0665100:three_prime_UTR 35.0%
GAAAGATACTGAAGTTTACG+AGG - chr4_4:4432061-4432080 Msa0665100:three_prime_UTR 35.0%
!!! TTTTTGACGGATTCAGTAGT+GGG + chr4_4:4432140-4432159 None:intergenic 35.0%
TAATGTTTCGTGCTTGAAAG+TGG - chr4_4:4432286-4432305 Msa0665100:three_prime_UTR 35.0%
TTGTTGCAATCGATGTTAAC+TGG - chr4_4:4432467-4432486 Msa0665100:three_prime_UTR 35.0%
!! ATGTTAACTGGTTCTGTCTA+AGG - chr4_4:4432479-4432498 Msa0665100:three_prime_UTR 35.0%
!! TGTTAACTGGTTCTGTCTAA+GGG - chr4_4:4432480-4432499 Msa0665100:three_prime_UTR 35.0%
TTGAGTCATTGGATAAAGAC+CGG - chr4_4:4432622-4432641 Msa0665100:intron 35.0%
TATAGTTTGGTATACTGGGA+AGG + chr4_4:4433097-4433116 None:intergenic 35.0%
TCGCGTAAATAAACAGCTAA+AGG + chr4_4:4433190-4433209 None:intergenic 35.0%
!!! TTACTTTTGAGGTGCAAATC+AGG + chr4_4:4433235-4433254 None:intergenic 35.0%
!! TTCTTGATATGGACTAGGAA+AGG + chr4_4:4433434-4433453 None:intergenic 35.0%
TGCTAAAATGACTATAGACC+GGG + chr4_4:4433480-4433499 None:intergenic 35.0%
AGGAAGAGAAACTCAAAAAG+TGG + chr4_4:4433688-4433707 None:intergenic 35.0%
TAGTAAAACTTGCCTTCTGA+AGG + chr4_4:4433829-4433848 None:intergenic 35.0%
AGTAGACGACATCAATACAA+TGG + chr4_4:4433982-4434001 None:intergenic 35.0%
CTTGGTAGAGTTAATAGACT+TGG + chr4_4:4434145-4434164 None:intergenic 35.0%
CAAGTCTATTAACTCTACCA+AGG - chr4_4:4434143-4434162 Msa0665100:intron 35.0%
! GTACTCTAGAAGACAGAATA+GGG + chr4_4:4434271-4434290 None:intergenic 35.0%
!! CTAGAGTACCTTTTGATAAC+AGG - chr4_4:4434282-4434301 Msa0665100:intron 35.0%
AGACAATGCCTGTTATCAAA+AGG + chr4_4:4434293-4434312 None:intergenic 35.0%
TCTCTAATAGTCAAGTTCCT+CGG - chr4_4:4434310-4434329 Msa0665100:intron 35.0%
! GCTGTCTCTTTTGCTTATTT+GGG - chr4_4:4434358-4434377 Msa0665100:intron 35.0%
! CTGTCTCTTTTGCTTATTTG+GGG - chr4_4:4434359-4434378 Msa0665100:intron 35.0%
! TGTCTCTTTTGCTTATTTGG+GGG - chr4_4:4434360-4434379 Msa0665100:intron 35.0%
! GCCAGATCCTTTTAATGTAA+AGG + chr4_4:4434686-4434705 None:intergenic 35.0%
TCCATTCCTAAAATTGCTTG+GGG + chr4_4:4434784-4434803 None:intergenic 35.0%
GTCCATTCCTAAAATTGCTT+GGG + chr4_4:4434785-4434804 None:intergenic 35.0%
TCATTTGCCAAGCAAAATCT+GGG - chr4_4:4434806-4434825 Msa0665100:CDS 35.0%
!!! AAAGTTGCTGTTTTCTATGG+TGG - chr4_4:4435138-4435157 Msa0665100:intron 35.0%
! ATCTTTTCTCATGTCTGCAA+AGG + chr4_4:4435417-4435436 None:intergenic 35.0%
TGAATTTCTTGCAAACAGGT+CGG + chr4_4:4435514-4435533 None:intergenic 35.0%
TGCATGAATTTCTTGCAAAC+AGG + chr4_4:4435518-4435537 None:intergenic 35.0%
TCCCAACTGTCTCAATTATA+AGG - chr4_4:4435554-4435573 Msa0665100:intron 35.0%
AGACCAGAGTAGTATTTATG+TGG - chr4_4:4435796-4435815 Msa0665100:intron 35.0%
CTACCACATAAATACTACTC+TGG + chr4_4:4435802-4435821 None:intergenic 35.0%
!!! TGCATTTTGTTGGTTTTGTG+CGG - chr4_4:4435918-4435937 Msa0665100:CDS 35.0%
AAGACCATGAAGAGTCAATT+TGG + chr4_4:4436265-4436284 None:intergenic 35.0%
CCAGAATGTATGCAAATTGA+TGG + chr4_4:4436523-4436542 None:intergenic 35.0%
CCATCAATTTGCATACATTC+TGG - chr4_4:4436520-4436539 Msa0665100:intron 35.0%
!!! CGTTCTAAGATGTTTTGTTC+CGG - chr4_4:4436653-4436672 Msa0665100:intron 35.0%
!!! GTTCTAAGATGTTTTGTTCC+GGG - chr4_4:4436654-4436673 Msa0665100:intron 35.0%
! CGGGTATATGTTTTATATGC+TGG - chr4_4:4436673-4436692 Msa0665100:intron 35.0%
TATGCTGGATGTCTGTTAAA+TGG - chr4_4:4436688-4436707 Msa0665100:intron 35.0%
ATGCTGGATGTCTGTTAAAT+GGG - chr4_4:4436689-4436708 Msa0665100:intron 35.0%
! CCCTTTTTGTAGGATTTTGT+AGG - chr4_4:4436912-4436931 Msa0665100:intron 35.0%
GGTGGTTAATTTACAGGAAA+GGG + chr4_4:4437026-4437045 None:intergenic 35.0%
! CATGATCTTGTGCTTTAAGT+AGG - chr4_4:4437074-4437093 Msa0665100:intron 35.0%
! ATCTTGTGCTTTAAGTAGGT+TGG - chr4_4:4437078-4437097 Msa0665100:intron 35.0%
GACAAATTGCTGATGAGATT+AGG + chr4_4:4437105-4437124 None:intergenic 35.0%
ATACCTAAACATATCCAGTC+CGG + chr4_4:4437157-4437176 None:intergenic 35.0%
! AGATCTTGAAACTTCTGGAA+GGG + chr4_4:4437201-4437220 None:intergenic 35.0%
AAGATCTTGAAACTTCTGGA+AGG + chr4_4:4437202-4437221 None:intergenic 35.0%
AAACAACACACTCTTCAAAC+AGG + chr4_4:4437253-4437272 None:intergenic 35.0%
!! TTGAAGAGTGTGTTGTTTCT+AGG - chr4_4:4437255-4437274 Msa0665100:intron 35.0%
CTAGGCATAGTTATCAATTG+TGG - chr4_4:4437273-4437292 Msa0665100:intron 35.0%
! TAGTTATCAATTGTGGGTTG+TGG - chr4_4:4437280-4437299 Msa0665100:intron 35.0%
TGGCTGGTAACTATTCTAAA+TGG + chr4_4:4437485-4437504 None:intergenic 35.0%
AATCATAGTTATCAACGGCA+GGG + chr4_4:4437600-4437619 None:intergenic 35.0%
TAATCATAGTTATCAACGGC+AGG + chr4_4:4437601-4437620 None:intergenic 35.0%
TACTGAACTTTATTCGTACG+AGG + chr4_4:4437795-4437814 None:intergenic 35.0%
TTTCAGATTGAAGCGATACA+AGG - chr4_4:4437868-4437887 Msa0665100:intron 35.0%
TTCAGATTGAAGCGATACAA+GGG - chr4_4:4437869-4437888 Msa0665100:intron 35.0%
TATAAAGATAGAAGGGACAG+AGG + chr4_4:4438118-4438137 None:intergenic 35.0%
TTATCGACATCTGAACTGTT+AGG - chr4_4:4438141-4438160 Msa0665100:intron 35.0%
!! ATTACTTTTGTGTCTTCTGC+TGG - chr4_4:4438202-4438221 Msa0665100:intron 35.0%
!! TGACTCTGAAGTTCTTAATC+AGG - chr4_4:4438225-4438244 Msa0665100:intron 35.0%
! CTCATTTTCATTGAAACTGG+AGG - chr4_4:4438277-4438296 Msa0665100:intron 35.0%
! CATTTTCATTGAAACTGGAG+GGG - chr4_4:4438279-4438298 Msa0665100:intron 35.0%
! AAAGCATCAATGGCCAAAAA+GGG + chr4_4:4438312-4438331 None:intergenic 35.0%
!! AAAAGCATCAATGGCCAAAA+AGG + chr4_4:4438313-4438332 None:intergenic 35.0%
AAGTATCTTACTGTATGTGG+AGG + chr4_4:4438417-4438436 None:intergenic 35.0%
AGACAAATACAATGTAGGGT+CGG - chr4_4:4438953-4438972 Msa0665100:intron 35.0%
TATAGTACTTTGTTCGTGCT+GGG - chr4_4:4439074-4439093 Msa0665100:CDS 35.0%
AAACCCTAACCCTTATCAAC+AGG - chr4_4:4432018-4432037 Msa0665100:three_prime_UTR 40.0%
AACCCTAACCCTTATCAACA+GGG - chr4_4:4432019-4432038 Msa0665100:three_prime_UTR 40.0%
! TTCCCTGTTGATAAGGGTTA+GGG + chr4_4:4432024-4432043 None:intergenic 40.0%
!!! CTTTTTGACGGATTCAGTAG+TGG + chr4_4:4432141-4432160 None:intergenic 40.0%
! AGAGTAGATGTTGATTGACC+TGG - chr4_4:4432503-4432522 Msa0665100:intron 40.0%
! GATGTTGATTGACCTGGATT+TGG - chr4_4:4432509-4432528 Msa0665100:intron 40.0%
!!! TTTTTGAGTGCACCAAATCC+AGG + chr4_4:4432524-4432543 None:intergenic 40.0%
AATGGGATAAGGCTTGATTG+TGG - chr4_4:4432590-4432609 Msa0665100:intron 40.0%
GGTTGTTGTAGTTGAGTCAT+TGG - chr4_4:4432611-4432630 Msa0665100:intron 40.0%
AAAGTCTGACGTAAGTTGTC+CGG + chr4_4:4432644-4432663 None:intergenic 40.0%
GTTGTCGGGTCTTTATCTAT+TGG - chr4_4:4432697-4432716 Msa0665100:intron 40.0%
TATCTATTGGCCGCTATTTG+CGG - chr4_4:4432710-4432729 Msa0665100:intron 40.0%
! AGGCACAGTGTGATAATGAA+TGG - chr4_4:4432907-4432926 Msa0665100:intron 40.0%
AGAGTGAAATTGTGGTAGAG+TGG - chr4_4:4432976-4432995 Msa0665100:intron 40.0%
ACCTTATGTAGTACAGCCAA+AGG + chr4_4:4433002-4433021 None:intergenic 40.0%
ACTACATAAGGTCGCTCTTA+TGG - chr4_4:4433010-4433029 Msa0665100:CDS 40.0%
CTTATGGACACAGACAATCA+TGG - chr4_4:4433026-4433045 Msa0665100:CDS 40.0%
TAGCCAGTGTGAGATTGTAA+TGG + chr4_4:4433052-4433071 None:intergenic 40.0%
! GGCTTGGTTGTTGTATAGTT+TGG + chr4_4:4433110-4433129 None:intergenic 40.0%
! AGTAATAGTGGGATAAGGCT+TGG + chr4_4:4433126-4433145 None:intergenic 40.0%
AAAATTGGAGAGCAGTGAGA+CGG + chr4_4:4433305-4433324 None:intergenic 40.0%
! TTTACTTGGTCTTTGTTCCC+CGG - chr4_4:4433459-4433478 Msa0665100:intron 40.0%
GCTAAAATGACTATAGACCG+GGG + chr4_4:4433479-4433498 None:intergenic 40.0%
CTCAAACCCTGAATCTACAA+TGG + chr4_4:4433803-4433822 None:intergenic 40.0%
ATGGGCATGCTAGAAAGAAA+AGG + chr4_4:4433929-4433948 None:intergenic 40.0%
AGAACAACTGACACATGAAC+AGG - chr4_4:4434098-4434117 Msa0665100:intron 40.0%
GTAAGAGTTAAGAAAGCCCT+TGG + chr4_4:4434163-4434182 None:intergenic 40.0%
! GGTACTCTAGAAGACAGAAT+AGG + chr4_4:4434272-4434291 None:intergenic 40.0%
! GGCTGTCTCTTTTGCTTATT+TGG - chr4_4:4434357-4434376 Msa0665100:intron 40.0%
CCATTCCTAAAATTGCTTGG+GGG + chr4_4:4434783-4434802 None:intergenic 40.0%
CGTCCATTCCTAAAATTGCT+TGG + chr4_4:4434786-4434805 None:intergenic 40.0%
GTCATTTGCCAAGCAAAATC+TGG - chr4_4:4434805-4434824 Msa0665100:CDS 40.0%
! GATAAGCTAGTTCTCTTGTG+TGG + chr4_4:4434915-4434934 None:intergenic 40.0%
! CACAAGAGAACTAGCTTATC+AGG - chr4_4:4434915-4434934 Msa0665100:intron 40.0%
GTGTTCCAACAACAATGTGT+GGG + chr4_4:4435206-4435225 None:intergenic 40.0%
! ACATTGTTGTTGGAACACCT+GGG - chr4_4:4435208-4435227 Msa0665100:intron 40.0%
AAGGTCCTTATCTCTAGTCA+GGG + chr4_4:4435244-4435263 None:intergenic 40.0%
! ACCTTGGTTTGAAGAATGTG+AGG - chr4_4:4435259-4435278 Msa0665100:intron 40.0%
AACACGCAATTAAGGAGACA+AGG + chr4_4:4435342-4435361 None:intergenic 40.0%
CTCGACAAAACACGCAATTA+AGG + chr4_4:4435350-4435369 None:intergenic 40.0%
TCATGTCTGCAAAGGTCAAA+TGG + chr4_4:4435409-4435428 None:intergenic 40.0%
CAAAACAGCTCTTGCATCTA+CGG + chr4_4:4435833-4435852 None:intergenic 40.0%
GATGCGAAAATAACAGGAGT+TGG + chr4_4:4435873-4435892 None:intergenic 40.0%
CTACATAAATTTCCATGGGC+TGG + chr4_4:4436233-4436252 None:intergenic 40.0%
TTCAGCTTACGATTCTTCTC+TGG + chr4_4:4436400-4436419 None:intergenic 40.0%
CTGGAATGTCACAAGAAGAA+AGG - chr4_4:4436539-4436558 Msa0665100:intron 40.0%
AGTACATAAGACTACGCATG+TGG + chr4_4:4436592-4436611 None:intergenic 40.0%
GATGTCTGTTAAATGGGACA+TGG - chr4_4:4436695-4436714 Msa0665100:intron 40.0%
TCTGTTAAATGGGACATGGT+TGG - chr4_4:4436699-4436718 Msa0665100:intron 40.0%
!! TATTGGTGTCATGCACATCA+CGG - chr4_4:4436878-4436897 Msa0665100:intron 40.0%
! TGGTCCTAATCCCTTTTTGT+AGG - chr4_4:4436902-4436921 Msa0665100:intron 40.0%
GGACTTATGTCTGTCTGATT+AGG - chr4_4:4436949-4436968 Msa0665100:intron 40.0%
GGGTGGTTAATTTACAGGAA+AGG + chr4_4:4437027-4437046 None:intergenic 40.0%
CACACTCTTCAAACAGGAAA+TGG + chr4_4:4437247-4437266 None:intergenic 40.0%
TGAGCCAGTTATCAGACATA+TGG - chr4_4:4437400-4437419 Msa0665100:CDS 40.0%
! TTGCTTGTCAGATCTGAAGT+GGG + chr4_4:4437437-4437456 None:intergenic 40.0%
TTTGCTTGTCAGATCTGAAG+TGG + chr4_4:4437438-4437457 None:intergenic 40.0%
ATTTATCAATGGCAGGGTAG+TGG + chr4_4:4437508-4437527 None:intergenic 40.0%
ATCATAGTTATCAACGGCAG+GGG + chr4_4:4437599-4437618 None:intergenic 40.0%
AGATAGGTATCAGCAGAATC+AGG + chr4_4:4437992-4438011 None:intergenic 40.0%
TGCTGATACCTATCTTCACA+GGG - chr4_4:4437997-4438016 Msa0665100:intron 40.0%
AGCAATTACCCTGTGAAGAT+AGG + chr4_4:4438008-4438027 None:intergenic 40.0%
AAAAGTAATTGCAAGCCCCT+TGG + chr4_4:4438191-4438210 None:intergenic 40.0%
! ATGCAGGAGCATACAAAACA+TGG + chr4_4:4438916-4438935 None:intergenic 40.0%
TCTGGATAAAAAACGGATGC+AGG + chr4_4:4438932-4438951 None:intergenic 40.0%
GTATAGTACTTTGTTCGTGC+TGG - chr4_4:4439073-4439092 Msa0665100:CDS 40.0%
! CTTCCCTGTTGATAAGGGTT+AGG + chr4_4:4432025-4432044 None:intergenic 45.0%
TGTTGCAGATTTGGGTCCTT+TGG - chr4_4:4432769-4432788 Msa0665100:intron 45.0%
AATTGTGGTAGAGTGGCCTT+TGG - chr4_4:4432983-4433002 Msa0665100:intron 45.0%
GCCTTTGGCTGTACTACATA+AGG - chr4_4:4432998-4433017 Msa0665100:CDS 45.0%
TGGCCATTACAATCTCACAC+TGG - chr4_4:4433046-4433065 Msa0665100:CDS 45.0%
TTTGGTATACTGGGAAGGTG+GGG + chr4_4:4433092-4433111 None:intergenic 45.0%
GTTTGGTATACTGGGAAGGT+GGG + chr4_4:4433093-4433112 None:intergenic 45.0%
AGTTTGGTATACTGGGAAGG+TGG + chr4_4:4433094-4433113 None:intergenic 45.0%
TGTCTGAATGGCTTGAAAGC+AGG - chr4_4:4433154-4433173 Msa0665100:intron 45.0%
AATGGCTTGAAAGCAGGAAG+TGG - chr4_4:4433160-4433179 Msa0665100:intron 45.0%
AGGTTGAGCTTTCTGTGAGT+GGG + chr4_4:4433371-4433390 None:intergenic 45.0%
! TAGGTTGAGCTTTCTGTGAG+TGG + chr4_4:4433372-4433391 None:intergenic 45.0%
CTACGTTGGGATCCATAGTT+CGG - chr4_4:4433738-4433757 Msa0665100:intron 45.0%
TACGTTGGGATCCATAGTTC+GGG - chr4_4:4433739-4433758 Msa0665100:intron 45.0%
AGTCTCGAAATCCCGAACTA+TGG + chr4_4:4433753-4433772 None:intergenic 45.0%
TCCGAGCCATTGTAGATTCA+GGG - chr4_4:4433794-4433813 Msa0665100:intron 45.0%
ACCCTGAATCTACAATGGCT+CGG + chr4_4:4433798-4433817 None:intergenic 45.0%
GAAGACAGAATAGGGAGCTA+AGG + chr4_4:4434263-4434282 None:intergenic 45.0%
! CTCTTTTGCTTATTTGGGGG+TGG - chr4_4:4434363-4434382 Msa0665100:intron 45.0%
! TGCATCCCCCAAGCAATTTT+AGG - chr4_4:4434775-4434794 Msa0665100:CDS 45.0%
!! CCCCCAAGCAATTTTAGGAA+TGG - chr4_4:4434780-4434799 Msa0665100:CDS 45.0%
TTGCCAAGCAAAATCTGGGA+TGG - chr4_4:4434810-4434829 Msa0665100:CDS 45.0%
! TGCCAAGCAAAATCTGGGAT+GGG - chr4_4:4434811-4434830 Msa0665100:CDS 45.0%
! TTCCCATCCCAGATTTTGCT+TGG + chr4_4:4434816-4434835 None:intergenic 45.0%
CAGCAAATTGATCCTGTTCC+TGG - chr4_4:4434865-4434884 Msa0665100:intron 45.0%
AATTGATCCTGTTCCTGGTC+AGG - chr4_4:4434870-4434889 Msa0665100:intron 45.0%
TCTCAACTTCGTGGCAAATC+TGG + chr4_4:4435092-4435111 None:intergenic 45.0%
AGATTTGCCACGAAGTTGAG+AGG - chr4_4:4435091-4435110 Msa0665100:intron 45.0%
! CTATGGTGGTGTCAACATCA+AGG - chr4_4:4435152-4435171 Msa0665100:intron 45.0%
GGTGTTCCAACAACAATGTG+TGG + chr4_4:4435207-4435226 None:intergenic 45.0%
! CACATTGTTGTTGGAACACC+TGG - chr4_4:4435207-4435226 Msa0665100:intron 45.0%
TCTTGCCCTGACTAGAGATA+AGG - chr4_4:4435236-4435255 Msa0665100:intron 45.0%
CAAGGTCCTTATCTCTAGTC+AGG + chr4_4:4435245-4435264 None:intergenic 45.0%
CTGACTAGAGATAAGGACCT+TGG - chr4_4:4435243-4435262 Msa0665100:intron 45.0%
GCCTCACATTCTTCAAACCA+AGG + chr4_4:4435263-4435282 None:intergenic 45.0%
TGATGAGTGTGACAAGATGC+TGG - chr4_4:4435293-4435312 Msa0665100:intron 45.0%
GACAAGATGCTGGAATCACT+TGG - chr4_4:4435303-4435322 Msa0665100:intron 45.0%
ACGCAATTAAGGAGACAAGG+AGG + chr4_4:4435339-4435358 None:intergenic 45.0%
! GTTTTCAGCTACACTCAGCA+AGG - chr4_4:4435484-4435503 Msa0665100:intron 45.0%
CAGGAGTTGGAACAATAAGC+AGG + chr4_4:4435860-4435879 None:intergenic 45.0%
! AATCTTTTTCCTCCAGCCCA+TGG - chr4_4:4436218-4436237 Msa0665100:intron 45.0%
!! CATAAATTTCCATGGGCTGG+AGG + chr4_4:4436230-4436249 None:intergenic 45.0%
! GAGGCCAAATTGACTCTTCA+TGG - chr4_4:4436258-4436277 Msa0665100:intron 45.0%
!! GACTCTTCATGGTCTTGTTC+AGG - chr4_4:4436269-4436288 Msa0665100:intron 45.0%
! TCTTGTTCAGGTGCGTTTTG+TGG - chr4_4:4436281-4436300 Msa0665100:intron 45.0%
! CTTGTTCAGGTGCGTTTTGT+GGG - chr4_4:4436282-4436301 Msa0665100:intron 45.0%
CAGGAGGGTGGTTAATTTAC+AGG + chr4_4:4437032-4437051 None:intergenic 45.0%
CTATGCAAACATGCACAGGA+GGG + chr4_4:4437047-4437066 None:intergenic 45.0%
ACTATGCAAACATGCACAGG+AGG + chr4_4:4437048-4437067 None:intergenic 45.0%
TCCTGTGCATGTTTGCATAG+TGG - chr4_4:4437047-4437066 Msa0665100:intron 45.0%
! GCAAGTCTGTTGACTACTTC+CGG - chr4_4:4437135-4437154 Msa0665100:intron 45.0%
! CTTCCGGACTGGATATGTTT+AGG - chr4_4:4437151-4437170 Msa0665100:intron 45.0%
CAGGCCATATGTCTGATAAC+TGG + chr4_4:4437407-4437426 None:intergenic 45.0%
! TGCTTGTCAGATCTGAAGTG+GGG + chr4_4:4437436-4437455 None:intergenic 45.0%
TGGAGTCTAACTAGTTGCTC+TGG + chr4_4:4437465-4437484 None:intergenic 45.0%
CTGAAACAGACATGTCGTCA+TGG + chr4_4:4437854-4437873 None:intergenic 45.0%
CGATACAAGGGCTTCAAAGA+GGG - chr4_4:4437881-4437900 Msa0665100:intron 45.0%
GATACAAGGGCTTCAAAGAG+GGG - chr4_4:4437882-4437901 Msa0665100:intron 45.0%
! TCGTGGCAACCGATTTAGTA+GGG - chr4_4:4437918-4437937 Msa0665100:intron 45.0%
AATCCCCCTCCCTACTAAAT+CGG + chr4_4:4437930-4437949 None:intergenic 45.0%
CTGCTGATACCTATCTTCAC+AGG - chr4_4:4437996-4438015 Msa0665100:intron 45.0%
! GACAGAGGTCTTTTACAAGG+AGG + chr4_4:4438103-4438122 None:intergenic 45.0%
! AGGGACAGAGGTCTTTTACA+AGG + chr4_4:4438106-4438125 None:intergenic 45.0%
TCGACATCTGAACTGTTAGG+TGG - chr4_4:4438144-4438163 Msa0665100:intron 45.0%
CGACATCTGAACTGTTAGGT+GGG - chr4_4:4438145-4438164 Msa0665100:intron 45.0%
CATTGAAACTGGAGGGGAAT+AGG - chr4_4:4438285-4438304 Msa0665100:intron 45.0%
TCAGGTGCAATCTAGGTTTG+AGG - chr4_4:4438358-4438377 Msa0665100:intron 45.0%
!! GTGGAGGTGTCAATTTGTTC+AGG + chr4_4:4438401-4438420 None:intergenic 45.0%
ACAAATGATCTGTTGCCGAC+TGG - chr4_4:4438754-4438773 Msa0665100:intron 45.0%
! CAAATGATCTGTTGCCGACT+GGG - chr4_4:4438755-4438774 Msa0665100:intron 45.0%
! AAATGATCTGTTGCCGACTG+GGG - chr4_4:4438756-4438775 Msa0665100:intron 45.0%
ACAACAAATCCATCCCCAGT+CGG + chr4_4:4438772-4438791 None:intergenic 45.0%
! TCGAATGGCTCCTGAGTTTT+TGG - chr4_4:4438869-4438888 Msa0665100:intron 45.0%
! CGAATGGCTCCTGAGTTTTT+GGG - chr4_4:4438870-4438889 Msa0665100:intron 45.0%
CAGTCTTCTCCCAAAAACTC+AGG + chr4_4:4438882-4438901 None:intergenic 45.0%
TCACTGCAGTCCGCAAATAG+CGG + chr4_4:4432723-4432742 None:intergenic 50.0%
AGACACACACACTCACTCAC+AGG + chr4_4:4433534-4433553 None:intergenic 50.0%
! GGAGAAGCTCTGGTTTCAAC+AGG + chr4_4:4433777-4433796 None:intergenic 50.0%
CTCCGAGCCATTGTAGATTC+AGG - chr4_4:4433793-4433812 Msa0665100:intron 50.0%
GGGTTTGAGCATCCTTCAGA+AGG - chr4_4:4433814-4433833 Msa0665100:intron 50.0%
TGCTGAACCTCTCAACTTCG+TGG + chr4_4:4435101-4435120 None:intergenic 50.0%
GAGTGCCCACACATTGTTGT+TGG - chr4_4:4435198-4435217 Msa0665100:intron 50.0%
! TTGTTGTTGGAACACCTGGG+AGG - chr4_4:4435211-4435230 Msa0665100:intron 50.0%
GCCACTATGCAAACATGCAC+AGG + chr4_4:4437051-4437070 None:intergenic 50.0%
! TCTGTTGACTACTTCCGGAC+TGG - chr4_4:4437140-4437159 Msa0665100:intron 50.0%
! ACTGGCTCAACTAGCCATCT+TGG + chr4_4:4437389-4437408 None:intergenic 50.0%
! TATCAATGGCAGGGTAGTGG+TGG + chr4_4:4437505-4437524 None:intergenic 50.0%
GCGATACAAGGGCTTCAAAG+AGG - chr4_4:4437880-4437899 Msa0665100:intron 50.0%
! CTCGTGGCAACCGATTTAGT+AGG - chr4_4:4437917-4437936 Msa0665100:intron 50.0%
! TGGCAACCGATTTAGTAGGG+AGG - chr4_4:4437921-4437940 Msa0665100:intron 50.0%
! GGCAACCGATTTAGTAGGGA+GGG - chr4_4:4437922-4437941 Msa0665100:intron 50.0%
! GCAACCGATTTAGTAGGGAG+GGG - chr4_4:4437923-4437942 Msa0665100:intron 50.0%
! CAACCGATTTAGTAGGGAGG+GGG - chr4_4:4437924-4437943 Msa0665100:intron 50.0%
AACTGTTAGGTGGGTAGAGC+TGG - chr4_4:4438154-4438173 Msa0665100:intron 50.0%
GTGGGTAGAGCTGGTAGATT+TGG - chr4_4:4438163-4438182 Msa0665100:intron 50.0%
AGCTGGTAGATTTGGCACCA+AGG - chr4_4:4438171-4438190 Msa0665100:intron 50.0%
GCTGGTAGATTTGGCACCAA+GGG - chr4_4:4438172-4438191 Msa0665100:intron 50.0%
CTGGTAGATTTGGCACCAAG+GGG - chr4_4:4438173-4438192 Msa0665100:intron 50.0%
! GAGGGGAATAGGACCCTTTT+TGG - chr4_4:4438296-4438315 Msa0665100:intron 50.0%
GGCTCGAGTGCATATTCCAT+TGG - chr4_4:4439135-4439154 Msa0665100:CDS 50.0%
TTGTTGTGCAGGGGCTACGT+TGG - chr4_4:4433724-4433743 Msa0665100:intron 55.0%
TGTTGTGCAGGGGCTACGTT+GGG - chr4_4:4433725-4433744 Msa0665100:intron 55.0%
! ACAATGGCTCGGAGAAGCTC+TGG + chr4_4:4433787-4433806 None:intergenic 55.0%
! ACAAGTGCTGCAACCTGACC+AGG + chr4_4:4434886-4434905 None:intergenic 55.0%
! GGTGTCATGCACATCACGGT+TGG - chr4_4:4436882-4436901 Msa0665100:intron 55.0%
TGCAAACATGCACAGGAGGG+TGG + chr4_4:4437044-4437063 None:intergenic 55.0%
! GTGGGTTGTGGCACAGTAAC+TGG - chr4_4:4437292-4437311 Msa0665100:intron 55.0%
! ATCTGAAGTGGGGCTTGGAC+AGG + chr4_4:4437426-4437445 None:intergenic 55.0%
! GTCAGATCTGAAGTGGGGCT+TGG + chr4_4:4437431-4437450 None:intergenic 55.0%
AGTTATCAACGGCAGGGGAG+TGG + chr4_4:4437594-4437613 None:intergenic 55.0%
GGGGAAGCAGAGAATTCTCG+TGG - chr4_4:4437901-4437920 Msa0665100:intron 55.0%
GTATACTGGGAAGGTGGGGC+AGG + chr4_4:4433088-4433107 None:intergenic 60.0%
GCTGCAACCTGACCAGGAAC+AGG + chr4_4:4434880-4434899 None:intergenic 60.0%
GTCAGGGCAAGAATCCTCCC+AGG + chr4_4:4435228-4435247 None:intergenic 60.0%
! AATGGCAGGGTAGTGGTGGC+TGG + chr4_4:4437501-4437520 None:intergenic 60.0%
! GATCTGTTGCCGACTGGGGA+TGG - chr4_4:4438760-4438779 Msa0665100:intron 60.0%
AACGGCAGGGGAGTGGTGCC+TGG + chr4_4:4437587-4437606 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 4432014 4439218 4432014 ID=Msa0665100;Name=Msa0665100
chr4_4 mRNA 4432014 4439218 4432014 ID=Msa0665100-mRNA-1;Parent=Msa0665100;Name=Msa0665100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.63|1|0.9|0.81|11|496|436
chr4_4 exon 4432014 4432520 4432014 ID=Msa0665100-mRNA-1:exon:1518;Parent=Msa0665100-mRNA-1
chr4_4 exon 4432807 4432870 4432807 ID=Msa0665100-mRNA-1:exon:1517;Parent=Msa0665100-mRNA-1
chr4_4 exon 4432986 4433069 4432986 ID=Msa0665100-mRNA-1:exon:1516;Parent=Msa0665100-mRNA-1
chr4_4 exon 4433214 4433358 4433214 ID=Msa0665100-mRNA-1:exon:1515;Parent=Msa0665100-mRNA-1
chr4_4 exon 4434672 4434856 4434672 ID=Msa0665100-mRNA-1:exon:1514;Parent=Msa0665100-mRNA-1
chr4_4 exon 4434942 4434998 4434942 ID=Msa0665100-mRNA-1:exon:1513;Parent=Msa0665100-mRNA-1
chr4_4 exon 4435757 4435809 4435757 ID=Msa0665100-mRNA-1:exon:1512;Parent=Msa0665100-mRNA-1
chr4_4 exon 4435908 4436139 4435908 ID=Msa0665100-mRNA-1:exon:1511;Parent=Msa0665100-mRNA-1
chr4_4 exon 4436296 4436524 4436296 ID=Msa0665100-mRNA-1:exon:1510;Parent=Msa0665100-mRNA-1
chr4_4 exon 4437393 4437497 4437393 ID=Msa0665100-mRNA-1:exon:1509;Parent=Msa0665100-mRNA-1
chr4_4 exon 4439073 4439218 4439073 ID=Msa0665100-mRNA-1:exon:1508;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4439073 4439218 4439073 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4437393 4437497 4437393 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4436296 4436524 4436296 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4435908 4436139 4435908 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4435757 4435809 4435757 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4434942 4434998 4434942 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4434672 4434856 4434672 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4433214 4433358 4433214 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4432986 4433069 4432986 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4432807 4432870 4432807 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 CDS 4432510 4432520 4432510 ID=Msa0665100-mRNA-1:cds;Parent=Msa0665100-mRNA-1
chr4_4 three_prime_UTR 4432014 4432509 4432014 ID=Msa0665100-mRNA-1:three_prime_utr;Parent=Msa0665100-mRNA-1
Gene Sequence

>Msa0665100

CTGAAAACCCTAACCCTTATCAACAGGGAAGAGAATATGGGTGAATTGAAAGATACTGAAGTTTACGAGGAAGAGCTTATCGATTACGAAGAAGAAGATGAAAAAGCTCTTGATTCTACTAAACCCACTACTGAATCCGTCAAAAAGGGCTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTCCGAGCCATTGTAGATTCAGGGTTTGAGCATCCTTCAGAAGGCAAATCATATATACTTACTGAGGATTCGTCCACTACAATTTTCTTTGCTTCTTCATTAGTGCAACACGAATGCATCCCCCAAGCAATTTTAGGAATGGACGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTGCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGCCACGAAGTTGAGAGGTTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAATGAGTGCCCACACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGAGAAAAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAACCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAATTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAATAAGTTGCTTGTTGAGTGTAACTTCCCATCAATTTGCATACATTCTGGAATGTCACAAGAAGAAAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAGAGAATTCTCGTGGCAACCGATTTAGTAGGGAGGGGGATTGATATAGAGCGTGTCAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACCTATCTTCACAGGGTGGGTAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCTGGTGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACATGCCTAATTGA
Protein sequence

>Msa0665100

LKTLTLINREENMGELKDTEVYEEELIDYEEEDEKALDSTKPTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKSYILTEDSSTTIFFASSLVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN*