AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0627380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627380 MtrunA17_Chr4g0003441 86.854 426 11 2 1 381 63 488 0.0 729
Msa0627380 MtrunA17_Chr1g0149251 86.293 321 22 1 83 381 24 344 0.0 566
Msa0627380 MtrunA17_Chr3g0137901 90.556 180 17 0 202 381 1 180 3.90e-118 340
Msa0627380 MtrunA17_Chr3g0137891 90.833 120 11 0 83 202 24 143 8.13e-77 237
Msa0627380 MtrunA17_Chr7g0247191 32.794 433 228 12 1 378 97 521 6.28e-55 189
Msa0627380 MtrunA17_Chr7g0247181 32.564 433 229 12 1 378 87 511 5.95e-54 186
Msa0627380 MtrunA17_Chr7g0247221 32.518 409 219 9 16 378 117 514 1.42e-53 185
Msa0627380 MtrunA17_Chr2g0299681 32.880 368 196 8 52 373 47 409 2.32e-50 174
Msa0627380 MtrunA17_Chr4g0070981 31.579 399 221 9 21 373 17 409 2.19e-49 171
Msa0627380 MtrunA17_Chr2g0329931 32.967 364 193 8 56 373 51 409 4.07e-49 171
Msa0627380 MtrunA17_Chr8g0342861 32.337 368 198 8 52 373 47 409 1.25e-48 169
Msa0627380 MtrunA17_Chr2g0297261 30.334 389 214 12 31 373 25 402 6.11e-46 162
Msa0627380 MtrunA17_Chr2g0330401 33.524 349 191 15 33 349 108 447 3.16e-39 146
Msa0627380 MtrunA17_Chr3g0107851 32.509 283 159 6 93 345 192 472 1.09e-38 145
Msa0627380 MtrunA17_Chr4g0063551 34.859 284 155 6 93 348 226 507 3.70e-38 145
Msa0627380 MtrunA17_Chr6g0483491 31.065 338 190 10 64 371 51 375 1.08e-37 140
Msa0627380 MtrunA17_Chr7g0236841 31.065 338 190 10 64 371 51 375 1.10e-37 140
Msa0627380 MtrunA17_Chr4g0076491 33.562 292 155 4 93 347 365 654 1.30e-37 144
Msa0627380 MtrunA17_Chr3g0121351 33.333 312 174 7 93 373 226 534 1.36e-37 143
Msa0627380 MtrunA17_Chr1g0176041 34.859 284 152 6 93 345 234 515 5.72e-37 141
Msa0627380 MtrunA17_Chr1g0193491 30.225 311 178 9 94 372 194 497 6.68e-36 138
Msa0627380 MtrunA17_Chr6g0449741 33.219 292 154 5 93 347 327 614 1.30e-35 137
Msa0627380 MtrunA17_Chr7g0271121 32.364 275 156 5 93 343 184 452 9.44e-35 135
Msa0627380 MtrunA17_Chr7g0263771 32.042 284 157 6 89 345 200 474 9.06e-34 132
Msa0627380 MtrunA17_Chr1g0200181 30.769 299 178 9 76 347 204 500 1.73e-33 131
Msa0627380 MtrunA17_Chr2g0310581 28.909 339 206 12 54 363 84 416 2.76e-32 127
Msa0627380 MtrunA17_Chr2g0293631 27.177 379 209 12 30 351 485 853 5.28e-31 125
Msa0627380 MtrunA17_Chr5g0442191 31.098 328 179 12 80 377 149 459 5.77e-31 124
Msa0627380 MtrunA17_Chr6g0449911 27.419 372 198 13 31 345 155 511 7.90e-31 124
Msa0627380 MtrunA17_Chr1g0179761 26.277 411 208 12 44 372 78 475 1.08e-30 122
Msa0627380 MtrunA17_Chr3g0095031 29.739 306 178 9 93 371 166 461 2.99e-30 121
Msa0627380 MtrunA17_Chr1g0157691 29.450 309 182 10 87 369 218 516 5.07e-30 121
Msa0627380 MtrunA17_Chr2g0300291 29.431 299 177 8 91 361 212 504 7.24e-30 121
Msa0627380 MtrunA17_Chr3g0098121 29.431 299 176 9 91 361 223 514 4.00e-29 119
Msa0627380 MtrunA17_Chr3g0114081 27.129 317 189 5 79 354 77 392 1.62e-28 117
Msa0627380 MtrunA17_Chr7g0270131 27.966 354 198 13 47 347 233 582 4.48e-27 113
Msa0627380 MtrunA17_Chr2g0277821 29.433 282 167 8 93 347 579 855 5.06e-27 113
Msa0627380 MtrunA17_Chr5g0409981 31.071 280 166 6 93 347 180 457 5.45e-27 112
Msa0627380 MtrunA17_Chr6g0461751 29.126 309 192 8 93 378 217 521 2.17e-25 107
Msa0627380 MtrunA17_Chr4g0025141 33.155 187 111 4 199 372 38 223 2.65e-24 100
Msa0627380 MtrunA17_Chr8g0347171 27.946 297 174 8 88 347 229 522 2.97e-24 104
Msa0627380 MtrunA17_Chr8g0347161 25.654 382 212 12 35 347 86 464 3.70e-24 103
Msa0627380 MtrunA17_Chr8g0347151 27.660 329 194 11 94 381 280 605 5.18e-24 103
Msa0627380 MtrunA17_Chr2g0307471 26.543 324 204 9 54 346 122 442 4.70e-23 100
Msa0627380 MtrunA17_Chr4g0062301 27.221 349 186 14 58 346 109 449 7.57e-23 100
Msa0627380 MtrunA17_Chr4g0040761 27.815 302 184 11 75 348 72 367 1.24e-22 100
Msa0627380 MtrunA17_Chr8g0386451 27.619 315 179 8 91 370 364 664 1.60e-22 99.8
Msa0627380 MtrunA17_Chr8g0342851 27.336 289 182 5 93 371 43 313 2.24e-22 96.7
Msa0627380 MtrunA17_Chr6g0466611 27.301 326 186 14 67 347 186 505 5.78e-22 97.8
Msa0627380 MtrunA17_Chr6g0475251 27.143 280 168 8 92 343 182 453 2.22e-21 95.9
Msa0627380 MtrunA17_Chr3g0137881 78.667 75 13 2 1 73 1 74 2.46e-21 87.4
Msa0627380 MtrunA17_Chr1g0169331 27.586 261 155 9 144 374 139 395 5.60e-21 93.6
Msa0627380 MtrunA17_Chr1g0204391 27.018 285 170 8 88 343 135 410 5.70e-21 94.7
Msa0627380 MtrunA17_Chr2g0309551 24.412 340 190 6 91 366 193 529 2.73e-20 92.4
Msa0627380 MtrunA17_Chr1g0149261 84.615 52 6 1 23 72 22 73 3.15e-20 84.3
Msa0627380 MtrunA17_Chr5g0443991 26.804 291 167 11 91 346 148 427 7.14e-20 91.7
Msa0627380 MtrunA17_Chr5g0429221 24.062 320 209 9 64 355 45 358 1.14e-17 84.0
Msa0627380 MtrunA17_Chr7g0236831 29.012 162 112 1 219 380 452 610 5.92e-17 82.8
Msa0627380 MtrunA17_Chr4g0058591 26.891 238 144 7 94 306 278 510 9.50e-16 78.6
Msa0627380 MtrunA17_Chr4g0025101 32.727 110 60 1 277 372 90 199 2.29e-15 74.7
Msa0627380 MtrunA17_Chr4g0029191 30.657 137 89 3 214 346 331 465 8.34e-15 75.9
Msa0627380 MtrunA17_Chr2g0301281 29.197 137 91 3 214 346 328 462 3.67e-14 73.9
Msa0627380 MtrunA17_Chr4g0004301 36.752 117 67 3 236 347 327 441 5.01e-12 67.0
Msa0627380 MtrunA17_Chr4g0062321 27.411 197 109 6 144 311 42 233 2.15e-11 63.5
Msa0627380 MtrunA17_Chr5g0434301 35.897 117 68 3 236 347 327 441 2.58e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627380 AT5G11170.1 77.986 427 48 3 1 381 1 427 0.0 627
Msa0627380 AT5G11200.1 77.986 427 48 3 1 381 1 427 0.0 627
Msa0627380 AT5G11170.2 85.358 321 25 1 83 381 24 344 0.0 563
Msa0627380 AT5G11200.3 91.979 187 15 0 195 381 282 468 3.36e-118 351
Msa0627380 AT5G11200.3 72.124 226 39 2 1 202 1 226 2.83e-96 295
Msa0627380 AT5G11200.2 94.475 181 10 0 201 381 306 486 8.31e-118 351
Msa0627380 AT5G11200.2 72.124 226 39 2 1 202 1 226 1.98e-96 296
Msa0627380 AT3G61240.2 34.565 379 193 10 47 378 126 496 1.07e-58 198
Msa0627380 AT3G61240.1 34.565 379 193 10 47 378 126 496 1.07e-58 198
Msa0627380 AT2G45810.1 33.412 422 217 12 9 378 117 526 3.16e-57 195
Msa0627380 AT4G00660.1 33.810 420 214 12 11 378 96 503 1.03e-56 193
Msa0627380 AT4G00660.2 33.810 420 214 12 11 378 96 503 1.03e-56 193
Msa0627380 AT1G72730.1 32.609 368 197 8 52 373 48 410 8.56e-52 178
Msa0627380 AT3G13920.3 32.546 381 205 9 39 373 24 398 3.70e-50 174
Msa0627380 AT3G13920.1 32.546 381 205 9 39 373 34 408 4.03e-50 174
Msa0627380 AT3G19760.1 30.053 376 210 9 45 373 35 404 1.41e-48 169
Msa0627380 AT3G13920.4 34.713 314 177 7 83 373 95 403 1.73e-48 169
Msa0627380 AT1G54270.1 32.283 381 206 9 39 373 34 408 3.22e-48 169
Msa0627380 AT3G13920.2 32.958 355 187 8 39 347 34 383 4.50e-47 166
Msa0627380 AT3G13920.5 32.958 355 187 8 39 347 38 387 4.74e-47 166
Msa0627380 AT1G54270.2 34.395 314 178 7 83 373 95 403 1.01e-46 164
Msa0627380 AT1G51380.1 30.270 370 207 10 47 370 24 388 1.21e-44 159
Msa0627380 AT3G53110.1 29.425 435 231 15 1 369 51 475 3.80e-42 154
Msa0627380 AT1G55150.1 32.616 279 162 7 94 349 176 451 6.69e-36 137
Msa0627380 AT1G55150.2 32.616 279 162 7 94 349 201 476 1.06e-35 137
Msa0627380 AT3G58510.1 31.613 310 180 7 93 373 232 538 1.46e-34 135
Msa0627380 AT3G58510.3 31.613 310 180 7 93 373 232 538 1.46e-34 135
Msa0627380 AT3G58510.2 31.613 310 180 7 93 373 232 538 1.46e-34 135
Msa0627380 AT3G58570.1 34.859 284 152 7 93 345 227 508 1.94e-34 134
Msa0627380 AT3G01540.1 27.960 397 218 14 34 373 147 532 3.59e-34 134
Msa0627380 AT3G01540.4 27.960 397 218 14 34 373 147 532 3.82e-34 134
Msa0627380 AT3G01540.2 27.960 397 218 14 34 373 147 532 3.82e-34 134
Msa0627380 AT3G01540.3 27.960 397 218 14 34 373 147 532 3.82e-34 134
Msa0627380 AT1G28180.1 33.455 275 160 7 93 347 52 323 7.70e-34 129
Msa0627380 AT5G26742.1 31.183 279 164 5 94 349 184 457 1.36e-33 132
Msa0627380 AT5G26742.2 31.183 279 164 5 94 349 184 457 1.37e-33 132
Msa0627380 AT2G42520.2 31.731 312 179 7 93 373 240 548 1.44e-33 132
Msa0627380 AT2G42520.1 31.731 312 179 7 93 373 240 548 1.44e-33 132
Msa0627380 AT2G42520.3 31.731 312 179 7 93 373 240 548 1.44e-33 132
Msa0627380 AT2G33730.1 29.570 372 191 10 52 355 320 688 1.81e-33 132
Msa0627380 AT5G63120.2 30.240 334 196 13 42 347 191 515 2.31e-33 131
Msa0627380 AT5G26742.3 31.183 279 164 5 94 349 91 364 2.52e-33 131
Msa0627380 AT5G60990.1 29.967 307 174 8 93 371 92 385 9.93e-33 128
Msa0627380 AT3G06480.1 27.882 373 201 10 30 347 425 784 1.05e-32 130
Msa0627380 AT1G16280.1 30.671 313 183 10 64 347 100 407 1.23e-32 128
Msa0627380 AT5G14610.1 27.933 358 193 12 44 345 228 576 4.26e-32 128
Msa0627380 AT4G33370.1 29.132 357 195 11 47 347 99 453 6.76e-32 126
Msa0627380 AT5G51280.1 29.766 299 181 8 76 347 206 502 9.34e-32 126
Msa0627380 AT5G14610.5 28.451 355 189 12 47 345 171 516 1.76e-31 126
Msa0627380 AT5G14610.6 28.451 355 189 12 47 345 163 508 1.79e-31 126
Msa0627380 AT5G14610.2 28.451 355 189 12 47 345 163 508 1.85e-31 126
Msa0627380 AT5G14610.7 29.530 298 176 9 73 345 89 377 1.30e-30 122
Msa0627380 AT5G14610.3 29.530 298 176 9 73 345 89 377 1.30e-30 122
Msa0627380 AT1G31970.1 31.690 284 157 5 94 347 195 471 2.19e-30 122
Msa0627380 AT4G16630.1 29.221 308 183 9 94 372 242 543 1.36e-29 121
Msa0627380 AT1G20920.2 29.329 283 166 9 93 347 267 543 4.06e-29 119
Msa0627380 AT1G71370.1 28.028 289 179 5 86 346 86 373 6.12e-29 118
Msa0627380 AT3G22330.1 28.758 306 179 9 94 371 182 476 6.63e-29 118
Msa0627380 AT1G20920.4 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT1G20920.6 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT1G20920.3 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT1G20920.7 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT1G20920.5 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT1G20920.1 29.078 282 168 9 93 347 605 881 7.24e-29 119
Msa0627380 AT3G22310.2 29.677 310 171 9 94 371 194 488 8.61e-29 118
Msa0627380 AT3G22310.1 29.677 310 171 9 94 371 194 488 9.13e-29 118
Msa0627380 AT2G47330.1 30.576 278 165 10 95 347 305 579 1.45e-27 115
Msa0627380 AT3G09720.2 29.766 299 176 7 73 345 193 483 5.16e-27 112
Msa0627380 AT3G09720.1 29.766 299 176 7 73 345 193 483 5.16e-27 112
Msa0627380 AT5G05450.1 25.478 314 191 6 75 346 70 382 1.35e-26 111
Msa0627380 AT3G18600.1 29.073 313 182 14 64 343 131 436 9.68e-25 106
Msa0627380 AT5G63630.1 24.873 394 225 11 17 347 32 417 1.90e-24 105
Msa0627380 AT5G63630.2 27.682 289 175 7 91 347 325 611 2.93e-24 105
Msa0627380 AT1G12770.2 25.625 320 172 5 90 344 191 509 1.12e-23 103
Msa0627380 AT1G12770.1 25.625 320 172 5 90 344 191 509 1.12e-23 103
Msa0627380 AT3G02065.1 29.893 281 165 9 93 347 52 326 1.34e-23 101
Msa0627380 AT3G02065.3 29.893 281 165 9 93 347 189 463 6.64e-23 100
Msa0627380 AT3G02065.2 29.893 281 165 9 93 347 189 463 6.64e-23 100
Msa0627380 AT5G62190.1 27.586 319 191 9 92 379 176 485 7.19e-23 100
Msa0627380 AT1G77030.1 27.213 305 180 12 75 347 82 376 9.24e-23 100
Msa0627380 AT4G09730.1 29.492 295 168 11 88 347 187 476 1.12e-22 100
Msa0627380 AT3G09620.1 31.154 260 162 7 93 347 472 719 8.95e-22 97.8
Msa0627380 AT3G09620.2 31.154 260 162 7 93 347 473 720 9.37e-22 97.8
Msa0627380 AT1G63250.1 27.336 289 176 7 91 347 406 692 5.44e-21 95.5
Msa0627380 AT5G65900.1 27.303 304 177 12 75 343 208 502 2.34e-20 93.2
Msa0627380 AT2G07750.1 26.573 286 176 7 94 347 456 739 8.21e-19 89.0
Msa0627380 AT3G06480.2 25.513 341 186 10 30 315 425 752 8.33e-19 89.0
Msa0627380 AT3G16840.1 33.333 162 105 2 219 380 479 637 1.59e-17 85.1
Msa0627380 AT3G16840.2 33.333 162 105 2 219 380 480 638 1.64e-17 85.1
Msa0627380 AT5G63120.3 28.094 299 176 14 42 312 191 478 2.99e-17 83.6
Msa0627380 AT5G63120.4 28.094 299 176 14 42 312 191 478 2.99e-17 83.6
Msa0627380 AT5G63120.5 28.094 299 176 14 42 312 191 478 2.99e-17 83.6
Msa0627380 AT5G63120.1 27.986 293 174 13 42 306 191 474 3.12e-17 83.6
Msa0627380 AT5G14610.4 26.100 341 185 13 34 318 158 487 6.13e-17 82.8
Msa0627380 AT4G15850.1 38.793 116 68 1 236 348 329 444 1.48e-16 81.6
Msa0627380 AT5G19210.2 25.159 314 184 8 70 335 124 434 3.21e-15 77.4
Msa0627380 AT2G40700.1 40.698 86 49 1 261 346 371 454 3.96e-15 77.4
Msa0627380 AT5G19210.1 23.438 256 153 5 122 335 23 277 1.67e-11 65.1
Msa0627380 AT5G19210.3 23.438 256 153 5 122 335 23 277 1.67e-11 65.1

Find 110 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACCCTAGATCTGAATTT+TGG 0.086050 4_3:-7464398 None:intergenic
ATATTATCACTGCTTGTTTA+AGG 0.112845 4_3:+7471616 Msa0627380:three_prime_UTR
CGTGAAGAATTTGCGGCTTC+TGG 0.210712 4_3:-7464435 None:intergenic
CTACATTGTATTTGTCTATC+TGG 0.239942 4_3:-7471449 None:intergenic
AATTAACAGGGAAGAGAATA+TGG 0.250901 4_3:+7464540 Msa0627380:intron
CTCCGAGCCATTGTAGATTC+AGG 0.254688 4_3:+7466301 Msa0627380:CDS
GACTCTTCATGGTCTTGTTC+AGG 0.261990 4_3:+7468768 Msa0627380:CDS
CCATCAATTTGCATACATTC+TGG 0.285699 4_3:+7469019 Msa0627380:CDS
AATTTGCGGCTTCTGGTTCT+TGG 0.303416 4_3:-7464428 None:intergenic
CACAAGAGAACTAGCTTATC+AGG 0.318557 4_3:+7467415 Msa0627380:CDS
CCAACCCAAAATTCAGATCT+AGG 0.318747 4_3:+7464393 Msa0627380:five_prime_UTR
GTGAGAGATAAATAAGAAAA+TGG 0.325484 4_3:-7464346 None:intergenic
GTGGGTAGAGCTGGTAGATT+TGG 0.332706 4_3:+7470662 Msa0627380:CDS
CGAACAAAGTACTATACTTT+AGG 0.346342 4_3:-7471569 None:intergenic
AAGACCATGAAGAGTCAATT+TGG 0.351581 4_3:-7468761 None:intergenic
CTACGTTGGGATCCATAGTT+CGG 0.364465 4_3:+7466246 Msa0627380:CDS
CACATTGTTGTTGGAACACC+TGG 0.373009 4_3:+7467707 Msa0627380:CDS
CCAGAATGTATGCAAATTGA+TGG 0.376590 4_3:-7469019 None:intergenic
TGACTCTGAAGTTCTTAATC+AGG 0.377300 4_3:+7470724 Msa0627380:CDS
GTGGAGGTGTCAATTTGTTC+AGG 0.377618 4_3:-7470896 None:intergenic
CAGCAAATTGATCCTGTTCC+TGG 0.384946 4_3:+7467365 Msa0627380:intron
CAAGGTCCTTATCTCTAGTC+AGG 0.399693 4_3:-7467742 None:intergenic
ACATCATCACTTGTTTATCA+TGG 0.400130 4_3:-7467963 None:intergenic
TAGGTTTGAGGTTGATATAA+AGG 0.405007 4_3:+7470868 Msa0627380:CDS
GAGGCCAAATTGACTCTTCA+TGG 0.406230 4_3:+7468757 Msa0627380:CDS
GTCACAAAACTTGATCAATT+AGG 0.410712 4_3:-7471217 None:intergenic
AGTCTCGAAATCCCGAACTA+TGG 0.410983 4_3:-7466258 None:intergenic
TGTTGTGCAGGGGCTACGTT+GGG 0.411662 4_3:+7466233 Msa0627380:intron
TACGTTGGGATCCATAGTTC+GGG 0.412375 4_3:+7466247 Msa0627380:CDS
TCCGAGCCATTGTAGATTCA+GGG 0.416662 4_3:+7466302 Msa0627380:CDS
AATTGATCCTGTTCCTGGTC+AGG 0.417735 4_3:+7467370 Msa0627380:CDS
AACTGTTAGGTGGGTAGAGC+TGG 0.421562 4_3:+7470653 Msa0627380:intron
TTGAAAACGTGAAGAATTTG+CGG 0.434302 4_3:-7464442 None:intergenic
CAGATAGACAAATACAATGT+AGG 0.437325 4_3:+7471450 Msa0627380:three_prime_UTR
CAAATGATCTGTTGCCGACT+GGG 0.439778 4_3:+7471258 Msa0627380:three_prime_UTR
TTCAGCTTACGATTCTTCTC+TGG 0.442230 4_3:-7468896 None:intergenic
ACAAATGATCTGTTGCCGAC+TGG 0.447494 4_3:+7471257 Msa0627380:three_prime_UTR
GGAGAAGCTCTGGTTTCAAC+AGG 0.450921 4_3:-7466282 None:intergenic
AGCAATTACCCTGTGAAGAT+AGG 0.456356 4_3:-7470504 None:intergenic
CATCATCACTTGTTTATCAT+GGG 0.463946 4_3:-7467962 None:intergenic
ATCATCTACATAAATTTCCA+TGG 0.469432 4_3:-7468734 None:intergenic
AGATAGGTATCAGCAGAATC+AGG 0.470818 4_3:-7470488 None:intergenic
TCAGGTGCAATCTAGGTTTG+AGG 0.476362 4_3:+7470856 Msa0627380:intron
GCTGCAACCTGACCAGGAAC+AGG 0.478885 4_3:-7467377 None:intergenic
TTGCGGCTTCTGGTTCTTGG+AGG 0.490228 4_3:-7464425 None:intergenic
TGCTGAACCTCTCAACTTCG+TGG 0.490700 4_3:-7467598 None:intergenic
TTTCAGATTGAAGCGATACA+AGG 0.493825 4_3:+7470367 Msa0627380:intron
GGCTCGAGTGCATATTCCAT+TGG 0.494009 4_3:+7471637 Msa0627380:three_prime_UTR
ACAATGGCTCGGAGAAGCTC+TGG 0.495080 4_3:-7466292 None:intergenic
CTGCTGATACCTATCTTCAC+AGG 0.495663 4_3:+7470495 Msa0627380:CDS
GACTATACTGAATCATGTAA+TGG 0.507545 4_3:-7466364 None:intergenic
GAGTGCCCACACATTGTTGT+TGG 0.508601 4_3:+7467698 Msa0627380:CDS
CTGGAATGTCACAAGAAGAA+AGG 0.515744 4_3:+7469038 Msa0627380:CDS
GATCTGTTGCCGACTGGGGA+TGG 0.516444 4_3:+7471263 Msa0627380:three_prime_UTR
TATAGTACTTTGTTCGTGAT+GGG 0.521979 4_3:+7471576 Msa0627380:three_prime_UTR
GTATAGTACTTTGTTCGTGA+TGG 0.524676 4_3:+7471575 Msa0627380:three_prime_UTR
CTATGGTGGTGTCAACATCA+AGG 0.524822 4_3:+7467652 Msa0627380:CDS
CAACCCAAAATTCAGATCTA+GGG 0.524915 4_3:+7464394 Msa0627380:five_prime_UTR
AGAAACCTTTCTAAAACCAA+TGG 0.526062 4_3:-7471653 None:intergenic
GCTGGTAGATTTGGCACCAA+GGG 0.527211 4_3:+7470671 Msa0627380:CDS
ACAAGTGCTGCAACCTGACC+AGG 0.529516 4_3:-7467383 None:intergenic
TTGTTGTGCAGGGGCTACGT+TGG 0.530806 4_3:+7466232 Msa0627380:intron
TAAATAAGAAAATGGAGCGT+GGG 0.537274 4_3:-7464338 None:intergenic
AGATAGACAAATACAATGTA+GGG 0.538975 4_3:+7471451 Msa0627380:three_prime_UTR
CTGACTAGAGATAAGGACCT+TGG 0.544589 4_3:+7467743 Msa0627380:CDS
TAGTAAAACTTGCCTTCTGA+AGG 0.545476 4_3:-7466334 None:intergenic
GGGTTTGAGCATCCTTCAGA+AGG 0.549144 4_3:+7466322 Msa0627380:CDS
TGATGAGTGTGACAAGATGC+TGG 0.551103 4_3:+7467793 Msa0627380:CDS
AGCTGGTAGATTTGGCACCA+AGG 0.557173 4_3:+7470670 Msa0627380:CDS
CTCGTGGCAACCGATTTAGT+AGG 0.561671 4_3:+7470416 Msa0627380:CDS
GACAAGATGCTGGAATCACT+TGG 0.563752 4_3:+7467803 Msa0627380:CDS
CAGAATGTATGCAAATTGAT+GGG 0.563982 4_3:-7469018 None:intergenic
TCTTGCCCTGACTAGAGATA+AGG 0.564398 4_3:+7467736 Msa0627380:CDS
ATTAACAGGGAAGAGAATAT+GGG 0.566898 4_3:+7464541 Msa0627380:intron
GGCAACCGATTTAGTAGGGA+GGG 0.566914 4_3:+7470421 Msa0627380:CDS
AAAAGTAATTGCAAGCCCCT+TGG 0.567368 4_3:-7470687 None:intergenic
ATAAATAAGAAAATGGAGCG+TGG 0.567522 4_3:-7464339 None:intergenic
CGATACAAGGGCTTCAAAGA+GGG 0.568834 4_3:+7470380 Msa0627380:CDS
TCGTGGCAACCGATTTAGTA+GGG 0.570668 4_3:+7470417 Msa0627380:CDS
ACCCTGAATCTACAATGGCT+CGG 0.572434 4_3:-7466303 None:intergenic
GGTGTTCCAACAACAATGTG+TGG 0.577454 4_3:-7467704 None:intergenic
CAACCGATTTAGTAGGGAGG+GGG 0.579596 4_3:+7470423 Msa0627380:CDS
TCATCTACATAAATTTCCAT+GGG 0.581419 4_3:-7468733 None:intergenic
GCAACCGATTTAGTAGGGAG+GGG 0.585593 4_3:+7470422 Msa0627380:CDS
AGATTTGCCACGAAGTTGAG+AGG 0.588345 4_3:+7467591 Msa0627380:intron
ATGCAGGAGCATACAAAACA+TGG 0.599811 4_3:-7471414 None:intergenic
GGAAATTTATGTAGATGATG+AGG 0.602038 4_3:+7468738 Msa0627380:CDS
GCGATACAAGGGCTTCAAAG+AGG 0.604199 4_3:+7470379 Msa0627380:CDS
AAGGTCCTTATCTCTAGTCA+GGG 0.605894 4_3:-7467741 None:intergenic
CTCAAACCCTGAATCTACAA+TGG 0.606652 4_3:-7466308 None:intergenic
ACCTTGGTTTGAAGAATGTG+AGG 0.606908 4_3:+7467759 Msa0627380:CDS
GTCAGGGCAAGAATCCTCCC+AGG 0.611803 4_3:-7467725 None:intergenic
ATCATCACTTGTTTATCATG+GGG 0.613006 4_3:-7467961 None:intergenic
AACATTAACAACGTGAACAA+CGG 0.613413 4_3:-7471522 None:intergenic
GATACAAGGGCTTCAAAGAG+GGG 0.617527 4_3:+7470381 Msa0627380:CDS
GTGTTCCAACAACAATGTGT+GGG 0.623994 4_3:-7467703 None:intergenic
GCCTCACATTCTTCAAACCA+AGG 0.633068 4_3:-7467760 None:intergenic
TTCAGATTGAAGCGATACAA+GGG 0.636996 4_3:+7470368 Msa0627380:intron
AAGTATCTTACTGTATGTGG+AGG 0.637443 4_3:-7470912 None:intergenic
GATAAGCTAGTTCTCTTGTG+TGG 0.648872 4_3:-7467412 None:intergenic
AGACAAATACAATGTAGGGT+CGG 0.653247 4_3:+7471455 Msa0627380:three_prime_UTR
CTGGTAGATTTGGCACCAAG+GGG 0.659086 4_3:+7470672 Msa0627380:CDS
TGCTGATACCTATCTTCACA+GGG 0.659100 4_3:+7470496 Msa0627380:CDS
AAATGATCTGTTGCCGACTG+GGG 0.667196 4_3:+7471259 Msa0627380:three_prime_UTR
ACATTGTTGTTGGAACACCT+GGG 0.674278 4_3:+7467708 Msa0627380:CDS
GGGGAAGCAGAGAATTCTCG+TGG 0.676806 4_3:+7470400 Msa0627380:CDS
ACAACAAATCCATCCCCAGT+CGG 0.685926 4_3:-7471272 None:intergenic
GAAAGATACTGAAGTTTACG+AGG 0.689385 4_3:+7464570 Msa0627380:CDS
TGGCAACCGATTTAGTAGGG+AGG 0.690164 4_3:+7470420 Msa0627380:CDS
TTGTTGTTGGAACACCTGGG+AGG 0.722510 4_3:+7467711 Msa0627380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTCAATTAATC+AGG + chr4_3:7467111-7467130 Msa0627380:intron 10.0%
!!! ATATTCATTTAATTTTGTAT+GGG + chr4_3:7468173-7468192 Msa0627380:intron 10.0%
!!! TAAATAATATCATGTTATTT+TGG + chr4_3:7468492-7468511 Msa0627380:intron 10.0%
!! TACATTAAAAAATAAAAACT+CGG - chr4_3:7468671-7468690 None:intergenic 10.0%
!!! AAACTAATAGATTTTTTTTT+AGG + chr4_3:7470236-7470255 Msa0627380:intron 10.0%
!!! TAAAAAAACTAACTTTTTGA+CGG - chr4_3:7464662-7464681 None:intergenic 15.0%
!! ACACATTTCATTAATAAATA+TGG + chr4_3:7465384-7465403 Msa0627380:intron 15.0%
!! TAATAAATATGGTTTAAGTA+AGG + chr4_3:7465395-7465414 Msa0627380:intron 15.0%
!! ACAAAATTAAATGAATATGA+GGG - chr4_3:7468171-7468190 None:intergenic 15.0%
!! TACAAAATTAAATGAATATG+AGG - chr4_3:7468172-7468191 None:intergenic 15.0%
!!! CATATTCATTTAATTTTGTA+TGG + chr4_3:7468172-7468191 Msa0627380:intron 15.0%
!! GCAAAAAAAAAAATCATATT+TGG - chr4_3:7468266-7468285 None:intergenic 15.0%
!! AAATGCATTTAAACAAAATA+TGG - chr4_3:7468404-7468423 None:intergenic 15.0%
!! TACAAATTAATACAGAAAAA+AGG - chr4_3:7468474-7468493 None:intergenic 15.0%
!! TGCTAAAATTATAGTAATAT+AGG - chr4_3:7469230-7469249 None:intergenic 15.0%
!!! TATTACTATAATTTTAGCAT+TGG + chr4_3:7469231-7469250 Msa0627380:intron 15.0%
!!! ATTGTTGACTTTAATTTTTA+TGG + chr4_3:7469478-7469497 Msa0627380:intron 15.0%
!!! TCTAAAATCATATTTATCAA+TGG - chr4_3:7470018-7470037 None:intergenic 15.0%
!! ATTCTCTTCTATTAATTTAA+GGG + chr4_3:7470210-7470229 Msa0627380:intron 15.0%
!!! TTTTTTTAGGTGAAAAATTA+AGG + chr4_3:7470249-7470268 Msa0627380:intron 15.0%
!!! TTTTTTAGGTGAAAAATTAA+GGG + chr4_3:7470250-7470269 Msa0627380:intron 15.0%
!!! TCTAGTTTAAATATAGTTTT+TGG + chr4_3:7470549-7470568 Msa0627380:intron 15.0%
!!! TACTTTTTCTTAATAGTTTA+TGG + chr4_3:7470930-7470949 Msa0627380:intron 15.0%
!! TTTAAACTGTAATGAAAAAT+AGG + chr4_3:7471345-7471364 Msa0627380:three_prime_UTR 15.0%
!! TTAAACTGTAATGAAAAATA+GGG + chr4_3:7471346-7471365 Msa0627380:three_prime_UTR 15.0%
!! TATTGAAAATCGAATTGATA+AGG - chr4_3:7464486-7464505 None:intergenic 20.0%
!!! TTTTATTCTTCTTCTTTTTG+TGG + chr4_3:7464677-7464696 Msa0627380:intron 20.0%
!! ATAAATAGAGAAATATCCAA+TGG + chr4_3:7464925-7464944 Msa0627380:intron 20.0%
!! TATTATTATCATACTTCCAT+TGG - chr4_3:7464944-7464963 None:intergenic 20.0%
!! ATTCAATTTGTGTAATTGAA+TGG + chr4_3:7465079-7465098 Msa0627380:intron 20.0%
!! TTCAATTTGTGTAATTGAAT+GGG + chr4_3:7465080-7465099 Msa0627380:intron 20.0%
!! ATTTGTAGTAATTAGTATAC+TGG + chr4_3:7465335-7465354 Msa0627380:intron 20.0%
!!! AAAACCTAATATTACTTTTG+AGG - chr4_3:7465754-7465773 None:intergenic 20.0%
!!! TAATATTAGGTTTTCATTTG+AGG + chr4_3:7465760-7465779 Msa0627380:intron 20.0%
!! AGTAAATCAAATTCTTGATA+TGG - chr4_3:7465953-7465972 None:intergenic 20.0%
!!! TATCAAGAATTTGATTTACT+TGG + chr4_3:7465953-7465972 Msa0627380:intron 20.0%
!!! AGTCATTTTAGCATTAATTA+TGG + chr4_3:7465995-7466014 Msa0627380:intron 20.0%
!!! TTTTAGCATTAATTATGGTT+AGG + chr4_3:7466000-7466019 Msa0627380:intron 20.0%
!! TTTAGCATTAATTATGGTTA+GGG + chr4_3:7466001-7466020 Msa0627380:intron 20.0%
!! AAATCAATCTAACAATATAG+TGG - chr4_3:7466132-7466151 None:intergenic 20.0%
!! AGTGTAAAATATATTGAGAA+CGG - chr4_3:7466521-7466540 None:intergenic 20.0%
!! TATGAATACATCACAAAAAT+TGG + chr4_3:7467152-7467171 Msa0627380:intron 20.0%
!! TACATCAAGAAAATTAAATG+AGG - chr4_3:7468120-7468139 None:intergenic 20.0%
!! CAAAATTAAATGAATATGAG+GGG - chr4_3:7468170-7468189 None:intergenic 20.0%
!!! TATTTTGAGAGCATTTAATA+AGG + chr4_3:7468205-7468224 Msa0627380:intron 20.0%
!!! ATTTGGTAGTCTAAAATATA+AGG - chr4_3:7468249-7468268 None:intergenic 20.0%
!!! TTTGTTTAAATGCATTTTGT+TGG + chr4_3:7468407-7468426 Msa0627380:intron 20.0%
!! TTTGCAAATTAATACAAAGA+AGG - chr4_3:7468626-7468645 None:intergenic 20.0%
!!! AAATAAAAACTCGGTTATTT+TGG - chr4_3:7468662-7468681 None:intergenic 20.0%
!! GAAAGATATCAACAATAATA+GGG - chr4_3:7468818-7468837 None:intergenic 20.0%
!! AGAAAGATATCAACAATAAT+AGG - chr4_3:7468819-7468838 None:intergenic 20.0%
!!! TTTTGACAAAAATAACAACT+TGG - chr4_3:7468949-7468968 None:intergenic 20.0%
!! GATTCTCTTCTATTAATTTA+AGG + chr4_3:7470209-7470228 Msa0627380:intron 20.0%
!! ATAAGCATATAAAGATAGAA+GGG - chr4_3:7470624-7470643 None:intergenic 20.0%
!! TGAAAATAAAGTTTAGCTAT+TGG - chr4_3:7470839-7470858 None:intergenic 20.0%
!!! AATAGCTAAACTTTATTTTC+AGG + chr4_3:7470838-7470857 Msa0627380:intron 20.0%
! GTGAGAGATAAATAAGAAAA+TGG - chr4_3:7464349-7464368 None:intergenic 25.0%
! AAATCGAATTGATAAGGTTA+GGG - chr4_3:7464480-7464499 None:intergenic 25.0%
! AAAATCGAATTGATAAGGTT+AGG - chr4_3:7464481-7464500 None:intergenic 25.0%
! AAACTTTGAATGTTAGTTGT+CGG + chr4_3:7465189-7465208 Msa0627380:intron 25.0%
!!! TTTTTTAACTGTTGCAGATT+TGG + chr4_3:7465267-7465286 Msa0627380:intron 25.0%
!!! TTTTTAACTGTTGCAGATTT+GGG + chr4_3:7465268-7465287 Msa0627380:intron 25.0%
! AGATATAACTAAATCACCAA+AGG - chr4_3:7465295-7465314 None:intergenic 25.0%
!!! AGTAATTAGTATACTGGTTT+TGG + chr4_3:7465341-7465360 Msa0627380:intron 25.0%
! TTATGAAAAGAGTGAAATTG+TGG + chr4_3:7465476-7465495 Msa0627380:intron 25.0%
! AATGCTATGATGCTTAAAAT+TGG - chr4_3:7465828-7465847 None:intergenic 25.0%
! GAAAACAAAGATCAACAAAT+AGG - chr4_3:7465899-7465918 None:intergenic 25.0%
!! ATGAGAGTACATATAAACAT+GGG - chr4_3:7466455-7466474 None:intergenic 25.0%
! ATGAGAATTTATAAGATGAG+AGG - chr4_3:7466735-7466754 None:intergenic 25.0%
!! ATTTGTCTCTTTTGCTTATT+TGG + chr4_3:7466856-7466875 Msa0627380:intron 25.0%
!! TTTGTCTCTTTTGCTTATTT+GGG + chr4_3:7466857-7466876 Msa0627380:intron 25.0%
! AATACATCACAAAAATTGGT+TGG + chr4_3:7467156-7467175 Msa0627380:intron 25.0%
! TGGTAAACCTTTACATTAAA+AGG + chr4_3:7467176-7467195 Msa0627380:intron 25.0%
!! AAAACAGCAACTTTTATATC+TGG - chr4_3:7467632-7467651 None:intergenic 25.0%
!!! ATAAAAGTTGCTGTTTTCTA+TGG + chr4_3:7467635-7467654 Msa0627380:CDS 25.0%
!! AGTATTTATGTGGTAGTTTT+TGG + chr4_3:7468305-7468324 Msa0627380:intron 25.0%
! ATTCAAAACACATCACAAAT+AGG - chr4_3:7468444-7468463 None:intergenic 25.0%
! TCATCTACATAAATTTCCAT+GGG - chr4_3:7468736-7468755 None:intergenic 25.0%
! ATCATCTACATAAATTTCCA+TGG - chr4_3:7468737-7468756 None:intergenic 25.0%
!! ATTTAATGTAGTGCTGAAAA+AGG - chr4_3:7468868-7468887 None:intergenic 25.0%
! TATTATGCAAGATTATCTCT+TGG + chr4_3:7469297-7469316 Msa0627380:intron 25.0%
! ATTATGCAAGATTATCTCTT+GGG + chr4_3:7469298-7469317 Msa0627380:intron 25.0%
! CAATCTCTTACTTAATACTA+TGG - chr4_3:7469348-7469367 None:intergenic 25.0%
!!! AGAGATTGCGTTTTTTATAT+TGG + chr4_3:7469360-7469379 Msa0627380:intron 25.0%
!! TTGTAGGATTGATAGTAAAA+TGG + chr4_3:7469427-7469446 Msa0627380:intron 25.0%
! AGTTTCAAGATCTTGTAAAT+TGG + chr4_3:7469707-7469726 Msa0627380:intron 25.0%
! GTTTCAAGATCTTGTAAATT+GGG + chr4_3:7469708-7469727 Msa0627380:intron 25.0%
!! TGGATCCAACAATTTTATAA+TGG + chr4_3:7469811-7469830 Msa0627380:intron 25.0%
!! GGATCCAACAATTTTATAAT+GGG + chr4_3:7469812-7469831 Msa0627380:intron 25.0%
!! GATCCAACAATTTTATAATG+GGG + chr4_3:7469813-7469832 Msa0627380:intron 25.0%
! AATCATATTTATCAATGGCA+GGG - chr4_3:7470013-7470032 None:intergenic 25.0%
! AAATCATATTTATCAATGGC+AGG - chr4_3:7470014-7470033 None:intergenic 25.0%
!!! TCGTTGATAACTATGATTAT+AGG + chr4_3:7470101-7470120 Msa0627380:intron 25.0%
! GATAAGCATATAAAGATAGA+AGG - chr4_3:7470625-7470644 None:intergenic 25.0%
!!! TTGGTTAATAAAAGCATCAA+TGG - chr4_3:7470820-7470839 None:intergenic 25.0%
!!! AAAAAGTATCTTACTGTATG+TGG - chr4_3:7470918-7470937 None:intergenic 25.0%
! TGCACAAAGTTTATTAGAAT+TGG + chr4_3:7470972-7470991 Msa0627380:intron 25.0%
!!! GCTTTATAAAGGTTTTATCT+TGG + chr4_3:7471158-7471177 Msa0627380:intron 25.0%
! TGTCTATCTGGATAAAAAAA+CGG - chr4_3:7471440-7471459 None:intergenic 25.0%
! AGATAGACAAATACAATGTA+GGG + chr4_3:7471451-7471470 Msa0627380:three_prime_UTR 25.0%
! ATATTATCACTGCTTGTTTA+AGG + chr4_3:7471616-7471635 Msa0627380:three_prime_UTR 25.0%
!!! ATATTCCATTGGTTTTAGAA+AGG + chr4_3:7471648-7471667 Msa0627380:three_prime_UTR 25.0%
ATAAATAAGAAAATGGAGCG+TGG - chr4_3:7464342-7464361 None:intergenic 30.0%
! AAACCCTAGATCTGAATTTT+GGG - chr4_3:7464400-7464419 None:intergenic 30.0%
! AAAACCCTAGATCTGAATTT+TGG - chr4_3:7464401-7464420 None:intergenic 30.0%
TTGAAAACGTGAAGAATTTG+CGG - chr4_3:7464445-7464464 None:intergenic 30.0%
! CAAATTCTTCACGTTTTCAA+AGG + chr4_3:7464445-7464464 Msa0627380:five_prime_UTR 30.0%
AATTGATAAGGTTAGGGTTA+GGG - chr4_3:7464474-7464493 None:intergenic 30.0%
ATTCTCTTCCCTGTTAATTA+GGG - chr4_3:7464539-7464558 None:intergenic 30.0%
TATTCTCTTCCCTGTTAATT+AGG - chr4_3:7464540-7464559 None:intergenic 30.0%
AATTAACAGGGAAGAGAATA+TGG + chr4_3:7464540-7464559 Msa0627380:intron 30.0%
ATTAACAGGGAAGAGAATAT+GGG + chr4_3:7464541-7464560 Msa0627380:intron 30.0%
TTGTGTAATTGAATGGGATA+AGG + chr4_3:7465086-7465105 Msa0627380:intron 30.0%
TACGTCAGACTTTAGTAAAT+TGG + chr4_3:7465158-7465177 Msa0627380:intron 30.0%
AACTTTGAATGTTAGTTGTC+GGG + chr4_3:7465190-7465209 Msa0627380:intron 30.0%
GTTGTATAGTTTGGTATACT+GGG - chr4_3:7465609-7465628 None:intergenic 30.0%
TGTTGTATAGTTTGGTATAC+TGG - chr4_3:7465610-7465629 None:intergenic 30.0%
! ATGTTAGTAATAGTGGGATA+AGG - chr4_3:7465639-7465658 None:intergenic 30.0%
TTATCCCACTATTACTAACA+TGG + chr4_3:7465638-7465657 Msa0627380:intron 30.0%
ACATCCATGTTAGTAATAGT+GGG - chr4_3:7465645-7465664 None:intergenic 30.0%
TGCACCTCAAAAGTAATATT+AGG + chr4_3:7465747-7465766 Msa0627380:intron 30.0%
TTAAGCATCATAGCATTAAC+TGG + chr4_3:7465831-7465850 Msa0627380:intron 30.0%
TCAAATTCTTGATATGGACT+AGG - chr4_3:7465947-7465966 None:intergenic 30.0%
ATGCTAAAATGACTATAGAC+CGG - chr4_3:7465989-7466008 None:intergenic 30.0%
!! CTAACAATATAGTGGATAGT+TGG - chr4_3:7466124-7466143 None:intergenic 30.0%
ACAAAAGAAAATACAGAGTG+AGG - chr4_3:7466216-7466235 None:intergenic 30.0%
!! TGTATTTTCTTTTGTTGTGC+AGG + chr4_3:7466221-7466240 Msa0627380:intron 30.0%
!! GTATTTTCTTTTGTTGTGCA+GGG + chr4_3:7466222-7466241 Msa0627380:intron 30.0%
!! TATTTTCTTTTGTTGTGCAG+GGG + chr4_3:7466223-7466242 Msa0627380:intron 30.0%
GACTATACTGAATCATGTAA+TGG - chr4_3:7466367-7466386 None:intergenic 30.0%
! TCTACAGACTTCTTATGTTT+TGG + chr4_3:7466395-7466414 Msa0627380:intron 30.0%
! CTACAGACTTCTTATGTTTT+GGG + chr4_3:7466396-7466415 Msa0627380:intron 30.0%
! CATGAGAGTACATATAAACA+TGG - chr4_3:7466456-7466475 None:intergenic 30.0%
!! TTAATAGACTTGGTGTTATG+TGG - chr4_3:7466643-7466662 None:intergenic 30.0%
AAGTCTATTAACTCTACCAA+GGG + chr4_3:7466652-7466671 Msa0627380:intron 30.0%
ATCACTGAAAAATTTATCCG+AGG - chr4_3:7466838-7466857 None:intergenic 30.0%
! TTGTCTCTTTTGCTTATTTG+GGG + chr4_3:7466858-7466877 Msa0627380:intron 30.0%
CAAAATATGTGTTTGGTCAT+AGG - chr4_3:7466978-7466997 None:intergenic 30.0%
CAAGCAACAAAATATGTGTT+TGG - chr4_3:7466985-7467004 None:intergenic 30.0%
ACCTTTACATTAAAAGGATC+TGG + chr4_3:7467182-7467201 Msa0627380:intron 30.0%
CAGATCATATATACTTACTG+AGG + chr4_3:7467205-7467224 Msa0627380:intron 30.0%
AGAAGCAAAGAAAATTGTAG+CGG - chr4_3:7467237-7467256 None:intergenic 30.0%
! TGATAGTGTATTGGAAACAA+AGG - chr4_3:7467522-7467541 None:intergenic 30.0%
! ATACGTTTGTGATAGTGTAT+TGG - chr4_3:7467531-7467550 None:intergenic 30.0%
ATCATCACTTGTTTATCATG+GGG - chr4_3:7467964-7467983 None:intergenic 30.0%
CATCATCACTTGTTTATCAT+GGG - chr4_3:7467965-7467984 None:intergenic 30.0%
ACATCATCACTTGTTTATCA+TGG - chr4_3:7467966-7467985 None:intergenic 30.0%
TCCTTATAATTGAGACAGTT+GGG - chr4_3:7468058-7468077 None:intergenic 30.0%
TTCCTTATAATTGAGACAGT+TGG - chr4_3:7468059-7468078 None:intergenic 30.0%
! ATGAATATGAGGGGTAATTT+TGG - chr4_3:7468161-7468180 None:intergenic 30.0%
! TTAATAAGGCGAAGTTGATT+AGG + chr4_3:7468219-7468238 Msa0627380:intron 30.0%
TAATGTGATGCGAAAATAAC+AGG - chr4_3:7468378-7468397 None:intergenic 30.0%
CTGATGACATTCAACAAAAA+TGG - chr4_3:7468531-7468550 None:intergenic 30.0%
! CATTTTTGTTGAATGTCATC+AGG + chr4_3:7468529-7468548 Msa0627380:intron 30.0%
!!! TGCATTTTGTTGATTTTGTG+TGG + chr4_3:7468569-7468588 Msa0627380:intron 30.0%
GGAAATTTATGTAGATGATG+AGG + chr4_3:7468738-7468757 Msa0627380:CDS 30.0%
CAGAATGTATGCAAATTGAT+GGG - chr4_3:7469021-7469040 None:intergenic 30.0%
CAGCATATAAAACATATACC+CGG - chr4_3:7469174-7469193 None:intergenic 30.0%
! TGCACGAATAGTCAATATTT+TGG - chr4_3:7469274-7469293 None:intergenic 30.0%
AAATCCTACAAAAAGGGATT+AGG - chr4_3:7469408-7469427 None:intergenic 30.0%
CCTACAAAATCCTACAAAAA+GGG - chr4_3:7469414-7469433 None:intergenic 30.0%
TCCTACAAAATCCTACAAAA+AGG - chr4_3:7469415-7469434 None:intergenic 30.0%
TAATTTACAGGAAAGGGATT+GGG - chr4_3:7469519-7469538 None:intergenic 30.0%
TTAATTTACAGGAAAGGGAT+TGG - chr4_3:7469520-7469539 None:intergenic 30.0%
TTACAAGATCTTGAAACTTC+TGG - chr4_3:7469705-7469724 None:intergenic 30.0%
TAGGCATAGTTATCAATTGT+GGG + chr4_3:7469773-7469792 Msa0627380:intron 30.0%
TCACCCCATTATAAAATTGT+TGG - chr4_3:7469819-7469838 None:intergenic 30.0%
TCAGTCTTAATAAACCAAGA+TGG + chr4_3:7469871-7469890 Msa0627380:intron 30.0%
ATTCATTGAGAAAAGTTACC+AGG + chr4_3:7470065-7470084 Msa0627380:intron 30.0%
AATCATAGTTATCAACGACA+GGG - chr4_3:7470099-7470118 None:intergenic 30.0%
TAATCATAGTTATCAACGAC+AGG - chr4_3:7470100-7470119 None:intergenic 30.0%
!!! ATAGTTTTTGGCTTGTAGTA+TGG + chr4_3:7470561-7470580 Msa0627380:intron 30.0%
! AGTTCTTAATCAGGTTAGTT+AGG + chr4_3:7470733-7470752 Msa0627380:intron 30.0%
! TCTCTCATTTTCATTGAAAC+TGG + chr4_3:7470772-7470791 Msa0627380:intron 30.0%
! TCATTTTCATTGAAACTGGA+GGG + chr4_3:7470776-7470795 Msa0627380:intron 30.0%
!!! TTTATTTTCAGGTGCAATCT+AGG + chr4_3:7470849-7470868 Msa0627380:intron 30.0%
!! TAGGTTTGAGGTTGATATAA+AGG + chr4_3:7470868-7470887 Msa0627380:CDS 30.0%
ACAAGTGTGATGCTTTATAA+AGG + chr4_3:7471147-7471166 Msa0627380:intron 30.0%
GTCACAAAACTTGATCAATT+AGG - chr4_3:7471220-7471239 None:intergenic 30.0%
!! TCAAGTTTTGTGACATGATT+TGG + chr4_3:7471226-7471245 Msa0627380:three_prime_UTR 30.0%
TGAAAAATAGGGAATTCGAA+TGG + chr4_3:7471357-7471376 Msa0627380:three_prime_UTR 30.0%
CTACATTGTATTTGTCTATC+TGG - chr4_3:7471452-7471471 None:intergenic 30.0%
CAGATAGACAAATACAATGT+AGG + chr4_3:7471450-7471469 Msa0627380:three_prime_UTR 30.0%
AACATTAACAACGTGAACAA+CGG - chr4_3:7471525-7471544 None:intergenic 30.0%
! CGAACAAAGTACTATACTTT+AGG - chr4_3:7471572-7471591 None:intergenic 30.0%
TATAGTACTTTGTTCGTGAT+GGG + chr4_3:7471576-7471595 Msa0627380:three_prime_UTR 30.0%
!! AGAAACCTTTCTAAAACCAA+TGG - chr4_3:7471656-7471675 None:intergenic 30.0%
!!! TGAATTTTGGGTTGGGTTTT+AGG - chr4_3:7464388-7464407 None:intergenic 35.0%
!!! CTAGATCTGAATTTTGGGTT+GGG - chr4_3:7464395-7464414 None:intergenic 35.0%
CAACCCAAAATTCAGATCTA+GGG + chr4_3:7464394-7464413 Msa0627380:five_prime_UTR 35.0%
GAATTGATAAGGTTAGGGTT+AGG - chr4_3:7464475-7464494 None:intergenic 35.0%
AGCTGAAAACCCTAATTAAC+AGG + chr4_3:7464527-7464546 Msa0627380:intron 35.0%
GCTGAAAACCCTAATTAACA+GGG + chr4_3:7464528-7464547 Msa0627380:intron 35.0%
GAAAGATACTGAAGTTTACG+AGG + chr4_3:7464570-7464589 Msa0627380:CDS 35.0%
TAAAGTTTCGTGCTTGAAAG+TGG + chr4_3:7464794-7464813 Msa0627380:intron 35.0%
TTGATGCAATCGATGTTAAC+TGG + chr4_3:7464975-7464994 Msa0627380:intron 35.0%
TATAGTTTGGTATACTGGGA+AGG - chr4_3:7465605-7465624 None:intergenic 35.0%
GACATCCATGTTAGTAATAG+TGG - chr4_3:7465646-7465665 None:intergenic 35.0%
TACTAACATGGATGTCTGAA+TGG + chr4_3:7465650-7465669 Msa0627380:intron 35.0%
!!! TTACTTTTGAGGTGCAAATC+AGG - chr4_3:7465743-7465762 None:intergenic 35.0%
!! TTCTTGATATGGACTAGGAA+AGG - chr4_3:7465942-7465961 None:intergenic 35.0%
TGCTAAAATGACTATAGACC+GGG - chr4_3:7465988-7466007 None:intergenic 35.0%
AGGAAGAGAAACTCAAAAAG+TGG - chr4_3:7466196-7466215 None:intergenic 35.0%
TAGTAAAACTTGCCTTCTGA+AGG - chr4_3:7466337-7466356 None:intergenic 35.0%
AGTAGACGACATCAATACAA+TGG - chr4_3:7466490-7466509 None:intergenic 35.0%
CTTGGTAGAGTTAATAGACT+TGG - chr4_3:7466653-7466672 None:intergenic 35.0%
CAAGTCTATTAACTCTACCA+AGG + chr4_3:7466651-7466670 Msa0627380:intron 35.0%
! GTACTCTAGAAGACAGAATA+GGG - chr4_3:7466779-7466798 None:intergenic 35.0%
!! CTAGAGTACCTTTTGATAAC+AGG + chr4_3:7466790-7466809 Msa0627380:intron 35.0%
AGACAATGCCTGTTATCAAA+AGG - chr4_3:7466801-7466820 None:intergenic 35.0%
TCTCTAATAGTCAAGTTCCT+CGG + chr4_3:7466818-7466837 Msa0627380:intron 35.0%
! TGTCTCTTTTGCTTATTTGG+GGG + chr4_3:7466859-7466878 Msa0627380:intron 35.0%
! TTGTTGCTTGTTAATCTCCT+TGG + chr4_3:7466995-7467014 Msa0627380:intron 35.0%
ACAAAGATAGATGAGAACCA+AGG - chr4_3:7467015-7467034 None:intergenic 35.0%
! GCCAGATCCTTTTAATGTAA+AGG - chr4_3:7467186-7467205 None:intergenic 35.0%
TCCATTCCTAAAATTGCTTG+GGG - chr4_3:7467284-7467303 None:intergenic 35.0%
GTCCATTCCTAAAATTGCTT+GGG - chr4_3:7467285-7467304 None:intergenic 35.0%
TCATTTGCCAAGCAAAATCT+GGG + chr4_3:7467306-7467325 Msa0627380:intron 35.0%
!!! AAAGTTGCTGTTTTCTATGG+TGG + chr4_3:7467638-7467657 Msa0627380:CDS 35.0%
! ATCTTTTCTCATGTCTGCAA+AGG - chr4_3:7467917-7467936 None:intergenic 35.0%
TGAATTTCTTGCAAACAGGT+CGG - chr4_3:7468014-7468033 None:intergenic 35.0%
TGCATGAATTTCTTGCAAAC+AGG - chr4_3:7468018-7468037 None:intergenic 35.0%
TCCCAACTGTCTCAATTATA+AGG + chr4_3:7468054-7468073 Msa0627380:intron 35.0%
AGACCAGAGTAGTATTTATG+TGG + chr4_3:7468295-7468314 Msa0627380:intron 35.0%
CTACCACATAAATACTACTC+TGG - chr4_3:7468301-7468320 None:intergenic 35.0%
!!! TGCATTTTGTTGGTTTTGTG+CGG + chr4_3:7468417-7468436 Msa0627380:intron 35.0%
AAGACCATGAAGAGTCAATT+TGG - chr4_3:7468764-7468783 None:intergenic 35.0%
CCAGAATGTATGCAAATTGA+TGG - chr4_3:7469022-7469041 None:intergenic 35.0%
CCATCAATTTGCATACATTC+TGG + chr4_3:7469019-7469038 Msa0627380:CDS 35.0%
!!! CGTTCTAAGATGTTTTGTTC+CGG + chr4_3:7469152-7469171 Msa0627380:intron 35.0%
!!! GTTCTAAGATGTTTTGTTCC+GGG + chr4_3:7469153-7469172 Msa0627380:intron 35.0%
! CGGGTATATGTTTTATATGC+TGG + chr4_3:7469172-7469191 Msa0627380:intron 35.0%
TATGCTGGATGTCTGTTAAA+TGG + chr4_3:7469187-7469206 Msa0627380:intron 35.0%
ATGCTGGATGTCTGTTAAAT+GGG + chr4_3:7469188-7469207 Msa0627380:intron 35.0%
! CCCTTTTTGTAGGATTTTGT+AGG + chr4_3:7469411-7469430 Msa0627380:intron 35.0%
GGTGGTTAATTTACAGGAAA+GGG - chr4_3:7469525-7469544 None:intergenic 35.0%
! CATGATCTTGTGCTTTAAGT+AGG + chr4_3:7469573-7469592 Msa0627380:intron 35.0%
GACAAATTGCTGATGAGATT+AGG - chr4_3:7469604-7469623 None:intergenic 35.0%
ATACCTAAACATATCCAGTC+CGG - chr4_3:7469656-7469675 None:intergenic 35.0%
! AGATCTTGAAACTTCTGGAA+GGG - chr4_3:7469700-7469719 None:intergenic 35.0%
AAGATCTTGAAACTTCTGGA+AGG - chr4_3:7469701-7469720 None:intergenic 35.0%
AAACAACACACTCTTCAAAC+AGG - chr4_3:7469752-7469771 None:intergenic 35.0%
!! TTGAAGAGTGTGTTGTTTCT+AGG + chr4_3:7469754-7469773 Msa0627380:intron 35.0%
CTAGGCATAGTTATCAATTG+TGG + chr4_3:7469772-7469791 Msa0627380:intron 35.0%
! TAGTTATCAATTGTGGGTTG+TGG + chr4_3:7469779-7469798 Msa0627380:intron 35.0%
TGGCTGGTAACTATTCTAAA+TGG - chr4_3:7469984-7470003 None:intergenic 35.0%
ATCATAGTTATCAACGACAG+GGG - chr4_3:7470098-7470117 None:intergenic 35.0%
TACTGAACTTTATTCGTACG+AGG - chr4_3:7470294-7470313 None:intergenic 35.0%
TTTCAGATTGAAGCGATACA+AGG + chr4_3:7470367-7470386 Msa0627380:intron 35.0%
TTCAGATTGAAGCGATACAA+GGG + chr4_3:7470368-7470387 Msa0627380:intron 35.0%
TATAAAGATAGAAGGGACAG+AGG - chr4_3:7470617-7470636 None:intergenic 35.0%
TTATCGACATCTGAACTGTT+AGG + chr4_3:7470640-7470659 Msa0627380:intron 35.0%
!! ATTACTTTTGTGTCTTCTGC+TGG + chr4_3:7470701-7470720 Msa0627380:CDS 35.0%
!! TGACTCTGAAGTTCTTAATC+AGG + chr4_3:7470724-7470743 Msa0627380:CDS 35.0%
! CTCATTTTCATTGAAACTGG+AGG + chr4_3:7470775-7470794 Msa0627380:intron 35.0%
! CATTTTCATTGAAACTGGAG+GGG + chr4_3:7470777-7470796 Msa0627380:intron 35.0%
! AAAGCATCAATGGCCAAAAA+GGG - chr4_3:7470810-7470829 None:intergenic 35.0%
!! AAAAGCATCAATGGCCAAAA+AGG - chr4_3:7470811-7470830 None:intergenic 35.0%
AAGTATCTTACTGTATGTGG+AGG - chr4_3:7470915-7470934 None:intergenic 35.0%
AGACAAATACAATGTAGGGT+CGG + chr4_3:7471455-7471474 Msa0627380:three_prime_UTR 35.0%
GTATAGTACTTTGTTCGTGA+TGG + chr4_3:7471575-7471594 Msa0627380:three_prime_UTR 35.0%
!! CCTAGATCTGAATTTTGGGT+TGG - chr4_3:7464396-7464415 None:intergenic 40.0%
CCAACCCAAAATTCAGATCT+AGG + chr4_3:7464393-7464412 Msa0627380:five_prime_UTR 40.0%
!!! CTTTTTGACGGATTCAGTAG+TGG - chr4_3:7464650-7464669 None:intergenic 40.0%
! ATGTTAACTGGTTCCGTCTA+AGG + chr4_3:7464987-7465006 Msa0627380:intron 40.0%
! TGTTAACTGGTTCCGTCTAA+GGG + chr4_3:7464988-7465007 Msa0627380:intron 40.0%
AACATCTACTCTCCCTTAGA+CGG - chr4_3:7465003-7465022 None:intergenic 40.0%
! AGAGTAGATGTTGATTGACC+TGG + chr4_3:7465011-7465030 Msa0627380:intron 40.0%
! GATGTTGATTGACCTGGATT+TGG + chr4_3:7465017-7465036 Msa0627380:intron 40.0%
!!! TTTTTGAGTGCACCAAATCC+AGG - chr4_3:7465032-7465051 None:intergenic 40.0%
AATGGGATAAGGCTTGATTG+TGG + chr4_3:7465097-7465116 Msa0627380:intron 40.0%
TCGAGTCATTGGATAAAGAC+CGG + chr4_3:7465129-7465148 Msa0627380:intron 40.0%
AAAGTCTGACGTAAGTTGTC+CGG - chr4_3:7465151-7465170 None:intergenic 40.0%
GTTGTCGGGTCTTTATCTAT+TGG + chr4_3:7465204-7465223 Msa0627380:intron 40.0%
TATCTATTGGCCGCTATTTG+CGG + chr4_3:7465217-7465236 Msa0627380:intron 40.0%
! AGGCACAGTGTGATAATGAA+TGG + chr4_3:7465415-7465434 Msa0627380:intron 40.0%
AGAGTGAAATTGTGGTAGAG+TGG + chr4_3:7465484-7465503 Msa0627380:intron 40.0%
ACCTTATGTAGTACAGCCAA+AGG - chr4_3:7465510-7465529 None:intergenic 40.0%
ACTACATAAGGTCGCTCTTA+TGG + chr4_3:7465518-7465537 Msa0627380:intron 40.0%
CTTATGGACACAGACAATCA+TGG + chr4_3:7465534-7465553 Msa0627380:intron 40.0%
TAGCCAGTGTGAGATTGTAA+TGG - chr4_3:7465560-7465579 None:intergenic 40.0%
! GGCTTGGTTGTTGTATAGTT+TGG - chr4_3:7465618-7465637 None:intergenic 40.0%
! AGTAATAGTGGGATAAGGCT+TGG - chr4_3:7465634-7465653 None:intergenic 40.0%
TCGCGCAAATAAACAGCTAA+AGG - chr4_3:7465698-7465717 None:intergenic 40.0%
AAAATTGGAGAGCAGTGAGA+CGG - chr4_3:7465813-7465832 None:intergenic 40.0%
! TTTACTTGGTCTTTGTTCCC+CGG + chr4_3:7465967-7465986 Msa0627380:intron 40.0%
GCTAAAATGACTATAGACCG+GGG - chr4_3:7465987-7466006 None:intergenic 40.0%
CTCAAACCCTGAATCTACAA+TGG - chr4_3:7466311-7466330 None:intergenic 40.0%
ATGGGCATGCTAGAAAGAAA+AGG - chr4_3:7466437-7466456 None:intergenic 40.0%
AGAACAACTGACACATGAAC+AGG + chr4_3:7466606-7466625 Msa0627380:intron 40.0%
GTAAGAGTTAAGAAAGCCCT+TGG - chr4_3:7466671-7466690 None:intergenic 40.0%
! GGTACTCTAGAAGACAGAAT+AGG - chr4_3:7466780-7466799 None:intergenic 40.0%
! GTCTCTTTTGCTTATTTGGG+GGG + chr4_3:7466860-7466879 Msa0627380:intron 40.0%
CCATTCCTAAAATTGCTTGG+GGG - chr4_3:7467283-7467302 None:intergenic 40.0%
CGTCCATTCCTAAAATTGCT+TGG - chr4_3:7467286-7467305 None:intergenic 40.0%
GTCATTTGCCAAGCAAAATC+TGG + chr4_3:7467305-7467324 Msa0627380:intron 40.0%
! GATAAGCTAGTTCTCTTGTG+TGG - chr4_3:7467415-7467434 None:intergenic 40.0%
! CACAAGAGAACTAGCTTATC+AGG + chr4_3:7467415-7467434 Msa0627380:CDS 40.0%
GTGTTCCAACAACAATGTGT+GGG - chr4_3:7467706-7467725 None:intergenic 40.0%
! ACATTGTTGTTGGAACACCT+GGG + chr4_3:7467708-7467727 Msa0627380:CDS 40.0%
AAGGTCCTTATCTCTAGTCA+GGG - chr4_3:7467744-7467763 None:intergenic 40.0%
! ACCTTGGTTTGAAGAATGTG+AGG + chr4_3:7467759-7467778 Msa0627380:CDS 40.0%
AACACGCAATTAAGGAGACA+AGG - chr4_3:7467842-7467861 None:intergenic 40.0%
CTCGACAAAACACGCAATTA+AGG - chr4_3:7467850-7467869 None:intergenic 40.0%
TCATGTCTGCAAAGGTCAAA+TGG - chr4_3:7467909-7467928 None:intergenic 40.0%
CAAAACAGCTCTTGCATCTA+CGG - chr4_3:7468332-7468351 None:intergenic 40.0%
GATGCGAAAATAACAGGAGT+TGG - chr4_3:7468372-7468391 None:intergenic 40.0%
CTACATAAATTTCCATGGGC+TGG - chr4_3:7468732-7468751 None:intergenic 40.0%
TTCAGCTTACGATTCTTCTC+TGG - chr4_3:7468899-7468918 None:intergenic 40.0%
CTGGAATGTCACAAGAAGAA+AGG + chr4_3:7469038-7469057 Msa0627380:CDS 40.0%
AGTACATAAGACTACGCATG+TGG - chr4_3:7469091-7469110 None:intergenic 40.0%
GATGTCTGTTAAATGGGACA+TGG + chr4_3:7469194-7469213 Msa0627380:intron 40.0%
TCTGTTAAATGGGACATGGT+TGG + chr4_3:7469198-7469217 Msa0627380:intron 40.0%
!! TATTGGTGTCATGCACATCA+CGG + chr4_3:7469377-7469396 Msa0627380:intron 40.0%
! TGGTCCTAATCCCTTTTTGT+AGG + chr4_3:7469401-7469420 Msa0627380:intron 40.0%
GGACTTATGTCTGTCTGATT+AGG + chr4_3:7469448-7469467 Msa0627380:intron 40.0%
GGGTGGTTAATTTACAGGAA+AGG - chr4_3:7469526-7469545 None:intergenic 40.0%
! ATCTTGTGCTTTAAGTAGGC+TGG + chr4_3:7469577-7469596 Msa0627380:intron 40.0%
CACACTCTTCAAACAGGAAA+TGG - chr4_3:7469746-7469765 None:intergenic 40.0%
TGAGCCAGTTATCAGACATA+TGG + chr4_3:7469899-7469918 Msa0627380:intron 40.0%
! TTGCTTGTCAGATCTGAAGT+GGG - chr4_3:7469936-7469955 None:intergenic 40.0%
TTTGCTTGTCAGATCTGAAG+TGG - chr4_3:7469937-7469956 None:intergenic 40.0%
ATTTATCAATGGCAGGGTAG+TGG - chr4_3:7470007-7470026 None:intergenic 40.0%
AGATAGGTATCAGCAGAATC+AGG - chr4_3:7470491-7470510 None:intergenic 40.0%
TGCTGATACCTATCTTCACA+GGG + chr4_3:7470496-7470515 Msa0627380:CDS 40.0%
AGCAATTACCCTGTGAAGAT+AGG - chr4_3:7470507-7470526 None:intergenic 40.0%
AAAAGTAATTGCAAGCCCCT+TGG - chr4_3:7470690-7470709 None:intergenic 40.0%
TAGTCTTCTCCCAAAAACTC+AGG - chr4_3:7471385-7471404 None:intergenic 40.0%
! ATGCAGGAGCATACAAAACA+TGG - chr4_3:7471417-7471436 None:intergenic 40.0%
CTGGATAAAAAAACGGATGC+AGG - chr4_3:7471433-7471452 None:intergenic 40.0%
!! AATTTGCGGCTTCTGGTTCT+TGG - chr4_3:7464431-7464450 None:intergenic 45.0%
GGTTGTTGTCTTCGAGTCAT+TGG + chr4_3:7465118-7465137 Msa0627380:intron 45.0%
TGTTGCAGATTTGGGTCCTT+TGG + chr4_3:7465276-7465295 Msa0627380:intron 45.0%
AATTGTGGTAGAGTGGCCTT+TGG + chr4_3:7465491-7465510 Msa0627380:intron 45.0%
GCCTTTGGCTGTACTACATA+AGG + chr4_3:7465506-7465525 Msa0627380:intron 45.0%
TGGCCATTACAATCTCACAC+TGG + chr4_3:7465554-7465573 Msa0627380:intron 45.0%
TTTGGTATACTGGGAAGGTG+GGG - chr4_3:7465600-7465619 None:intergenic 45.0%
GTTTGGTATACTGGGAAGGT+GGG - chr4_3:7465601-7465620 None:intergenic 45.0%
AGTTTGGTATACTGGGAAGG+TGG - chr4_3:7465602-7465621 None:intergenic 45.0%
TGTCTGAATGGCTTGAAAGC+AGG + chr4_3:7465662-7465681 Msa0627380:intron 45.0%
AATGGCTTGAAAGCAGGAAG+TGG + chr4_3:7465668-7465687 Msa0627380:intron 45.0%
AGGTTGAGCTTTCTGTGAGT+GGG - chr4_3:7465879-7465898 None:intergenic 45.0%
! TAGGTTGAGCTTTCTGTGAG+TGG - chr4_3:7465880-7465899 None:intergenic 45.0%
CTACGTTGGGATCCATAGTT+CGG + chr4_3:7466246-7466265 Msa0627380:CDS 45.0%
TACGTTGGGATCCATAGTTC+GGG + chr4_3:7466247-7466266 Msa0627380:CDS 45.0%
AGTCTCGAAATCCCGAACTA+TGG - chr4_3:7466261-7466280 None:intergenic 45.0%
TCCGAGCCATTGTAGATTCA+GGG + chr4_3:7466302-7466321 Msa0627380:CDS 45.0%
ACCCTGAATCTACAATGGCT+CGG - chr4_3:7466306-7466325 None:intergenic 45.0%
GAAGACAGAATAGGGAGCTA+AGG - chr4_3:7466771-7466790 None:intergenic 45.0%
! TCTTTTGCTTATTTGGGGGG+TGG + chr4_3:7466863-7466882 Msa0627380:intron 45.0%
! TGCATCCCCCAAGCAATTTT+AGG + chr4_3:7467275-7467294 Msa0627380:intron 45.0%
!! CCCCCAAGCAATTTTAGGAA+TGG + chr4_3:7467280-7467299 Msa0627380:intron 45.0%
TTGCCAAGCAAAATCTGGGA+TGG + chr4_3:7467310-7467329 Msa0627380:intron 45.0%
! TGCCAAGCAAAATCTGGGAT+GGG + chr4_3:7467311-7467330 Msa0627380:intron 45.0%
! TTCCCATCCCAGATTTTGCT+TGG - chr4_3:7467316-7467335 None:intergenic 45.0%
CAGCAAATTGATCCTGTTCC+TGG + chr4_3:7467365-7467384 Msa0627380:intron 45.0%
AATTGATCCTGTTCCTGGTC+AGG + chr4_3:7467370-7467389 Msa0627380:CDS 45.0%
TCTCAACTTCGTGGCAAATC+TGG - chr4_3:7467592-7467611 None:intergenic 45.0%
AGATTTGCCACGAAGTTGAG+AGG + chr4_3:7467591-7467610 Msa0627380:intron 45.0%
! CTATGGTGGTGTCAACATCA+AGG + chr4_3:7467652-7467671 Msa0627380:CDS 45.0%
GGTGTTCCAACAACAATGTG+TGG - chr4_3:7467707-7467726 None:intergenic 45.0%
! CACATTGTTGTTGGAACACC+TGG + chr4_3:7467707-7467726 Msa0627380:CDS 45.0%
TCTTGCCCTGACTAGAGATA+AGG + chr4_3:7467736-7467755 Msa0627380:CDS 45.0%
CAAGGTCCTTATCTCTAGTC+AGG - chr4_3:7467745-7467764 None:intergenic 45.0%
CTGACTAGAGATAAGGACCT+TGG + chr4_3:7467743-7467762 Msa0627380:CDS 45.0%
GCCTCACATTCTTCAAACCA+AGG - chr4_3:7467763-7467782 None:intergenic 45.0%
TGATGAGTGTGACAAGATGC+TGG + chr4_3:7467793-7467812 Msa0627380:CDS 45.0%
GACAAGATGCTGGAATCACT+TGG + chr4_3:7467803-7467822 Msa0627380:CDS 45.0%
ACGCAATTAAGGAGACAAGG+AGG - chr4_3:7467839-7467858 None:intergenic 45.0%
! GTTTTCAGCTACACTCAGCA+AGG + chr4_3:7467984-7468003 Msa0627380:intron 45.0%
CAGGAGTTGGAACAATAAGC+AGG - chr4_3:7468359-7468378 None:intergenic 45.0%
! AATCTTTTTCCTCCAGCCCA+TGG + chr4_3:7468717-7468736 Msa0627380:intron 45.0%
!! CATAAATTTCCATGGGCTGG+AGG - chr4_3:7468729-7468748 None:intergenic 45.0%
! GAGGCCAAATTGACTCTTCA+TGG + chr4_3:7468757-7468776 Msa0627380:CDS 45.0%
!! GACTCTTCATGGTCTTGTTC+AGG + chr4_3:7468768-7468787 Msa0627380:CDS 45.0%
! TCTTGTTCAGGTGCGTTTTG+TGG + chr4_3:7468780-7468799 Msa0627380:intron 45.0%
! CTTGTTCAGGTGCGTTTTGT+GGG + chr4_3:7468781-7468800 Msa0627380:intron 45.0%
CAGGAGGGTGGTTAATTTAC+AGG - chr4_3:7469531-7469550 None:intergenic 45.0%
CTATGCAAACATGCACAGGA+GGG - chr4_3:7469546-7469565 None:intergenic 45.0%
ACTATGCAAACATGCACAGG+AGG - chr4_3:7469547-7469566 None:intergenic 45.0%
TCCTGTGCATGTTTGCATAG+TGG + chr4_3:7469546-7469565 Msa0627380:intron 45.0%
! GCAAGTCTGTTGACTACTTC+CGG + chr4_3:7469634-7469653 Msa0627380:intron 45.0%
! CTTCCGGACTGGATATGTTT+AGG + chr4_3:7469650-7469669 Msa0627380:intron 45.0%
CAGGCCATATGTCTGATAAC+TGG - chr4_3:7469906-7469925 None:intergenic 45.0%
! TGCTTGTCAGATCTGAAGTG+GGG - chr4_3:7469935-7469954 None:intergenic 45.0%
TGGAGTCTAACTAGTTGCTC+TGG - chr4_3:7469964-7469983 None:intergenic 45.0%
CTGAAACAGACATGTCGTCA+TGG - chr4_3:7470353-7470372 None:intergenic 45.0%
CGATACAAGGGCTTCAAAGA+GGG + chr4_3:7470380-7470399 Msa0627380:CDS 45.0%
GATACAAGGGCTTCAAAGAG+GGG + chr4_3:7470381-7470400 Msa0627380:CDS 45.0%
! TCGTGGCAACCGATTTAGTA+GGG + chr4_3:7470417-7470436 Msa0627380:CDS 45.0%
AATCCCCCTCCCTACTAAAT+CGG - chr4_3:7470429-7470448 None:intergenic 45.0%
CTGCTGATACCTATCTTCAC+AGG + chr4_3:7470495-7470514 Msa0627380:CDS 45.0%
! GACAGAGGTCTTTTACAAGG+AGG - chr4_3:7470602-7470621 None:intergenic 45.0%
! AGGGACAGAGGTCTTTTACA+AGG - chr4_3:7470605-7470624 None:intergenic 45.0%
TCGACATCTGAACTGTTAGG+TGG + chr4_3:7470643-7470662 Msa0627380:intron 45.0%
CGACATCTGAACTGTTAGGT+GGG + chr4_3:7470644-7470663 Msa0627380:intron 45.0%
CATTGAAACTGGAGGGGAAT+AGG + chr4_3:7470783-7470802 Msa0627380:intron 45.0%
TCAGGTGCAATCTAGGTTTG+AGG + chr4_3:7470856-7470875 Msa0627380:intron 45.0%
!! GTGGAGGTGTCAATTTGTTC+AGG - chr4_3:7470899-7470918 None:intergenic 45.0%
ACAAATGATCTGTTGCCGAC+TGG + chr4_3:7471257-7471276 Msa0627380:three_prime_UTR 45.0%
! CAAATGATCTGTTGCCGACT+GGG + chr4_3:7471258-7471277 Msa0627380:three_prime_UTR 45.0%
! AAATGATCTGTTGCCGACTG+GGG + chr4_3:7471259-7471278 Msa0627380:three_prime_UTR 45.0%
ACAACAAATCCATCCCCAGT+CGG - chr4_3:7471275-7471294 None:intergenic 45.0%
! TCGAATGGCTCCTGAGTTTT+TGG + chr4_3:7471372-7471391 Msa0627380:three_prime_UTR 45.0%
! CGAATGGCTCCTGAGTTTTT+GGG + chr4_3:7471373-7471392 Msa0627380:three_prime_UTR 45.0%
CGTGAAGAATTTGCGGCTTC+TGG - chr4_3:7464438-7464457 None:intergenic 50.0%
TCACTGCAGTCCGCAAATAG+CGG - chr4_3:7465230-7465249 None:intergenic 50.0%
AGACACACACACTCACTCAC+AGG - chr4_3:7466042-7466061 None:intergenic 50.0%
! GGAGAAGCTCTGGTTTCAAC+AGG - chr4_3:7466285-7466304 None:intergenic 50.0%
CTCCGAGCCATTGTAGATTC+AGG + chr4_3:7466301-7466320 Msa0627380:CDS 50.0%
GGGTTTGAGCATCCTTCAGA+AGG + chr4_3:7466322-7466341 Msa0627380:CDS 50.0%
TGCTGAACCTCTCAACTTCG+TGG - chr4_3:7467601-7467620 None:intergenic 50.0%
GAGTGCCCACACATTGTTGT+TGG + chr4_3:7467698-7467717 Msa0627380:CDS 50.0%
! TTGTTGTTGGAACACCTGGG+AGG + chr4_3:7467711-7467730 Msa0627380:CDS 50.0%
GCCACTATGCAAACATGCAC+AGG - chr4_3:7469550-7469569 None:intergenic 50.0%
! TCTGTTGACTACTTCCGGAC+TGG + chr4_3:7469639-7469658 Msa0627380:intron 50.0%
! ACTGGCTCAACTAGCCATCT+TGG - chr4_3:7469888-7469907 None:intergenic 50.0%
! TATCAATGGCAGGGTAGTGG+TGG - chr4_3:7470004-7470023 None:intergenic 50.0%
AGTTATCAACGACAGGGGAG+TGG - chr4_3:7470093-7470112 None:intergenic 50.0%
GCGATACAAGGGCTTCAAAG+AGG + chr4_3:7470379-7470398 Msa0627380:CDS 50.0%
! CTCGTGGCAACCGATTTAGT+AGG + chr4_3:7470416-7470435 Msa0627380:CDS 50.0%
! TGGCAACCGATTTAGTAGGG+AGG + chr4_3:7470420-7470439 Msa0627380:CDS 50.0%
! GGCAACCGATTTAGTAGGGA+GGG + chr4_3:7470421-7470440 Msa0627380:CDS 50.0%
! GCAACCGATTTAGTAGGGAG+GGG + chr4_3:7470422-7470441 Msa0627380:CDS 50.0%
! CAACCGATTTAGTAGGGAGG+GGG + chr4_3:7470423-7470442 Msa0627380:CDS 50.0%
AACTGTTAGGTGGGTAGAGC+TGG + chr4_3:7470653-7470672 Msa0627380:intron 50.0%
GTGGGTAGAGCTGGTAGATT+TGG + chr4_3:7470662-7470681 Msa0627380:CDS 50.0%
AGCTGGTAGATTTGGCACCA+AGG + chr4_3:7470670-7470689 Msa0627380:CDS 50.0%
GCTGGTAGATTTGGCACCAA+GGG + chr4_3:7470671-7470690 Msa0627380:CDS 50.0%
CTGGTAGATTTGGCACCAAG+GGG + chr4_3:7470672-7470691 Msa0627380:CDS 50.0%
! GAGGGGAATAGGACCCTTTT+TGG + chr4_3:7470794-7470813 Msa0627380:intron 50.0%
GGCTCGAGTGCATATTCCAT+TGG + chr4_3:7471637-7471656 Msa0627380:three_prime_UTR 50.0%
!! TTGCGGCTTCTGGTTCTTGG+AGG - chr4_3:7464428-7464447 None:intergenic 55.0%
TTGTTGTGCAGGGGCTACGT+TGG + chr4_3:7466232-7466251 Msa0627380:intron 55.0%
TGTTGTGCAGGGGCTACGTT+GGG + chr4_3:7466233-7466252 Msa0627380:intron 55.0%
! ACAATGGCTCGGAGAAGCTC+TGG - chr4_3:7466295-7466314 None:intergenic 55.0%
! ACAAGTGCTGCAACCTGACC+AGG - chr4_3:7467386-7467405 None:intergenic 55.0%
! GGTGTCATGCACATCACGGT+TGG + chr4_3:7469381-7469400 Msa0627380:intron 55.0%
TGCAAACATGCACAGGAGGG+TGG - chr4_3:7469543-7469562 None:intergenic 55.0%
! GTGGGTTGTGGCACAGTAAC+TGG + chr4_3:7469791-7469810 Msa0627380:intron 55.0%
! ATCTGAAGTGGGGCTTGGAC+AGG - chr4_3:7469925-7469944 None:intergenic 55.0%
! GTCAGATCTGAAGTGGGGCT+TGG - chr4_3:7469930-7469949 None:intergenic 55.0%
GGGGAAGCAGAGAATTCTCG+TGG + chr4_3:7470400-7470419 Msa0627380:CDS 55.0%
GTATACTGGGAAGGTGGGGC+AGG - chr4_3:7465596-7465615 None:intergenic 60.0%
GCTGCAACCTGACCAGGAAC+AGG - chr4_3:7467380-7467399 None:intergenic 60.0%
GTCAGGGCAAGAATCCTCCC+AGG - chr4_3:7467728-7467747 None:intergenic 60.0%
! AATGGCAGGGTAGTGGTGGC+TGG - chr4_3:7470000-7470019 None:intergenic 60.0%
! GATCTGTTGCCGACTGGGGA+TGG + chr4_3:7471263-7471282 Msa0627380:three_prime_UTR 60.0%
AACGACAGGGGAGTGGTGCC+TGG - chr4_3:7470086-7470105 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 7464339 7471720 7464339 ID=Msa0627380;Name=Msa0627380
chr4_3 mRNA 7464339 7471720 7464339 ID=Msa0627380-mRNA-1;Parent=Msa0627380;Name=Msa0627380-mRNA-1;_AED=0.19;_eAED=0.19;_QI=138|0.81|0.75|1|1|1|12|495|381
chr4_3 exon 7464339 7464466 7464339 ID=Msa0627380-mRNA-1:exon:2181;Parent=Msa0627380-mRNA-1
chr4_3 exon 7464549 7464668 7464549 ID=Msa0627380-mRNA-1:exon:2182;Parent=Msa0627380-mRNA-1
chr4_3 exon 7466243 7466378 7466243 ID=Msa0627380-mRNA-1:exon:2183;Parent=Msa0627380-mRNA-1
chr4_3 exon 7467368 7467436 7467368 ID=Msa0627380-mRNA-1:exon:2184;Parent=Msa0627380-mRNA-1
chr4_3 exon 7467593 7467824 7467593 ID=Msa0627380-mRNA-1:exon:2185;Parent=Msa0627380-mRNA-1
chr4_3 exon 7467923 7467975 7467923 ID=Msa0627380-mRNA-1:exon:2186;Parent=Msa0627380-mRNA-1
chr4_3 exon 7468733 7468789 7468733 ID=Msa0627380-mRNA-1:exon:2187;Parent=Msa0627380-mRNA-1
chr4_3 exon 7468875 7469059 7468875 ID=Msa0627380-mRNA-1:exon:2188;Parent=Msa0627380-mRNA-1
chr4_3 exon 7470373 7470517 7470373 ID=Msa0627380-mRNA-1:exon:2189;Parent=Msa0627380-mRNA-1
chr4_3 exon 7470662 7470745 7470662 ID=Msa0627380-mRNA-1:exon:2190;Parent=Msa0627380-mRNA-1
chr4_3 exon 7470860 7470923 7470860 ID=Msa0627380-mRNA-1:exon:2191;Parent=Msa0627380-mRNA-1
chr4_3 exon 7471215 7471720 7471215 ID=Msa0627380-mRNA-1:exon:2192;Parent=Msa0627380-mRNA-1
chr4_3 five_prime_UTR 7464339 7464466 7464339 ID=Msa0627380-mRNA-1:five_prime_utr;Parent=Msa0627380-mRNA-1
chr4_3 five_prime_UTR 7464549 7464558 7464549 ID=Msa0627380-mRNA-1:five_prime_utr;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7464559 7464668 7464559 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7466243 7466378 7466243 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7467368 7467436 7467368 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7467593 7467824 7467593 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7467923 7467975 7467923 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7468733 7468789 7468733 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7468875 7469059 7468875 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7470373 7470517 7470373 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7470662 7470745 7470662 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7470860 7470923 7470860 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 CDS 7471215 7471225 7471215 ID=Msa0627380-mRNA-1:cds;Parent=Msa0627380-mRNA-1
chr4_3 three_prime_UTR 7471226 7471720 7471226 ID=Msa0627380-mRNA-1:three_prime_utr;Parent=Msa0627380-mRNA-1
Gene Sequence

>Msa0627380

ATGGGTGAATTGAAAGATACTGAAGTTTACGAGGAAGAGCTTATCGATTACGAAGAAGAAGATGAAAAAGCTCTTGATTCTACTAAATCCACTACTGAATCCGTCAAAAAGGGCTACGTTGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTCCGAGCCATTGTAGATTCAGGGTTTGAGCATCCTTCAGAAGGCAAGTTTTACTATATGCTGCCATTACATGATTCACAAATTGATCCTGTTCCTGGTCAGGTTGCAGCACTTGTTCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGCCACGAAGTTGAGAGGTTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGATTTGCTCAAGAATGAGTGCCCACACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGATAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGAGAAAAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAACCCATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAATTACAAGAGCCAGAGAAGAATCGTAAGCTGAATGATCTTCTTGATGCTCTTGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCAGAGCAGCAGAATTGAATAAGTTGCTTGTTGAGTGTAACTTCCCATCAATTTGCATACATTCTGGAATGTCACAAGAAGAAAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAGAGAATTCTCGTGGCAACCGATTTAGTAGGGAGGGGGATTGATATAGAGCGTGTCAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACCTATCTTCACAGGGTGGGTAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTGCTGGTGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACATGCCTAATTGA
Protein sequence

>Msa0627380

MGELKDTEVYEEELIDYEEEDEKALDSTKSTTESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKFYYMLPLHDSQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN*