Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586860 | AES86511.1 | 98.050 | 564 | 11 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586860 | sp|P0C897|Y3264_ARATH | 46.667 | 525 | 239 | 8 | 9 | 528 | 9 | 497 | 6.59e-163 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586860 | G7JFQ2 | 98.050 | 564 | 11 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0483630 | Msa0586860 | 0.809176 | 2.153733e-50 | -8.615850e-47 |
| Msa0586860 | Msa0626710 | 0.942381 | 7.956393e-102 | -8.615850e-47 |
| Msa0586860 | Msa0868000 | 0.814476 | 1.511390e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586860 | MtrunA17_Chr4g0002861 | 98.050 | 564 | 11 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1132 |
| Msa0586860 | MtrunA17_Chr4g0002901 | 89.785 | 558 | 55 | 2 | 1 | 557 | 1 | 557 | 0.0 | 1001 |
| Msa0586860 | MtrunA17_Chr4g0002911 | 73.118 | 558 | 146 | 4 | 1 | 557 | 1 | 555 | 0.0 | 800 |
| Msa0586860 | MtrunA17_Chr7g0220521 | 59.099 | 555 | 215 | 5 | 1 | 554 | 1 | 544 | 0.0 | 672 |
| Msa0586860 | MtrunA17_Chr2g0300311 | 31.020 | 245 | 140 | 7 | 21 | 254 | 30 | 256 | 5.25e-20 | 93.2 |
| Msa0586860 | MtrunA17_Chr2g0297831 | 31.667 | 240 | 144 | 6 | 21 | 254 | 47 | 272 | 3.90e-19 | 90.9 |
| Msa0586860 | MtrunA17_Chr5g0439641 | 28.774 | 212 | 134 | 6 | 357 | 557 | 246 | 451 | 5.59e-18 | 86.7 |
| Msa0586860 | MtrunA17_Chr5g0439641 | 27.419 | 248 | 150 | 10 | 18 | 246 | 4 | 240 | 3.38e-13 | 72.0 |
| Msa0586860 | MtrunA17_Chr5g0439661 | 32.386 | 176 | 106 | 6 | 43 | 214 | 29 | 195 | 8.71e-18 | 82.0 |
| Msa0586860 | MtrunA17_Chr7g0265891 | 29.493 | 217 | 140 | 5 | 38 | 252 | 47 | 252 | 4.53e-17 | 84.0 |
| Msa0586860 | MtrunA17_Chr5g0439721 | 33.333 | 189 | 117 | 6 | 373 | 559 | 257 | 438 | 2.21e-16 | 82.0 |
| Msa0586860 | MtrunA17_Chr5g0439721 | 26.316 | 247 | 141 | 8 | 18 | 246 | 4 | 227 | 7.04e-14 | 73.9 |
| Msa0586860 | MtrunA17_Chr5g0440401 | 28.641 | 206 | 136 | 6 | 354 | 557 | 22 | 218 | 1.59e-15 | 75.9 |
| Msa0586860 | MtrunA17_Chr2g0296801 | 29.609 | 179 | 120 | 5 | 377 | 552 | 175 | 350 | 1.79e-15 | 78.2 |
| Msa0586860 | MtrunA17_Chr5g0401791 | 30.058 | 173 | 106 | 7 | 21 | 187 | 78 | 241 | 4.78e-15 | 78.2 |
| Msa0586860 | MtrunA17_Chr6g0452601 | 26.347 | 167 | 106 | 2 | 42 | 208 | 25 | 174 | 6.74e-15 | 77.0 |
| Msa0586860 | MtrunA17_Chr6g0452601 | 25.989 | 177 | 130 | 1 | 375 | 550 | 242 | 418 | 5.97e-11 | 64.7 |
| Msa0586860 | MtrunA17_Chr8g0335061 | 32.934 | 167 | 96 | 6 | 42 | 204 | 27 | 181 | 1.55e-14 | 75.9 |
| Msa0586860 | MtrunA17_Chr8g0335061 | 30.345 | 145 | 98 | 3 | 395 | 539 | 288 | 429 | 1.56e-12 | 69.7 |
| Msa0586860 | MtrunA17_Chr6g0452161 | 26.190 | 168 | 108 | 2 | 40 | 207 | 23 | 174 | 6.45e-14 | 73.9 |
| Msa0586860 | MtrunA17_Chr5g0439681 | 28.571 | 182 | 121 | 5 | 379 | 557 | 137 | 312 | 7.59e-14 | 72.8 |
| Msa0586860 | MtrunA17_Chr6g0452551 | 25.309 | 162 | 104 | 2 | 42 | 203 | 25 | 169 | 8.92e-14 | 73.6 |
| Msa0586860 | MtrunA17_Chr7g0238251 | 24.547 | 497 | 266 | 19 | 59 | 527 | 49 | 464 | 9.66e-14 | 73.9 |
| Msa0586860 | MtrunA17_Chr8g0334971 | 31.034 | 145 | 97 | 3 | 395 | 539 | 289 | 430 | 2.02e-13 | 72.4 |
| Msa0586860 | MtrunA17_Chr8g0334971 | 26.667 | 225 | 146 | 7 | 42 | 258 | 27 | 240 | 1.07e-12 | 70.5 |
| Msa0586860 | MtrunA17_Chr8g0335011 | 30.588 | 170 | 105 | 4 | 42 | 198 | 36 | 205 | 3.06e-13 | 72.4 |
| Msa0586860 | MtrunA17_Chr8g0335011 | 30.464 | 151 | 96 | 4 | 395 | 540 | 339 | 485 | 4.38e-12 | 68.6 |
| Msa0586860 | MtrunA17_Chr8g0334951 | 32.075 | 159 | 93 | 6 | 42 | 196 | 29 | 176 | 3.30e-13 | 71.6 |
| Msa0586860 | MtrunA17_Chr7g0238511 | 28.191 | 188 | 130 | 4 | 372 | 555 | 252 | 438 | 3.38e-13 | 72.0 |
| Msa0586860 | MtrunA17_Chr6g0452561 | 28.000 | 200 | 133 | 3 | 358 | 550 | 230 | 425 | 4.43e-13 | 71.2 |
| Msa0586860 | MtrunA17_Chr6g0452561 | 25.789 | 190 | 124 | 6 | 20 | 207 | 5 | 179 | 2.80e-11 | 65.9 |
| Msa0586860 | MtrunA17_Chr6g0452501 | 24.691 | 162 | 105 | 2 | 42 | 203 | 25 | 169 | 4.74e-13 | 71.2 |
| Msa0586860 | MtrunA17_Chr6g0452501 | 28.409 | 176 | 123 | 3 | 377 | 550 | 236 | 410 | 5.92e-11 | 64.7 |
| Msa0586860 | MtrunA17_Chr6g0452531 | 24.873 | 197 | 127 | 4 | 22 | 218 | 7 | 182 | 4.89e-13 | 71.2 |
| Msa0586860 | MtrunA17_Chr6g0452531 | 27.933 | 179 | 128 | 1 | 373 | 550 | 232 | 410 | 6.21e-12 | 67.8 |
| Msa0586860 | MtrunA17_Chr6g0452611 | 25.309 | 162 | 106 | 3 | 42 | 203 | 24 | 170 | 7.59e-13 | 70.5 |
| Msa0586860 | MtrunA17_Chr7g0238131 | 28.877 | 187 | 128 | 4 | 373 | 555 | 232 | 417 | 7.87e-13 | 70.5 |
| Msa0586860 | MtrunA17_Chr7g0238051 | 28.477 | 151 | 106 | 2 | 406 | 555 | 218 | 367 | 9.20e-13 | 70.1 |
| Msa0586860 | MtrunA17_Chr6g0457371 | 26.519 | 181 | 114 | 5 | 43 | 222 | 26 | 188 | 1.01e-12 | 70.1 |
| Msa0586860 | MtrunA17_Chr7g0238231 | 26.596 | 188 | 133 | 4 | 372 | 555 | 306 | 492 | 1.22e-12 | 70.5 |
| Msa0586860 | MtrunA17_Chr3g0118601 | 31.429 | 175 | 115 | 3 | 379 | 550 | 277 | 449 | 1.60e-12 | 69.7 |
| Msa0586860 | MtrunA17_Chr8g0335071 | 28.846 | 156 | 107 | 4 | 395 | 550 | 304 | 455 | 3.42e-12 | 68.9 |
| Msa0586860 | MtrunA17_Chr8g0334911 | 31.250 | 160 | 96 | 6 | 42 | 198 | 28 | 176 | 6.23e-12 | 67.8 |
| Msa0586860 | MtrunA17_Chr7g0242071 | 31.847 | 157 | 99 | 3 | 41 | 196 | 28 | 177 | 1.70e-11 | 67.0 |
| Msa0586860 | MtrunA17_Chr7g0218171 | 27.586 | 174 | 125 | 1 | 378 | 550 | 124 | 297 | 2.46e-11 | 65.1 |
| Msa0586860 | MtrunA17_Chr8g0352491 | 28.125 | 160 | 90 | 4 | 411 | 551 | 32 | 185 | 6.45e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586860 | AT3G02645.1 | 46.667 | 525 | 239 | 8 | 9 | 528 | 9 | 497 | 6.70e-164 | 477 |
| Msa0586860 | AT3G50180.1 | 32.922 | 243 | 144 | 11 | 19 | 253 | 153 | 384 | 5.00e-27 | 115 |
| Msa0586860 | AT3G50180.1 | 31.148 | 183 | 116 | 5 | 377 | 552 | 403 | 582 | 8.00e-14 | 74.7 |
| Msa0586860 | AT3G50120.1 | 36.364 | 187 | 108 | 7 | 21 | 204 | 80 | 258 | 4.34e-25 | 109 |
| Msa0586860 | AT3G50120.1 | 29.050 | 179 | 121 | 3 | 377 | 552 | 350 | 525 | 8.20e-13 | 71.2 |
| Msa0586860 | AT3G50170.2 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 6.94e-24 | 104 |
| Msa0586860 | AT3G50170.1 | 33.333 | 186 | 115 | 6 | 21 | 204 | 90 | 268 | 1.82e-23 | 104 |
| Msa0586860 | AT3G50170.1 | 30.168 | 179 | 119 | 3 | 377 | 552 | 358 | 533 | 2.74e-14 | 76.3 |
| Msa0586860 | AT3G50130.1 | 32.979 | 188 | 115 | 7 | 21 | 205 | 116 | 295 | 2.15e-21 | 98.6 |
| Msa0586860 | AT3G50140.2 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 9.20e-21 | 95.5 |
| Msa0586860 | AT3G50140.1 | 32.258 | 186 | 117 | 6 | 21 | 204 | 90 | 268 | 1.91e-20 | 95.5 |
| Msa0586860 | AT3G50140.1 | 26.154 | 195 | 138 | 3 | 362 | 551 | 339 | 532 | 3.26e-12 | 69.7 |
| Msa0586860 | AT3G50150.2 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.44e-19 | 92.0 |
| Msa0586860 | AT3G50150.1 | 26.493 | 268 | 175 | 9 | 21 | 274 | 67 | 326 | 1.59e-19 | 92.4 |
| Msa0586860 | AT3G50150.1 | 29.208 | 202 | 137 | 4 | 355 | 552 | 304 | 503 | 4.72e-16 | 81.6 |
| Msa0586860 | AT3G50160.1 | 26.289 | 194 | 122 | 5 | 41 | 228 | 103 | 281 | 4.04e-17 | 84.7 |
| Msa0586860 | AT3G50160.1 | 29.319 | 191 | 128 | 4 | 364 | 552 | 310 | 495 | 4.65e-14 | 75.1 |
| Msa0586860 | AT5G11290.2 | 32.903 | 155 | 90 | 3 | 41 | 193 | 32 | 174 | 4.75e-17 | 84.0 |
| Msa0586860 | AT4G31980.1 | 32.278 | 158 | 93 | 4 | 42 | 197 | 293 | 438 | 5.76e-17 | 85.1 |
| Msa0586860 | AT3G47210.1 | 32.317 | 164 | 102 | 3 | 35 | 198 | 86 | 240 | 1.12e-15 | 80.1 |
| Msa0586860 | AT3G50190.4 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 1.99e-15 | 78.6 |
| Msa0586860 | AT3G50190.3 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 1.99e-15 | 78.6 |
| Msa0586860 | AT3G50190.2 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 2.04e-15 | 78.6 |
| Msa0586860 | AT3G50190.1 | 30.233 | 172 | 111 | 6 | 21 | 190 | 73 | 237 | 3.19e-15 | 79.0 |
| Msa0586860 | AT2G36430.1 | 26.009 | 223 | 146 | 4 | 38 | 255 | 41 | 249 | 1.30e-14 | 76.6 |
| Msa0586860 | AT3G47250.3 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 3.10e-14 | 75.9 |
| Msa0586860 | AT3G47250.2 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 3.10e-14 | 75.9 |
| Msa0586860 | AT3G47250.1 | 25.000 | 292 | 177 | 6 | 22 | 299 | 36 | 299 | 3.10e-14 | 75.9 |
| Msa0586860 | AT5G22560.1 | 26.692 | 266 | 132 | 10 | 22 | 252 | 24 | 261 | 2.31e-13 | 73.2 |
| Msa0586860 | AT3G47200.1 | 29.268 | 164 | 103 | 3 | 35 | 196 | 39 | 191 | 6.39e-13 | 71.6 |
| Msa0586860 | AT3G47200.2 | 29.268 | 164 | 103 | 3 | 35 | 196 | 39 | 191 | 6.39e-13 | 71.6 |
| Msa0586860 | AT5G22550.2 | 25.000 | 236 | 139 | 7 | 32 | 252 | 34 | 246 | 1.39e-12 | 70.5 |
| Msa0586860 | AT5G22550.2 | 28.889 | 180 | 127 | 1 | 377 | 555 | 308 | 487 | 2.15e-12 | 70.1 |
| Msa0586860 | AT5G22550.1 | 28.889 | 180 | 127 | 1 | 377 | 555 | 259 | 438 | 2.01e-12 | 69.7 |
| Msa0586860 | AT5G22540.1 | 28.108 | 185 | 116 | 4 | 22 | 198 | 6 | 181 | 3.37e-11 | 65.9 |
Find 75 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGTCCTTACCATTAT+TGG | 0.181399 | 4_2:-8339853 | Msa0586860:CDS |
| AGCAATCATTCAATGAAATT+TGG | 0.198118 | 4_2:-8339184 | Msa0586860:CDS |
| GCAAAGATTCTAAGAGAAAA+AGG | 0.234685 | 4_2:-8338675 | Msa0586860:CDS |
| TCATTTCCTGTTTCTAATTT+AGG | 0.239490 | 4_2:+8339293 | None:intergenic |
| CAATGTGCCAAAGCTTCTTA+TGG | 0.260296 | 4_2:-8339912 | Msa0586860:CDS |
| TATACTTGTAGTCGCTTCTT+TGG | 0.274811 | 4_2:-8338396 | Msa0586860:CDS |
| CAACCTTTGATGAACTTAGA+TGG | 0.280233 | 4_2:-8340006 | Msa0586860:CDS |
| CCTCTTCAAATTCTTCTTCA+AGG | 0.288017 | 4_2:+8339963 | None:intergenic |
| TGCAAGAAGGTGCAACAAAA+AGG | 0.295985 | 4_2:-8339604 | Msa0586860:CDS |
| TTACCTTCCTATAATTGGTT+TGG | 0.311845 | 4_2:-8338820 | Msa0586860:CDS |
| CTTTGCATTTCATAGAGTTC+TGG | 0.331900 | 4_2:+8339827 | None:intergenic |
| ATCAAGCAAATGTGCACTTT+CGG | 0.361310 | 4_2:+8339337 | None:intergenic |
| TTAACATCCAAACCAATTAT+AGG | 0.368618 | 4_2:+8338813 | None:intergenic |
| TTTATGAAGTCTTATGTGTT+TGG | 0.373276 | 4_2:-8338495 | Msa0586860:CDS |
| GTTAAAGAACTTGTGAAGTC+AGG | 0.374433 | 4_2:-8338909 | Msa0586860:CDS |
| CTCTTCAAATTCTTCTTCAA+GGG | 0.387908 | 4_2:+8339964 | None:intergenic |
| GACCCATAAAATCTCTCAAA+AGG | 0.390635 | 4_2:-8339136 | Msa0586860:CDS |
| TTTGTTCATACTTTGTCAAT+TGG | 0.390968 | 4_2:+8339735 | None:intergenic |
| CTTGGTATGCTTCCATTAGT+AGG | 0.393361 | 4_2:+8338873 | None:intergenic |
| CGTTCAAATCTAAGAATTTG+TGG | 0.397038 | 4_2:+8339696 | None:intergenic |
| TGTTGTGGAACGTAAGAATC+TGG | 0.408953 | 4_2:+8339881 | None:intergenic |
| AAGTATGAACAAAGGGTTAG+AGG | 0.411014 | 4_2:-8339725 | Msa0586860:CDS |
| TATAATTCCATTCATCAATT+CGG | 0.422039 | 4_2:+8338713 | None:intergenic |
| AGTCTTATGTGTTTGGTTCA+TGG | 0.424816 | 4_2:-8338488 | Msa0586860:CDS |
| ATTGTGCCTAAATTAGAAAC+AGG | 0.430168 | 4_2:-8339299 | Msa0586860:CDS |
| AGAGTTCTGGTCTCCAATAA+TGG | 0.437374 | 4_2:+8339840 | None:intergenic |
| AAAATCATAAGCAATCTTCC+AGG | 0.447323 | 4_2:-8339068 | Msa0586860:CDS |
| TCACTAGCCATAAGAAGCTT+TGG | 0.455256 | 4_2:+8339905 | None:intergenic |
| GTTCCACAACAAGTTGCAAT+TGG | 0.472042 | 4_2:-8339869 | Msa0586860:CDS |
| CGTGAAGATGAAAATTCAAA+AGG | 0.480641 | 4_2:-8339224 | Msa0586860:CDS |
| CAAATTTATGCAATGCAAGA+AGG | 0.480891 | 4_2:-8339617 | Msa0586860:CDS |
| TATGAATCATCGGTTGGATC+GGG | 0.482387 | 4_2:-8338759 | Msa0586860:CDS |
| CACAAATTCTTAGATTTGAA+CGG | 0.491137 | 4_2:-8339695 | Msa0586860:CDS |
| AAGTGCTTGTAAAGTTTCCA+TGG | 0.492984 | 4_2:-8339091 | Msa0586860:CDS |
| GGACCAATTGCAACTTGTTG+TGG | 0.498583 | 4_2:+8339866 | None:intergenic |
| CTTTCGGAGACTTTAATGCT+TGG | 0.499690 | 4_2:+8339353 | None:intergenic |
| ATTGACAAAGTATGAACAAA+GGG | 0.500245 | 4_2:-8339732 | Msa0586860:CDS |
| GCAAGTCATTGAGATTATCA+AGG | 0.501646 | 4_2:-8338593 | Msa0586860:CDS |
| AACTTTACAAGCACTTTCAA+AGG | 0.504638 | 4_2:+8339098 | None:intergenic |
| ATCGGTTGGATCGGGACCAT+TGG | 0.507267 | 4_2:-8338751 | Msa0586860:CDS |
| TTTGCATCGAAATTAATACT+TGG | 0.508983 | 4_2:+8338855 | None:intergenic |
| TTTAGAATTATATGACATAG+TGG | 0.512393 | 4_2:+8340030 | None:intergenic |
| TTCACAAGTTCTTTAACAGA+AGG | 0.512475 | 4_2:+8338915 | None:intergenic |
| AACCTTTGATGAACTTAGAT+GGG | 0.512620 | 4_2:-8340005 | Msa0586860:CDS |
| TCAAAGGTGGCTTGTTAACA+AGG | 0.514604 | 4_2:+8338955 | None:intergenic |
| AACTCTTCAATCATCTTGAA+AGG | 0.518028 | 4_2:+8339377 | None:intergenic |
| GAAGAATTTGAAGAGGAAGA+TGG | 0.518706 | 4_2:-8339956 | Msa0586860:CDS |
| ACCCATAAAATCTCTCAAAA+GGG | 0.523730 | 4_2:-8339135 | Msa0586860:CDS |
| CTTGGTTGCATATGAATCAT+CGG | 0.528032 | 4_2:-8338769 | Msa0586860:CDS |
| CAAGTCATTGAGATTATCAA+GGG | 0.529827 | 4_2:-8338592 | Msa0586860:CDS |
| ATATGAATCATCGGTTGGAT+CGG | 0.532054 | 4_2:-8338760 | Msa0586860:CDS |
| GTTGCATATGAATCATCGGT+TGG | 0.535467 | 4_2:-8338765 | Msa0586860:CDS |
| CGTTACACCGAATTGATGAA+TGG | 0.539855 | 4_2:-8338720 | Msa0586860:CDS |
| TTAAAGAACTTGTGAAGTCA+GGG | 0.544355 | 4_2:-8338908 | Msa0586860:CDS |
| ATAAAGAAGTTGCTGATATG+TGG | 0.544942 | 4_2:-8338626 | Msa0586860:CDS |
| ATAGTGATTTCTTCAATCAA+AGG | 0.550729 | 4_2:+8338939 | None:intergenic |
| TCACATTTAGTTGACTATGC+TGG | 0.552649 | 4_2:-8339563 | Msa0586860:CDS |
| TGTTGAGATTCAACAAGAAG+AGG | 0.558169 | 4_2:-8339258 | Msa0586860:CDS |
| CACCCATCTAAGTTCATCAA+AGG | 0.560565 | 4_2:+8340003 | None:intergenic |
| TCTGGTCTCCAATAATGGTA+AGG | 0.564617 | 4_2:+8339845 | None:intergenic |
| CCTTGAAGAAGAATTTGAAG+AGG | 0.574533 | 4_2:-8339963 | Msa0586860:CDS |
| GTGATTTCTTCAATCAAAGG+TGG | 0.576916 | 4_2:+8338942 | None:intergenic |
| GAAGTTGCTGATATGTGGAA+TGG | 0.576981 | 4_2:-8338621 | Msa0586860:CDS |
| ATTCTTTCAAAACTTAACAA+AGG | 0.581545 | 4_2:-8339158 | Msa0586860:CDS |
| CATCCAAACCAATTATAGGA+AGG | 0.589371 | 4_2:+8338817 | None:intergenic |
| ACTTTGTCAATTGGTCAACA+AGG | 0.606799 | 4_2:+8339744 | None:intergenic |
| GTGTAACGCGTTATAACCAA+TGG | 0.610442 | 4_2:+8338735 | None:intergenic |
| AATTGACAAAGTATGAACAA+AGG | 0.638794 | 4_2:-8339733 | Msa0586860:CDS |
| AGATTTGAACGGAGAAACGA+TGG | 0.639181 | 4_2:-8339684 | Msa0586860:CDS |
| GAATGGAATTATAGACTCGG+AGG | 0.673937 | 4_2:-8338703 | Msa0586860:CDS |
| ATCATAAGCAATCTTCCAGG+AGG | 0.678359 | 4_2:-8339065 | Msa0586860:CDS |
| CAAAGGTGGCTTGTTAACAA+GGG | 0.680704 | 4_2:+8338956 | None:intergenic |
| TGAACGGAGAAACGATGGTG+TGG | 0.683030 | 4_2:-8339679 | Msa0586860:CDS |
| TAAAGAACTTGTGAAGTCAG+GGG | 0.688848 | 4_2:-8338907 | Msa0586860:CDS |
| GATGAATGGAATTATAGACT+CGG | 0.696616 | 4_2:-8338706 | Msa0586860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCTCAAAACAAATAA+CGG | + | chr4_2:8338941-8338960 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | - | chr4_2:8339406-8339425 | Msa0586860:CDS | 15.0% |
| !!! | AATTTTCTCAAAACAAATAA+CGG | + | chr4_2:8338941-8338960 | None:intergenic | 15.0% |
| !!! | TTATTTTTCTCTAAAGAAAA+AGG | - | chr4_2:8339406-8339425 | Msa0586860:CDS | 15.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | + | chr4_2:8338393-8338412 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+TGG | - | chr4_2:8339001-8339020 | Msa0586860:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | - | chr4_2:8339262-8339281 | Msa0586860:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | + | chr4_2:8339397-8339416 | None:intergenic | 20.0% |
| !! | TATAATTCCATTCATCAATT+CGG | + | chr4_2:8339710-8339729 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | - | chr4_2:8339888-8339907 | Msa0586860:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | - | chr4_2:8339978-8339997 | Msa0586860:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | - | chr4_2:8339979-8339998 | Msa0586860:CDS | 20.0% |
| !!! | TTTAGAATTATATGACATAG+TGG | + | chr4_2:8338393-8338412 | None:intergenic | 20.0% |
| !!! | ATGTTGATTTTCATGTTTAT+TGG | - | chr4_2:8339001-8339020 | Msa0586860:CDS | 20.0% |
| !! | ATTCTTTCAAAACTTAACAA+AGG | - | chr4_2:8339262-8339281 | Msa0586860:CDS | 20.0% |
| !! | GAGAAAAATAAAGATTCAAT+AGG | + | chr4_2:8339397-8339416 | None:intergenic | 20.0% |
| !! | TATAATTCCATTCATCAATT+CGG | + | chr4_2:8339710-8339729 | None:intergenic | 20.0% |
| !!! | GTTTTATAATAGTAGAATGA+AGG | - | chr4_2:8339888-8339907 | Msa0586860:CDS | 20.0% |
| !!! | TATTTTCTTGTTGTTTTTGA+TGG | - | chr4_2:8339978-8339997 | Msa0586860:CDS | 20.0% |
| !!! | ATTTTCTTGTTGTTTTTGAT+GGG | - | chr4_2:8339979-8339998 | Msa0586860:CDS | 20.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | + | chr4_2:8338633-8338652 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | + | chr4_2:8338688-8338707 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | - | chr4_2:8338687-8338706 | Msa0586860:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | - | chr4_2:8338688-8338707 | Msa0586860:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | - | chr4_2:8338725-8338744 | Msa0586860:CDS | 25.0% |
| !!! | TCATTTCCTGTTTCTAATTT+AGG | + | chr4_2:8339130-8339149 | None:intergenic | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | - | chr4_2:8339236-8339255 | Msa0586860:CDS | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | + | chr4_2:8339484-8339503 | None:intergenic | 25.0% |
| ! | TTTGCATCGAAATTAATACT+TGG | + | chr4_2:8339568-8339587 | None:intergenic | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | - | chr4_2:8339595-8339614 | Msa0586860:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | + | chr4_2:8339610-8339629 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | + | chr4_2:8339635-8339654 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | - | chr4_2:8339746-8339765 | Msa0586860:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | - | chr4_2:8339925-8339944 | Msa0586860:CDS | 25.0% |
| !! | TGATTTCAAGAATCTTTTTG+TGG | + | chr4_2:8338633-8338652 | None:intergenic | 25.0% |
| ! | TTTGTTCATACTTTGTCAAT+TGG | + | chr4_2:8338688-8338707 | None:intergenic | 25.0% |
| ! | AATTGACAAAGTATGAACAA+AGG | - | chr4_2:8338687-8338706 | Msa0586860:CDS | 25.0% |
| ! | ATTGACAAAGTATGAACAAA+GGG | - | chr4_2:8338688-8338707 | Msa0586860:CDS | 25.0% |
| ! | CACAAATTCTTAGATTTGAA+CGG | - | chr4_2:8338725-8338744 | Msa0586860:CDS | 25.0% |
| !!! | TCATTTCCTGTTTCTAATTT+AGG | + | chr4_2:8339130-8339149 | None:intergenic | 25.0% |
| ! | AGCAATCATTCAATGAAATT+TGG | - | chr4_2:8339236-8339255 | Msa0586860:CDS | 25.0% |
| ! | ATAGTGATTTCTTCAATCAA+AGG | + | chr4_2:8339484-8339503 | None:intergenic | 25.0% |
| ! | TTTGCATCGAAATTAATACT+TGG | + | chr4_2:8339568-8339587 | None:intergenic | 25.0% |
| !! | ACTTTTTACCTTCCTATAAT+TGG | - | chr4_2:8339595-8339614 | Msa0586860:CDS | 25.0% |
| ! | TTAACATCCAAACCAATTAT+AGG | + | chr4_2:8339610-8339629 | None:intergenic | 25.0% |
| !! | CAAGTTTCTAAGAAAAACTT+CGG | + | chr4_2:8339635-8339654 | None:intergenic | 25.0% |
| !! | CAAAGATTCTAAGAGAAAAA+GGG | - | chr4_2:8339746-8339765 | Msa0586860:CDS | 25.0% |
| !! | TTTATGAAGTCTTATGTGTT+TGG | - | chr4_2:8339925-8339944 | Msa0586860:CDS | 25.0% |
| AACCTTTGATGAACTTAGAT+GGG | - | chr4_2:8338415-8338434 | Msa0586860:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | + | chr4_2:8338459-8338478 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | + | chr4_2:8338727-8338746 | None:intergenic | 30.0% | |
| CAAATTTATGCAATGCAAGA+AGG | - | chr4_2:8338803-8338822 | Msa0586860:CDS | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | + | chr4_2:8339046-8339065 | None:intergenic | 30.0% | |
| ATTGTGCCTAAATTAGAAAC+AGG | - | chr4_2:8339121-8339140 | Msa0586860:CDS | 30.0% | |
| CGTGAAGATGAAAATTCAAA+AGG | - | chr4_2:8339196-8339215 | Msa0586860:CDS | 30.0% | |
| ACCCATAAAATCTCTCAAAA+GGG | - | chr4_2:8339285-8339304 | Msa0586860:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+GGG | + | chr4_2:8339289-8339308 | None:intergenic | 30.0% |
| !! | TACCCTTTTGAGAGATTTTA+TGG | + | chr4_2:8339290-8339309 | None:intergenic | 30.0% |
| AACTTTACAAGCACTTTCAA+AGG | + | chr4_2:8339325-8339344 | None:intergenic | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | + | chr4_2:8339349-8339368 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | - | chr4_2:8339352-8339371 | Msa0586860:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | + | chr4_2:8339508-8339527 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | - | chr4_2:8339512-8339531 | Msa0586860:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | - | chr4_2:8339535-8339554 | Msa0586860:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | - | chr4_2:8339600-8339619 | Msa0586860:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | - | chr4_2:8339633-8339652 | Msa0586860:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | - | chr4_2:8339714-8339733 | Msa0586860:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | - | chr4_2:8339745-8339764 | Msa0586860:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | - | chr4_2:8339794-8339813 | Msa0586860:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | - | chr4_2:8339828-8339847 | Msa0586860:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | - | chr4_2:8339840-8339859 | Msa0586860:CDS | 30.0% |
| AACCTTTGATGAACTTAGAT+GGG | - | chr4_2:8338415-8338434 | Msa0586860:CDS | 30.0% | |
| CTCTTCAAATTCTTCTTCAA+GGG | + | chr4_2:8338459-8338478 | None:intergenic | 30.0% | |
| CGTTCAAATCTAAGAATTTG+TGG | + | chr4_2:8338727-8338746 | None:intergenic | 30.0% | |
| CAAATTTATGCAATGCAAGA+AGG | - | chr4_2:8338803-8338822 | Msa0586860:CDS | 30.0% | |
| AACTCTTCAATCATCTTGAA+AGG | + | chr4_2:8339046-8339065 | None:intergenic | 30.0% | |
| ATTGTGCCTAAATTAGAAAC+AGG | - | chr4_2:8339121-8339140 | Msa0586860:CDS | 30.0% | |
| CGTGAAGATGAAAATTCAAA+AGG | - | chr4_2:8339196-8339215 | Msa0586860:CDS | 30.0% | |
| ACCCATAAAATCTCTCAAAA+GGG | - | chr4_2:8339285-8339304 | Msa0586860:CDS | 30.0% | |
| !! | ACCCTTTTGAGAGATTTTAT+GGG | + | chr4_2:8339289-8339308 | None:intergenic | 30.0% |
| !! | TACCCTTTTGAGAGATTTTA+TGG | + | chr4_2:8339290-8339309 | None:intergenic | 30.0% |
| AACTTTACAAGCACTTTCAA+AGG | + | chr4_2:8339325-8339344 | None:intergenic | 30.0% | |
| ! | AGATTGCTTATGATTTTCCA+TGG | + | chr4_2:8339349-8339368 | None:intergenic | 30.0% |
| AAAATCATAAGCAATCTTCC+AGG | - | chr4_2:8339352-8339371 | Msa0586860:CDS | 30.0% | |
| TTCACAAGTTCTTTAACAGA+AGG | + | chr4_2:8339508-8339527 | None:intergenic | 30.0% | |
| TTAAAGAACTTGTGAAGTCA+GGG | - | chr4_2:8339512-8339531 | Msa0586860:CDS | 30.0% | |
| ! | GTGAATTTTTCTCCTACTAA+TGG | - | chr4_2:8339535-8339554 | Msa0586860:CDS | 30.0% |
| TTACCTTCCTATAATTGGTT+TGG | - | chr4_2:8339600-8339619 | Msa0586860:CDS | 30.0% | |
| ! | CGAAGTTTTTCTTAGAAACT+TGG | - | chr4_2:8339633-8339652 | Msa0586860:CDS | 30.0% |
| GATGAATGGAATTATAGACT+CGG | - | chr4_2:8339714-8339733 | Msa0586860:CDS | 30.0% | |
| ! | GCAAAGATTCTAAGAGAAAA+AGG | - | chr4_2:8339745-8339764 | Msa0586860:CDS | 30.0% |
| ATAAAGAAGTTGCTGATATG+TGG | - | chr4_2:8339794-8339813 | Msa0586860:CDS | 30.0% | |
| CAAGTCATTGAGATTATCAA+GGG | - | chr4_2:8339828-8339847 | Msa0586860:CDS | 30.0% | |
| !!! | ATTATCAAGGGTTTTGTTCT+TGG | - | chr4_2:8339840-8339859 | Msa0586860:CDS | 30.0% |
| CAACCTTTGATGAACTTAGA+TGG | - | chr4_2:8338414-8338433 | Msa0586860:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | + | chr4_2:8338460-8338479 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | - | chr4_2:8338457-8338476 | Msa0586860:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | - | chr4_2:8338464-8338483 | Msa0586860:CDS | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | - | chr4_2:8338567-8338586 | Msa0586860:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | + | chr4_2:8338596-8338615 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | + | chr4_2:8338679-8338698 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | - | chr4_2:8338695-8338714 | Msa0586860:CDS | 35.0% | |
| TCACATTTAGTTGACTATGC+TGG | - | chr4_2:8338857-8338876 | Msa0586860:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | + | chr4_2:8339086-8339105 | None:intergenic | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | - | chr4_2:8339162-8339181 | Msa0586860:CDS | 35.0% | |
| GACCCATAAAATCTCTCAAA+AGG | - | chr4_2:8339284-8339303 | Msa0586860:CDS | 35.0% | |
| AAGTGCTTGTAAAGTTTCCA+TGG | - | chr4_2:8339329-8339348 | Msa0586860:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | + | chr4_2:8339373-8339392 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | + | chr4_2:8339481-8339500 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | - | chr4_2:8339511-8339530 | Msa0586860:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | - | chr4_2:8339513-8339532 | Msa0586860:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | + | chr4_2:8339606-8339625 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | - | chr4_2:8339651-8339670 | Msa0586860:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | - | chr4_2:8339660-8339679 | Msa0586860:CDS | 35.0% |
| GCAAGTCATTGAGATTATCA+AGG | - | chr4_2:8339827-8339846 | Msa0586860:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | - | chr4_2:8339932-8339951 | Msa0586860:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | - | chr4_2:8340024-8340043 | Msa0586860:CDS | 35.0% | |
| CAACCTTTGATGAACTTAGA+TGG | - | chr4_2:8338414-8338433 | Msa0586860:CDS | 35.0% | |
| CCTCTTCAAATTCTTCTTCA+AGG | + | chr4_2:8338460-8338479 | None:intergenic | 35.0% | |
| CCTTGAAGAAGAATTTGAAG+AGG | - | chr4_2:8338457-8338476 | Msa0586860:CDS | 35.0% | |
| GAAGAATTTGAAGAGGAAGA+TGG | - | chr4_2:8338464-8338483 | Msa0586860:CDS | 35.0% | |
| CAATTGGTCCTTACCATTAT+TGG | - | chr4_2:8338567-8338586 | Msa0586860:CDS | 35.0% | |
| CTTTGCATTTCATAGAGTTC+TGG | + | chr4_2:8338596-8338615 | None:intergenic | 35.0% | |
| ACTTTGTCAATTGGTCAACA+AGG | + | chr4_2:8338679-8338698 | None:intergenic | 35.0% | |
| AAGTATGAACAAAGGGTTAG+AGG | - | chr4_2:8338695-8338714 | Msa0586860:CDS | 35.0% | |
| TCACATTTAGTTGACTATGC+TGG | - | chr4_2:8338857-8338876 | Msa0586860:CDS | 35.0% | |
| ATCAAGCAAATGTGCACTTT+CGG | + | chr4_2:8339086-8339105 | None:intergenic | 35.0% | |
| TGTTGAGATTCAACAAGAAG+AGG | - | chr4_2:8339162-8339181 | Msa0586860:CDS | 35.0% | |
| GACCCATAAAATCTCTCAAA+AGG | - | chr4_2:8339284-8339303 | Msa0586860:CDS | 35.0% | |
| AAGTGCTTGTAAAGTTTCCA+TGG | - | chr4_2:8339329-8339348 | Msa0586860:CDS | 35.0% | |
| !!! | TGTTTTAGAAGTTTACCTCC+TGG | + | chr4_2:8339373-8339392 | None:intergenic | 35.0% |
| GTGATTTCTTCAATCAAAGG+TGG | + | chr4_2:8339481-8339500 | None:intergenic | 35.0% | |
| GTTAAAGAACTTGTGAAGTC+AGG | - | chr4_2:8339511-8339530 | Msa0586860:CDS | 35.0% | |
| TAAAGAACTTGTGAAGTCAG+GGG | - | chr4_2:8339513-8339532 | Msa0586860:CDS | 35.0% | |
| CATCCAAACCAATTATAGGA+AGG | + | chr4_2:8339606-8339625 | None:intergenic | 35.0% | |
| CTTGGTTGCATATGAATCAT+CGG | - | chr4_2:8339651-8339670 | Msa0586860:CDS | 35.0% | |
| ! | ATATGAATCATCGGTTGGAT+CGG | - | chr4_2:8339660-8339679 | Msa0586860:CDS | 35.0% |
| GCAAGTCATTGAGATTATCA+AGG | - | chr4_2:8339827-8339846 | Msa0586860:CDS | 35.0% | |
| ! | AGTCTTATGTGTTTGGTTCA+TGG | - | chr4_2:8339932-8339951 | Msa0586860:CDS | 35.0% |
| TATACTTGTAGTCGCTTCTT+TGG | - | chr4_2:8340024-8340043 | Msa0586860:CDS | 35.0% | |
| CACCCATCTAAGTTCATCAA+AGG | + | chr4_2:8338420-8338439 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | - | chr4_2:8338508-8338527 | Msa0586860:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | + | chr4_2:8338518-8338537 | None:intergenic | 40.0% | |
| TGTTGTGGAACGTAAGAATC+TGG | + | chr4_2:8338542-8338561 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | - | chr4_2:8338551-8338570 | Msa0586860:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | + | chr4_2:8338578-8338597 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | + | chr4_2:8338583-8338602 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | - | chr4_2:8338736-8338755 | Msa0586860:CDS | 40.0% | |
| ! | TGCAAGAAGGTGCAACAAAA+AGG | - | chr4_2:8338816-8338835 | Msa0586860:CDS | 40.0% |
| ! | GCAAGAAGGTGCAACAAAAA+GGG | - | chr4_2:8338817-8338836 | Msa0586860:CDS | 40.0% |
| CTTTCGGAGACTTTAATGCT+TGG | + | chr4_2:8339070-8339089 | None:intergenic | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | - | chr4_2:8339355-8339374 | Msa0586860:CDS | 40.0% | |
| !! | CAAAGGTGGCTTGTTAACAA+GGG | + | chr4_2:8339467-8339486 | None:intergenic | 40.0% |
| !! | TCAAAGGTGGCTTGTTAACA+AGG | + | chr4_2:8339468-8339487 | None:intergenic | 40.0% |
| CTTGGTATGCTTCCATTAGT+AGG | + | chr4_2:8339550-8339569 | None:intergenic | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | - | chr4_2:8339655-8339674 | Msa0586860:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | - | chr4_2:8339661-8339680 | Msa0586860:CDS | 40.0% |
| GTGTAACGCGTTATAACCAA+TGG | + | chr4_2:8339688-8339707 | None:intergenic | 40.0% | |
| CGTTACACCGAATTGATGAA+TGG | - | chr4_2:8339700-8339719 | Msa0586860:CDS | 40.0% | |
| GAATGGAATTATAGACTCGG+AGG | - | chr4_2:8339717-8339736 | Msa0586860:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | - | chr4_2:8339799-8339818 | Msa0586860:CDS | 40.0% | |
| CACCCATCTAAGTTCATCAA+AGG | + | chr4_2:8338420-8338439 | None:intergenic | 40.0% | |
| CAATGTGCCAAAGCTTCTTA+TGG | - | chr4_2:8338508-8338527 | Msa0586860:CDS | 40.0% | |
| TCACTAGCCATAAGAAGCTT+TGG | + | chr4_2:8338518-8338537 | None:intergenic | 40.0% | |
| TGTTGTGGAACGTAAGAATC+TGG | + | chr4_2:8338542-8338561 | None:intergenic | 40.0% | |
| GTTCCACAACAAGTTGCAAT+TGG | - | chr4_2:8338551-8338570 | Msa0586860:CDS | 40.0% | |
| TCTGGTCTCCAATAATGGTA+AGG | + | chr4_2:8338578-8338597 | None:intergenic | 40.0% | |
| ! | AGAGTTCTGGTCTCCAATAA+TGG | + | chr4_2:8338583-8338602 | None:intergenic | 40.0% |
| AGATTTGAACGGAGAAACGA+TGG | - | chr4_2:8338736-8338755 | Msa0586860:CDS | 40.0% | |
| ! | TGCAAGAAGGTGCAACAAAA+AGG | - | chr4_2:8338816-8338835 | Msa0586860:CDS | 40.0% |
| ! | GCAAGAAGGTGCAACAAAAA+GGG | - | chr4_2:8338817-8338836 | Msa0586860:CDS | 40.0% |
| CTTTCGGAGACTTTAATGCT+TGG | + | chr4_2:8339070-8339089 | None:intergenic | 40.0% | |
| ATCATAAGCAATCTTCCAGG+AGG | - | chr4_2:8339355-8339374 | Msa0586860:CDS | 40.0% | |
| !! | CAAAGGTGGCTTGTTAACAA+GGG | + | chr4_2:8339467-8339486 | None:intergenic | 40.0% |
| !! | TCAAAGGTGGCTTGTTAACA+AGG | + | chr4_2:8339468-8339487 | None:intergenic | 40.0% |
| CTTGGTATGCTTCCATTAGT+AGG | + | chr4_2:8339550-8339569 | None:intergenic | 40.0% | |
| GTTGCATATGAATCATCGGT+TGG | - | chr4_2:8339655-8339674 | Msa0586860:CDS | 40.0% | |
| ! | TATGAATCATCGGTTGGATC+GGG | - | chr4_2:8339661-8339680 | Msa0586860:CDS | 40.0% |
| GTGTAACGCGTTATAACCAA+TGG | + | chr4_2:8339688-8339707 | None:intergenic | 40.0% | |
| CGTTACACCGAATTGATGAA+TGG | - | chr4_2:8339700-8339719 | Msa0586860:CDS | 40.0% | |
| GAATGGAATTATAGACTCGG+AGG | - | chr4_2:8339717-8339736 | Msa0586860:CDS | 40.0% | |
| GAAGTTGCTGATATGTGGAA+TGG | - | chr4_2:8339799-8339818 | Msa0586860:CDS | 40.0% | |
| !! | GGACCAATTGCAACTTGTTG+TGG | + | chr4_2:8338557-8338576 | None:intergenic | 45.0% |
| !! | GGACCAATTGCAACTTGTTG+TGG | + | chr4_2:8338557-8338576 | None:intergenic | 45.0% |
| TGAACGGAGAAACGATGGTG+TGG | - | chr4_2:8338741-8338760 | Msa0586860:CDS | 50.0% | |
| TGAACGGAGAAACGATGGTG+TGG | - | chr4_2:8338741-8338760 | Msa0586860:CDS | 50.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | - | chr4_2:8339669-8339688 | Msa0586860:CDS | 55.0% | |
| ATCGGTTGGATCGGGACCAT+TGG | - | chr4_2:8339669-8339688 | Msa0586860:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8338374 | 8340068 | 8338374 | ID=Msa0586860;Name=Msa0586860 |
| chr4_2 | mRNA | 8338374 | 8340068 | 8338374 | ID=Msa0586860-mRNA-1;Parent=Msa0586860;Name=Msa0586860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|564 |
| chr4_2 | exon | 8338374 | 8340068 | 8338374 | ID=Msa0586860-mRNA-1:exon:2202;Parent=Msa0586860-mRNA-1 |
| chr4_2 | CDS | 8338374 | 8340068 | 8338374 | ID=Msa0586860-mRNA-1:cds;Parent=Msa0586860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
