Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587360 | XP_004506944.1 | 82.759 | 87 | 15 | 0 | 32 | 118 | 33 | 119 | 1.95e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587360 | A0A1S2YM95 | 82.759 | 87 | 15 | 0 | 32 | 118 | 33 | 119 | 9.31e-46 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091090 | Msa0587360 | 0.822893 | 1.856762e-53 | -8.615850e-47 |
| Msa0183200 | Msa0587360 | 0.826181 | 3.123072e-54 | -8.615850e-47 |
| Msa0587360 | Msa0665220 | 0.903333 | 3.866483e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587360 | MtrunA17_Chr4g0003321 | 71.318 | 129 | 21 | 2 | 1 | 118 | 1 | 124 | 1.66e-36 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0587360 | AT3G15780.1 | 51.562 | 64 | 31 | 0 | 43 | 106 | 41 | 104 | 3.64e-12 | 58.9 |
Find 68 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATTGATGCTCTCTATT+TGG | 0.157016 | 4_2:-8848275 | Msa0587360:three_prime_UTR |
| TCTGGATGACTCTATTCTTT+TGG | 0.183042 | 4_2:-8848704 | Msa0587360:CDS |
| TCTGAGTCATTCATTCATTT+TGG | 0.195398 | 4_2:-8851564 | Msa0587360:five_prime_UTR |
| TGAATTATTATTTATAAGTT+AGG | 0.226434 | 4_2:-8848595 | Msa0587360:three_prime_UTR |
| GTTCCATTTCGAGGCATTTC+AGG | 0.268459 | 4_2:+8851533 | None:intergenic |
| CCCAAACACAAGGTTTCTAA+TGG | 0.279302 | 4_2:-8848386 | Msa0587360:three_prime_UTR |
| TCCATTAGAAACCTTGTGTT+TGG | 0.284883 | 4_2:+8848385 | None:intergenic |
| TTGGGCCATTTGATTGTCTA+AGG | 0.293239 | 4_2:-8848256 | Msa0587360:three_prime_UTR |
| TCTATTGATGCTCTCTATTT+GGG | 0.305639 | 4_2:-8848274 | Msa0587360:three_prime_UTR |
| CGTGCTTAACTTGTACCTAT+TGG | 0.317532 | 4_2:+8848227 | None:intergenic |
| TAACTTGTACCTATTGGTTT+GGG | 0.325792 | 4_2:+8848233 | None:intergenic |
| ATAGATTACAATCGCTGATA+TGG | 0.332811 | 4_2:+8848292 | None:intergenic |
| AGTTTATGAATATCAATATA+TGG | 0.342718 | 4_2:-8848468 | Msa0587360:three_prime_UTR |
| TTAACTTGTACCTATTGGTT+TGG | 0.348344 | 4_2:+8848232 | None:intergenic |
| TCATGTGGTGGTGGAGGAGT+TGG | 0.357995 | 4_2:+8851364 | None:intergenic |
| CCATTAGAAACCTTGTGTTT+GGG | 0.367074 | 4_2:+8848386 | None:intergenic |
| GAATTATTATTTATAAGTTA+GGG | 0.373046 | 4_2:-8848594 | Msa0587360:three_prime_UTR |
| GGGTCGGGGTCATGTGGTGG+TGG | 0.376787 | 4_2:+8851355 | None:intergenic |
| TCGGGGTCATGTGGTGGTGG+AGG | 0.378966 | 4_2:+8851358 | None:intergenic |
| TTTGGGCTTCCGCATGGGAT+GGG | 0.406369 | 4_2:-8848686 | Msa0587360:CDS |
| ACCTTTCCTGTCTAGCATCT+TGG | 0.417203 | 4_2:-8848315 | Msa0587360:three_prime_UTR |
| GGTGGGTCGGGGTCATGTGG+TGG | 0.428338 | 4_2:+8851352 | None:intergenic |
| GGTGGTGGGTCGGGGTCATG+TGG | 0.433818 | 4_2:+8851349 | None:intergenic |
| CAACCTGAAATGCCTCGAAA+TGG | 0.440314 | 4_2:-8851536 | Msa0587360:exon |
| GCGAAGACGACGGAGGGAAG+TGG | 0.447082 | 4_2:+8851402 | None:intergenic |
| TGGTGGAAGAGATGAAGAAT+CGG | 0.457817 | 4_2:+8851494 | None:intergenic |
| TGTCTAAGGCCCAAACCAAT+AGG | 0.461165 | 4_2:-8848242 | Msa0587360:three_prime_UTR |
| TCTAATGGAATTATACTCAA+TGG | 0.464009 | 4_2:-8848371 | Msa0587360:three_prime_UTR |
| AGAAGGAGAAGGAGAGAGAG+TGG | 0.467441 | 4_2:+8851474 | None:intergenic |
| GATTTACAAGTTCCATTTCG+AGG | 0.468059 | 4_2:+8851524 | None:intergenic |
| AATGAATCAACTGAACTTCA+AGG | 0.468879 | 4_2:-8851322 | Msa0587360:intron |
| GAGAGAGAAAGTGAATAAGA+AGG | 0.484519 | 4_2:+8851457 | None:intergenic |
| AGCCACCGACAACTTGCTTA+AGG | 0.489342 | 4_2:+8848417 | None:intergenic |
| GGGCTTCCGCATGGGATGGG+AGG | 0.501401 | 4_2:-8848683 | Msa0587360:CDS |
| ATATGGCCAAGATGCTAGAC+AGG | 0.501852 | 4_2:+8848309 | None:intergenic |
| GCGGCAGCGAAGACGACGGA+GGG | 0.517868 | 4_2:+8851396 | None:intergenic |
| ACATGACCCCGACCCACCAC+CGG | 0.520766 | 4_2:-8851347 | Msa0587360:CDS |
| CTCTATCTTTCCCAAACACA+AGG | 0.522373 | 4_2:-8848396 | Msa0587360:three_prime_UTR |
| TTGGGCCTTAGACAATCAAA+TGG | 0.528690 | 4_2:+8848251 | None:intergenic |
| GAAAGTGAATAAGAAGGAGA+AGG | 0.531742 | 4_2:+8851463 | None:intergenic |
| TACTAAGAGGACGATTATCA+TGG | 0.532982 | 4_2:+8848343 | None:intergenic |
| GGAAAGGTAGTTATACTAAG+AGG | 0.552597 | 4_2:+8848330 | None:intergenic |
| AGGCACCTTAAGCAAGTTGT+CGG | 0.554175 | 4_2:-8848422 | Msa0587360:three_prime_UTR |
| TATGAATATCAATATATGGT+TGG | 0.561201 | 4_2:-8848464 | Msa0587360:three_prime_UTR |
| GTCCGAGTGGATAGAGACTC+AGG | 0.562926 | 4_2:-8848442 | Msa0587360:three_prime_UTR |
| GTCTAAAATTACTCGTGAAG+AGG | 0.563529 | 4_2:-8848492 | Msa0587360:three_prime_UTR |
| AGGAGAAGGAGAGAGAGTGG+TGG | 0.565779 | 4_2:+8851477 | None:intergenic |
| AAGAGGACGATTATCATGGA+GGG | 0.567104 | 4_2:+8848347 | None:intergenic |
| CGCGGCAGCGAAGACGACGG+AGG | 0.567872 | 4_2:+8851395 | None:intergenic |
| TGGTGGAGGAGTTGGTGATG+CGG | 0.568003 | 4_2:+8851372 | None:intergenic |
| ATTATTATTTATAAGTTAGG+GGG | 0.575939 | 4_2:-8848592 | Msa0587360:three_prime_UTR |
| CAATATATGGTTGGTCCGAG+TGG | 0.579144 | 4_2:-8848455 | Msa0587360:three_prime_UTR |
| AAGACGACGGAGGGAAGTGG+AGG | 0.580183 | 4_2:+8851405 | None:intergenic |
| GGGACAAAATTACAAAGCAA+AGG | 0.590296 | 4_2:-8848572 | Msa0587360:three_prime_UTR |
| TGGGAGGAATAGACCAAACA+AGG | 0.609905 | 4_2:-8848667 | Msa0587360:CDS |
| AATTATTATTTATAAGTTAG+GGG | 0.612615 | 4_2:-8848593 | Msa0587360:three_prime_UTR |
| CGGCGCGGCAGCGAAGACGA+CGG | 0.614388 | 4_2:+8851392 | None:intergenic |
| AAGAGAGCGGTTGAAATGAA+CGG | 0.620497 | 4_2:+8851431 | None:intergenic |
| CACCTTAAGCAAGTTGTCGG+TGG | 0.622779 | 4_2:-8848419 | Msa0587360:three_prime_UTR |
| AGAGGACGATTATCATGGAG+GGG | 0.634551 | 4_2:+8848348 | None:intergenic |
| TGCCTGAGTCTCTATCCACT+CGG | 0.637882 | 4_2:+8848440 | None:intergenic |
| GCCAAGATGCTAGACAGGAA+AGG | 0.659577 | 4_2:+8848314 | None:intergenic |
| TAAGAGGACGATTATCATGG+AGG | 0.660994 | 4_2:+8848346 | None:intergenic |
| GAAGTGGAGGAAGAAGAGAG+CGG | 0.663486 | 4_2:+8851418 | None:intergenic |
| GAAGAGATGAAGAATCGGTG+TGG | 0.670271 | 4_2:+8851499 | None:intergenic |
| GAGGAGTTGGTGATGCGGCG+CGG | 0.681777 | 4_2:+8851377 | None:intergenic |
| TCTATTCCTCCCATCCCATG+CGG | 0.708144 | 4_2:+8848677 | None:intergenic |
| GGGAGGAATAGACCAAACAA+GGG | 0.717910 | 4_2:-8848666 | Msa0587360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTATTATTTATAAGTT+AGG | - | chr4_2:8851123-8851142 | Msa0587360:intron | 10.0% |
| !! | GAATTATTATTTATAAGTTA+GGG | - | chr4_2:8851124-8851143 | Msa0587360:intron | 10.0% |
| !! | AATTATTATTTATAAGTTAG+GGG | - | chr4_2:8851125-8851144 | Msa0587360:intron | 10.0% |
| !!! | AATATAATTTGACTTTCTTT+TGG | - | chr4_2:8848589-8848608 | Msa0587360:three_prime_UTR | 15.0% |
| !! | AAGAATTAAGATAAAGTTAA+AGG | - | chr4_2:8849009-8849028 | Msa0587360:intron | 15.0% |
| !!! | TTTTGAATTATTATGATGTT+AGG | - | chr4_2:8849248-8849267 | Msa0587360:intron | 15.0% |
| !! | CTAGATTTATATCAAAATAA+GGG | + | chr4_2:8850607-8850626 | None:intergenic | 15.0% |
| !! | ACTAGATTTATATCAAAATA+AGG | + | chr4_2:8850608-8850627 | None:intergenic | 15.0% |
| !!! | TTATCACTTTCTTTTTTATT+CGG | - | chr4_2:8850636-8850655 | Msa0587360:intron | 15.0% |
| !!! | TTATGATATTTTTCTAAATC+AGG | - | chr4_2:8850765-8850784 | Msa0587360:intron | 15.0% |
| !!! | TATGATATTTTTCTAAATCA+GGG | - | chr4_2:8850766-8850785 | Msa0587360:intron | 15.0% |
| !! | ATTATTATTTATAAGTTAGG+GGG | - | chr4_2:8851126-8851145 | Msa0587360:intron | 15.0% |
| !!! | ATTTTAGACAAGAAAATTTA+TGG | + | chr4_2:8851215-8851234 | None:intergenic | 15.0% |
| !! | AGTTTATGAATATCAATATA+TGG | - | chr4_2:8851250-8851269 | Msa0587360:intron | 15.0% |
| !!! | CCATTTTGATAACTAATAAA+TGG | + | chr4_2:8848970-8848989 | None:intergenic | 20.0% |
| !! | CCATTTATTAGTTATCAAAA+TGG | - | chr4_2:8848967-8848986 | Msa0587360:intron | 20.0% |
| !! | ACTTTATCTTAATTCTTAAG+CGG | + | chr4_2:8849006-8849025 | None:intergenic | 20.0% |
| !! | AATTAAGATAAAGTTAAAGG+TGG | - | chr4_2:8849012-8849031 | Msa0587360:intron | 20.0% |
| !!! | TTATTTTTGTACCTTTTCTA+AGG | - | chr4_2:8849302-8849321 | Msa0587360:intron | 20.0% |
| !!! | ATTTAGTTCCTTTGATAAAA+TGG | + | chr4_2:8849387-8849406 | None:intergenic | 20.0% |
| !! | ATTAAAGTGAAAACAAACAA+TGG | + | chr4_2:8849438-8849457 | None:intergenic | 20.0% |
| !!! | AATGAACTCTTAGTTTTTTA+AGG | - | chr4_2:8849555-8849574 | Msa0587360:intron | 20.0% |
| !!! | TAGTTTTTTAAGGATATGTT+TGG | - | chr4_2:8849565-8849584 | Msa0587360:intron | 20.0% |
| !!! | AGTTTTTTAAGGATATGTTT+GGG | - | chr4_2:8849566-8849585 | Msa0587360:intron | 20.0% |
| !!! | AAACATTTTCCATTTATGTT+TGG | + | chr4_2:8849686-8849705 | None:intergenic | 20.0% |
| !! | ATCTTGCAAAATACAAAATA+AGG | + | chr4_2:8849850-8849869 | None:intergenic | 20.0% |
| !!! | TAGAATGTAGATTTTATTGA+AGG | - | chr4_2:8849883-8849902 | Msa0587360:intron | 20.0% |
| !!! | AACTTTTAAAACTTATTCTC+GGG | + | chr4_2:8849923-8849942 | None:intergenic | 20.0% |
| !!! | GAACTTTTAAAACTTATTCT+CGG | + | chr4_2:8849924-8849943 | None:intergenic | 20.0% |
| !! | AAAAGAAAGTGATAATTCAA+AGG | + | chr4_2:8850631-8850650 | None:intergenic | 20.0% |
| !! | GTTAACTTTACAATTAAAGA+GGG | + | chr4_2:8850703-8850722 | None:intergenic | 20.0% |
| !! | AGTTAACTTTACAATTAAAG+AGG | + | chr4_2:8850704-8850723 | None:intergenic | 20.0% |
| !! | TTTAATTGTAAAGTTAACTG+AGG | - | chr4_2:8850705-8850724 | Msa0587360:intron | 20.0% |
| !! | TTAATTGTAAAGTTAACTGA+GGG | - | chr4_2:8850706-8850725 | Msa0587360:intron | 20.0% |
| !!! | TCTATCTTGAAATTTTGATA+AGG | + | chr4_2:8850969-8850988 | None:intergenic | 20.0% |
| !! | TATGAATATCAATATATGGT+TGG | - | chr4_2:8851254-8851273 | Msa0587360:intron | 20.0% |
| ! | ACAAGAATTAGAATAGTTTG+TGG | - | chr4_2:8848563-8848582 | Msa0587360:three_prime_UTR | 25.0% |
| !! | TTTCAAGTGATATTTATGTG+TGG | + | chr4_2:8848662-8848681 | None:intergenic | 25.0% |
| ! | ATTCGTAACGGTTAAATAAA+AGG | - | chr4_2:8848778-8848797 | Msa0587360:intron | 25.0% |
| ! | TTCGTAACGGTTAAATAAAA+GGG | - | chr4_2:8848779-8848798 | Msa0587360:intron | 25.0% |
| !!! | CTATGAGCTTTTATTTTCAA+AGG | - | chr4_2:8848890-8848909 | Msa0587360:intron | 25.0% |
| !! | TTATTTTCAAAGGATGACAT+CGG | - | chr4_2:8848900-8848919 | Msa0587360:intron | 25.0% |
| !! | TGATTTCAAGTAATGATTCA+TGG | - | chr4_2:8848940-8848959 | Msa0587360:intron | 25.0% |
| ! | CTTTATCTTAATTCTTAAGC+GGG | + | chr4_2:8849005-8849024 | None:intergenic | 25.0% |
| ! | ATAAAGTTAAAGGTGGAATT+TGG | - | chr4_2:8849019-8849038 | Msa0587360:intron | 25.0% |
| !!! | TAGAAAGTATTGAGAAATAG+CGG | - | chr4_2:8849127-8849146 | Msa0587360:intron | 25.0% |
| ! | TTCAAAATTATTCCATTCCA+TGG | + | chr4_2:8849235-8849254 | None:intergenic | 25.0% |
| ! | GAATTATTATGATGTTAGGT+TGG | - | chr4_2:8849252-8849271 | Msa0587360:intron | 25.0% |
| !! | ATGGAAAACCATTTTATCAA+AGG | - | chr4_2:8849376-8849395 | Msa0587360:intron | 25.0% |
| !!! | GCTAGTTAGATTTTTTGAAA+TGG | + | chr4_2:8849641-8849660 | None:intergenic | 25.0% |
| !! | TTTTCCATTTATGTTTGGAT+TGG | + | chr4_2:8849681-8849700 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAACGAAAGAAT+AGG | - | chr4_2:8849945-8849964 | Msa0587360:intron | 25.0% |
| !! | AGAAAATAACAAGCATTGTA+TGG | + | chr4_2:8849982-8850001 | None:intergenic | 25.0% |
| !!! | ATTTTCTGAGAATAAGTCTT+TGG | - | chr4_2:8849995-8850014 | Msa0587360:intron | 25.0% |
| ! | AAGGATACTCTAATTCATTA+TGG | - | chr4_2:8850025-8850044 | Msa0587360:intron | 25.0% |
| !!! | ATTTTAGTTGAAACGATCTT+TGG | - | chr4_2:8850149-8850168 | Msa0587360:intron | 25.0% |
| !! | GTTGATCTTTTTATTCTTGT+TGG | - | chr4_2:8850457-8850476 | Msa0587360:intron | 25.0% |
| ! | TTCTACTCAATAATTATCCA+AGG | + | chr4_2:8850579-8850598 | None:intergenic | 25.0% |
| ! | TATTACATTTCGATAGTTCA+GGG | + | chr4_2:8850663-8850682 | None:intergenic | 25.0% |
| ! | TTATTACATTTCGATAGTTC+AGG | + | chr4_2:8850664-8850683 | None:intergenic | 25.0% |
| !! | AATTAAAGAGGGAATAGTTT+TGG | + | chr4_2:8850692-8850711 | None:intergenic | 25.0% |
| ! | TCAAGTGTAAATCTTCAATT+TGG | + | chr4_2:8850824-8850843 | None:intergenic | 25.0% |
| !!! | ACAAGATCTTTTTTCTTTTG+AGG | - | chr4_2:8850926-8850945 | Msa0587360:intron | 25.0% |
| ! | TCTAATGGAATTATACTCAA+TGG | - | chr4_2:8851347-8851366 | Msa0587360:CDS | 25.0% |
| !! | AGTTCAGTTGATTCATTTTC+CGG | + | chr4_2:8848393-8848412 | None:intergenic | 30.0% |
| AATGAATCAACTGAACTTCA+AGG | - | chr4_2:8848396-8848415 | Msa0587360:three_prime_UTR | 30.0% | |
| AACAGATTCACACAACATAA+GGG | + | chr4_2:8848538-8848557 | None:intergenic | 30.0% | |
| AAACAGATTCACACAACATA+AGG | + | chr4_2:8848539-8848558 | None:intergenic | 30.0% | |
| TTGGTTGAATTGAACTTCAA+AGG | - | chr4_2:8848608-8848627 | Msa0587360:three_prime_UTR | 30.0% | |
| TGGTTGAATTGAACTTCAAA+GGG | - | chr4_2:8848609-8848628 | Msa0587360:three_prime_UTR | 30.0% | |
| TATCACTTGAAACTTCTACT+AGG | - | chr4_2:8848670-8848689 | Msa0587360:CDS | 30.0% | |
| !! | TTTCTAGTTTCTACTACCTT+GGG | + | chr4_2:8848710-8848729 | None:intergenic | 30.0% |
| ! | TTAAAGGTGGAATTTGGTTT+AGG | - | chr4_2:8849025-8849044 | Msa0587360:intron | 30.0% |
| CCTCTATAATAACAACACAA+TGG | + | chr4_2:8849052-8849071 | None:intergenic | 30.0% | |
| ! | CCATTGTGTTGTTATTATAG+AGG | - | chr4_2:8849049-8849068 | Msa0587360:intron | 30.0% |
| GATCTGCAATTGACAATATT+GGG | - | chr4_2:8849208-8849227 | Msa0587360:intron | 30.0% | |
| !! | TTGTACCTTTTCTAAGGATT+CGG | - | chr4_2:8849308-8849327 | Msa0587360:intron | 30.0% |
| ACTGAAACTGTTAACAGATA+TGG | - | chr4_2:8849344-8849363 | Msa0587360:intron | 30.0% | |
| CTGAAACTGTTAACAGATAT+GGG | - | chr4_2:8849345-8849364 | Msa0587360:intron | 30.0% | |
| TGAAACTGTTAACAGATATG+GGG | - | chr4_2:8849346-8849365 | Msa0587360:intron | 30.0% | |
| ACAGATATGGGGTATATAAA+TGG | - | chr4_2:8849357-8849376 | Msa0587360:intron | 30.0% | |
| TGAAAACAAACAATGGAAAC+AGG | + | chr4_2:8849431-8849450 | None:intergenic | 30.0% | |
| !! | TTTTAAGGATATGTTTGGGT+TGG | - | chr4_2:8849570-8849589 | Msa0587360:intron | 30.0% |
| ! | ATAAGTCTTTGGCTCATAAA+AGG | - | chr4_2:8850006-8850025 | Msa0587360:intron | 30.0% |
| ATCATAAAGTGACTTTGTCT+TGG | + | chr4_2:8850121-8850140 | None:intergenic | 30.0% | |
| ! | GTGGTATTGAATAAAAACGA+AGG | + | chr4_2:8850551-8850570 | None:intergenic | 30.0% |
| ATAATTATCCAAGGACATTG+TGG | + | chr4_2:8850570-8850589 | None:intergenic | 30.0% | |
| GATGATTTGAAAATAGCGTA+AGG | - | chr4_2:8850737-8850756 | Msa0587360:intron | 30.0% | |
| CTATTATTCTCTCTCCTATT+TGG | + | chr4_2:8850793-8850812 | None:intergenic | 30.0% | |
| CAAATAGGAGAGAGAATAAT+AGG | - | chr4_2:8850791-8850810 | Msa0587360:intron | 30.0% | |
| ATACACAGTTTCTATCTGTT+AGG | - | chr4_2:8850852-8850871 | Msa0587360:intron | 30.0% | |
| !!! | CTATATTTTGATCCCTTGTT+TGG | + | chr4_2:8851067-8851086 | None:intergenic | 30.0% |
| ATAGATTACAATCGCTGATA+TGG | + | chr4_2:8851429-8851448 | None:intergenic | 30.0% | |
| ATCTATTGATGCTCTCTATT+TGG | - | chr4_2:8851443-8851462 | Msa0587360:CDS | 30.0% | |
| TCTATTGATGCTCTCTATTT+GGG | - | chr4_2:8851444-8851463 | Msa0587360:CDS | 30.0% | |
| !! | TAACTTGTACCTATTGGTTT+GGG | + | chr4_2:8851488-8851507 | None:intergenic | 30.0% |
| !! | TTAACTTGTACCTATTGGTT+TGG | + | chr4_2:8851489-8851508 | None:intergenic | 30.0% |
| GATTTACAAGTTCCATTTCG+AGG | + | chr4_2:8848197-8848216 | None:intergenic | 35.0% | |
| GAAAGTGAATAAGAAGGAGA+AGG | + | chr4_2:8848258-8848277 | None:intergenic | 35.0% | |
| GAGAGAGAAAGTGAATAAGA+AGG | + | chr4_2:8848264-8848283 | None:intergenic | 35.0% | |
| ACTTCAAAGGGATAAGAGTT+AGG | - | chr4_2:8848621-8848640 | Msa0587360:three_prime_UTR | 35.0% | |
| !! | GTTTCTAGTTTCTACTACCT+TGG | + | chr4_2:8848711-8848730 | None:intergenic | 35.0% |
| ! | TTCTTAAGCGGGTTCTATTA+TGG | + | chr4_2:8848994-8849013 | None:intergenic | 35.0% |
| TTGAGAAATAGCGGCTATAA+CGG | - | chr4_2:8849136-8849155 | Msa0587360:intron | 35.0% | |
| CGATCTGCAATTGACAATAT+TGG | - | chr4_2:8849207-8849226 | Msa0587360:intron | 35.0% | |
| AATTGACAATATTGGGTCCA+TGG | - | chr4_2:8849215-8849234 | Msa0587360:intron | 35.0% | |
| TGTTTCCGAATCCTTAGAAA+AGG | + | chr4_2:8849316-8849335 | None:intergenic | 35.0% | |
| !! | TTTTCTAAGGATTCGGAAAC+AGG | - | chr4_2:8849315-8849334 | Msa0587360:intron | 35.0% |
| GTGGAAAACTGTGTTAACAT+TGG | - | chr4_2:8849519-8849538 | Msa0587360:intron | 35.0% | |
| ACCACCAATCCAAACATAAA+TGG | - | chr4_2:8849674-8849693 | Msa0587360:intron | 35.0% | |
| ! | TCCATTTATGTTTGGATTGG+TGG | + | chr4_2:8849678-8849697 | None:intergenic | 35.0% |
| TGTTGTGGCATTTCTTAAGA+CGG | + | chr4_2:8849750-8849769 | None:intergenic | 35.0% | |
| CATAAGCGCAAATAATGTTG+TGG | + | chr4_2:8849765-8849784 | None:intergenic | 35.0% | |
| AATGTCAAACATGATGGTCA+CGG | + | chr4_2:8849795-8849814 | None:intergenic | 35.0% | |
| TCACTGAATGTCAAACATGA+TGG | + | chr4_2:8849801-8849820 | None:intergenic | 35.0% | |
| !! | GGTTTTTGTATTGACAGATG+TGG | + | chr4_2:8850090-8850109 | None:intergenic | 35.0% |
| !!! | TGCTACACTGTAGTCTTTTT+TGG | - | chr4_2:8850319-8850338 | Msa0587360:intron | 35.0% |
| TATACTACACCTGACAAGAA+TGG | + | chr4_2:8850351-8850370 | None:intergenic | 35.0% | |
| ! | TGGATTTTGTATTCTAGCCT+CGG | - | chr4_2:8850477-8850496 | Msa0587360:intron | 35.0% |
| ATTCAATACCACAATGTCCT+TGG | - | chr4_2:8850559-8850578 | Msa0587360:intron | 35.0% | |
| TTCTAAATCAGGGACCAAAT+AGG | - | chr4_2:8850776-8850795 | Msa0587360:intron | 35.0% | |
| GTGTTTATGCTTCTATAGCA+AGG | - | chr4_2:8850885-8850904 | Msa0587360:intron | 35.0% | |
| CTATAGCAAGGTGTAACTTT+CGG | - | chr4_2:8850897-8850916 | Msa0587360:intron | 35.0% | |
| !!! | TCTTTTTTCTTTTGAGGAGC+AGG | - | chr4_2:8850932-8850951 | Msa0587360:intron | 35.0% |
| ! | TCTGGATGACTCTATTCTTT+TGG | - | chr4_2:8851014-8851033 | Msa0587360:intron | 35.0% |
| ! | CTGGATGACTCTATTCTTTT+GGG | - | chr4_2:8851015-8851034 | Msa0587360:intron | 35.0% |
| GGGACAAAATTACAAAGCAA+AGG | - | chr4_2:8851146-8851165 | Msa0587360:intron | 35.0% | |
| ! | GTCTAAAATTACTCGTGAAG+AGG | - | chr4_2:8851226-8851245 | Msa0587360:intron | 35.0% |
| CCATTAGAAACCTTGTGTTT+GGG | + | chr4_2:8851335-8851354 | None:intergenic | 35.0% | |
| TCCATTAGAAACCTTGTGTT+TGG | + | chr4_2:8851336-8851355 | None:intergenic | 35.0% | |
| TACTAAGAGGACGATTATCA+TGG | + | chr4_2:8851378-8851397 | None:intergenic | 35.0% | |
| GGAAAGGTAGTTATACTAAG+AGG | + | chr4_2:8851391-8851410 | None:intergenic | 35.0% | |
| TGGTGGAAGAGATGAAGAAT+CGG | + | chr4_2:8848227-8848246 | None:intergenic | 40.0% | |
| AAGAGAGCGGTTGAAATGAA+CGG | + | chr4_2:8848290-8848309 | None:intergenic | 40.0% | |
| ! | TTGATTCATTTTCCGGTGGT+GGG | + | chr4_2:8848386-8848405 | None:intergenic | 40.0% |
| !! | TCAGTTGATTCATTTTCCGG+TGG | + | chr4_2:8848390-8848409 | None:intergenic | 40.0% |
| ! | GTCAGTGACTTGATTCGTAA+CGG | - | chr4_2:8848766-8848785 | Msa0587360:CDS | 40.0% |
| ! | TATGCTTTCTGACACCGATT+AGG | - | chr4_2:8848837-8848856 | Msa0587360:intron | 40.0% |
| TCTATAGCGCTATTGCATAG+CGG | - | chr4_2:8849073-8849092 | Msa0587360:intron | 40.0% | |
| ACAATATTGGGTCCATGGAA+TGG | - | chr4_2:8849220-8849239 | Msa0587360:intron | 40.0% | |
| !! | GTCGCTTGTTTTCACTTTAG+TGG | - | chr4_2:8849500-8849519 | Msa0587360:intron | 40.0% |
| !! | TAAGGATATGTTTGGGTTGG+TGG | - | chr4_2:8849573-8849592 | Msa0587360:intron | 40.0% |
| !! | TATGTTTGGGTTGGTGGTAT+TGG | - | chr4_2:8849579-8849598 | Msa0587360:intron | 40.0% |
| !! | ATGTTTGGGTTGGTGGTATT+GGG | - | chr4_2:8849580-8849599 | Msa0587360:intron | 40.0% |
| TATTGACAGATGTGGCAAGT+TGG | + | chr4_2:8850082-8850101 | None:intergenic | 40.0% | |
| !! | GACTTTGTCTTGGCTAGTTT+GGG | + | chr4_2:8850111-8850130 | None:intergenic | 40.0% |
| ! | TGACTTTGTCTTGGCTAGTT+TGG | + | chr4_2:8850112-8850131 | None:intergenic | 40.0% |
| AGTCGCTATTCTTACGCAAT+AGG | + | chr4_2:8850289-8850308 | None:intergenic | 40.0% | |
| ! | GGATTTTGTATTCTAGCCTC+GGG | - | chr4_2:8850478-8850497 | Msa0587360:intron | 40.0% |
| ! | CTATCTGTTAGGCTTTAGTG+TGG | - | chr4_2:8850863-8850882 | Msa0587360:intron | 40.0% |
| ! | TCTTCTTCGCTGTTCTTTTC+TGG | - | chr4_2:8850996-8851015 | Msa0587360:intron | 40.0% |
| CTCTATCTTTCCCAAACACA+AGG | - | chr4_2:8851322-8851341 | Msa0587360:intron | 40.0% | |
| CCCAAACACAAGGTTTCTAA+TGG | - | chr4_2:8851332-8851351 | Msa0587360:CDS | 40.0% | |
| AAGAGGACGATTATCATGGA+GGG | + | chr4_2:8851374-8851393 | None:intergenic | 40.0% | |
| TAAGAGGACGATTATCATGG+AGG | + | chr4_2:8851375-8851394 | None:intergenic | 40.0% | |
| TTGGGCCATTTGATTGTCTA+AGG | - | chr4_2:8851462-8851481 | Msa0587360:CDS | 40.0% | |
| TTGGGCCTTAGACAATCAAA+TGG | + | chr4_2:8851470-8851489 | None:intergenic | 40.0% | |
| !! | CGTGCTTAACTTGTACCTAT+TGG | + | chr4_2:8851494-8851513 | None:intergenic | 40.0% |
| CAACCTGAAATGCCTCGAAA+TGG | - | chr4_2:8848182-8848201 | Msa0587360:three_prime_UTR | 45.0% | |
| ! | GTTCCATTTCGAGGCATTTC+AGG | + | chr4_2:8848188-8848207 | None:intergenic | 45.0% |
| GAAGAGATGAAGAATCGGTG+TGG | + | chr4_2:8848222-8848241 | None:intergenic | 45.0% | |
| !! | GTTGATTCATTTTCCGGTGG+TGG | + | chr4_2:8848387-8848406 | None:intergenic | 45.0% |
| GGACTCACAATATTCACCCA+AGG | - | chr4_2:8848691-8848710 | Msa0587360:CDS | 45.0% | |
| GAGTGAGACAGTGACCTAAT+CGG | + | chr4_2:8848854-8848873 | None:intergenic | 45.0% | |
| TGCTAAGCACAGTTGTGTAG+CGG | - | chr4_2:8849159-8849178 | Msa0587360:intron | 45.0% | |
| TTGTCAAATAGCAGCTACCG+AGG | + | chr4_2:8850250-8850269 | None:intergenic | 45.0% | |
| TGGACAACACCATTCTTGTC+AGG | - | chr4_2:8850339-8850358 | Msa0587360:intron | 45.0% | |
| CATATAGTATGCATGTCCCG+AGG | + | chr4_2:8850497-8850516 | None:intergenic | 45.0% | |
| ! | TATTCTTTTGGGCTTCCGCA+TGG | - | chr4_2:8851026-8851045 | Msa0587360:intron | 45.0% |
| ! | ATTCTTTTGGGCTTCCGCAT+GGG | - | chr4_2:8851027-8851046 | Msa0587360:intron | 45.0% |
| TGGGAGGAATAGACCAAACA+AGG | - | chr4_2:8851051-8851070 | Msa0587360:intron | 45.0% | |
| GGGAGGAATAGACCAAACAA+GGG | - | chr4_2:8851052-8851071 | Msa0587360:intron | 45.0% | |
| ! | CAATATATGGTTGGTCCGAG+TGG | - | chr4_2:8851263-8851282 | Msa0587360:intron | 45.0% |
| AGGCACCTTAAGCAAGTTGT+CGG | - | chr4_2:8851296-8851315 | Msa0587360:intron | 45.0% | |
| AGAGGACGATTATCATGGAG+GGG | + | chr4_2:8851373-8851392 | None:intergenic | 45.0% | |
| ACCTTTCCTGTCTAGCATCT+TGG | - | chr4_2:8851403-8851422 | Msa0587360:CDS | 45.0% | |
| ATATGGCCAAGATGCTAGAC+AGG | + | chr4_2:8851412-8851431 | None:intergenic | 45.0% | |
| ! | TGTCTAAGGCCCAAACCAAT+AGG | - | chr4_2:8851476-8851495 | Msa0587360:CDS | 45.0% |
| AGAAGGAGAAGGAGAGAGAG+TGG | + | chr4_2:8848247-8848266 | None:intergenic | 50.0% | |
| GAAGTGGAGGAAGAAGAGAG+CGG | + | chr4_2:8848303-8848322 | None:intergenic | 50.0% | |
| !!! | TTCATTTTCCGGTGGTGGGT+CGG | + | chr4_2:8848382-8848401 | None:intergenic | 50.0% |
| ACTGTCTCACTCACGAGAAC+AGG | - | chr4_2:8848862-8848881 | Msa0587360:intron | 50.0% | |
| CTGTCTCACTCACGAGAACA+GGG | - | chr4_2:8848863-8848882 | Msa0587360:intron | 50.0% | |
| !! | TTTGGGTTGGTGGTATTGGG+TGG | - | chr4_2:8849583-8849602 | Msa0587360:intron | 50.0% |
| !! | GTTGGTGGTATTGGGTGGAA+TGG | - | chr4_2:8849588-8849607 | Msa0587360:intron | 50.0% |
| TCAAATAGCAGCTACCGAGG+CGG | + | chr4_2:8850247-8850266 | None:intergenic | 50.0% | |
| TCTATTCCTCCCATCCCATG+CGG | + | chr4_2:8851044-8851063 | None:intergenic | 50.0% | |
| TGCCTGAGTCTCTATCCACT+CGG | + | chr4_2:8851281-8851300 | None:intergenic | 50.0% | |
| CACCTTAAGCAAGTTGTCGG+TGG | - | chr4_2:8851299-8851318 | Msa0587360:intron | 50.0% | |
| ! | AGCCACCGACAACTTGCTTA+AGG | + | chr4_2:8851304-8851323 | None:intergenic | 50.0% |
| GCCAAGATGCTAGACAGGAA+AGG | + | chr4_2:8851407-8851426 | None:intergenic | 50.0% | |
| AGGAGAAGGAGAGAGAGTGG+TGG | + | chr4_2:8848244-8848263 | None:intergenic | 55.0% | |
| !! | TGGTGGAGGAGTTGGTGATG+CGG | + | chr4_2:8848349-8848368 | None:intergenic | 55.0% |
| !! | TCATGTGGTGGTGGAGGAGT+TGG | + | chr4_2:8848357-8848376 | None:intergenic | 55.0% |
| !!! | TCATTTTCCGGTGGTGGGTC+GGG | + | chr4_2:8848381-8848400 | None:intergenic | 55.0% |
| ! | GCGGTATAGCACTGGAGCAT+AGG | + | chr4_2:8850228-8850247 | None:intergenic | 55.0% |
| ! | TTTTGGGCTTCCGCATGGGA+TGG | - | chr4_2:8851031-8851050 | Msa0587360:intron | 55.0% |
| TTTGGGCTTCCGCATGGGAT+GGG | - | chr4_2:8851032-8851051 | Msa0587360:intron | 55.0% | |
| GTCCGAGTGGATAGAGACTC+AGG | - | chr4_2:8851276-8851295 | Msa0587360:intron | 55.0% | |
| AAGACGACGGAGGGAAGTGG+AGG | + | chr4_2:8848316-8848335 | None:intergenic | 60.0% | |
| !!! | CATTTTCCGGTGGTGGGTCG+GGG | + | chr4_2:8848380-8848399 | None:intergenic | 60.0% |
| GCTCCAGTGCTATACCGCCT+CGG | - | chr4_2:8850230-8850249 | Msa0587360:intron | 60.0% | |
| CTACCGAGGCGGTATAGCAC+TGG | + | chr4_2:8850236-8850255 | None:intergenic | 60.0% | |
| GCGAAGACGACGGAGGGAAG+TGG | + | chr4_2:8848319-8848338 | None:intergenic | 65.0% | |
| !! | GAGGAGTTGGTGATGCGGCG+CGG | + | chr4_2:8848344-8848363 | None:intergenic | 65.0% |
| !! | TCGGGGTCATGTGGTGGTGG+AGG | + | chr4_2:8848363-8848382 | None:intergenic | 65.0% |
| ACATGACCCCGACCCACCAC+CGG | - | chr4_2:8848371-8848390 | Msa0587360:three_prime_UTR | 65.0% | |
| GCGGCAGCGAAGACGACGGA+GGG | + | chr4_2:8848325-8848344 | None:intergenic | 70.0% | |
| GGGTCGGGGTCATGTGGTGG+TGG | + | chr4_2:8848366-8848385 | None:intergenic | 70.0% | |
| GGTGGGTCGGGGTCATGTGG+TGG | + | chr4_2:8848369-8848388 | None:intergenic | 70.0% | |
| !! | GGTGGTGGGTCGGGGTCATG+TGG | + | chr4_2:8848372-8848391 | None:intergenic | 70.0% |
| GGGCTTCCGCATGGGATGGG+AGG | - | chr4_2:8851035-8851054 | Msa0587360:intron | 70.0% | |
| CGCGGCAGCGAAGACGACGG+AGG | + | chr4_2:8848326-8848345 | None:intergenic | 75.0% | |
| CGGCGCGGCAGCGAAGACGA+CGG | + | chr4_2:8848329-8848348 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 8848155 | 8851585 | 8848155 | ID=Msa0587360;Name=Msa0587360 |
| chr4_2 | mRNA | 8848155 | 8851585 | 8848155 | ID=Msa0587360-mRNA-1;Parent=Msa0587360;Name=Msa0587360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|0|0.5|2|492|118 |
| chr4_2 | exon | 8848155 | 8848786 | 8848155 | ID=Msa0587360-mRNA-1:exon:2435;Parent=Msa0587360-mRNA-1 |
| chr4_2 | exon | 8851323 | 8851585 | 8851323 | ID=Msa0587360-mRNA-1:exon:2434;Parent=Msa0587360-mRNA-1 |
| chr4_2 | five_prime_UTR | 8851540 | 8851585 | 8851540 | ID=Msa0587360-mRNA-1:five_prime_utr;Parent=Msa0587360-mRNA-1 |
| chr4_2 | CDS | 8851323 | 8851539 | 8851323 | ID=Msa0587360-mRNA-1:cds;Parent=Msa0587360-mRNA-1 |
| chr4_2 | CDS | 8848647 | 8848786 | 8848647 | ID=Msa0587360-mRNA-1:cds;Parent=Msa0587360-mRNA-1 |
| chr4_2 | three_prime_UTR | 8848155 | 8848646 | 8848155 | ID=Msa0587360-mRNA-1:three_prime_utr;Parent=Msa0587360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
