Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665220 | XP_004506944.1 | 82.759 | 87 | 15 | 0 | 32 | 118 | 33 | 119 | 2.10e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665220 | A0A1S2YM95 | 82.759 | 87 | 15 | 0 | 32 | 118 | 33 | 119 | 1.00e-45 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091090 | Msa0665220 | 0.806966 | 6.364442e-50 | -8.615850e-47 |
| Msa0665220 | Msa1450630 | 0.810814 | 9.557209e-51 | -8.615850e-47 |
| Msa0188500 | Msa0665220 | 0.807887 | 4.057159e-50 | -8.615850e-47 |
| Msa0428330 | Msa0665220 | 0.815731 | 7.953475e-52 | -8.615850e-47 |
| Msa0587360 | Msa0665220 | 0.903333 | 3.866483e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665220 | MtrunA17_Chr4g0003321 | 73.643 | 129 | 18 | 2 | 1 | 118 | 1 | 124 | 6.45e-38 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665220 | AT3G15780.1 | 51.562 | 64 | 31 | 0 | 43 | 106 | 41 | 104 | 3.68e-12 | 58.9 |
Find 65 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATTGATGCTCTCTATT+TGG | 0.157016 | 4_4:-4610494 | Msa0665220:three_prime_UTR |
| TCTGGATGACTCTATTCTTT+TGG | 0.183042 | 4_4:-4610923 | Msa0665220:CDS |
| TCTGAGTCATTCATTCATTT+TGG | 0.195398 | 4_4:-4613806 | Msa0665220:five_prime_UTR |
| TGAATTATTATTTATAAGTT+AGG | 0.226434 | 4_4:-4610814 | Msa0665220:three_prime_UTR |
| GTTCCATTTCGAGGCATTTC+AGG | 0.268459 | 4_4:+4613775 | None:intergenic |
| CCCAAACACAAGGTTTCTAA+TGG | 0.279302 | 4_4:-4610605 | Msa0665220:three_prime_UTR |
| TCCATTAGAAACCTTGTGTT+TGG | 0.284883 | 4_4:+4610604 | None:intergenic |
| TTGGGCCATTTGATTGTCTA+AGG | 0.293239 | 4_4:-4610475 | Msa0665220:three_prime_UTR |
| TCTATTGATGCTCTCTATTT+GGG | 0.305639 | 4_4:-4610493 | Msa0665220:three_prime_UTR |
| CGTGCTTAACTTGTACCTAT+TGG | 0.317532 | 4_4:+4610446 | None:intergenic |
| TAACTTGTACCTATTGGTTT+GGG | 0.325792 | 4_4:+4610452 | None:intergenic |
| ATAGATTACAATCGCTGATA+TGG | 0.332811 | 4_4:+4610511 | None:intergenic |
| AGTTTATGAATATCAATATA+TGG | 0.342718 | 4_4:-4610687 | Msa0665220:three_prime_UTR |
| TTAACTTGTACCTATTGGTT+TGG | 0.348344 | 4_4:+4610451 | None:intergenic |
| TCATGTGGTGGTGGAGGAGT+TGG | 0.357995 | 4_4:+4613606 | None:intergenic |
| CCATTAGAAACCTTGTGTTT+GGG | 0.367074 | 4_4:+4610605 | None:intergenic |
| GAATTATTATTTATAAGTTA+GGG | 0.373046 | 4_4:-4610813 | Msa0665220:three_prime_UTR |
| GGGTCGGGGTCATGTGGTGG+TGG | 0.376787 | 4_4:+4613597 | None:intergenic |
| TCGGGGTCATGTGGTGGTGG+AGG | 0.378966 | 4_4:+4613600 | None:intergenic |
| TTTGGGCTTCCGCATGGGAT+GGG | 0.406369 | 4_4:-4610905 | Msa0665220:CDS |
| ACCTTTCCTGTCTAGCATCT+TGG | 0.417203 | 4_4:-4610534 | Msa0665220:three_prime_UTR |
| GGTGGGTCGGGGTCATGTGG+TGG | 0.428338 | 4_4:+4613594 | None:intergenic |
| GGTGGTGGGTCGGGGTCATG+TGG | 0.433818 | 4_4:+4613591 | None:intergenic |
| CAACCTGAAATGCCTCGAAA+TGG | 0.440314 | 4_4:-4613778 | Msa0665220:exon |
| TGTCTAAGGCCCAAACCAAT+AGG | 0.461165 | 4_4:-4610461 | Msa0665220:three_prime_UTR |
| AGAAGGAGAAGGAGAGAGAG+TGG | 0.462703 | 4_4:+4613716 | None:intergenic |
| TCTAATGGAATTATACTCAA+TGG | 0.464009 | 4_4:-4610590 | Msa0665220:three_prime_UTR |
| GATTTACAAGTTCCATTTCG+AGG | 0.468059 | 4_4:+4613766 | None:intergenic |
| AATGAATCAACTGAACTTCA+AGG | 0.468879 | 4_4:-4613564 | Msa0665220:intron |
| AGCCACCGACAACTTGCTTA+AGG | 0.489342 | 4_4:+4610636 | None:intergenic |
| GAGAGAGAAAGTGAAGAAGA+AGG | 0.495640 | 4_4:+4613699 | None:intergenic |
| GGGCTTCCGCATGGGATGGG+AGG | 0.501401 | 4_4:-4610902 | Msa0665220:CDS |
| ATATGGCCAAGATGCTAGAC+AGG | 0.501852 | 4_4:+4610528 | None:intergenic |
| ACATGACCCCGACCCACCAC+CGG | 0.520766 | 4_4:-4613589 | Msa0665220:CDS |
| GAAAGTGAAGAAGAAGGAGA+AGG | 0.521431 | 4_4:+4613705 | None:intergenic |
| CTCTATCTTTCCCAAACACA+AGG | 0.522373 | 4_4:-4610615 | Msa0665220:three_prime_UTR |
| TTGGGCCTTAGACAATCAAA+TGG | 0.528690 | 4_4:+4610470 | None:intergenic |
| TACTAAGAGGACGATTATCA+TGG | 0.532982 | 4_4:+4610562 | None:intergenic |
| GCGAAGACGACGGAGAGAAG+TGG | 0.545900 | 4_4:+4613644 | None:intergenic |
| GGAAAGGTAGTTATACTAAG+AGG | 0.552597 | 4_4:+4610549 | None:intergenic |
| AGGCACCTTAAGCAAGTTGT+CGG | 0.554175 | 4_4:-4610641 | Msa0665220:three_prime_UTR |
| TATGAATATCAATATATGGT+TGG | 0.561201 | 4_4:-4610683 | Msa0665220:three_prime_UTR |
| GTCCGAGTGGATAGAGACTC+AGG | 0.562926 | 4_4:-4610661 | Msa0665220:three_prime_UTR |
| GTCTAAAATTACTCGTGAAG+AGG | 0.563529 | 4_4:-4610711 | Msa0665220:three_prime_UTR |
| AGGAGAAGGAGAGAGAGTGG+TGG | 0.565779 | 4_4:+4613719 | None:intergenic |
| AAGAGGACGATTATCATGGA+GGG | 0.567104 | 4_4:+4610566 | None:intergenic |
| TGGTGGAGGAGTTGGTGATG+CGG | 0.568003 | 4_4:+4613614 | None:intergenic |
| ATTATTATTTATAAGTTAGG+GGG | 0.575939 | 4_4:-4610811 | Msa0665220:three_prime_UTR |
| CAATATATGGTTGGTCCGAG+TGG | 0.579144 | 4_4:-4610674 | Msa0665220:three_prime_UTR |
| CGGCGCGGCAGCGAAGACGA+CGG | 0.583470 | 4_4:+4613634 | None:intergenic |
| GGGACAAAATTACAAAGCAA+AGG | 0.590296 | 4_4:-4610791 | Msa0665220:three_prime_UTR |
| AAGACGACGGAGAGAAGTGG+AGG | 0.600484 | 4_4:+4613647 | None:intergenic |
| TGGGAGGAATAGACCAAACA+AGG | 0.609905 | 4_4:-4610886 | Msa0665220:CDS |
| AATTATTATTTATAAGTTAG+GGG | 0.612615 | 4_4:-4610812 | Msa0665220:three_prime_UTR |
| CACCTTAAGCAAGTTGTCGG+TGG | 0.622779 | 4_4:-4610638 | Msa0665220:three_prime_UTR |
| GAAGAGATGAAGAATCGTTG+TGG | 0.630399 | 4_4:+4613741 | None:intergenic |
| AGAGGACGATTATCATGGAG+GGG | 0.634551 | 4_4:+4610567 | None:intergenic |
| AAGAGAGCGGTTGAAATGAA+CGG | 0.635536 | 4_4:+4613673 | None:intergenic |
| TGCCTGAGTCTCTATCCACT+CGG | 0.637882 | 4_4:+4610659 | None:intergenic |
| GCCAAGATGCTAGACAGGAA+AGG | 0.659577 | 4_4:+4610533 | None:intergenic |
| TAAGAGGACGATTATCATGG+AGG | 0.660994 | 4_4:+4610565 | None:intergenic |
| GAAGTGGAGGAAGAAGAGAG+CGG | 0.663486 | 4_4:+4613660 | None:intergenic |
| GAGGAGTTGGTGATGCGGCG+CGG | 0.681777 | 4_4:+4613619 | None:intergenic |
| TCTATTCCTCCCATCCCATG+CGG | 0.708144 | 4_4:+4610896 | None:intergenic |
| GGGAGGAATAGACCAAACAA+GGG | 0.717910 | 4_4:-4610885 | Msa0665220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTATTATTTATAAGTT+AGG | - | chr4_4:4613365-4613384 | Msa0665220:intron | 10.0% |
| !! | GAATTATTATTTATAAGTTA+GGG | - | chr4_4:4613366-4613385 | Msa0665220:intron | 10.0% |
| !! | AATTATTATTTATAAGTTAG+GGG | - | chr4_4:4613367-4613386 | Msa0665220:intron | 10.0% |
| !!! | AATATAATTTGACTTTCTTT+TGG | - | chr4_4:4610808-4610827 | Msa0665220:three_prime_UTR | 15.0% |
| !! | AAGAATTAAGATAAAGTTAA+AGG | - | chr4_4:4611228-4611247 | Msa0665220:intron | 15.0% |
| !!! | TTTTGAATTATTATGATGTT+AGG | - | chr4_4:4611467-4611486 | Msa0665220:intron | 15.0% |
| !! | CTAGATTTATATCAAAATAA+GGG | + | chr4_4:4612815-4612834 | None:intergenic | 15.0% |
| !! | ACTAGATTTATATCAAAATA+AGG | + | chr4_4:4612816-4612835 | None:intergenic | 15.0% |
| !!! | TTATGATATTTTTCTAAATC+AGG | - | chr4_4:4613007-4613026 | Msa0665220:intron | 15.0% |
| !!! | TATGATATTTTTCTAAATCA+GGG | - | chr4_4:4613008-4613027 | Msa0665220:intron | 15.0% |
| !! | ATTATTATTTATAAGTTAGG+GGG | - | chr4_4:4613368-4613387 | Msa0665220:intron | 15.0% |
| !!! | ATTTTAGACAAGAAAATTTA+TGG | + | chr4_4:4613457-4613476 | None:intergenic | 15.0% |
| !! | AGTTTATGAATATCAATATA+TGG | - | chr4_4:4613492-4613511 | Msa0665220:intron | 15.0% |
| !!! | CCATTTTGATAACTAATAAA+TGG | + | chr4_4:4611189-4611208 | None:intergenic | 20.0% |
| !! | CCATTTATTAGTTATCAAAA+TGG | - | chr4_4:4611186-4611205 | Msa0665220:intron | 20.0% |
| !! | ACTTTATCTTAATTCTTAAG+CGG | + | chr4_4:4611225-4611244 | None:intergenic | 20.0% |
| !! | AATTAAGATAAAGTTAAAGG+TGG | - | chr4_4:4611231-4611250 | Msa0665220:intron | 20.0% |
| !!! | TTATTTTTGTACCTTTTCTA+AGG | - | chr4_4:4611521-4611540 | Msa0665220:intron | 20.0% |
| !!! | ATTTAGTTCCTTTGATAAAA+TGG | + | chr4_4:4611606-4611625 | None:intergenic | 20.0% |
| !! | ATTAAAGTGAAAACAAACAA+TGG | + | chr4_4:4611657-4611676 | None:intergenic | 20.0% |
| !!! | AATGAACTCTTAGTTTTTTA+AGG | - | chr4_4:4611774-4611793 | Msa0665220:intron | 20.0% |
| !!! | TAGTTTTTTAAGGATATGTT+TGG | - | chr4_4:4611784-4611803 | Msa0665220:intron | 20.0% |
| !!! | AGTTTTTTAAGGATATGTTT+GGG | - | chr4_4:4611785-4611804 | Msa0665220:intron | 20.0% |
| !!! | AAACATTTTCCATTTATGTT+TGG | + | chr4_4:4611905-4611924 | None:intergenic | 20.0% |
| !! | ATCTTGCAAAATACAAAATA+AGG | + | chr4_4:4612067-4612086 | None:intergenic | 20.0% |
| !!! | TAGAATGTAGATTTTATTGA+AGG | - | chr4_4:4612100-4612119 | Msa0665220:intron | 20.0% |
| !!! | AACTTTTAAAACTTATTCTC+GGG | + | chr4_4:4612140-4612159 | None:intergenic | 20.0% |
| !!! | GAACTTTTAAAACTTATTCT+CGG | + | chr4_4:4612141-4612160 | None:intergenic | 20.0% |
| !!! | TTATCACTCTCTTTTTTATT+CGG | - | chr4_4:4612844-4612863 | Msa0665220:intron | 20.0% |
| !! | GTTAACTTTACAATTAAAGA+GGG | + | chr4_4:4612945-4612964 | None:intergenic | 20.0% |
| !! | AGTTAACTTTACAATTAAAG+AGG | + | chr4_4:4612946-4612965 | None:intergenic | 20.0% |
| !! | TTTAATTGTAAAGTTAACTG+AGG | - | chr4_4:4612947-4612966 | Msa0665220:intron | 20.0% |
| !! | TTAATTGTAAAGTTAACTGA+GGG | - | chr4_4:4612948-4612967 | Msa0665220:intron | 20.0% |
| !!! | TCTATCTTGAAATTTTGATA+AGG | + | chr4_4:4613211-4613230 | None:intergenic | 20.0% |
| !! | TATGAATATCAATATATGGT+TGG | - | chr4_4:4613496-4613515 | Msa0665220:intron | 20.0% |
| ! | ACAAGAATTAGAATAGTTTG+TGG | - | chr4_4:4610782-4610801 | Msa0665220:three_prime_UTR | 25.0% |
| !! | TTTCAAGTGATATTTATGTG+TGG | + | chr4_4:4610881-4610900 | None:intergenic | 25.0% |
| ! | ATTCGTAACGGTTAAATAAA+AGG | - | chr4_4:4610997-4611016 | Msa0665220:intron | 25.0% |
| ! | TTCGTAACGGTTAAATAAAA+GGG | - | chr4_4:4610998-4611017 | Msa0665220:intron | 25.0% |
| !!! | CTATGAGCTTTTATTTTCAA+AGG | - | chr4_4:4611109-4611128 | Msa0665220:intron | 25.0% |
| !! | TTATTTTCAAAGGATGACAT+CGG | - | chr4_4:4611119-4611138 | Msa0665220:intron | 25.0% |
| !! | TGATTTCAAGTAATGATTCA+TGG | - | chr4_4:4611159-4611178 | Msa0665220:intron | 25.0% |
| ! | CTTTATCTTAATTCTTAAGC+GGG | + | chr4_4:4611224-4611243 | None:intergenic | 25.0% |
| ! | ATAAAGTTAAAGGTGGAATT+TGG | - | chr4_4:4611238-4611257 | Msa0665220:intron | 25.0% |
| !!! | TAGAAAGTATTGAGAAATAG+CGG | - | chr4_4:4611346-4611365 | Msa0665220:intron | 25.0% |
| ! | TTCAAAATTATTCCATTCCA+TGG | + | chr4_4:4611454-4611473 | None:intergenic | 25.0% |
| ! | GAATTATTATGATGTTAGGT+TGG | - | chr4_4:4611471-4611490 | Msa0665220:intron | 25.0% |
| !! | ATGGAAAACCATTTTATCAA+AGG | - | chr4_4:4611595-4611614 | Msa0665220:intron | 25.0% |
| !!! | GCTAGTTAGATTTTTTGAAA+TGG | + | chr4_4:4611860-4611879 | None:intergenic | 25.0% |
| !! | TTTTCCATTTATGTTTGGAT+TGG | + | chr4_4:4611900-4611919 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAACGAAAGAAT+AGG | - | chr4_4:4612162-4612181 | Msa0665220:intron | 25.0% |
| !! | AGAAAATAACAAGCATTGTA+TGG | + | chr4_4:4612199-4612218 | None:intergenic | 25.0% |
| !! | ATTTTCTGACAATAAGTCTT+TGG | - | chr4_4:4612212-4612231 | Msa0665220:intron | 25.0% |
| ! | AAGGATACTCTAATTCATTA+TGG | - | chr4_4:4612242-4612261 | Msa0665220:intron | 25.0% |
| !!! | ATTTTAGTTGAAACGATCTT+TGG | - | chr4_4:4612366-4612385 | Msa0665220:intron | 25.0% |
| !! | TGTTGATCTTTTATTCTTGT+TGG | - | chr4_4:4612665-4612684 | Msa0665220:intron | 25.0% |
| ! | TTCTACTCAATAATTATCCA+AGG | + | chr4_4:4612787-4612806 | None:intergenic | 25.0% |
| ! | AAAAGAGAGTGATAATTCAA+AGG | + | chr4_4:4612839-4612858 | None:intergenic | 25.0% |
| ! | TATTACATTTCGATAGTTCA+GGG | + | chr4_4:4612871-4612890 | None:intergenic | 25.0% |
| ! | TTATTACATTTCGATAGTTC+AGG | + | chr4_4:4612872-4612891 | None:intergenic | 25.0% |
| ! | TCAAGTGTAAATCTTCAATT+TGG | + | chr4_4:4613066-4613085 | None:intergenic | 25.0% |
| !!! | ACAAGATCTTTTTTCTTTTG+AGG | - | chr4_4:4613168-4613187 | Msa0665220:intron | 25.0% |
| ! | TCTAATGGAATTATACTCAA+TGG | - | chr4_4:4613589-4613608 | Msa0665220:CDS | 25.0% |
| !! | AGTTCAGTTGATTCATTTTC+CGG | + | chr4_4:4610612-4610631 | None:intergenic | 30.0% |
| AATGAATCAACTGAACTTCA+AGG | - | chr4_4:4610615-4610634 | Msa0665220:three_prime_UTR | 30.0% | |
| AACAGATTCACACAACATAA+GGG | + | chr4_4:4610757-4610776 | None:intergenic | 30.0% | |
| AAACAGATTCACACAACATA+AGG | + | chr4_4:4610758-4610777 | None:intergenic | 30.0% | |
| TTGGTTGAATTGAACTTCAA+AGG | - | chr4_4:4610827-4610846 | Msa0665220:three_prime_UTR | 30.0% | |
| TGGTTGAATTGAACTTCAAA+GGG | - | chr4_4:4610828-4610847 | Msa0665220:three_prime_UTR | 30.0% | |
| TATCACTTGAAACTTCTACT+AGG | - | chr4_4:4610889-4610908 | Msa0665220:CDS | 30.0% | |
| !! | TTTCTAGTTTCTACTACCTT+GGG | + | chr4_4:4610929-4610948 | None:intergenic | 30.0% |
| ! | TTAAAGGTGGAATTTGGTTT+AGG | - | chr4_4:4611244-4611263 | Msa0665220:intron | 30.0% |
| CCTCTATAATAACAACACAA+TGG | + | chr4_4:4611271-4611290 | None:intergenic | 30.0% | |
| ! | CCATTGTGTTGTTATTATAG+AGG | - | chr4_4:4611268-4611287 | Msa0665220:intron | 30.0% |
| !! | TTGTACCTTTTCTAAGGATT+CGG | - | chr4_4:4611527-4611546 | Msa0665220:intron | 30.0% |
| ACTGAAACTGTTAACAGATA+TGG | - | chr4_4:4611563-4611582 | Msa0665220:intron | 30.0% | |
| CTGAAACTGTTAACAGATAT+GGG | - | chr4_4:4611564-4611583 | Msa0665220:intron | 30.0% | |
| TGAAACTGTTAACAGATATG+GGG | - | chr4_4:4611565-4611584 | Msa0665220:intron | 30.0% | |
| ACAGATATGGGGTATATAAA+TGG | - | chr4_4:4611576-4611595 | Msa0665220:intron | 30.0% | |
| TGAAAACAAACAATGGAAAC+AGG | + | chr4_4:4611650-4611669 | None:intergenic | 30.0% | |
| !! | TTTTAAGGATATGTTTGGGT+TGG | - | chr4_4:4611789-4611808 | Msa0665220:intron | 30.0% |
| ! | ATAAGTCTTTGGCTCATAAA+AGG | - | chr4_4:4612223-4612242 | Msa0665220:intron | 30.0% |
| TTGAAAAGTCGCTATTGTTA+CGG | + | chr4_4:4612504-4612523 | None:intergenic | 30.0% | |
| ! | TTTCAAATTTTGCTACACTC+TGG | - | chr4_4:4612518-4612537 | Msa0665220:intron | 30.0% |
| ! | GTGGTATTGAATAAAAACGA+AGG | + | chr4_4:4612759-4612778 | None:intergenic | 30.0% |
| ATAATTATCCAAGGACATTG+TGG | + | chr4_4:4612778-4612797 | None:intergenic | 30.0% | |
| GATGATTTGAAAATAGCGTA+AGG | - | chr4_4:4612979-4612998 | Msa0665220:intron | 30.0% | |
| CTATTATTCTCTCTCCTATT+TGG | + | chr4_4:4613035-4613054 | None:intergenic | 30.0% | |
| CAAATAGGAGAGAGAATAAT+AGG | - | chr4_4:4613033-4613052 | Msa0665220:intron | 30.0% | |
| ATACACAGTTTCTATCTGTT+AGG | - | chr4_4:4613094-4613113 | Msa0665220:intron | 30.0% | |
| !!! | CTATATTTTGATCCCTTGTT+TGG | + | chr4_4:4613309-4613328 | None:intergenic | 30.0% |
| ATAGATTACAATCGCTGATA+TGG | + | chr4_4:4613671-4613690 | None:intergenic | 30.0% | |
| ATCTATTGATGCTCTCTATT+TGG | - | chr4_4:4613685-4613704 | Msa0665220:CDS | 30.0% | |
| TCTATTGATGCTCTCTATTT+GGG | - | chr4_4:4613686-4613705 | Msa0665220:CDS | 30.0% | |
| !! | TAACTTGTACCTATTGGTTT+GGG | + | chr4_4:4613730-4613749 | None:intergenic | 30.0% |
| !! | TTAACTTGTACCTATTGGTT+TGG | + | chr4_4:4613731-4613750 | None:intergenic | 30.0% |
| GATTTACAAGTTCCATTTCG+AGG | + | chr4_4:4610416-4610435 | None:intergenic | 35.0% | |
| ACTTCAAAGGGATAAGAGTT+AGG | - | chr4_4:4610840-4610859 | Msa0665220:three_prime_UTR | 35.0% | |
| !! | GTTTCTAGTTTCTACTACCT+TGG | + | chr4_4:4610930-4610949 | None:intergenic | 35.0% |
| ! | TTCTTAAGCGGGTTCTATTA+TGG | + | chr4_4:4611213-4611232 | None:intergenic | 35.0% |
| TTGAGAAATAGCGGCTATAA+CGG | - | chr4_4:4611355-4611374 | Msa0665220:intron | 35.0% | |
| AATTGACAATATTGCGTCCA+TGG | - | chr4_4:4611434-4611453 | Msa0665220:intron | 35.0% | |
| TGTTTCCGAATCCTTAGAAA+AGG | + | chr4_4:4611535-4611554 | None:intergenic | 35.0% | |
| !! | TTTTCTAAGGATTCGGAAAC+AGG | - | chr4_4:4611534-4611553 | Msa0665220:intron | 35.0% |
| GTGGAAAACTGTGTTAACAT+TGG | - | chr4_4:4611738-4611757 | Msa0665220:intron | 35.0% | |
| ACCACCAATCCAAACATAAA+TGG | - | chr4_4:4611893-4611912 | Msa0665220:intron | 35.0% | |
| ! | TCCATTTATGTTTGGATTGG+TGG | + | chr4_4:4611897-4611916 | None:intergenic | 35.0% |
| ACTAAGCGCAAATAATGTTG+TGG | + | chr4_4:4611986-4612005 | None:intergenic | 35.0% | |
| ATCACTGAATGTCAACATGA+TGG | + | chr4_4:4612019-4612038 | None:intergenic | 35.0% | |
| ACCATAAAGTGACTTTGTCT+TGG | + | chr4_4:4612338-4612357 | None:intergenic | 35.0% | |
| TATACTACACCTGACAAGAA+TGG | + | chr4_4:4612560-4612579 | None:intergenic | 35.0% | |
| ! | TGGATTTTGTATTCTAGCCT+CGG | - | chr4_4:4612685-4612704 | Msa0665220:intron | 35.0% |
| ATTCAATACCACAATGTCCT+TGG | - | chr4_4:4612767-4612786 | Msa0665220:intron | 35.0% | |
| AGAGACTAATTTGATTGCTC+GGG | + | chr4_4:4612911-4612930 | None:intergenic | 35.0% | |
| CAGAGACTAATTTGATTGCT+CGG | + | chr4_4:4612912-4612931 | None:intergenic | 35.0% | |
| TTCTAAATCAGGGACCAAAT+AGG | - | chr4_4:4613018-4613037 | Msa0665220:intron | 35.0% | |
| GTGTTTATGCTTCTATAGCA+AGG | - | chr4_4:4613127-4613146 | Msa0665220:intron | 35.0% | |
| CTATAGCAAGGTGTAACTTT+CGG | - | chr4_4:4613139-4613158 | Msa0665220:intron | 35.0% | |
| !!! | TCTTTTTTCTTTTGAGGAGC+AGG | - | chr4_4:4613174-4613193 | Msa0665220:intron | 35.0% |
| ! | TCTGGATGACTCTATTCTTT+TGG | - | chr4_4:4613256-4613275 | Msa0665220:intron | 35.0% |
| ! | CTGGATGACTCTATTCTTTT+GGG | - | chr4_4:4613257-4613276 | Msa0665220:intron | 35.0% |
| GGGACAAAATTACAAAGCAA+AGG | - | chr4_4:4613388-4613407 | Msa0665220:intron | 35.0% | |
| ! | GTCTAAAATTACTCGTGAAG+AGG | - | chr4_4:4613468-4613487 | Msa0665220:intron | 35.0% |
| CCATTAGAAACCTTGTGTTT+GGG | + | chr4_4:4613577-4613596 | None:intergenic | 35.0% | |
| TCCATTAGAAACCTTGTGTT+TGG | + | chr4_4:4613578-4613597 | None:intergenic | 35.0% | |
| TACTAAGAGGACGATTATCA+TGG | + | chr4_4:4613620-4613639 | None:intergenic | 35.0% | |
| GGAAAGGTAGTTATACTAAG+AGG | + | chr4_4:4613633-4613652 | None:intergenic | 35.0% | |
| GAAGAGATGAAGAATCGTTG+TGG | + | chr4_4:4610441-4610460 | None:intergenic | 40.0% | |
| GAAAGTGAAGAAGAAGGAGA+AGG | + | chr4_4:4610477-4610496 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTGAAGAAGA+AGG | + | chr4_4:4610483-4610502 | None:intergenic | 40.0% | |
| AAGAGAGCGGTTGAAATGAA+CGG | + | chr4_4:4610509-4610528 | None:intergenic | 40.0% | |
| ! | TTGATTCATTTTCCGGTGGT+GGG | + | chr4_4:4610605-4610624 | None:intergenic | 40.0% |
| !! | TCAGTTGATTCATTTTCCGG+TGG | + | chr4_4:4610609-4610628 | None:intergenic | 40.0% |
| ! | GACAGTGACTTGATTCGTAA+CGG | - | chr4_4:4610985-4611004 | Msa0665220:CDS | 40.0% |
| ! | TATGCTTTCTGACACCGATT+AGG | - | chr4_4:4611056-4611075 | Msa0665220:intron | 40.0% |
| TCTATAGCGCTATTGCATAG+CGG | - | chr4_4:4611292-4611311 | Msa0665220:intron | 40.0% | |
| ACAATATTGCGTCCATGGAA+TGG | - | chr4_4:4611439-4611458 | Msa0665220:intron | 40.0% | |
| !! | GTCGCTTGTTTTCACTTTAG+TGG | - | chr4_4:4611719-4611738 | Msa0665220:intron | 40.0% |
| !! | TAAGGATATGTTTGGGTTGG+TGG | - | chr4_4:4611792-4611811 | Msa0665220:intron | 40.0% |
| !! | TATGTTTGGGTTGGTGGTAT+TGG | - | chr4_4:4611798-4611817 | Msa0665220:intron | 40.0% |
| !! | ATGTTTGGGTTGGTGGTATT+GGG | - | chr4_4:4611799-4611818 | Msa0665220:intron | 40.0% |
| GAATGTCAACATGATGGTCA+CGG | + | chr4_4:4612013-4612032 | None:intergenic | 40.0% | |
| !! | GGTTTTTGTATCGACAGATG+TGG | + | chr4_4:4612307-4612326 | None:intergenic | 40.0% |
| !! | GACTTTGTCTTGGCTAGTTT+GGG | + | chr4_4:4612328-4612347 | None:intergenic | 40.0% |
| ! | TGACTTTGTCTTGGCTAGTT+TGG | + | chr4_4:4612329-4612348 | None:intergenic | 40.0% |
| ! | GCCAAGACAAAGTCACTTTA+TGG | - | chr4_4:4612334-4612353 | Msa0665220:intron | 40.0% |
| AGTCGCTATTGTTACGGAAT+AGG | + | chr4_4:4612498-4612517 | None:intergenic | 40.0% | |
| !!! | TGCTACACTCTGGTCTTTTT+TGG | - | chr4_4:4612528-4612547 | Msa0665220:intron | 40.0% |
| ! | GGATTTTGTATTCTAGCCTC+GGG | - | chr4_4:4612686-4612705 | Msa0665220:intron | 40.0% |
| ! | TGATTGCTCGGGAATAGTTT+TGG | + | chr4_4:4612900-4612919 | None:intergenic | 40.0% |
| ! | CTATCTGTTAGGCTTTAGTG+TGG | - | chr4_4:4613105-4613124 | Msa0665220:intron | 40.0% |
| ! | TCTTCTTCGCTGTTCTTTTC+TGG | - | chr4_4:4613238-4613257 | Msa0665220:intron | 40.0% |
| CTCTATCTTTCCCAAACACA+AGG | - | chr4_4:4613564-4613583 | Msa0665220:intron | 40.0% | |
| CCCAAACACAAGGTTTCTAA+TGG | - | chr4_4:4613574-4613593 | Msa0665220:CDS | 40.0% | |
| AAGAGGACGATTATCATGGA+GGG | + | chr4_4:4613616-4613635 | None:intergenic | 40.0% | |
| TAAGAGGACGATTATCATGG+AGG | + | chr4_4:4613617-4613636 | None:intergenic | 40.0% | |
| TTGGGCCATTTGATTGTCTA+AGG | - | chr4_4:4613704-4613723 | Msa0665220:CDS | 40.0% | |
| TTGGGCCTTAGACAATCAAA+TGG | + | chr4_4:4613712-4613731 | None:intergenic | 40.0% | |
| !! | CGTGCTTAACTTGTACCTAT+TGG | + | chr4_4:4613736-4613755 | None:intergenic | 40.0% |
| CAACCTGAAATGCCTCGAAA+TGG | - | chr4_4:4610401-4610420 | Msa0665220:three_prime_UTR | 45.0% | |
| ! | GTTCCATTTCGAGGCATTTC+AGG | + | chr4_4:4610407-4610426 | None:intergenic | 45.0% |
| !! | GTTGATTCATTTTCCGGTGG+TGG | + | chr4_4:4610606-4610625 | None:intergenic | 45.0% |
| GGACTCACAATATTCACCCA+AGG | - | chr4_4:4610910-4610929 | Msa0665220:CDS | 45.0% | |
| GAGTGAGACAGTGACCTAAT+CGG | + | chr4_4:4611073-4611092 | None:intergenic | 45.0% | |
| TGCTAAGCACAGTTGTGTAG+CGG | - | chr4_4:4611378-4611397 | Msa0665220:intron | 45.0% | |
| TATCGACAGATGTGGCAAGT+TGG | + | chr4_4:4612299-4612318 | None:intergenic | 45.0% | |
| TTGTCAAATAGCAGCTACCG+AGG | + | chr4_4:4612459-4612478 | None:intergenic | 45.0% | |
| TGGACAACACCATTCTTGTC+AGG | - | chr4_4:4612548-4612567 | Msa0665220:intron | 45.0% | |
| CATATAGTATGCATGTCCCG+AGG | + | chr4_4:4612705-4612724 | None:intergenic | 45.0% | |
| ! | TATTCTTTTGGGCTTCCGCA+TGG | - | chr4_4:4613268-4613287 | Msa0665220:intron | 45.0% |
| ! | ATTCTTTTGGGCTTCCGCAT+GGG | - | chr4_4:4613269-4613288 | Msa0665220:intron | 45.0% |
| TGGGAGGAATAGACCAAACA+AGG | - | chr4_4:4613293-4613312 | Msa0665220:intron | 45.0% | |
| GGGAGGAATAGACCAAACAA+GGG | - | chr4_4:4613294-4613313 | Msa0665220:intron | 45.0% | |
| ! | CAATATATGGTTGGTCCGAG+TGG | - | chr4_4:4613505-4613524 | Msa0665220:intron | 45.0% |
| AGGCACCTTAAGCAAGTTGT+CGG | - | chr4_4:4613538-4613557 | Msa0665220:intron | 45.0% | |
| AGAGGACGATTATCATGGAG+GGG | + | chr4_4:4613615-4613634 | None:intergenic | 45.0% | |
| ACCTTTCCTGTCTAGCATCT+TGG | - | chr4_4:4613645-4613664 | Msa0665220:CDS | 45.0% | |
| ATATGGCCAAGATGCTAGAC+AGG | + | chr4_4:4613654-4613673 | None:intergenic | 45.0% | |
| ! | TGTCTAAGGCCCAAACCAAT+AGG | - | chr4_4:4613718-4613737 | Msa0665220:CDS | 45.0% |
| AGAAGGAGAAGGAGAGAGAG+TGG | + | chr4_4:4610466-4610485 | None:intergenic | 50.0% | |
| GAAGTGGAGGAAGAAGAGAG+CGG | + | chr4_4:4610522-4610541 | None:intergenic | 50.0% | |
| !!! | TTCATTTTCCGGTGGTGGGT+CGG | + | chr4_4:4610601-4610620 | None:intergenic | 50.0% |
| ACTGTCTCACTCACGAGAAC+AGG | - | chr4_4:4611081-4611100 | Msa0665220:intron | 50.0% | |
| CTGTCTCACTCACGAGAACA+GGG | - | chr4_4:4611082-4611101 | Msa0665220:intron | 50.0% | |
| !! | TTTGGGTTGGTGGTATTGGG+TGG | - | chr4_4:4611802-4611821 | Msa0665220:intron | 50.0% |
| TCAAATAGCAGCTACCGAGG+CGG | + | chr4_4:4612456-4612475 | None:intergenic | 50.0% | |
| TCTATTCCTCCCATCCCATG+CGG | + | chr4_4:4613286-4613305 | None:intergenic | 50.0% | |
| TGCCTGAGTCTCTATCCACT+CGG | + | chr4_4:4613523-4613542 | None:intergenic | 50.0% | |
| CACCTTAAGCAAGTTGTCGG+TGG | - | chr4_4:4613541-4613560 | Msa0665220:intron | 50.0% | |
| ! | AGCCACCGACAACTTGCTTA+AGG | + | chr4_4:4613546-4613565 | None:intergenic | 50.0% |
| GCCAAGATGCTAGACAGGAA+AGG | + | chr4_4:4613649-4613668 | None:intergenic | 50.0% | |
| AGGAGAAGGAGAGAGAGTGG+TGG | + | chr4_4:4610463-4610482 | None:intergenic | 55.0% | |
| AAGACGACGGAGAGAAGTGG+AGG | + | chr4_4:4610535-4610554 | None:intergenic | 55.0% | |
| !! | TGGTGGAGGAGTTGGTGATG+CGG | + | chr4_4:4610568-4610587 | None:intergenic | 55.0% |
| !! | TCATGTGGTGGTGGAGGAGT+TGG | + | chr4_4:4610576-4610595 | None:intergenic | 55.0% |
| !!! | TCATTTTCCGGTGGTGGGTC+GGG | + | chr4_4:4610600-4610619 | None:intergenic | 55.0% |
| ! | TTTTGGGCTTCCGCATGGGA+TGG | - | chr4_4:4613273-4613292 | Msa0665220:intron | 55.0% |
| TTTGGGCTTCCGCATGGGAT+GGG | - | chr4_4:4613274-4613293 | Msa0665220:intron | 55.0% | |
| GTCCGAGTGGATAGAGACTC+AGG | - | chr4_4:4613518-4613537 | Msa0665220:intron | 55.0% | |
| GCGAAGACGACGGAGAGAAG+TGG | + | chr4_4:4610538-4610557 | None:intergenic | 60.0% | |
| !!! | CATTTTCCGGTGGTGGGTCG+GGG | + | chr4_4:4610599-4610618 | None:intergenic | 60.0% |
| GCTCCAGTGCTATACCGCCT+CGG | - | chr4_4:4612439-4612458 | Msa0665220:intron | 60.0% | |
| CTACCGAGGCGGTATAGCAC+TGG | + | chr4_4:4612445-4612464 | None:intergenic | 60.0% | |
| !! | GAGGAGTTGGTGATGCGGCG+CGG | + | chr4_4:4610563-4610582 | None:intergenic | 65.0% |
| !! | TCGGGGTCATGTGGTGGTGG+AGG | + | chr4_4:4610582-4610601 | None:intergenic | 65.0% |
| ACATGACCCCGACCCACCAC+CGG | - | chr4_4:4610590-4610609 | Msa0665220:three_prime_UTR | 65.0% | |
| GGGTCGGGGTCATGTGGTGG+TGG | + | chr4_4:4610585-4610604 | None:intergenic | 70.0% | |
| GGTGGGTCGGGGTCATGTGG+TGG | + | chr4_4:4610588-4610607 | None:intergenic | 70.0% | |
| !! | GGTGGTGGGTCGGGGTCATG+TGG | + | chr4_4:4610591-4610610 | None:intergenic | 70.0% |
| GGGCTTCCGCATGGGATGGG+AGG | - | chr4_4:4613277-4613296 | Msa0665220:intron | 70.0% | |
| CGGCGCGGCAGCGAAGACGA+CGG | + | chr4_4:4610548-4610567 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4610374 | 4613827 | 4610374 | ID=Msa0665220;Name=Msa0665220 |
| chr4_4 | mRNA | 4610374 | 4613827 | 4610374 | ID=Msa0665220-mRNA-1;Parent=Msa0665220;Name=Msa0665220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|2|492|118 |
| chr4_4 | exon | 4610374 | 4611005 | 4610374 | ID=Msa0665220-mRNA-1:exon:1553;Parent=Msa0665220-mRNA-1 |
| chr4_4 | exon | 4613565 | 4613827 | 4613565 | ID=Msa0665220-mRNA-1:exon:1552;Parent=Msa0665220-mRNA-1 |
| chr4_4 | five_prime_UTR | 4613782 | 4613827 | 4613782 | ID=Msa0665220-mRNA-1:five_prime_utr;Parent=Msa0665220-mRNA-1 |
| chr4_4 | CDS | 4613565 | 4613781 | 4613565 | ID=Msa0665220-mRNA-1:cds;Parent=Msa0665220-mRNA-1 |
| chr4_4 | CDS | 4610866 | 4611005 | 4610866 | ID=Msa0665220-mRNA-1:cds;Parent=Msa0665220-mRNA-1 |
| chr4_4 | three_prime_UTR | 4610374 | 4610865 | 4610374 | ID=Msa0665220-mRNA-1:three_prime_utr;Parent=Msa0665220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
