AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091090 MtrunA17_Chr1g0211411 96.923 195 5 1 40 234 38 231 8.64e-135 378
Msa0091090 MtrunA17_Chr4g0023841 55.556 54 24 0 143 196 89 142 1.46e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091090 AT5G27280.1 55.959 193 61 4 46 233 39 212 5.98e-65 201
Msa0091090 AT1G68730.1 55.000 60 27 0 137 196 96 155 3.39e-16 73.9

Find 68 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCACTTGAACTTGTTTC+AGG 0.209481 1_2:-73208605 Msa0091090:CDS
ATGAGTGAATTGCCAGCTTA+TGG 0.279283 1_2:-73208467 Msa0091090:exon
CTTCATCTTGTGAGATGGTT+AGG 0.294170 1_2:-73208216 Msa0091090:three_prime_UTR
CTGCCTCTGATCATCATATA+AGG 0.303523 1_2:-73208432 Msa0091090:three_prime_UTR
AGAGGATGGACAACAGGTTC+TGG 0.304476 1_2:-73209634 Msa0091090:CDS
TCCTTGCCAACAGCAGGAAC+AGG 0.348441 1_2:+73209598 None:intergenic
GTTGGCAAGGATGGCCAATC+TGG 0.368867 1_2:-73209586 Msa0091090:CDS
TACATTGGAAAGAGGGGAAA+TGG 0.383769 1_2:+73209816 None:intergenic
GTTCCTGCTGTTGGCAAGGA+TGG 0.384950 1_2:-73209595 Msa0091090:CDS
TGGCAATTCACTCATGTAAC+GGG 0.396746 1_2:+73208475 None:intergenic
CCCTGTTCCTGCTGTTGGCA+AGG 0.400986 1_2:-73209599 Msa0091090:CDS
TGATCTCAAGTTCAGGTTCA+TGG 0.426042 1_2:-73208530 Msa0091090:CDS
TCAGGATGCGGCGATGGGAC+TGG 0.430291 1_2:-73209677 Msa0091090:intron
AGCGATGAGCATCCTTCGCC+TGG 0.430343 1_2:+73209516 None:intergenic
AAGGTTGAAGTTGAGTTCGT+TGG 0.430732 1_2:+73209867 None:intergenic
AAACAGCGATTAGCGGGAAC+TGG 0.436587 1_2:+73209841 None:intergenic
TGTATTGTTGTGTTTGTGTT+GGG 0.441366 1_2:-73210236 None:intergenic
CTTCTCTTCATCTTGTGAGA+TGG 0.447042 1_2:-73208221 Msa0091090:three_prime_UTR
GATGGGATGATCTCAAGTTC+AGG 0.447144 1_2:-73208537 Msa0091090:CDS
TCTTGTTGAAGAAGGGAAGA+TGG 0.460295 1_2:+73210098 None:intergenic
AAAATATATGCTCCATAAGC+TGG 0.465894 1_2:+73208455 None:intergenic
GTGGGATCAGGATGCGGCGA+TGG 0.473920 1_2:-73209683 Msa0091090:intron
GAGGATGGACAACAGGTTCT+GGG 0.476565 1_2:-73209633 Msa0091090:CDS
ACAGGTAGAGGATGGACAAC+AGG 0.485934 1_2:-73209640 Msa0091090:CDS
GTGTATTGTTGTGTTTGTGT+TGG 0.491026 1_2:-73210237 None:intergenic
AGTAGTTCGCTGGCCACAAA+TGG 0.495726 1_2:+73209483 None:intergenic
TGGCCATCCTTGCCAACAGC+AGG 0.511703 1_2:+73209592 None:intergenic
CTGGTGTTGAGTGCAGCAAC+AGG 0.517261 1_2:-73209658 Msa0091090:CDS
TTGAGTGCAGCAACAGGTAG+AGG 0.519099 1_2:-73209652 Msa0091090:CDS
AGAGGGTAGACGAAAGTGAA+AGG 0.519884 1_2:+73210032 None:intergenic
GATGATGTTCTTGTTGAAGA+AGG 0.523407 1_2:+73210090 None:intergenic
TGGGATCAGGATGCGGCGAT+GGG 0.524036 1_2:-73209682 Msa0091090:intron
ATGGAGAAACAGCGATTAGC+GGG 0.527617 1_2:+73209835 None:intergenic
TTGGCAAGGATGGCCAATCT+GGG 0.529425 1_2:-73209585 Msa0091090:CDS
AATCCTCATGCTTACACTGA+TGG 0.541011 1_2:-73209451 Msa0091090:CDS
AAATATTGTCAGTCCCAGAT+TGG 0.547211 1_2:+73209572 None:intergenic
GAAGGGAAGATGGAGAAAGA+AGG 0.549957 1_2:+73210108 None:intergenic
GATTAGCGGGAACTGGAGAA+AGG 0.553924 1_2:+73209848 None:intergenic
CACTCTTCACTAAATCTCCC+AGG 0.555459 1_2:-73209534 Msa0091090:CDS
TTAAGTATAAAGGTCCTGGA+TGG 0.555752 1_2:-73208555 Msa0091090:CDS
GAGAATCAATCTGATGATGA+TGG 0.556875 1_2:-73210169 Msa0091090:exon
ATGATGTTCTTGTTGAAGAA+GGG 0.560562 1_2:+73210091 None:intergenic
CTGGCAATTCACTCATGTAA+CGG 0.562439 1_2:+73208474 None:intergenic
TCACTAAATCTCCCAGGCGA+AGG 0.574635 1_2:-73209528 Msa0091090:CDS
GAAGAGTGACCATGGGAAAG+TGG 0.574914 1_2:+73209549 None:intergenic
AACTTGAGATCATCCCATCC+AGG 0.575509 1_2:+73208541 None:intergenic
TAAGTATAAAGGTCCTGGAT+GGG 0.576355 1_2:-73208554 Msa0091090:CDS
ACAATATTTCCACTTTCCCA+TGG 0.577693 1_2:-73209558 Msa0091090:CDS
ACATTACATACATTGGAAAG+AGG 0.577849 1_2:+73209808 None:intergenic
CCTTGCCAACAGCAGGAACA+GGG 0.581470 1_2:+73209599 None:intergenic
CATTACATACATTGGAAAGA+GGG 0.582616 1_2:+73209809 None:intergenic
GTGCAGCAACAGGTAGAGGA+TGG 0.602472 1_2:-73209648 Msa0091090:CDS
ATTTAGTGAAGAGTGACCAT+GGG 0.605907 1_2:+73209542 None:intergenic
GATTTAGTGAAGAGTGACCA+TGG 0.607466 1_2:+73209541 None:intergenic
ATGGACAACAGGTTCTGGGA+TGG 0.609246 1_2:-73209629 Msa0091090:CDS
ACAACAGGTTCTGGGATGGA+AGG 0.611576 1_2:-73209625 Msa0091090:CDS
TAATAGCGCGAGTAGTTCGC+TGG 0.613634 1_2:+73209473 None:intergenic
AGAATACGGACGCTTAGAAG+AGG 0.614308 1_2:+73210014 None:intergenic
CAATGCGTATCATAAGCTTG+TGG 0.615319 1_2:-73208626 Msa0091090:CDS
GAATACGGACGCTTAGAAGA+GGG 0.616215 1_2:+73210015 None:intergenic
ATTACATACATTGGAAAGAG+GGG 0.621264 1_2:+73209810 None:intergenic
GCGATGAGCATCCTTCGCCT+GGG 0.627050 1_2:+73209517 None:intergenic
ATTCCTTATATGATGATCAG+AGG 0.628474 1_2:+73208429 None:intergenic
AATGGAGAAACAGCGATTAG+CGG 0.635500 1_2:+73209834 None:intergenic
TTGCCAACAGCAGGAACAGG+GGG 0.652495 1_2:+73209601 None:intergenic
GTGCCATCAGTGTAAGCATG+AGG 0.652803 1_2:+73209448 None:intergenic
CTTGCCAACAGCAGGAACAG+GGG 0.682731 1_2:+73209600 None:intergenic
GGCAATTCACTCATGTAACG+GGG 0.702863 1_2:+73208476 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGTAAAATTAATGA+TGG + chr1_2:73208466-73208485 None:intergenic 10.0%
!!! TATATTTTTTTTTTCATTTC+AGG - chr1_2:73208482-73208501 Msa0091090:exon 10.0%
!! AATCATGTTTAAATTATAAA+TGG + chr1_2:73209247-73209266 None:intergenic 10.0%
!!! TTATAATTTAAACATGATTT+TGG - chr1_2:73209248-73209267 Msa0091090:intron 10.0%
!! TATAATAGTAAAATTAATGA+TGG + chr1_2:73208466-73208485 None:intergenic 10.0%
!!! TATATTTTTTTTTTCATTTC+AGG - chr1_2:73208482-73208501 Msa0091090:exon 10.0%
!! AATCATGTTTAAATTATAAA+TGG + chr1_2:73209247-73209266 None:intergenic 10.0%
!!! TTATAATTTAAACATGATTT+TGG - chr1_2:73209248-73209267 Msa0091090:intron 10.0%
!! ATATAAAAATAGGGAAATTA+GGG + chr1_2:73208644-73208663 None:intergenic 15.0%
!! TAAATTCTGATTATAATTTG+TGG - chr1_2:73208714-73208733 Msa0091090:intron 15.0%
!!! AAATTCTGATTATAATTTGT+GGG - chr1_2:73208715-73208734 Msa0091090:intron 15.0%
!!! AATTCAAGTTTTAAGTATAA+AGG - chr1_2:73209851-73209870 Msa0091090:CDS 15.0%
!! ATATAAAAATAGGGAAATTA+GGG + chr1_2:73208644-73208663 None:intergenic 15.0%
!! TAAATTCTGATTATAATTTG+TGG - chr1_2:73208714-73208733 Msa0091090:intron 15.0%
!!! AAATTCTGATTATAATTTGT+GGG - chr1_2:73208715-73208734 Msa0091090:intron 15.0%
!!! AATTCAAGTTTTAAGTATAA+AGG - chr1_2:73209851-73209870 Msa0091090:CDS 15.0%
!! CATATAAAAATAGGGAAATT+AGG + chr1_2:73208645-73208664 None:intergenic 20.0%
!! ATCCATCACATATAAAAATA+GGG + chr1_2:73208653-73208672 None:intergenic 20.0%
!! AAAAATTTCATTGCAAGAAA+GGG - chr1_2:73209646-73209665 Msa0091090:CDS 20.0%
!! CATATAAAAATAGGGAAATT+AGG + chr1_2:73208645-73208664 None:intergenic 20.0%
!! ATCCATCACATATAAAAATA+GGG + chr1_2:73208653-73208672 None:intergenic 20.0%
!! AAAAATTTCATTGCAAGAAA+GGG - chr1_2:73209646-73209665 Msa0091090:CDS 20.0%
!!! TTCCCTATTTTTATATGTGA+TGG - chr1_2:73208648-73208667 Msa0091090:intron 25.0%
! CATCCATCACATATAAAAAT+AGG + chr1_2:73208654-73208673 None:intergenic 25.0%
!!! TGTTTTTGTTCAGGTAATAA+TGG - chr1_2:73208991-73209010 Msa0091090:intron 25.0%
!! TCAGGTAATAATGGTTTTTA+AGG - chr1_2:73209000-73209019 Msa0091090:intron 25.0%
!!! ATAATGGTTTTTAAGGAAGT+AGG - chr1_2:73209007-73209026 Msa0091090:intron 25.0%
! ATTATTTATGTGAACTGTCA+TGG - chr1_2:73209141-73209160 Msa0091090:intron 25.0%
! TAAATTATAAATGGCATGTC+CGG + chr1_2:73209238-73209257 None:intergenic 25.0%
!! TGAAGGTTTTTAAATTCAAC+CGG + chr1_2:73209588-73209607 None:intergenic 25.0%
! GAAAAATTTCATTGCAAGAA+AGG - chr1_2:73209645-73209664 Msa0091090:CDS 25.0%
! TGCTTAATAGTAAAAATGTC+AGG - chr1_2:73210047-73210066 Msa0091090:CDS 25.0%
! GCTTAATAGTAAAAATGTCA+GGG - chr1_2:73210048-73210067 Msa0091090:CDS 25.0%
! CTTAATAGTAAAAATGTCAG+GGG - chr1_2:73210049-73210068 Msa0091090:CDS 25.0%
! TAAAAATATCCCAACACAAA+CGG + chr1_2:73208192-73208211 None:intergenic 25.0%
!!! TTCCCTATTTTTATATGTGA+TGG - chr1_2:73208648-73208667 Msa0091090:intron 25.0%
! CATCCATCACATATAAAAAT+AGG + chr1_2:73208654-73208673 None:intergenic 25.0%
!!! TGTTTTTGTTCAGGTAATAA+TGG - chr1_2:73208991-73209010 Msa0091090:intron 25.0%
!! TCAGGTAATAATGGTTTTTA+AGG - chr1_2:73209000-73209019 Msa0091090:intron 25.0%
!!! ATAATGGTTTTTAAGGAAGT+AGG - chr1_2:73209007-73209026 Msa0091090:intron 25.0%
! ATTATTTATGTGAACTGTCA+TGG - chr1_2:73209141-73209160 Msa0091090:intron 25.0%
! TAAATTATAAATGGCATGTC+CGG + chr1_2:73209238-73209257 None:intergenic 25.0%
!! TGAAGGTTTTTAAATTCAAC+CGG + chr1_2:73209588-73209607 None:intergenic 25.0%
! GAAAAATTTCATTGCAAGAA+AGG - chr1_2:73209645-73209664 Msa0091090:CDS 25.0%
! TGCTTAATAGTAAAAATGTC+AGG - chr1_2:73210047-73210066 Msa0091090:CDS 25.0%
! GCTTAATAGTAAAAATGTCA+GGG - chr1_2:73210048-73210067 Msa0091090:CDS 25.0%
! CTTAATAGTAAAAATGTCAG+GGG - chr1_2:73210049-73210068 Msa0091090:CDS 25.0%
!!! TTGTGTTGGGATATTTTTAG+AGG - chr1_2:73208193-73208212 Msa0091090:three_prime_UTR 30.0%
!!! ATATTTTTAGAGGTGAAGAG+AGG - chr1_2:73208203-73208222 Msa0091090:three_prime_UTR 30.0%
ATGATGTTCTTGTTGAAGAA+GGG + chr1_2:73208328-73208347 None:intergenic 30.0%
ATTACATACATTGGAAAGAG+GGG + chr1_2:73208609-73208628 None:intergenic 30.0%
CATTACATACATTGGAAAGA+GGG + chr1_2:73208610-73208629 None:intergenic 30.0%
ACATTACATACATTGGAAAG+AGG + chr1_2:73208611-73208630 None:intergenic 30.0%
GAGAGAAACATTACATACAT+TGG + chr1_2:73208618-73208637 None:intergenic 30.0%
! TGATTATAATTTGTGGGATC+AGG - chr1_2:73208721-73208740 Msa0091090:intron 30.0%
! ATTTTACCGTTTGAGAGTTT+TGG + chr1_2:73209077-73209096 None:intergenic 30.0%
CTGATAGTTGTCATGAATAA+GGG - chr1_2:73209207-73209226 Msa0091090:intron 30.0%
TGATAGTTGTCATGAATAAG+GGG - chr1_2:73209208-73209227 Msa0091090:intron 30.0%
AGTTAAGTTTCAAACTCCAA+TGG + chr1_2:73209287-73209306 None:intergenic 30.0%
ATGTCATGTCCAATTTCTAA+TGG - chr1_2:73209704-73209723 Msa0091090:intron 30.0%
CAATGGGAAACACAAAAATA+TGG + chr1_2:73209752-73209771 None:intergenic 30.0%
! ATTTTTGTGTTTCCCATTGT+TGG - chr1_2:73209753-73209772 Msa0091090:intron 30.0%
!!! AGTTTTAAGTATAAAGGTCC+TGG - chr1_2:73209857-73209876 Msa0091090:CDS 30.0%
AAAATATATGCTCCATAAGC+TGG + chr1_2:73209964-73209983 None:intergenic 30.0%
ATTCCTTATATGATGATCAG+AGG + chr1_2:73209990-73210009 None:intergenic 30.0%
!!! TTGTGTTGGGATATTTTTAG+AGG - chr1_2:73208193-73208212 Msa0091090:three_prime_UTR 30.0%
!!! ATATTTTTAGAGGTGAAGAG+AGG - chr1_2:73208203-73208222 Msa0091090:three_prime_UTR 30.0%
ATGATGTTCTTGTTGAAGAA+GGG + chr1_2:73208328-73208347 None:intergenic 30.0%
ATTACATACATTGGAAAGAG+GGG + chr1_2:73208609-73208628 None:intergenic 30.0%
CATTACATACATTGGAAAGA+GGG + chr1_2:73208610-73208629 None:intergenic 30.0%
ACATTACATACATTGGAAAG+AGG + chr1_2:73208611-73208630 None:intergenic 30.0%
GAGAGAAACATTACATACAT+TGG + chr1_2:73208618-73208637 None:intergenic 30.0%
! TGATTATAATTTGTGGGATC+AGG - chr1_2:73208721-73208740 Msa0091090:intron 30.0%
! ATTTTACCGTTTGAGAGTTT+TGG + chr1_2:73209077-73209096 None:intergenic 30.0%
CTGATAGTTGTCATGAATAA+GGG - chr1_2:73209207-73209226 Msa0091090:intron 30.0%
TGATAGTTGTCATGAATAAG+GGG - chr1_2:73209208-73209227 Msa0091090:intron 30.0%
AGTTAAGTTTCAAACTCCAA+TGG + chr1_2:73209287-73209306 None:intergenic 30.0%
ATGTCATGTCCAATTTCTAA+TGG - chr1_2:73209704-73209723 Msa0091090:intron 30.0%
CAATGGGAAACACAAAAATA+TGG + chr1_2:73209752-73209771 None:intergenic 30.0%
! ATTTTTGTGTTTCCCATTGT+TGG - chr1_2:73209753-73209772 Msa0091090:intron 30.0%
!!! AGTTTTAAGTATAAAGGTCC+TGG - chr1_2:73209857-73209876 Msa0091090:CDS 30.0%
AAAATATATGCTCCATAAGC+TGG + chr1_2:73209964-73209983 None:intergenic 30.0%
ATTCCTTATATGATGATCAG+AGG + chr1_2:73209990-73210009 None:intergenic 30.0%
! GAGAATCAATCTGATGATGA+TGG - chr1_2:73208247-73208266 Msa0091090:three_prime_UTR 35.0%
GATGATGTTCTTGTTGAAGA+AGG + chr1_2:73208329-73208348 None:intergenic 35.0%
! ACGAAAGTGAAAGGTTTTCT+TGG + chr1_2:73208378-73208397 None:intergenic 35.0%
GATTGATCGAGAAGAGAATA+CGG + chr1_2:73208419-73208438 None:intergenic 35.0%
!! TTTTTCATTTCAGGTGACGA+TGG - chr1_2:73208491-73208510 Msa0091090:CDS 35.0%
AAATATTGTCAGTCCCAGAT+TGG + chr1_2:73208847-73208866 None:intergenic 35.0%
ACAATATTTCCACTTTCCCA+TGG - chr1_2:73208858-73208877 Msa0091090:intron 35.0%
ATTTAGTGAAGAGTGACCAT+GGG + chr1_2:73208877-73208896 None:intergenic 35.0%
! GCTTTTACTTGTACCATTTG+TGG - chr1_2:73208920-73208939 Msa0091090:intron 35.0%
TGCAACATTCGTAACAAGTT+TGG + chr1_2:73209044-73209063 None:intergenic 35.0%
ATCTGACCAAAACTCTCAAA+CGG - chr1_2:73209068-73209087 Msa0091090:intron 35.0%
GCTGATAGTTGTCATGAATA+AGG - chr1_2:73209206-73209225 Msa0091090:intron 35.0%
TGGAATAACAAGCTAACCAT+TGG - chr1_2:73209268-73209287 Msa0091090:intron 35.0%
ATCAGCTTTCCTAATTCTCA+GGG + chr1_2:73209360-73209379 None:intergenic 35.0%
TATCAGCTTTCCTAATTCTC+AGG + chr1_2:73209361-73209380 None:intergenic 35.0%
TGAGAATTAGGAAAGCTGAT+AGG - chr1_2:73209360-73209379 Msa0091090:intron 35.0%
! GTTTTTAAATTCAACCGGCA+GGG + chr1_2:73209583-73209602 None:intergenic 35.0%
CATCAGTCTCCATTAGAAAT+TGG + chr1_2:73209716-73209735 None:intergenic 35.0%
CAATTTCTAATGGAGACTGA+TGG - chr1_2:73209714-73209733 Msa0091090:intron 35.0%
TTAAGTATAAAGGTCCTGGA+TGG - chr1_2:73209861-73209880 Msa0091090:CDS 35.0%
TAAGTATAAAGGTCCTGGAT+GGG - chr1_2:73209862-73209881 Msa0091090:CDS 35.0%
! GAGAATCAATCTGATGATGA+TGG - chr1_2:73208247-73208266 Msa0091090:three_prime_UTR 35.0%
GATGATGTTCTTGTTGAAGA+AGG + chr1_2:73208329-73208348 None:intergenic 35.0%
! ACGAAAGTGAAAGGTTTTCT+TGG + chr1_2:73208378-73208397 None:intergenic 35.0%
GATTGATCGAGAAGAGAATA+CGG + chr1_2:73208419-73208438 None:intergenic 35.0%
!! TTTTTCATTTCAGGTGACGA+TGG - chr1_2:73208491-73208510 Msa0091090:CDS 35.0%
AAATATTGTCAGTCCCAGAT+TGG + chr1_2:73208847-73208866 None:intergenic 35.0%
ACAATATTTCCACTTTCCCA+TGG - chr1_2:73208858-73208877 Msa0091090:intron 35.0%
ATTTAGTGAAGAGTGACCAT+GGG + chr1_2:73208877-73208896 None:intergenic 35.0%
! GCTTTTACTTGTACCATTTG+TGG - chr1_2:73208920-73208939 Msa0091090:intron 35.0%
TGCAACATTCGTAACAAGTT+TGG + chr1_2:73209044-73209063 None:intergenic 35.0%
ATCTGACCAAAACTCTCAAA+CGG - chr1_2:73209068-73209087 Msa0091090:intron 35.0%
GCTGATAGTTGTCATGAATA+AGG - chr1_2:73209206-73209225 Msa0091090:intron 35.0%
TGGAATAACAAGCTAACCAT+TGG - chr1_2:73209268-73209287 Msa0091090:intron 35.0%
ATCAGCTTTCCTAATTCTCA+GGG + chr1_2:73209360-73209379 None:intergenic 35.0%
TATCAGCTTTCCTAATTCTC+AGG + chr1_2:73209361-73209380 None:intergenic 35.0%
TGAGAATTAGGAAAGCTGAT+AGG - chr1_2:73209360-73209379 Msa0091090:intron 35.0%
! GTTTTTAAATTCAACCGGCA+GGG + chr1_2:73209583-73209602 None:intergenic 35.0%
CATCAGTCTCCATTAGAAAT+TGG + chr1_2:73209716-73209735 None:intergenic 35.0%
CAATTTCTAATGGAGACTGA+TGG - chr1_2:73209714-73209733 Msa0091090:intron 35.0%
TTAAGTATAAAGGTCCTGGA+TGG - chr1_2:73209861-73209880 Msa0091090:CDS 35.0%
TAAGTATAAAGGTCCTGGAT+GGG - chr1_2:73209862-73209881 Msa0091090:CDS 35.0%
!! TTTTTAGAGGTGAAGAGAGG+AGG - chr1_2:73208206-73208225 Msa0091090:three_prime_UTR 40.0%
TCTTGTTGAAGAAGGGAAGA+TGG + chr1_2:73208321-73208340 None:intergenic 40.0%
AAGGTTGAAGTTGAGTTCGT+TGG + chr1_2:73208552-73208571 None:intergenic 40.0%
AATGGAGAAACAGCGATTAG+CGG + chr1_2:73208585-73208604 None:intergenic 40.0%
TACATTGGAAAGAGGGGAAA+TGG + chr1_2:73208603-73208622 None:intergenic 40.0%
! TAATTTGTGGGATCAGGATG+CGG - chr1_2:73208727-73208746 Msa0091090:intron 40.0%
GATTTAGTGAAGAGTGACCA+TGG + chr1_2:73208878-73208897 None:intergenic 40.0%
AATCCTCATGCTTACACTGA+TGG - chr1_2:73208965-73208984 Msa0091090:intron 40.0%
!!! TGATGGCACTGTTTTTGTTC+AGG - chr1_2:73208982-73209001 Msa0091090:intron 40.0%
! TGTCATGGATTGCATAAGAC+AGG - chr1_2:73209156-73209175 Msa0091090:intron 40.0%
ACTCGAAGTCTAGCATCATA+TGG + chr1_2:73209334-73209353 None:intergenic 40.0%
TATGATGCTAGACTTCGAGT+TGG - chr1_2:73209334-73209353 Msa0091090:intron 40.0%
AAAATGTACTTCAACCCTGC+CGG - chr1_2:73209566-73209585 Msa0091090:CDS 40.0%
! GGTTTTTAAATTCAACCGGC+AGG + chr1_2:73209584-73209603 None:intergenic 40.0%
AAAGACTGACGTCGATATTC+TGG - chr1_2:73209619-73209638 Msa0091090:CDS 40.0%
TTCACAACACTGCCAACAAT+GGG + chr1_2:73209768-73209787 None:intergenic 40.0%
ATTCACAACACTGCCAACAA+TGG + chr1_2:73209769-73209788 None:intergenic 40.0%
CAATGCGTATCATAAGCTTG+TGG - chr1_2:73209790-73209809 Msa0091090:intron 40.0%
! GGATCACTTGAACTTGTTTC+AGG - chr1_2:73209811-73209830 Msa0091090:intron 40.0%
! TGATCTCAAGTTCAGGTTCA+TGG - chr1_2:73209886-73209905 Msa0091090:CDS 40.0%
TGGCAATTCACTCATGTAAC+GGG + chr1_2:73209944-73209963 None:intergenic 40.0%
CTGGCAATTCACTCATGTAA+CGG + chr1_2:73209945-73209964 None:intergenic 40.0%
ATGAGTGAATTGCCAGCTTA+TGG - chr1_2:73209949-73209968 Msa0091090:intron 40.0%
CTGCCTCTGATCATCATATA+AGG - chr1_2:73209984-73210003 Msa0091090:intron 40.0%
CTTCTCTTCATCTTGTGAGA+TGG - chr1_2:73210195-73210214 Msa0091090:five_prime_UTR 40.0%
CTTCATCTTGTGAGATGGTT+AGG - chr1_2:73210200-73210219 Msa0091090:five_prime_UTR 40.0%
!! TTTTTAGAGGTGAAGAGAGG+AGG - chr1_2:73208206-73208225 Msa0091090:three_prime_UTR 40.0%
TCTTGTTGAAGAAGGGAAGA+TGG + chr1_2:73208321-73208340 None:intergenic 40.0%
AAGGTTGAAGTTGAGTTCGT+TGG + chr1_2:73208552-73208571 None:intergenic 40.0%
AATGGAGAAACAGCGATTAG+CGG + chr1_2:73208585-73208604 None:intergenic 40.0%
TACATTGGAAAGAGGGGAAA+TGG + chr1_2:73208603-73208622 None:intergenic 40.0%
! TAATTTGTGGGATCAGGATG+CGG - chr1_2:73208727-73208746 Msa0091090:intron 40.0%
GATTTAGTGAAGAGTGACCA+TGG + chr1_2:73208878-73208897 None:intergenic 40.0%
AATCCTCATGCTTACACTGA+TGG - chr1_2:73208965-73208984 Msa0091090:intron 40.0%
!!! TGATGGCACTGTTTTTGTTC+AGG - chr1_2:73208982-73209001 Msa0091090:intron 40.0%
! TGTCATGGATTGCATAAGAC+AGG - chr1_2:73209156-73209175 Msa0091090:intron 40.0%
ACTCGAAGTCTAGCATCATA+TGG + chr1_2:73209334-73209353 None:intergenic 40.0%
TATGATGCTAGACTTCGAGT+TGG - chr1_2:73209334-73209353 Msa0091090:intron 40.0%
AAAATGTACTTCAACCCTGC+CGG - chr1_2:73209566-73209585 Msa0091090:CDS 40.0%
! GGTTTTTAAATTCAACCGGC+AGG + chr1_2:73209584-73209603 None:intergenic 40.0%
AAAGACTGACGTCGATATTC+TGG - chr1_2:73209619-73209638 Msa0091090:CDS 40.0%
TTCACAACACTGCCAACAAT+GGG + chr1_2:73209768-73209787 None:intergenic 40.0%
ATTCACAACACTGCCAACAA+TGG + chr1_2:73209769-73209788 None:intergenic 40.0%
CAATGCGTATCATAAGCTTG+TGG - chr1_2:73209790-73209809 Msa0091090:intron 40.0%
! GGATCACTTGAACTTGTTTC+AGG - chr1_2:73209811-73209830 Msa0091090:intron 40.0%
! TGATCTCAAGTTCAGGTTCA+TGG - chr1_2:73209886-73209905 Msa0091090:CDS 40.0%
TGGCAATTCACTCATGTAAC+GGG + chr1_2:73209944-73209963 None:intergenic 40.0%
CTGGCAATTCACTCATGTAA+CGG + chr1_2:73209945-73209964 None:intergenic 40.0%
ATGAGTGAATTGCCAGCTTA+TGG - chr1_2:73209949-73209968 Msa0091090:intron 40.0%
CTGCCTCTGATCATCATATA+AGG - chr1_2:73209984-73210003 Msa0091090:intron 40.0%
CTTCTCTTCATCTTGTGAGA+TGG - chr1_2:73210195-73210214 Msa0091090:five_prime_UTR 40.0%
CTTCATCTTGTGAGATGGTT+AGG - chr1_2:73210200-73210219 Msa0091090:five_prime_UTR 40.0%
GAAGGGAAGATGGAGAAAGA+AGG + chr1_2:73208311-73208330 None:intergenic 45.0%
AGAGGGTAGACGAAAGTGAA+AGG + chr1_2:73208387-73208406 None:intergenic 45.0%
GAATACGGACGCTTAGAAGA+GGG + chr1_2:73208404-73208423 None:intergenic 45.0%
AGAATACGGACGCTTAGAAG+AGG + chr1_2:73208405-73208424 None:intergenic 45.0%
ATGGAGAAACAGCGATTAGC+GGG + chr1_2:73208584-73208603 None:intergenic 45.0%
CACTCTTCACTAAATCTCCC+AGG - chr1_2:73208882-73208901 Msa0091090:intron 45.0%
GAACCAAACTTTGAGCAGCT+CGG + chr1_2:73209120-73209139 None:intergenic 45.0%
GTCATGAATAAGGGGCAATC+CGG - chr1_2:73209216-73209235 Msa0091090:intron 45.0%
!!! GTCTTTTAAGAGCGGGTTGA+AGG + chr1_2:73209605-73209624 None:intergenic 45.0%
!! GACGTCAGTCTTTTAAGAGC+GGG + chr1_2:73209612-73209631 None:intergenic 45.0%
!! CGACGTCAGTCTTTTAAGAG+CGG + chr1_2:73209613-73209632 None:intergenic 45.0%
AACTTGAGATCATCCCATCC+AGG + chr1_2:73209878-73209897 None:intergenic 45.0%
GATGGGATGATCTCAAGTTC+AGG - chr1_2:73209879-73209898 Msa0091090:CDS 45.0%
GGCAATTCACTCATGTAACG+GGG + chr1_2:73209943-73209962 None:intergenic 45.0%
GAAGGGAAGATGGAGAAAGA+AGG + chr1_2:73208311-73208330 None:intergenic 45.0%
AGAGGGTAGACGAAAGTGAA+AGG + chr1_2:73208387-73208406 None:intergenic 45.0%
GAATACGGACGCTTAGAAGA+GGG + chr1_2:73208404-73208423 None:intergenic 45.0%
AGAATACGGACGCTTAGAAG+AGG + chr1_2:73208405-73208424 None:intergenic 45.0%
ATGGAGAAACAGCGATTAGC+GGG + chr1_2:73208584-73208603 None:intergenic 45.0%
CACTCTTCACTAAATCTCCC+AGG - chr1_2:73208882-73208901 Msa0091090:intron 45.0%
GAACCAAACTTTGAGCAGCT+CGG + chr1_2:73209120-73209139 None:intergenic 45.0%
GTCATGAATAAGGGGCAATC+CGG - chr1_2:73209216-73209235 Msa0091090:intron 45.0%
!!! GTCTTTTAAGAGCGGGTTGA+AGG + chr1_2:73209605-73209624 None:intergenic 45.0%
!! GACGTCAGTCTTTTAAGAGC+GGG + chr1_2:73209612-73209631 None:intergenic 45.0%
!! CGACGTCAGTCTTTTAAGAG+CGG + chr1_2:73209613-73209632 None:intergenic 45.0%
AACTTGAGATCATCCCATCC+AGG + chr1_2:73209878-73209897 None:intergenic 45.0%
GATGGGATGATCTCAAGTTC+AGG - chr1_2:73209879-73209898 Msa0091090:CDS 45.0%
GGCAATTCACTCATGTAACG+GGG + chr1_2:73209943-73209962 None:intergenic 45.0%
!!! AAAATTTTTTTTTTTTTTGA+AGG - chr1_2:73209415-73209434 Msa0091090:intron 5.0%
!!! AAAATTTTTTTTTTTTTTGA+AGG - chr1_2:73209415-73209434 Msa0091090:intron 5.0%
GATTAGCGGGAACTGGAGAA+AGG + chr1_2:73208571-73208590 None:intergenic 50.0%
AAACAGCGATTAGCGGGAAC+TGG + chr1_2:73208578-73208597 None:intergenic 50.0%
TTGAGTGCAGCAACAGGTAG+AGG - chr1_2:73208764-73208783 Msa0091090:intron 50.0%
ACAGGTAGAGGATGGACAAC+AGG - chr1_2:73208776-73208795 Msa0091090:intron 50.0%
AGAGGATGGACAACAGGTTC+TGG - chr1_2:73208782-73208801 Msa0091090:intron 50.0%
GAGGATGGACAACAGGTTCT+GGG - chr1_2:73208783-73208802 Msa0091090:intron 50.0%
!! ATGGACAACAGGTTCTGGGA+TGG - chr1_2:73208787-73208806 Msa0091090:intron 50.0%
!! ACAACAGGTTCTGGGATGGA+AGG - chr1_2:73208791-73208810 Msa0091090:intron 50.0%
TTGGCAAGGATGGCCAATCT+GGG - chr1_2:73208831-73208850 Msa0091090:intron 50.0%
GAAGAGTGACCATGGGAAAG+TGG + chr1_2:73208870-73208889 None:intergenic 50.0%
TCACTAAATCTCCCAGGCGA+AGG - chr1_2:73208888-73208907 Msa0091090:intron 50.0%
AGTAGTTCGCTGGCCACAAA+TGG + chr1_2:73208936-73208955 None:intergenic 50.0%
TAATAGCGCGAGTAGTTCGC+TGG + chr1_2:73208946-73208965 None:intergenic 50.0%
GTGCCATCAGTGTAAGCATG+AGG + chr1_2:73208971-73208990 None:intergenic 50.0%
TAGCCGAGCTGCTCAAAGTT+TGG - chr1_2:73209114-73209133 Msa0091090:intron 50.0%
!! TCGAGTTGGCCCTGAGAATT+AGG - chr1_2:73209348-73209367 Msa0091090:intron 50.0%
GATTAGCGGGAACTGGAGAA+AGG + chr1_2:73208571-73208590 None:intergenic 50.0%
AAACAGCGATTAGCGGGAAC+TGG + chr1_2:73208578-73208597 None:intergenic 50.0%
TTGAGTGCAGCAACAGGTAG+AGG - chr1_2:73208764-73208783 Msa0091090:intron 50.0%
ACAGGTAGAGGATGGACAAC+AGG - chr1_2:73208776-73208795 Msa0091090:intron 50.0%
AGAGGATGGACAACAGGTTC+TGG - chr1_2:73208782-73208801 Msa0091090:intron 50.0%
GAGGATGGACAACAGGTTCT+GGG - chr1_2:73208783-73208802 Msa0091090:intron 50.0%
!! ATGGACAACAGGTTCTGGGA+TGG - chr1_2:73208787-73208806 Msa0091090:intron 50.0%
!! ACAACAGGTTCTGGGATGGA+AGG - chr1_2:73208791-73208810 Msa0091090:intron 50.0%
TTGGCAAGGATGGCCAATCT+GGG - chr1_2:73208831-73208850 Msa0091090:intron 50.0%
GAAGAGTGACCATGGGAAAG+TGG + chr1_2:73208870-73208889 None:intergenic 50.0%
TCACTAAATCTCCCAGGCGA+AGG - chr1_2:73208888-73208907 Msa0091090:intron 50.0%
AGTAGTTCGCTGGCCACAAA+TGG + chr1_2:73208936-73208955 None:intergenic 50.0%
TAATAGCGCGAGTAGTTCGC+TGG + chr1_2:73208946-73208965 None:intergenic 50.0%
GTGCCATCAGTGTAAGCATG+AGG + chr1_2:73208971-73208990 None:intergenic 50.0%
TAGCCGAGCTGCTCAAAGTT+TGG - chr1_2:73209114-73209133 Msa0091090:intron 50.0%
!! TCGAGTTGGCCCTGAGAATT+AGG - chr1_2:73209348-73209367 Msa0091090:intron 50.0%
! CTGGTGTTGAGTGCAGCAAC+AGG - chr1_2:73208758-73208777 Msa0091090:intron 55.0%
GTGCAGCAACAGGTAGAGGA+TGG - chr1_2:73208768-73208787 Msa0091090:intron 55.0%
TTGCCAACAGCAGGAACAGG+GGG + chr1_2:73208818-73208837 None:intergenic 55.0%
CTTGCCAACAGCAGGAACAG+GGG + chr1_2:73208819-73208838 None:intergenic 55.0%
CCTTGCCAACAGCAGGAACA+GGG + chr1_2:73208820-73208839 None:intergenic 55.0%
TCCTTGCCAACAGCAGGAAC+AGG + chr1_2:73208821-73208840 None:intergenic 55.0%
GTTCCTGCTGTTGGCAAGGA+TGG - chr1_2:73208821-73208840 Msa0091090:intron 55.0%
GTTGGCAAGGATGGCCAATC+TGG - chr1_2:73208830-73208849 Msa0091090:intron 55.0%
! CTGGTGTTGAGTGCAGCAAC+AGG - chr1_2:73208758-73208777 Msa0091090:intron 55.0%
GTGCAGCAACAGGTAGAGGA+TGG - chr1_2:73208768-73208787 Msa0091090:intron 55.0%
TTGCCAACAGCAGGAACAGG+GGG + chr1_2:73208818-73208837 None:intergenic 55.0%
CTTGCCAACAGCAGGAACAG+GGG + chr1_2:73208819-73208838 None:intergenic 55.0%
CCTTGCCAACAGCAGGAACA+GGG + chr1_2:73208820-73208839 None:intergenic 55.0%
TCCTTGCCAACAGCAGGAAC+AGG + chr1_2:73208821-73208840 None:intergenic 55.0%
GTTCCTGCTGTTGGCAAGGA+TGG - chr1_2:73208821-73208840 Msa0091090:intron 55.0%
GTTGGCAAGGATGGCCAATC+TGG - chr1_2:73208830-73208849 Msa0091090:intron 55.0%
TGGGATCAGGATGCGGCGAT+GGG - chr1_2:73208734-73208753 Msa0091090:intron 60.0%
CCCTGTTCCTGCTGTTGGCA+AGG - chr1_2:73208817-73208836 Msa0091090:intron 60.0%
TGGCCATCCTTGCCAACAGC+AGG + chr1_2:73208827-73208846 None:intergenic 60.0%
GCGATGAGCATCCTTCGCCT+GGG + chr1_2:73208902-73208921 None:intergenic 60.0%
AGCGATGAGCATCCTTCGCC+TGG + chr1_2:73208903-73208922 None:intergenic 60.0%
TGGGATCAGGATGCGGCGAT+GGG - chr1_2:73208734-73208753 Msa0091090:intron 60.0%
CCCTGTTCCTGCTGTTGGCA+AGG - chr1_2:73208817-73208836 Msa0091090:intron 60.0%
TGGCCATCCTTGCCAACAGC+AGG + chr1_2:73208827-73208846 None:intergenic 60.0%
GCGATGAGCATCCTTCGCCT+GGG + chr1_2:73208902-73208921 None:intergenic 60.0%
AGCGATGAGCATCCTTCGCC+TGG + chr1_2:73208903-73208922 None:intergenic 60.0%
GTGGGATCAGGATGCGGCGA+TGG - chr1_2:73208733-73208752 Msa0091090:intron 65.0%
TCAGGATGCGGCGATGGGAC+TGG - chr1_2:73208739-73208758 Msa0091090:intron 65.0%
GGTCCCCCTGTTCCTGCTGT+TGG - chr1_2:73208812-73208831 Msa0091090:intron 65.0%
GTGGGATCAGGATGCGGCGA+TGG - chr1_2:73208733-73208752 Msa0091090:intron 65.0%
TCAGGATGCGGCGATGGGAC+TGG - chr1_2:73208739-73208758 Msa0091090:intron 65.0%
GGTCCCCCTGTTCCTGCTGT+TGG - chr1_2:73208812-73208831 Msa0091090:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73208191 73210247 73208191 ID=Msa0091090;Name=Msa0091090
chr1_2 mRNA 73208191 73210247 73208191 ID=Msa0091090-mRNA-1;Parent=Msa0091090;Name=Msa0091090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=69|1|1|1|1|1|4|295|234
chr1_2 exon 73208191 73208659 73208191 ID=Msa0091090-mRNA-1:exon:25560;Parent=Msa0091090-mRNA-1
chr1_2 exon 73209435 73209695 73209435 ID=Msa0091090-mRNA-1:exon:25559;Parent=Msa0091090-mRNA-1
chr1_2 exon 73209819 73209934 73209819 ID=Msa0091090-mRNA-1:exon:25558;Parent=Msa0091090-mRNA-1
chr1_2 exon 73210025 73210247 73210025 ID=Msa0091090-mRNA-1:exon:25557;Parent=Msa0091090-mRNA-1
chr1_2 five_prime_UTR 73210179 73210247 73210179 ID=Msa0091090-mRNA-1:five_prime_utr;Parent=Msa0091090-mRNA-1
chr1_2 CDS 73210025 73210178 73210025 ID=Msa0091090-mRNA-1:cds;Parent=Msa0091090-mRNA-1
chr1_2 CDS 73209819 73209934 73209819 ID=Msa0091090-mRNA-1:cds;Parent=Msa0091090-mRNA-1
chr1_2 CDS 73209435 73209695 73209435 ID=Msa0091090-mRNA-1:cds;Parent=Msa0091090-mRNA-1
chr1_2 CDS 73208486 73208659 73208486 ID=Msa0091090-mRNA-1:cds;Parent=Msa0091090-mRNA-1
chr1_2 three_prime_UTR 73208191 73208485 73208191 ID=Msa0091090-mRNA-1:three_prime_utr;Parent=Msa0091090-mRNA-1
Gene Sequence

>Msa0091090

ATGATGATGGAATGTTTGAGTTCATCTTCTGCAGCAACAACAACTCTACCTTCTTTCTCCATCTTCCCTTCTTCAACAAGAACATCATCATCATCATCATCATCTCTTTCTTCTTCCAAGAAAACCTTTCACTTTCGTCTACCCTCTTCTAAGCGTGACGATGGTAACAACGATTCAGAATCGCAATCTAAATCATCATCCAACGAACTCAACTTCAACCTTTCTCCAGTTCCCGCTAATCGCTGTTTCTCCATTTCCCCTCTTTCCAATGATGCGGCGATGGGACTGGTGTTGAGTGCAGCAACAGGTAGAGGATGGACAACAGGTTCTGGGATGGAAGGTCCCCCTGTTCCTGCTGTTGGCAAGGATGGCCAATCTGGGACTGACAATATTTCCACTTTCCCATGGTCACTCTTCACTAAATCTCCCAGGCGAAGGATGCTCATCGCTTTTACTTGTACCATTTGTGGCCAGCGAACTACTCGCGCTATTAATCCTCATGCTTACACTGATGGCACTGTTTTTGTTCAGTGTTGTGAATGCAATGCGTATCATAAGCTTGTGGATCACTTGAACTTGTTTCAGGAGACGAATTGCTATTTGAATTCAAGTTTTAAGTATAAAGGTCCTGGATGGGATGATCTCAAGTTCAGGTTCATGGACATAGATAGCGACGACGATGATGATGTATTCCCCGTTACATGA

Protein sequence

>Msa0091090

MMMECLSSSSAATTTLPSFSIFPSSTRTSSSSSSSLSSSKKTFHFRLPSSKRDDGNNDSESQSKSSSNELNFNLSPVPANRCFSISPLSNDAAMGLVLSAATGRGWTTGSGMEGPPVPAVGKDGQSGTDNISTFPWSLFTKSPRRRMLIAFTCTICGQRTTRAINPHAYTDGTVFVQCCECNAYHKLVDHLNLFQETNCYLNSSFKYKGPGWDDLKFRFMDIDSDDDDDVFPVT*