Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588650 | XP_024636922.1 | 94.578 | 498 | 21 | 1 | 1 | 492 | 1 | 498 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588650 | sp|F4KGN5|S40A2_ARATH | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0588650 | Msa0588690 | 0.964649 | 1.359481e-123 | -8.615850e-47 |
| Msa0588650 | Msa0628830 | 0.808621 | 2.830086e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588650 | MtrunA17_Chr4g0004881 | 94.578 | 498 | 21 | 1 | 1 | 492 | 1 | 498 | 0.0 | 937 |
| Msa0588650 | MtrunA17_Chr4g0004871 | 88.072 | 503 | 50 | 3 | 1 | 493 | 1 | 503 | 0.0 | 872 |
| Msa0588650 | MtrunA17_Chr1g0192831 | 24.540 | 489 | 296 | 15 | 8 | 470 | 126 | 567 | 9.60e-19 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588650 | AT5G03570.2 | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Msa0588650 | AT5G03570.1 | 57.769 | 502 | 194 | 2 | 3 | 486 | 2 | 503 | 0.0 | 584 |
| Msa0588650 | AT2G38460.3 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT2G38460.8 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT2G38460.7 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT2G38460.4 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT2G38460.1 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT2G38460.6 | 58.678 | 484 | 190 | 2 | 13 | 486 | 24 | 507 | 0.0 | 574 |
| Msa0588650 | AT5G03570.3 | 54.924 | 528 | 194 | 3 | 3 | 486 | 2 | 529 | 0.0 | 570 |
| Msa0588650 | AT5G03570.4 | 59.780 | 455 | 177 | 1 | 38 | 486 | 4 | 458 | 0.0 | 554 |
| Msa0588650 | AT2G38460.2 | 58.160 | 337 | 135 | 1 | 156 | 486 | 26 | 362 | 4.97e-136 | 398 |
| Msa0588650 | AT2G38460.5 | 58.160 | 337 | 135 | 1 | 156 | 486 | 26 | 362 | 4.97e-136 | 398 |
| Msa0588650 | AT5G26820.1 | 26.446 | 484 | 294 | 16 | 26 | 486 | 152 | 596 | 1.24e-22 | 101 |
Find 115 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTTGAATTGTTCCTTTC+TGG | 0.073729 | 4_2:-11090484 | None:intergenic |
| GAGTTCACTTCAGTCCTTTA+TGG | 0.111551 | 4_2:+11091696 | Msa0588650:CDS |
| AAGTTATAGCAGATGCTTTA+AGG | 0.153997 | 4_2:-11090336 | None:intergenic |
| TAAATAACTGCATTGGATTA+TGG | 0.172820 | 4_2:+11092295 | Msa0588650:three_prime_UTR |
| TCAGTCCTTTATGGATTTAT+TGG | 0.177636 | 4_2:+11091705 | Msa0588650:CDS |
| GTTGAGTTTATTATCATTTC+TGG | 0.179167 | 4_2:+11091951 | Msa0588650:CDS |
| TTGGCTTCACAATATTTAAT+AGG | 0.186744 | 4_2:-11092461 | None:intergenic |
| GAACTGGACTTTGGTCTATT+TGG | 0.205127 | 4_2:+11091108 | Msa0588650:CDS |
| CAGCAAGAAGTTGTGCTTCC+TGG | 0.222666 | 4_2:+11090631 | Msa0588650:CDS |
| GTTTATATATGATCAGTATT+TGG | 0.251156 | 4_2:+11088948 | Msa0588650:CDS |
| TACCTTGTTTAGCTGCAATA+TGG | 0.269742 | 4_2:+11091391 | Msa0588650:CDS |
| GGTATACCTGCATATGTAAT+TGG | 0.278402 | 4_2:+11091002 | Msa0588650:CDS |
| GGATTTATTGGCCTATGTTA+TGG | 0.283833 | 4_2:+11091717 | Msa0588650:CDS |
| ACCACAAGTAATAAGAAAAC+TGG | 0.292874 | 4_2:-11089653 | None:intergenic |
| TGGCTTCACAATATTTAATA+GGG | 0.319413 | 4_2:-11092460 | None:intergenic |
| GATTTATTGGCCTATGTTAT+GGG | 0.325753 | 4_2:+11091718 | Msa0588650:CDS |
| CATTGTCTCGGCTTGGACTC+TGG | 0.329902 | 4_2:+11091460 | Msa0588650:CDS |
| TATGTCACATTCAGGAGTTC+TGG | 0.331887 | 4_2:+11091926 | Msa0588650:intron |
| TTGGAATGGTGTTTCTGTTT+GGG | 0.333175 | 4_2:+11090366 | Msa0588650:CDS |
| ACAATCAAACGATCCGATTC+AGG | 0.333555 | 4_2:-11091661 | None:intergenic |
| TCTGCTTCCATTGCACTGTT+TGG | 0.337388 | 4_2:+11089013 | Msa0588650:CDS |
| GACAGGTGCAAGAAGCTTGC+AGG | 0.343176 | 4_2:-11090284 | None:intergenic |
| CTGCTGTATGCAGCAATATA+TGG | 0.350292 | 4_2:+11088980 | Msa0588650:CDS |
| AGTTATAGCAGATGCTTTAA+GGG | 0.354740 | 4_2:-11090335 | None:intergenic |
| TTTGGAATGGTGTTTCTGTT+TGG | 0.356948 | 4_2:+11090365 | Msa0588650:CDS |
| GGAGTACTTTCAACTCTTGC+TGG | 0.363166 | 4_2:+11089701 | Msa0588650:CDS |
| AGAAGGAAAATCTTGTTCAT+TGG | 0.375283 | 4_2:-11088488 | None:intergenic |
| GAATCGGATCGTTTGATTGT+TGG | 0.385722 | 4_2:+11091664 | Msa0588650:CDS |
| GCTGCAATATGGATCTATAA+TGG | 0.389933 | 4_2:+11091402 | Msa0588650:CDS |
| TGCATGATCGTTGTAAGCTA+TGG | 0.390324 | 4_2:+11092068 | Msa0588650:exon |
| TTGATCACTTATTTATACTT+TGG | 0.394825 | 4_2:+11088514 | Msa0588650:CDS |
| GCACTGTTTGGTCCTTTGAT+TGG | 0.396123 | 4_2:+11089025 | Msa0588650:CDS |
| CTGCTATAACTTTAGCACTT+TGG | 0.399038 | 4_2:+11090347 | Msa0588650:CDS |
| CTTCTTGCACCTGTCATAAC+CGG | 0.401032 | 4_2:+11090292 | Msa0588650:CDS |
| GATAGTTTGCTTCATGATAC+TGG | 0.408681 | 4_2:+11090514 | Msa0588650:CDS |
| TTTCTGTTTGGGTGGAGTAT+TGG | 0.409671 | 4_2:+11090377 | Msa0588650:CDS |
| ACTTTGGTCTATTTGGTCTC+AGG | 0.413716 | 4_2:+11091115 | Msa0588650:CDS |
| ATCAATATCTGTGGTGGCAT+TGG | 0.415810 | 4_2:+11089680 | Msa0588650:CDS |
| CGAGGAATAAGCGCTGTAAT+CGG | 0.427494 | 4_2:+11091032 | Msa0588650:CDS |
| GCATGATCGTTGTAAGCTAT+GGG | 0.427896 | 4_2:+11092069 | Msa0588650:exon |
| CATATATCAGCTATTAGAAC+TGG | 0.435345 | 4_2:+11091092 | Msa0588650:CDS |
| GCTGCATACAGCAGTGAGTC+TGG | 0.436769 | 4_2:-11088971 | None:intergenic |
| AAGGTTTCTCCACTTACTCT+AGG | 0.438174 | 4_2:+11092432 | Msa0588650:three_prime_UTR |
| TGATGACAGCCACTTTAGAA+TGG | 0.438528 | 4_2:+11090976 | Msa0588650:CDS |
| ATTTAAGTCTCAACTTTCCT+TGG | 0.440646 | 4_2:-11092097 | None:intergenic |
| CTTAAATCTCAGCGAGGCCT+CGG | 0.442287 | 4_2:+11092113 | Msa0588650:three_prime_UTR |
| GGTGAAATCATGAGATTAGT+AGG | 0.444642 | 4_2:+11092195 | Msa0588650:three_prime_UTR |
| TACAAAGCTTATAATGAAAC+CGG | 0.445020 | 4_2:-11090311 | None:intergenic |
| TTGCAGCTAAACAAGGTAGA+AGG | 0.448541 | 4_2:-11091386 | None:intergenic |
| TTTGTTCGAAAATAGACATC+TGG | 0.449289 | 4_2:+11092349 | Msa0588650:three_prime_UTR |
| TGTGCTTCCTGGACTAGCTC+TGG | 0.453209 | 4_2:+11090642 | Msa0588650:CDS |
| ACAAATCATAAAGAGAGGTT+TGG | 0.467475 | 4_2:+11092141 | Msa0588650:three_prime_UTR |
| ATAGGCCAATAAATCCATAA+AGG | 0.474038 | 4_2:-11091710 | None:intergenic |
| AAATCTCTTATGTTGATGCT+TGG | 0.474778 | 4_2:+11090596 | Msa0588650:CDS |
| ACAGAACCTTGTTCCTGAAT+CGG | 0.475223 | 4_2:+11091648 | Msa0588650:intron |
| CAGCTATTAGAACTGGACTT+TGG | 0.486368 | 4_2:+11091099 | Msa0588650:CDS |
| TGCTTCATGATACTGGTGAT+AGG | 0.489279 | 4_2:+11090521 | Msa0588650:CDS |
| GATGACAGCCACTTTAGAAT+GGG | 0.490653 | 4_2:+11090977 | Msa0588650:CDS |
| TGGGGAGTGTCGCATTGTCT+CGG | 0.490686 | 4_2:+11091448 | Msa0588650:CDS |
| GCTATTCCAATTACATATGC+AGG | 0.500880 | 4_2:-11091008 | None:intergenic |
| CAGTTCGGATGGTTGACCTT+CGG | 0.504389 | 4_2:-11090221 | None:intergenic |
| ATTCATCTTCGTCAGCAGTT+CGG | 0.505045 | 4_2:-11090236 | None:intergenic |
| CAAAGATGAGTAGACAAGTA+AGG | 0.506015 | 4_2:-11089615 | None:intergenic |
| ACTCCCCATCAAAATATATG+AGG | 0.506164 | 4_2:-11091433 | None:intergenic |
| ACGTTTCTAAATAACTGCAT+TGG | 0.510356 | 4_2:+11092288 | Msa0588650:intron |
| TCGGATCGTTTGATTGTTGG+AGG | 0.514780 | 4_2:+11091667 | Msa0588650:CDS |
| TACTGGTGATAGGTCAGAAT+TGG | 0.515128 | 4_2:+11090531 | Msa0588650:CDS |
| AGTGTCGCATTGTCTCGGCT+TGG | 0.524086 | 4_2:+11091453 | Msa0588650:CDS |
| TGATAAGTTGACTTACCAAA+AGG | 0.525992 | 4_2:+11089057 | Msa0588650:CDS |
| GCTTCCGCACGCGGAACACA+TGG | 0.526869 | 4_2:-11092005 | None:intergenic |
| TTGGTCCTTTGATTGGAACA+TGG | 0.526875 | 4_2:+11089032 | Msa0588650:CDS |
| TGGTCCTTTGATTGGAACAT+GGG | 0.527558 | 4_2:+11089033 | Msa0588650:CDS |
| AGGGTCGACCCTAGAGTAAG+TGG | 0.529920 | 4_2:-11092441 | None:intergenic |
| GAATGGTGTTTCTGTTTGGG+TGG | 0.530211 | 4_2:+11090369 | Msa0588650:CDS |
| ATAACTTTAGCACTTTGGAA+TGG | 0.530900 | 4_2:+11090352 | Msa0588650:CDS |
| GATATATGATACTCTAGAGC+AGG | 0.531831 | 4_2:-11091077 | None:intergenic |
| ATCTTCGTCAGCAGTTCGGA+TGG | 0.536068 | 4_2:-11090232 | None:intergenic |
| CTATCTTGATAGAAAGAGAA+TGG | 0.536593 | 4_2:+11089726 | Msa0588650:CDS |
| TGGCTACTTCGACACAAAGC+AGG | 0.542689 | 4_2:-11090427 | None:intergenic |
| ATGAGATTAGTAGGCTACAT+AGG | 0.545405 | 4_2:+11092204 | Msa0588650:three_prime_UTR |
| TGGTGATAGGTCAGAATTGG+TGG | 0.551356 | 4_2:+11090534 | Msa0588650:CDS |
| AAATAAGTGATCAAAGAAGA+AGG | 0.551934 | 4_2:-11088505 | None:intergenic |
| CACTTTGACAAACTATGGTG+TGG | 0.553784 | 4_2:+11092036 | Msa0588650:CDS |
| AGCAAAGCCAGAGCTAGTCC+AGG | 0.555663 | 4_2:-11090649 | None:intergenic |
| TCAACCCATGTTCCAATCAA+AGG | 0.557514 | 4_2:-11089037 | None:intergenic |
| AGGTTTCTCCACTTACTCTA+GGG | 0.559198 | 4_2:+11092433 | Msa0588650:three_prime_UTR |
| ATAATGAAACCGGTTATGAC+AGG | 0.563001 | 4_2:-11090301 | None:intergenic |
| TTTGTTGGACTTCAGAGTGA+AGG | 0.563142 | 4_2:+11092174 | Msa0588650:three_prime_UTR |
| TATTATGATTCCCATAACAT+AGG | 0.572039 | 4_2:-11091728 | None:intergenic |
| TATACCTTCCCATTCTAAAG+TGG | 0.572385 | 4_2:-11090985 | None:intergenic |
| AATCATAATATCTGATCCAA+AGG | 0.575547 | 4_2:+11091741 | Msa0588650:CDS |
| CCACAAGTAATAAGAAAACT+GGG | 0.585329 | 4_2:-11089652 | None:intergenic |
| GTAGCCAAAGGAGAAAAGAA+AGG | 0.585350 | 4_2:+11090443 | Msa0588650:CDS |
| CAACACAAAGTGATCCAGAA+AGG | 0.589772 | 4_2:+11090470 | Msa0588650:CDS |
| AGATGAATTCAGTTACGAGA+AGG | 0.591940 | 4_2:+11090251 | Msa0588650:CDS |
| CAAAGGACCAAACAGTGCAA+TGG | 0.594682 | 4_2:-11089020 | None:intergenic |
| GCATCCATGTGTTCCGCGTG+CGG | 0.599991 | 4_2:+11092001 | Msa0588650:CDS |
| GTAAGCTATGGGGCGAACCA+AGG | 0.606777 | 4_2:+11092080 | Msa0588650:three_prime_UTR |
| ATCCATATTGCAGCTAAACA+AGG | 0.618571 | 4_2:-11091393 | None:intergenic |
| AGTGAACAAATCATAAAGAG+AGG | 0.621723 | 4_2:+11092136 | Msa0588650:three_prime_UTR |
| GGAACACATGGATGCAGTAG+AGG | 0.622725 | 4_2:-11091993 | None:intergenic |
| AGGTTGTTAGTTATATCCGA+AGG | 0.628706 | 4_2:+11090205 | Msa0588650:intron |
| TTTATGATTTGTTCACTCCG+AGG | 0.642993 | 4_2:-11092130 | None:intergenic |
| AACGATCCGATTCAGGAACA+AGG | 0.643629 | 4_2:-11091654 | None:intergenic |
| GATAGGTCAGAATTGGTGGA+TGG | 0.649913 | 4_2:+11090538 | Msa0588650:CDS |
| CTTTGTGTCGAAGTAGCCAA+AGG | 0.650218 | 4_2:+11090431 | Msa0588650:CDS |
| TTCGAAAATAGACATCTGGA+CGG | 0.651364 | 4_2:+11092353 | Msa0588650:three_prime_UTR |
| ACAGCCACTTTAGAATGGGA+AGG | 0.656412 | 4_2:+11090981 | Msa0588650:CDS |
| GTGATAATCAATATCTGTGG+TGG | 0.661957 | 4_2:+11089674 | Msa0588650:CDS |
| AGATTAGTAGGCTACATAGG+AGG | 0.662514 | 4_2:+11092207 | Msa0588650:three_prime_UTR |
| TATGTAATTGGAATAGCGCG+AGG | 0.670079 | 4_2:+11091014 | Msa0588650:CDS |
| CATGATCGTTGTAAGCTATG+GGG | 0.688810 | 4_2:+11092070 | Msa0588650:exon |
| GACAAGTAAGGTAACTACAG+TGG | 0.693740 | 4_2:-11089603 | None:intergenic |
| GTGGTGATAATCAATATCTG+TGG | 0.725103 | 4_2:+11089671 | Msa0588650:CDS |
| TTGAGACTTAAATCTCAGCG+AGG | 0.732086 | 4_2:+11092107 | Msa0588650:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATCAATTTTCATTAA+AGG | - | chr4_2:11089766-11089785 | None:intergenic | 10.0% |
| !! | AAATTGAAATAAAAATAATC+AGG | - | chr4_2:11091622-11091641 | None:intergenic | 10.0% |
| !! | AATTAAATCAAAGAAAAAGA+GGG | - | chr4_2:11088641-11088660 | None:intergenic | 15.0% |
| !!! | ATATATACTTTAATTTCTTG+AGG | + | chr4_2:11088745-11088764 | Msa0588650:intron | 15.0% |
| !!! | AAGAAATTTAAGACATTTTT+CGG | - | chr4_2:11090891-11090910 | None:intergenic | 15.0% |
| !! | TAAATTTCTTTGATGTAAAT+TGG | + | chr4_2:11090901-11090920 | Msa0588650:intron | 15.0% |
| !! | TTGATCACTTATTTATACTT+TGG | + | chr4_2:11088514-11088533 | Msa0588650:CDS | 20.0% |
| !! | CAATTAAATCAAAGAAAAAG+AGG | - | chr4_2:11088642-11088661 | None:intergenic | 20.0% |
| !! | GTAAAAAAGTTGAAATTATG+TGG | - | chr4_2:11088665-11088684 | None:intergenic | 20.0% |
| !! | GCACAAAATTATTATTTCAT+AGG | - | chr4_2:11088802-11088821 | None:intergenic | 20.0% |
| !!! | GAAATAATAATTTTGTGCAA+TGG | + | chr4_2:11088804-11088823 | Msa0588650:intron | 20.0% |
| !! | GTTTATATATGATCAGTATT+TGG | + | chr4_2:11088948-11088967 | Msa0588650:CDS | 20.0% |
| !! | GAAGAGTTAACAATATATTT+GGG | - | chr4_2:11089089-11089108 | None:intergenic | 20.0% |
| !! | AGAAGAGTTAACAATATATT+TGG | - | chr4_2:11089090-11089109 | None:intergenic | 20.0% |
| !! | TAAGCATATGTTATGATTAA+CGG | - | chr4_2:11089364-11089383 | None:intergenic | 20.0% |
| !!! | AAAACCCTTCATTTTTTTAT+TGG | + | chr4_2:11089525-11089544 | Msa0588650:intron | 20.0% |
| !!! | TTTTTCATTTTTCATCATCA+TGG | + | chr4_2:11089881-11089900 | Msa0588650:intron | 20.0% |
| !!! | TAAATTTTGAGAGATTGTAA+AGG | - | chr4_2:11089910-11089929 | None:intergenic | 20.0% |
| !! | ATAAAGACAACAAAAAATCA+AGG | + | chr4_2:11090722-11090741 | Msa0588650:intron | 20.0% |
| !! | TAAAGACAACAAAAAATCAA+GGG | + | chr4_2:11090723-11090742 | Msa0588650:intron | 20.0% |
| !! | ATAATAGCATAAACACTTAT+AGG | + | chr4_2:11090775-11090794 | Msa0588650:intron | 20.0% |
| !!! | AGTAATTGAAATTTTATCAG+CGG | - | chr4_2:11090937-11090956 | None:intergenic | 20.0% |
| !! | TTATGTATGACTTCAAAAAA+TGG | + | chr4_2:11091183-11091202 | Msa0588650:intron | 20.0% |
| !!! | TAAAAAAACTTTTGATGTAG+CGG | - | chr4_2:11091228-11091247 | None:intergenic | 20.0% |
| !!! | ATAACCAAGGTTTTAAATTA+CGG | - | chr4_2:11091273-11091292 | None:intergenic | 20.0% |
| !! | ATACATGTTTATGTATGATT+TGG | + | chr4_2:11091349-11091368 | Msa0588650:intron | 20.0% |
| !!! | TTTATCCTCATATATTTTGA+TGG | + | chr4_2:11091428-11091447 | Msa0588650:CDS | 20.0% |
| !!! | TTATCCTCATATATTTTGAT+GGG | + | chr4_2:11091429-11091448 | Msa0588650:CDS | 20.0% |
| !! | ATTTCACATTTGAAAGAATA+TGG | - | chr4_2:11091543-11091562 | None:intergenic | 20.0% |
| ! | AAATAAGTGATCAAAGAAGA+AGG | - | chr4_2:11088508-11088527 | None:intergenic | 25.0% |
| !!! | ATAGAGCATGTTTTGATAAA+AGG | - | chr4_2:11088713-11088732 | None:intergenic | 25.0% |
| !! | CTTTAATTTCTTGAGGAAAA+AGG | + | chr4_2:11088752-11088771 | Msa0588650:intron | 25.0% |
| !!! | ATTTTTGTTTATGCAGAATG+TGG | + | chr4_2:11088912-11088931 | Msa0588650:intron | 25.0% |
| !!! | TTTTTGTTTATGCAGAATGT+GGG | + | chr4_2:11088913-11088932 | Msa0588650:intron | 25.0% |
| !! | AATCTGTCTTTTATTATTGC+TGG | + | chr4_2:11089578-11089597 | Msa0588650:CDS | 25.0% |
| ! | TTTGTGTACCATACATAAAT+CGG | - | chr4_2:11089975-11089994 | None:intergenic | 25.0% |
| ! | GAGCAAAAAAGTAATTTGAT+TGG | - | chr4_2:11090117-11090136 | None:intergenic | 25.0% |
| !!! | TATAGTTTTAACTAGGCATT+TGG | - | chr4_2:11090147-11090166 | None:intergenic | 25.0% |
| ! | AAATGCCTAGTTAAAACTAT+AGG | + | chr4_2:11090146-11090165 | Msa0588650:intron | 25.0% |
| !!! | TTCTTCCTATAGTTTTAACT+AGG | - | chr4_2:11090154-11090173 | None:intergenic | 25.0% |
| !!! | AAGTATGTTTTATTCTGTAC+AGG | + | chr4_2:11090185-11090204 | Msa0588650:intron | 25.0% |
| ! | TACAAAGCTTATAATGAAAC+CGG | - | chr4_2:11090314-11090333 | None:intergenic | 25.0% |
| !!! | ACTTGCAAATGTTTTTAGTA+AGG | - | chr4_2:11090699-11090718 | None:intergenic | 25.0% |
| ! | TCAAAAAAATCAATCCAAAC+AGG | - | chr4_2:11090749-11090768 | None:intergenic | 25.0% |
| !!! | AGCACTTTAAAATCATTTGT+GGG | - | chr4_2:11091147-11091166 | None:intergenic | 25.0% |
| !!! | TATCCTCATATATTTTGATG+GGG | + | chr4_2:11091430-11091449 | Msa0588650:CDS | 25.0% |
| ! | TTATGAAGAAAAAGGAACAT+TGG | - | chr4_2:11091590-11091609 | None:intergenic | 25.0% |
| ! | CAAGATGATTATGAAGAAAA+AGG | - | chr4_2:11091598-11091617 | None:intergenic | 25.0% |
| !! | CTTTTTCTTCATAATCATCT+TGG | + | chr4_2:11091596-11091615 | Msa0588650:intron | 25.0% |
| ! | TATTATGATTCCCATAACAT+AGG | - | chr4_2:11091731-11091750 | None:intergenic | 25.0% |
| ! | AATCATAATATCTGATCCAA+AGG | + | chr4_2:11091741-11091760 | Msa0588650:CDS | 25.0% |
| !!! | TTAGTTTTAAAACTCACCTT+TGG | - | chr4_2:11091760-11091779 | None:intergenic | 25.0% |
| ! | TAGTATATACATATTTGGGT+TGG | - | chr4_2:11091795-11091814 | None:intergenic | 25.0% |
| ! | AACCCAAATATGTATATACT+AGG | + | chr4_2:11091794-11091813 | Msa0588650:intron | 25.0% |
| ! | ACCCAAATATGTATATACTA+GGG | + | chr4_2:11091795-11091814 | Msa0588650:intron | 25.0% |
| ! | ACCCTAGTATATACATATTT+GGG | - | chr4_2:11091799-11091818 | None:intergenic | 25.0% |
| ! | AACCCTAGTATATACATATT+TGG | - | chr4_2:11091800-11091819 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTATCATTTC+TGG | + | chr4_2:11091951-11091970 | Msa0588650:CDS | 25.0% |
| !! | TTTTTCACTTTGACAAACTA+TGG | + | chr4_2:11092031-11092050 | Msa0588650:CDS | 25.0% |
| ! | TAAATAACTGCATTGGATTA+TGG | + | chr4_2:11092295-11092314 | Msa0588650:three_prime_UTR | 25.0% |
| ! | TGGATGAAAGAGAAATTTTG+AGG | + | chr4_2:11088452-11088471 | Msa0588650:CDS | 30.0% |
| ! | GGATGAAAGAGAAATTTTGA+GGG | + | chr4_2:11088453-11088472 | Msa0588650:CDS | 30.0% |
| AGAAGGAAAATCTTGTTCAT+TGG | - | chr4_2:11088491-11088510 | None:intergenic | 30.0% | |
| ! | ATTTTGTGCAATGGAACAAA+AGG | + | chr4_2:11088813-11088832 | Msa0588650:intron | 30.0% |
| ! | TTTTGTGCAATGGAACAAAA+GGG | + | chr4_2:11088814-11088833 | Msa0588650:intron | 30.0% |
| ! | TGATAAGTTGACTTACCAAA+AGG | + | chr4_2:11089057-11089076 | Msa0588650:CDS | 30.0% |
| !!! | CAAATCGAGATTTTAGTTTG+CGG | + | chr4_2:11089115-11089134 | Msa0588650:intron | 30.0% |
| ! | GGTACTTGACATCAAAATTT+TGG | - | chr4_2:11089217-11089236 | None:intergenic | 30.0% |
| CACATAAAACCCAAATTACA+CGG | - | chr4_2:11089238-11089257 | None:intergenic | 30.0% | |
| !! | TTGGGTTTTATGTGTGTTTT+TGG | + | chr4_2:11089244-11089263 | Msa0588650:intron | 30.0% |
| CCTGCCAATAAAAAAATGAA+GGG | - | chr4_2:11089532-11089551 | None:intergenic | 30.0% | |
| ACCTGCCAATAAAAAAATGA+AGG | - | chr4_2:11089533-11089552 | None:intergenic | 30.0% | |
| CCACAAGTAATAAGAAAACT+GGG | - | chr4_2:11089655-11089674 | None:intergenic | 30.0% | |
| ACCACAAGTAATAAGAAAAC+TGG | - | chr4_2:11089656-11089675 | None:intergenic | 30.0% | |
| CTATCTTGATAGAAAGAGAA+TGG | + | chr4_2:11089726-11089745 | Msa0588650:CDS | 30.0% | |
| TTCACAGTATGACTTCTTAA+AGG | + | chr4_2:11090030-11090049 | Msa0588650:intron | 30.0% | |
| GTATGACTTCTTAAAGGAAA+TGG | + | chr4_2:11090036-11090055 | Msa0588650:intron | 30.0% | |
| AGTTATAGCAGATGCTTTAA+GGG | - | chr4_2:11090338-11090357 | None:intergenic | 30.0% | |
| AAGTTATAGCAGATGCTTTA+AGG | - | chr4_2:11090339-11090358 | None:intergenic | 30.0% | |
| ! | ATAACTTTAGCACTTTGGAA+TGG | + | chr4_2:11090352-11090371 | Msa0588650:CDS | 30.0% |
| AAATCTCTTATGTTGATGCT+TGG | + | chr4_2:11090596-11090615 | Msa0588650:CDS | 30.0% | |
| CATATATCAGCTATTAGAAC+TGG | + | chr4_2:11091092-11091111 | Msa0588650:CDS | 30.0% | |
| !! | GAGCACTTTAAAATCATTTG+TGG | - | chr4_2:11091148-11091167 | None:intergenic | 30.0% |
| TTCACTAGAATTCATAACCA+AGG | - | chr4_2:11091286-11091305 | None:intergenic | 30.0% | |
| TCAGTCCTTTATGGATTTAT+TGG | + | chr4_2:11091705-11091724 | Msa0588650:CDS | 30.0% | |
| ATAGGCCAATAAATCCATAA+AGG | - | chr4_2:11091713-11091732 | None:intergenic | 30.0% | |
| ! | GATTTATTGGCCTATGTTAT+GGG | + | chr4_2:11091718-11091737 | Msa0588650:CDS | 30.0% |
| ATTTAAGTCTCAACTTTCCT+TGG | - | chr4_2:11092100-11092119 | None:intergenic | 30.0% | |
| AGTGAACAAATCATAAAGAG+AGG | + | chr4_2:11092136-11092155 | Msa0588650:three_prime_UTR | 30.0% | |
| ACAAATCATAAAGAGAGGTT+TGG | + | chr4_2:11092141-11092160 | Msa0588650:three_prime_UTR | 30.0% | |
| ATGCAGTTATTTAGAAACGT+GGG | - | chr4_2:11092288-11092307 | None:intergenic | 30.0% | |
| AATGCAGTTATTTAGAAACG+TGG | - | chr4_2:11092289-11092308 | None:intergenic | 30.0% | |
| ACGTTTCTAAATAACTGCAT+TGG | + | chr4_2:11092288-11092307 | Msa0588650:intron | 30.0% | |
| TTTGTTCGAAAATAGACATC+TGG | + | chr4_2:11092349-11092368 | Msa0588650:three_prime_UTR | 30.0% | |
| ! | CAGAAAAACTGTGTTTTATC+TGG | + | chr4_2:11092376-11092395 | Msa0588650:three_prime_UTR | 30.0% |
| GCATGATGAGAAATATTACC+TGG | - | chr4_2:11088563-11088582 | None:intergenic | 35.0% | |
| TTTGTGCAATGGAACAAAAG+GGG | + | chr4_2:11088815-11088834 | Msa0588650:intron | 35.0% | |
| ! | AGAATGTGGGAATTTTCTGT+TGG | + | chr4_2:11088926-11088945 | Msa0588650:intron | 35.0% |
| !! | ATATTTGGGATCACACCTTT+TGG | - | chr4_2:11089075-11089094 | None:intergenic | 35.0% |
| ! | ATGTCAAGTACCGTGTAATT+TGG | + | chr4_2:11089225-11089244 | Msa0588650:intron | 35.0% |
| ! | TGTCAAGTACCGTGTAATTT+GGG | + | chr4_2:11089226-11089245 | Msa0588650:intron | 35.0% |
| !!! | CCCTTCATTTTTTTATTGGC+AGG | + | chr4_2:11089529-11089548 | Msa0588650:intron | 35.0% |
| !!! | ATTGGCAGGTTTTGAAATTG+TGG | + | chr4_2:11089543-11089562 | Msa0588650:intron | 35.0% |
| CAAAGATGAGTAGACAAGTA+AGG | - | chr4_2:11089618-11089637 | None:intergenic | 35.0% | |
| ! | CCCAGTTTTCTTATTACTTG+TGG | + | chr4_2:11089652-11089671 | Msa0588650:CDS | 35.0% |
| GTGGTGATAATCAATATCTG+TGG | + | chr4_2:11089671-11089690 | Msa0588650:CDS | 35.0% | |
| GTGATAATCAATATCTGTGG+TGG | + | chr4_2:11089674-11089693 | Msa0588650:CDS | 35.0% | |
| GAAGTCATACTGTGAAACAT+TGG | - | chr4_2:11090026-11090045 | None:intergenic | 35.0% | |
| AGGTTGTTAGTTATATCCGA+AGG | + | chr4_2:11090205-11090224 | Msa0588650:intron | 35.0% | |
| AGATGAATTCAGTTACGAGA+AGG | + | chr4_2:11090251-11090270 | Msa0588650:CDS | 35.0% | |
| ATAATGAAACCGGTTATGAC+AGG | - | chr4_2:11090304-11090323 | None:intergenic | 35.0% | |
| CTGCTATAACTTTAGCACTT+TGG | + | chr4_2:11090347-11090366 | Msa0588650:CDS | 35.0% | |
| ! | TTTGGAATGGTGTTTCTGTT+TGG | + | chr4_2:11090365-11090384 | Msa0588650:CDS | 35.0% |
| ! | TTGGAATGGTGTTTCTGTTT+GGG | + | chr4_2:11090366-11090385 | Msa0588650:CDS | 35.0% |
| !!! | GGAGTATTGGCTTTTTACAT+CGG | + | chr4_2:11090390-11090409 | Msa0588650:CDS | 35.0% |
| ! | CTTTTTACATCGGTGTATAG+TGG | + | chr4_2:11090400-11090419 | Msa0588650:CDS | 35.0% |
| ! | AAAGCCTTTCTTTTCTCCTT+TGG | - | chr4_2:11090450-11090469 | None:intergenic | 35.0% |
| GAAGTTGAATTGTTCCTTTC+TGG | - | chr4_2:11090487-11090506 | None:intergenic | 35.0% | |
| !! | GATAGTTTGCTTCATGATAC+TGG | + | chr4_2:11090514-11090533 | Msa0588650:CDS | 35.0% |
| !!! | TGCTATTTTTCACTGTACTC+AGG | + | chr4_2:11090668-11090687 | Msa0588650:CDS | 35.0% |
| !! | AGACATTTTTCGGTAGTGTT+TGG | - | chr4_2:11090881-11090900 | None:intergenic | 35.0% |
| TCAATTACTTGCTTCAGCTT+TGG | + | chr4_2:11090948-11090967 | Msa0588650:intron | 35.0% | |
| ! | TATACCTTCCCATTCTAAAG+TGG | - | chr4_2:11090988-11091007 | None:intergenic | 35.0% |
| GGTATACCTGCATATGTAAT+TGG | + | chr4_2:11091002-11091021 | Msa0588650:CDS | 35.0% | |
| GCTATTCCAATTACATATGC+AGG | - | chr4_2:11091011-11091030 | None:intergenic | 35.0% | |
| !! | GATATATGATACTCTAGAGC+AGG | - | chr4_2:11091080-11091099 | None:intergenic | 35.0% |
| ! | TATGTATGATTTGGATGCAG+TGG | + | chr4_2:11091358-11091377 | Msa0588650:intron | 35.0% |
| ! | TACCTTGTTTAGCTGCAATA+TGG | + | chr4_2:11091391-11091410 | Msa0588650:CDS | 35.0% |
| ATCCATATTGCAGCTAAACA+AGG | - | chr4_2:11091396-11091415 | None:intergenic | 35.0% | |
| GCTGCAATATGGATCTATAA+TGG | + | chr4_2:11091402-11091421 | Msa0588650:CDS | 35.0% | |
| ACTCCCCATCAAAATATATG+AGG | - | chr4_2:11091436-11091455 | None:intergenic | 35.0% | |
| ! | GGATTTATTGGCCTATGTTA+TGG | + | chr4_2:11091717-11091736 | Msa0588650:CDS | 35.0% |
| !! | TTTATGATTTGTTCACTCCG+AGG | - | chr4_2:11092133-11092152 | None:intergenic | 35.0% |
| ! | TTTGGCTGTGCAATTTTTGT+TGG | + | chr4_2:11092159-11092178 | Msa0588650:three_prime_UTR | 35.0% |
| GGTGAAATCATGAGATTAGT+AGG | + | chr4_2:11092195-11092214 | Msa0588650:three_prime_UTR | 35.0% | |
| ATGAGATTAGTAGGCTACAT+AGG | + | chr4_2:11092204-11092223 | Msa0588650:three_prime_UTR | 35.0% | |
| TGCAGTTATTTAGAAACGTG+GGG | - | chr4_2:11092287-11092306 | None:intergenic | 35.0% | |
| TTCGAAAATAGACATCTGGA+CGG | + | chr4_2:11092353-11092372 | Msa0588650:three_prime_UTR | 35.0% | |
| !! | TACTTTCGAAGTGCTTTTGA+AGG | + | chr4_2:11092404-11092423 | Msa0588650:three_prime_UTR | 35.0% |
| !!! | TTGGCCACTTTTTAGCTAGA+TGG | + | chr4_2:11088533-11088552 | Msa0588650:CDS | 40.0% |
| !!! | TGGCCACTTTTTAGCTAGAT+GGG | + | chr4_2:11088534-11088553 | Msa0588650:CDS | 40.0% |
| AACCCCATCTAGCTAAAAAG+TGG | - | chr4_2:11088540-11088559 | None:intergenic | 40.0% | |
| TTGTGCAATGGAACAAAAGG+GGG | + | chr4_2:11088816-11088835 | Msa0588650:intron | 40.0% | |
| !!! | AAGGGGGTCACTTTTTGTTT+TGG | + | chr4_2:11088832-11088851 | Msa0588650:intron | 40.0% |
| CTGCTGTATGCAGCAATATA+TGG | + | chr4_2:11088980-11088999 | Msa0588650:CDS | 40.0% | |
| TTGGTCCTTTGATTGGAACA+TGG | + | chr4_2:11089032-11089051 | Msa0588650:CDS | 40.0% | |
| TGGTCCTTTGATTGGAACAT+GGG | + | chr4_2:11089033-11089052 | Msa0588650:CDS | 40.0% | |
| TCAACCCATGTTCCAATCAA+AGG | - | chr4_2:11089040-11089059 | None:intergenic | 40.0% | |
| CCAAATTCATAGCAGCAACA+AGG | - | chr4_2:11089493-11089512 | None:intergenic | 40.0% | |
| CCTTGTTGCTGCTATGAATT+TGG | + | chr4_2:11089490-11089509 | Msa0588650:intron | 40.0% | |
| !!! | GCAGGTTTTGAAATTGTGGT+TGG | + | chr4_2:11089547-11089566 | Msa0588650:intron | 40.0% |
| GACAAGTAAGGTAACTACAG+TGG | - | chr4_2:11089606-11089625 | None:intergenic | 40.0% | |
| ATCAATATCTGTGGTGGCAT+TGG | + | chr4_2:11089680-11089699 | Msa0588650:CDS | 40.0% | |
| ATTCATCTTCGTCAGCAGTT+CGG | - | chr4_2:11090239-11090258 | None:intergenic | 40.0% | |
| TTTCTGTTTGGGTGGAGTAT+TGG | + | chr4_2:11090377-11090396 | Msa0588650:CDS | 40.0% | |
| GTAGCCAAAGGAGAAAAGAA+AGG | + | chr4_2:11090443-11090462 | Msa0588650:CDS | 40.0% | |
| CAACACAAAGTGATCCAGAA+AGG | + | chr4_2:11090470-11090489 | Msa0588650:CDS | 40.0% | |
| TGCTTCATGATACTGGTGAT+AGG | + | chr4_2:11090521-11090540 | Msa0588650:CDS | 40.0% | |
| TACTGGTGATAGGTCAGAAT+TGG | + | chr4_2:11090531-11090550 | Msa0588650:CDS | 40.0% | |
| ! | AATTGGTGGATGGAAAAAGC+AGG | + | chr4_2:11090548-11090567 | Msa0588650:CDS | 40.0% |
| !! | GCAGGAAAACAATTTTCGAG+TGG | + | chr4_2:11090566-11090585 | Msa0588650:CDS | 40.0% |
| CAAAAAATCAAGGGCCTGTT+TGG | + | chr4_2:11090732-11090751 | Msa0588650:intron | 40.0% | |
| ! | GGACTATTTGAGAGAGCTTT+TGG | + | chr4_2:11090796-11090815 | Msa0588650:intron | 40.0% |
| ! | ACATGTCCATAAGCTGCTTT+CGG | + | chr4_2:11090831-11090850 | Msa0588650:intron | 40.0% |
| ! | GTTTGGAACTTGAGAGCTTA+TGG | - | chr4_2:11090864-11090883 | None:intergenic | 40.0% |
| ! | TGATGACAGCCACTTTAGAA+TGG | + | chr4_2:11090976-11090995 | Msa0588650:CDS | 40.0% |
| !! | GATGACAGCCACTTTAGAAT+GGG | + | chr4_2:11090977-11090996 | Msa0588650:CDS | 40.0% |
| TATGTAATTGGAATAGCGCG+AGG | + | chr4_2:11091014-11091033 | Msa0588650:CDS | 40.0% | |
| CAGCTATTAGAACTGGACTT+TGG | + | chr4_2:11091099-11091118 | Msa0588650:CDS | 40.0% | |
| GAACTGGACTTTGGTCTATT+TGG | + | chr4_2:11091108-11091127 | Msa0588650:CDS | 40.0% | |
| ACTTTGGTCTATTTGGTCTC+AGG | + | chr4_2:11091115-11091134 | Msa0588650:CDS | 40.0% | |
| TTGCAGCTAAACAAGGTAGA+AGG | - | chr4_2:11091389-11091408 | None:intergenic | 40.0% | |
| GTCTGTACTTCAACAAATGC+AGG | + | chr4_2:11091494-11091513 | Msa0588650:intron | 40.0% | |
| ACAGAACCTTGTTCCTGAAT+CGG | + | chr4_2:11091648-11091667 | Msa0588650:intron | 40.0% | |
| ACAATCAAACGATCCGATTC+AGG | - | chr4_2:11091664-11091683 | None:intergenic | 40.0% | |
| GAATCGGATCGTTTGATTGT+TGG | + | chr4_2:11091664-11091683 | Msa0588650:CDS | 40.0% | |
| GAGTTCACTTCAGTCCTTTA+TGG | + | chr4_2:11091696-11091715 | Msa0588650:CDS | 40.0% | |
| GAATGTGACATACAGAGAAC+AGG | - | chr4_2:11091918-11091937 | None:intergenic | 40.0% | |
| GTTCTCTGTATGTCACATTC+AGG | + | chr4_2:11091918-11091937 | Msa0588650:intron | 40.0% | |
| TATGTCACATTCAGGAGTTC+TGG | + | chr4_2:11091926-11091945 | Msa0588650:intron | 40.0% | |
| CACTTTGACAAACTATGGTG+TGG | + | chr4_2:11092036-11092055 | Msa0588650:CDS | 40.0% | |
| TGCATGATCGTTGTAAGCTA+TGG | + | chr4_2:11092068-11092087 | Msa0588650:exon | 40.0% | |
| GCATGATCGTTGTAAGCTAT+GGG | + | chr4_2:11092069-11092088 | Msa0588650:exon | 40.0% | |
| CATGATCGTTGTAAGCTATG+GGG | + | chr4_2:11092070-11092089 | Msa0588650:exon | 40.0% | |
| TTGAGACTTAAATCTCAGCG+AGG | + | chr4_2:11092107-11092126 | Msa0588650:three_prime_UTR | 40.0% | |
| TTTGTTGGACTTCAGAGTGA+AGG | + | chr4_2:11092174-11092193 | Msa0588650:three_prime_UTR | 40.0% | |
| AGATTAGTAGGCTACATAGG+AGG | + | chr4_2:11092207-11092226 | Msa0588650:three_prime_UTR | 40.0% | |
| TTCTCTCAAGCCCTTACTTT+AGG | - | chr4_2:11092254-11092273 | None:intergenic | 40.0% | |
| !! | TTTCGAAGTGCTTTTGAAGG+CGG | + | chr4_2:11092407-11092426 | Msa0588650:three_prime_UTR | 40.0% |
| AAGGTTTCTCCACTTACTCT+AGG | + | chr4_2:11092432-11092451 | Msa0588650:three_prime_UTR | 40.0% | |
| AGGTTTCTCCACTTACTCTA+GGG | + | chr4_2:11092433-11092452 | Msa0588650:three_prime_UTR | 40.0% | |
| !!! | GGCCACTTTTTAGCTAGATG+GGG | + | chr4_2:11088535-11088554 | Msa0588650:CDS | 45.0% |
| !! | TTTTAGCTAGATGGGGTTCC+AGG | + | chr4_2:11088542-11088561 | Msa0588650:CDS | 45.0% |
| TCTGCTTCCATTGCACTGTT+TGG | + | chr4_2:11089013-11089032 | Msa0588650:CDS | 45.0% | |
| CAAAGGACCAAACAGTGCAA+TGG | - | chr4_2:11089023-11089042 | None:intergenic | 45.0% | |
| GCACTGTTTGGTCCTTTGAT+TGG | + | chr4_2:11089025-11089044 | Msa0588650:CDS | 45.0% | |
| GTCAAATGTGATTCGCGTTG+TGG | + | chr4_2:11089179-11089198 | Msa0588650:intron | 45.0% | |
| ! | GGAGTACTTTCAACTCTTGC+TGG | + | chr4_2:11089701-11089720 | Msa0588650:CDS | 45.0% |
| CTTCTTGCACCTGTCATAAC+CGG | + | chr4_2:11090292-11090311 | Msa0588650:CDS | 45.0% | |
| ! | GAATGGTGTTTCTGTTTGGG+TGG | + | chr4_2:11090369-11090388 | Msa0588650:CDS | 45.0% |
| CTTTGTGTCGAAGTAGCCAA+AGG | + | chr4_2:11090431-11090450 | Msa0588650:CDS | 45.0% | |
| TGGTGATAGGTCAGAATTGG+TGG | + | chr4_2:11090534-11090553 | Msa0588650:CDS | 45.0% | |
| GATAGGTCAGAATTGGTGGA+TGG | + | chr4_2:11090538-11090557 | Msa0588650:CDS | 45.0% | |
| GATAAGCCGAAAGCAGCTTA+TGG | - | chr4_2:11090840-11090859 | None:intergenic | 45.0% | |
| !! | ACAGCCACTTTAGAATGGGA+AGG | + | chr4_2:11090981-11091000 | Msa0588650:CDS | 45.0% |
| ! | CGAGGAATAAGCGCTGTAAT+CGG | + | chr4_2:11091032-11091051 | Msa0588650:CDS | 45.0% |
| ATGTCTCTGCAACTGTATCG+CGG | + | chr4_2:11091247-11091266 | Msa0588650:intron | 45.0% | |
| ! | GCGGCCGTAATTTAAAACCT+TGG | + | chr4_2:11091266-11091285 | Msa0588650:intron | 45.0% |
| AACGATCCGATTCAGGAACA+AGG | - | chr4_2:11091657-11091676 | None:intergenic | 45.0% | |
| TCGGATCGTTTGATTGTTGG+AGG | + | chr4_2:11091667-11091686 | Msa0588650:CDS | 45.0% | |
| GAAAAATATGCTTCCGCACG+CGG | - | chr4_2:11092017-11092036 | None:intergenic | 45.0% | |
| !! | AAGCCCTTACTTTAGGACCT+CGG | - | chr4_2:11092247-11092266 | None:intergenic | 45.0% |
| !! | TTCGAAGTGCTTTTGAAGGC+GGG | + | chr4_2:11092408-11092427 | Msa0588650:three_prime_UTR | 45.0% |
| ! | CAGGCTGGCCGATTTATGTA+TGG | + | chr4_2:11089964-11089983 | Msa0588650:intron | 50.0% |
| CAGTTCGGATGGTTGACCTT+CGG | - | chr4_2:11090224-11090243 | None:intergenic | 50.0% | |
| ATCTTCGTCAGCAGTTCGGA+TGG | - | chr4_2:11090235-11090254 | None:intergenic | 50.0% | |
| TGGCTACTTCGACACAAAGC+AGG | - | chr4_2:11090430-11090449 | None:intergenic | 50.0% | |
| CAGCAAGAAGTTGTGCTTCC+TGG | + | chr4_2:11090631-11090650 | Msa0588650:CDS | 50.0% | |
| AGCGGCTTAGATCGCTATCA+TGG | - | chr4_2:11091210-11091229 | None:intergenic | 50.0% | |
| GGAACACATGGATGCAGTAG+AGG | - | chr4_2:11091996-11092015 | None:intergenic | 50.0% | |
| CTTAAATCTCAGCGAGGCCT+CGG | + | chr4_2:11092113-11092132 | Msa0588650:three_prime_UTR | 50.0% | |
| CATAGGAGGCCGAGTAAGTT+TGG | + | chr4_2:11092221-11092240 | Msa0588650:intron | 50.0% | |
| TTGGCCGAGGTCCTAAAGTA+AGG | + | chr4_2:11092240-11092259 | Msa0588650:intron | 50.0% | |
| TGGCCGAGGTCCTAAAGTAA+GGG | + | chr4_2:11092241-11092260 | Msa0588650:intron | 50.0% | |
| !! | AGTGCTTTTGAAGGCGGGAA+AGG | + | chr4_2:11092413-11092432 | Msa0588650:three_prime_UTR | 50.0% |
| GCTGCATACAGCAGTGAGTC+TGG | - | chr4_2:11088974-11088993 | None:intergenic | 55.0% | |
| CTAGGTGTGACCGTGTGAGT+CGG | - | chr4_2:11089943-11089962 | None:intergenic | 55.0% | |
| ATAAATCGGCCAGCCTGCCT+AGG | - | chr4_2:11089961-11089980 | None:intergenic | 55.0% | |
| GACAGGTGCAAGAAGCTTGC+AGG | - | chr4_2:11090287-11090306 | None:intergenic | 55.0% | |
| !! | TGTGCTTCCTGGACTAGCTC+TGG | + | chr4_2:11090642-11090661 | Msa0588650:CDS | 55.0% |
| AGCAAAGCCAGAGCTAGTCC+AGG | - | chr4_2:11090652-11090671 | None:intergenic | 55.0% | |
| !! | TGGGGAGTGTCGCATTGTCT+CGG | + | chr4_2:11091448-11091467 | Msa0588650:CDS | 55.0% |
| AGTGTCGCATTGTCTCGGCT+TGG | + | chr4_2:11091453-11091472 | Msa0588650:CDS | 55.0% | |
| !! | CATTGTCTCGGCTTGGACTC+TGG | + | chr4_2:11091460-11091479 | Msa0588650:CDS | 55.0% |
| GTAAGCTATGGGGCGAACCA+AGG | + | chr4_2:11092080-11092099 | Msa0588650:three_prime_UTR | 55.0% | |
| GGACCTCGGCCAAACTTACT+CGG | - | chr4_2:11092233-11092252 | None:intergenic | 55.0% | |
| AGGGTCGACCCTAGAGTAAG+TGG | - | chr4_2:11092444-11092463 | None:intergenic | 55.0% | |
| ! | ACTCGTCCAGCCGACTCACA+CGG | + | chr4_2:11089930-11089949 | Msa0588650:intron | 60.0% |
| CGACTCACACGGTCACACCT+AGG | + | chr4_2:11089941-11089960 | Msa0588650:intron | 60.0% | |
| TCACACGGTCACACCTAGGC+AGG | + | chr4_2:11089945-11089964 | Msa0588650:intron | 60.0% | |
| GCATCCATGTGTTCCGCGTG+CGG | + | chr4_2:11092001-11092020 | Msa0588650:CDS | 60.0% | |
| AGGCCGAGTAAGTTTGGCCG+AGG | + | chr4_2:11092227-11092246 | Msa0588650:intron | 60.0% | |
| GTGTGACCGTGTGAGTCGGC+TGG | - | chr4_2:11089939-11089958 | None:intergenic | 65.0% | |
| ACGGTCACACCTAGGCAGGC+TGG | + | chr4_2:11089949-11089968 | Msa0588650:intron | 65.0% | |
| GCTTCCGCACGCGGAACACA+TGG | - | chr4_2:11092008-11092027 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 11088451 | 11092474 | 11088451 | ID=Msa0588650;Name=Msa0588650 |
| chr4_2 | mRNA | 11088451 | 11092474 | 11088451 | ID=Msa0588650-mRNA-1;Parent=Msa0588650;Name=Msa0588650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.87|0.77|1|0.87|0.77|9|344|493 |
| chr4_2 | exon | 11088451 | 11088563 | 11088451 | ID=Msa0588650-mRNA-1:exon:3207;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11088928 | 11089078 | 11088928 | ID=Msa0588650-mRNA-1:exon:3208;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11089551 | 11089747 | 11089551 | ID=Msa0588650-mRNA-1:exon:3209;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11090207 | 11090689 | 11090207 | ID=Msa0588650-mRNA-1:exon:3210;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11090965 | 11091136 | 11090965 | ID=Msa0588650-mRNA-1:exon:3211;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11091378 | 11091497 | 11091378 | ID=Msa0588650-mRNA-1:exon:3212;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11091652 | 11091762 | 11091652 | ID=Msa0588650-mRNA-1:exon:3213;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11091940 | 11092233 | 11091940 | ID=Msa0588650-mRNA-1:exon:3214;Parent=Msa0588650-mRNA-1 |
| chr4_2 | exon | 11092290 | 11092474 | 11092290 | ID=Msa0588650-mRNA-1:exon:3215;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11088451 | 11088563 | 11088451 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11088928 | 11089078 | 11088928 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11089551 | 11089747 | 11089551 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11090207 | 11090689 | 11090207 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11090965 | 11091136 | 11090965 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11091378 | 11091497 | 11091378 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11091652 | 11091762 | 11091652 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | CDS | 11091940 | 11092074 | 11091940 | ID=Msa0588650-mRNA-1:cds;Parent=Msa0588650-mRNA-1 |
| chr4_2 | three_prime_UTR | 11092075 | 11092233 | 11092075 | ID=Msa0588650-mRNA-1:three_prime_utr;Parent=Msa0588650-mRNA-1 |
| chr4_2 | three_prime_UTR | 11092290 | 11092474 | 11092290 | ID=Msa0588650-mRNA-1:three_prime_utr;Parent=Msa0588650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
